Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522760 | XP_013462110.1 | 95.640 | 734 | 31 | 1 | 1 | 734 | 1 | 733 | 0.0 | 1237 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522760 | A0A072VD92 | 95.640 | 734 | 31 | 1 | 1 | 734 | 1 | 733 | 0.0 | 1237 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0232760 | Msa0522760 | 0.810990 | 8.755498e-51 | -8.615850e-47 |
| Msa0384300 | Msa0522760 | 0.888532 | 5.433376e-73 | -8.615850e-47 |
| Msa0433150 | Msa0522760 | 0.800608 | 1.330901e-48 | -8.615850e-47 |
| Msa0447750 | Msa0522760 | 0.805213 | 1.487642e-49 | -8.615850e-47 |
| Msa0478680 | Msa0522760 | 0.873046 | 1.991455e-67 | -8.615850e-47 |
| Msa0522760 | Msa0563740 | 0.805952 | 1.041088e-49 | -8.615850e-47 |
| Msa0522760 | Msa0722220 | 0.801970 | 7.001354e-49 | -8.615850e-47 |
| Msa0522760 | Msa0761670 | 0.803194 | 3.915473e-49 | -8.615850e-47 |
| Msa0522760 | Msa0791730 | 0.914460 | 1.868397e-84 | -8.615850e-47 |
| Msa0522760 | Msa0835350 | 0.819447 | 1.155752e-52 | -8.615850e-47 |
| Msa0522760 | Msa0931590 | 0.814065 | 1.862036e-51 | -8.615850e-47 |
| Msa0522760 | Msa1078970 | 0.800687 | 1.282205e-48 | -8.615850e-47 |
| Msa0522760 | Msa1116660 | 0.819339 | 1.223411e-52 | -8.615850e-47 |
| Msa0522760 | Msa1116740 | 0.824802 | 6.624126e-54 | -8.615850e-47 |
| Msa0522760 | Msa1220170 | 0.805766 | 1.139062e-49 | -8.615850e-47 |
| Msa0522760 | Msa1268630 | 0.818229 | 2.185870e-52 | -8.615850e-47 |
| Msa0522760 | Msa1309090 | 0.823625 | 1.252493e-53 | -8.615850e-47 |
| Msa0522760 | Msa1400010 | 0.814894 | 1.220901e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522760 | MtrunA17_Chr3g0141461 | 95.640 | 734 | 31 | 1 | 1 | 734 | 1 | 733 | 0.0 | 1237 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0522760 | AT1G75150.2 | 35.135 | 814 | 386 | 30 | 12 | 734 | 14 | 776 | 3.58e-67 | 237 |
| Msa0522760 | AT1G75150.1 | 35.185 | 810 | 383 | 30 | 12 | 730 | 14 | 772 | 7.52e-67 | 236 |
| Msa0522760 | AT1G75150.3 | 35.185 | 810 | 383 | 30 | 12 | 730 | 14 | 772 | 8.05e-67 | 236 |
Find 165 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAACCGCAATTAAGTTTC+TGG | 0.119108 | 3_4:+76083155 | None:intergenic |
| AAAAGAGTGGATTATTTATT+AGG | 0.128270 | 3_4:-76081348 | Msa0522760:three_prime_UTR |
| CCACCCAAGCTTTCAATTTC+AGG | 0.163653 | 3_4:+76085421 | None:intergenic |
| GTCCGATCATCATATATATT+TGG | 0.169505 | 3_4:-76082175 | Msa0522760:CDS |
| CTGTGTATTTCTTTGGAATT+TGG | 0.196893 | 3_4:+76081721 | None:intergenic |
| ATTTGTTCTGTGTATTTCTT+TGG | 0.223685 | 3_4:+76081714 | None:intergenic |
| CGGTTGTATCTCAGATTATA+AGG | 0.256841 | 3_4:-76081772 | Msa0522760:intron |
| TCTGAATCCGAACAGAATTC+TGG | 0.266048 | 3_4:-76085472 | Msa0522760:CDS |
| TGCTAGTCTTTCCGTGCGTT+TGG | 0.280883 | 3_4:-76081445 | Msa0522760:three_prime_UTR |
| GATTCTTCTATTGTCTTCTC+TGG | 0.285609 | 3_4:+76085304 | None:intergenic |
| CTCTTATAAGCAGAAATCTT+TGG | 0.297379 | 3_4:+76081479 | None:intergenic |
| CATCACCTTCTTCATTATCT+TGG | 0.303254 | 3_4:+76083314 | None:intergenic |
| TTTGGGTGCGAAGAGGGTTT+TGG | 0.306380 | 3_4:-76085365 | Msa0522760:CDS |
| GTTCCTGATACCAAGATAAA+AGG | 0.307705 | 3_4:-76082658 | Msa0522760:CDS |
| CATTATCTTGGAAGCGTTGT+AGG | 0.308701 | 3_4:+76083326 | None:intergenic |
| TTGATGATTTAGTTATGTTT+TGG | 0.309038 | 3_4:+76082483 | None:intergenic |
| AAAGAGTGGATTATTTATTA+GGG | 0.320461 | 3_4:-76081347 | Msa0522760:three_prime_UTR |
| GAGAAGACAATAGAAGAATC+TGG | 0.335300 | 3_4:-76085301 | Msa0522760:CDS |
| CACAGTCGAGGAAAACGATT+TGG | 0.339867 | 3_4:-76085383 | Msa0522760:CDS |
| AAGTTCATTGAAAGCATAGA+TGG | 0.344830 | 3_4:+76083884 | None:intergenic |
| AGCTGGTGTTTCTTCGGATT+CGG | 0.359251 | 3_4:+76084574 | None:intergenic |
| GATGATCCCGCAGATGTTTA+CGG | 0.359304 | 3_4:-76082996 | Msa0522760:CDS |
| TCCGATCATCATATATATTT+GGG | 0.359571 | 3_4:-76082174 | Msa0522760:CDS |
| CTTAAGCTTTCGTTCGATGA+TGG | 0.368541 | 3_4:+76085558 | None:intergenic |
| GAAGCCGATTTCGTCTATAC+TGG | 0.369525 | 3_4:-76084829 | Msa0522760:CDS |
| GTCACTGTCATCTTCCTCTT+CGG | 0.375822 | 3_4:+76083354 | None:intergenic |
| GCTAGTCTTTCCGTGCGTTT+GGG | 0.379200 | 3_4:-76081444 | Msa0522760:three_prime_UTR |
| TTGACAGGGTCACCGCTTGC+AGG | 0.380630 | 3_4:+76083397 | None:intergenic |
| TTGACCTTATCGAATTGAAA+TGG | 0.380755 | 3_4:+76085672 | None:intergenic |
| CACCCAAGCTTTCAATTTCA+GGG | 0.391601 | 3_4:+76085422 | None:intergenic |
| TTAAGCACACCGCATATTGA+TGG | 0.391706 | 3_4:-76084530 | Msa0522760:CDS |
| TCGGATTCAGAGAATTTGAT+TGG | 0.402079 | 3_4:+76085484 | None:intergenic |
| TCTATAAGAGAGGGACTGTT+TGG | 0.404011 | 3_4:+76082922 | None:intergenic |
| CTTGAGCAGCAGGATACAAC+TGG | 0.406510 | 3_4:-76083193 | Msa0522760:CDS |
| GGCTTCTGAACCAGAGGAAC+AGG | 0.406665 | 3_4:+76084846 | None:intergenic |
| GCATGTAGCTGGTGTTTCTT+CGG | 0.408069 | 3_4:+76084568 | None:intergenic |
| CGGATTCAGAGAATTTGATT+GGG | 0.410649 | 3_4:+76085485 | None:intergenic |
| CTTAATGATATGATAGCAAC+TGG | 0.412906 | 3_4:-76083271 | Msa0522760:CDS |
| GAAGAAGTTTCAGAGAAGAA+AGG | 0.421975 | 3_4:-76085214 | Msa0522760:CDS |
| TGCGTTTAAACCTGTTCCTC+TGG | 0.431252 | 3_4:-76084856 | Msa0522760:CDS |
| AAGAAGTTTCAGAGAAGAAA+GGG | 0.443719 | 3_4:-76085213 | Msa0522760:CDS |
| TTGTTGGCCAGTTCCCTTTG+TGG | 0.444676 | 3_4:-76081419 | Msa0522760:three_prime_UTR |
| TCGGCAATGGCTTGAGCAGC+AGG | 0.446962 | 3_4:-76083203 | Msa0522760:CDS |
| TCTGGCTTGGAGGAGTCAAT+TGG | 0.447780 | 3_4:-76085454 | Msa0522760:CDS |
| TTAAGCTTTCGTTCGATGAT+GGG | 0.448047 | 3_4:+76085559 | None:intergenic |
| CTTATTCAACTTCCCATTGA+GGG | 0.450679 | 3_4:+76083928 | None:intergenic |
| TGTCCCTGAAATTGAAAGCT+TGG | 0.451837 | 3_4:-76085425 | Msa0522760:CDS |
| GAATTTGGCAGAAACAACTT+TGG | 0.454646 | 3_4:+76081736 | None:intergenic |
| TTCTCTGCAGGGCATGTAGC+TGG | 0.454937 | 3_4:+76084557 | None:intergenic |
| TTATCCAGTATAGACGAAAT+CGG | 0.455844 | 3_4:+76084825 | None:intergenic |
| ACAACGCTTTGTATGATTTG+AGG | 0.457574 | 3_4:+76081628 | None:intergenic |
| GTGCTTAAATCATTCTCTGC+AGG | 0.458300 | 3_4:+76084545 | None:intergenic |
| CTGGTATCCACAAAGGGAAC+TGG | 0.464311 | 3_4:+76081412 | None:intergenic |
| TCATCGACAAAAGCCTTGAC+AGG | 0.469980 | 3_4:+76083382 | None:intergenic |
| ATTTGATTGGGGACGAAGGG+GGG | 0.470584 | 3_4:+76085497 | None:intergenic |
| CGGCTGAAGATGAAAGCAGC+AGG | 0.472410 | 3_4:-76082714 | Msa0522760:CDS |
| TGAAAACATTCCTTCTCCTA+TGG | 0.473423 | 3_4:-76084477 | Msa0522760:intron |
| GAGAATTTGATTGGGGACGA+AGG | 0.474730 | 3_4:+76085493 | None:intergenic |
| CGAATGATTTGCAGCATCGT+TGG | 0.475404 | 3_4:+76084505 | None:intergenic |
| CGATCCATTTCAATTCGATA+AGG | 0.476243 | 3_4:-76085676 | Msa0522760:five_prime_UTR |
| AATTTGGCAGAAACAACTTT+GGG | 0.476283 | 3_4:+76081737 | None:intergenic |
| CTGCTGCTTTCATCTTCAGC+CGG | 0.477500 | 3_4:+76082715 | None:intergenic |
| ACTTACACATCATCATCAAC+AGG | 0.478005 | 3_4:+76083845 | None:intergenic |
| AATGTGTGGCATATCAAATA+TGG | 0.478119 | 3_4:+76082508 | None:intergenic |
| TATTGTCTTCTCTGGAACCC+TGG | 0.480622 | 3_4:+76085312 | None:intergenic |
| AATACCTGGGTATCATCAAC+AGG | 0.482930 | 3_4:+76084073 | None:intergenic |
| AGAAGACAATAGAAGAATCT+GGG | 0.485094 | 3_4:-76085300 | Msa0522760:CDS |
| ATTAAAGAAGAGGCCCTCAA+TGG | 0.488027 | 3_4:-76083941 | Msa0522760:CDS |
| CTCCAAGCCAGAATTCTGTT+CGG | 0.488135 | 3_4:+76085465 | None:intergenic |
| AGAATTTGATTGGGGACGAA+GGG | 0.491036 | 3_4:+76085494 | None:intergenic |
| GTCCCTGAAATTGAAAGCTT+GGG | 0.492026 | 3_4:-76085424 | Msa0522760:CDS |
| CGTTCGATGATGGGAGAAGA+AGG | 0.495851 | 3_4:+76085568 | None:intergenic |
| AGATGGGGCAAACACTTCTT+CGG | 0.497175 | 3_4:+76083901 | None:intergenic |
| AAAGCTTAAGCGTTTGAAGA+AGG | 0.498790 | 3_4:-76085545 | Msa0522760:CDS |
| ACGAAGAAGTCAATTAAGAC+AGG | 0.499928 | 3_4:-76081551 | Msa0522760:CDS |
| CAATAAAAGAAAAGCCGAAA+AGG | 0.503415 | 3_4:-76085113 | Msa0522760:intron |
| ATGCCTTCTTCTCAAAAGCA+TGG | 0.508089 | 3_4:-76082208 | Msa0522760:CDS |
| ACAGTCGAGGAAAACGATTT+GGG | 0.508680 | 3_4:-76085382 | Msa0522760:CDS |
| TTAAAGAAGAGGCCCTCAAT+GGG | 0.508936 | 3_4:-76083940 | Msa0522760:CDS |
| GCGTTTGAAGAAGGCATCTA+GGG | 0.510976 | 3_4:-76085536 | Msa0522760:CDS |
| TTATTGTTGCTGCATTACTC+TGG | 0.511413 | 3_4:+76081393 | None:intergenic |
| TAGTTATCTCTTCACTAGGA+TGG | 0.511460 | 3_4:+76084612 | None:intergenic |
| CGATGACGAGGACAATGATA+AGG | 0.514103 | 3_4:-76083464 | Msa0522760:CDS |
| GAAATCATCGTCGCTATCCA+TGG | 0.514126 | 3_4:+76085600 | None:intergenic |
| CGAACAGAATTCTGGCTTGG+AGG | 0.514744 | 3_4:-76085464 | Msa0522760:CDS |
| CAAGCCATTGCCGATGGAGT+TGG | 0.517971 | 3_4:+76083212 | None:intergenic |
| ATCCGAACAGAATTCTGGCT+TGG | 0.521666 | 3_4:-76085467 | Msa0522760:CDS |
| CTTTATCCGTAAACATCTGC+GGG | 0.523224 | 3_4:+76082990 | None:intergenic |
| GGCTTGGAGGAGTCAATTGG+AGG | 0.523443 | 3_4:-76085451 | Msa0522760:CDS |
| AAACGATTTGGGTGCGAAGA+GGG | 0.525559 | 3_4:-76085371 | Msa0522760:CDS |
| TTGAGATTTAGAAGTTGAAG+TGG | 0.527991 | 3_4:+76081688 | None:intergenic |
| TCTGAAACTTCTTCTACACT+AGG | 0.528815 | 3_4:+76085244 | None:intergenic |
| ATCTGACGATGAAGTTGAAG+AGG | 0.529423 | 3_4:-76083122 | Msa0522760:CDS |
| CGCTTCCAAGATAATGAAGA+AGG | 0.530519 | 3_4:-76083319 | Msa0522760:CDS |
| GTCAGAGGATTCTTCAGATA+CGG | 0.530551 | 3_4:-76082116 | Msa0522760:intron |
| AGAGTCTAATGTATCACTGA+TGG | 0.533199 | 3_4:-76081666 | Msa0522760:CDS |
| TTATTAGTTATCTCTTCACT+AGG | 0.535949 | 3_4:+76084608 | None:intergenic |
| CTTATCATTGTCCTCGTCAT+CGG | 0.538210 | 3_4:+76083465 | None:intergenic |
| GCTTATTCAACTTCCCATTG+AGG | 0.539326 | 3_4:+76083927 | None:intergenic |
| GGTTGTATCTCAGATTATAA+GGG | 0.541946 | 3_4:-76081771 | Msa0522760:intron |
| TGGACGATGAACTTGACGCC+AGG | 0.542343 | 3_4:-76085330 | Msa0522760:CDS |
| AGCGTTTGAAGAAGGCATCT+AGG | 0.544573 | 3_4:-76085537 | Msa0522760:CDS |
| GCTGCTCAAGCCATTGCCGA+TGG | 0.547052 | 3_4:+76083206 | None:intergenic |
| AAGCGTTGTGTCAAGAATGC+CGG | 0.549269 | 3_4:-76081614 | Msa0522760:CDS |
| AATAAATGATATTAAAGAAG+AGG | 0.553156 | 3_4:-76083951 | Msa0522760:CDS |
| TCCCAAATATATATGATGAT+CGG | 0.554179 | 3_4:+76082173 | None:intergenic |
| TACTGGATAAAATTCGAAAG+AGG | 0.561886 | 3_4:-76084812 | Msa0522760:CDS |
| TTGATCTTCACAGCATCAGA+TGG | 0.562695 | 3_4:+76083037 | None:intergenic |
| CACTGATGGAGATATTAAGC+AGG | 0.563186 | 3_4:-76081652 | Msa0522760:CDS |
| AATTTGATTGGGGACGAAGG+GGG | 0.564984 | 3_4:+76085496 | None:intergenic |
| AGTTCATTGAAAGCATAGAT+GGG | 0.567377 | 3_4:+76083885 | None:intergenic |
| CGAAGAAGTCAATTAAGACA+GGG | 0.568898 | 3_4:-76081550 | Msa0522760:CDS |
| ATTACTCTGGTATCCACAAA+GGG | 0.570256 | 3_4:+76081406 | None:intergenic |
| TTCCAGGTCTTCCGATGACG+AGG | 0.572092 | 3_4:-76083476 | Msa0522760:intron |
| GCCAACAAAACCCAAACGCA+CGG | 0.575823 | 3_4:+76081434 | None:intergenic |
| ATCTCTTCACTAGGATGGCG+AGG | 0.576933 | 3_4:+76084617 | None:intergenic |
| GTGACCAACTCCATCGGCAA+TGG | 0.583122 | 3_4:-76083216 | Msa0522760:CDS |
| AACACAGTGCCACACTCACA+TGG | 0.587089 | 3_4:-76083439 | Msa0522760:CDS |
| AAACATAACTAAATCATCAA+AGG | 0.587995 | 3_4:-76082480 | Msa0522760:intron |
| TGCAAGCGGTGACCCTGTCA+AGG | 0.589300 | 3_4:-76083395 | Msa0522760:CDS |
| TCCTCTGACATCAACACTGA+AGG | 0.589871 | 3_4:+76082130 | None:intergenic |
| TGCTTAAATCATTCTCTGCA+GGG | 0.590079 | 3_4:+76084546 | None:intergenic |
| AACTCACAACTCTATAAGAG+AGG | 0.593686 | 3_4:+76082912 | None:intergenic |
| CATTACTCTGGTATCCACAA+AGG | 0.594086 | 3_4:+76081405 | None:intergenic |
| GACTTGTCTTTACCTGCAAG+CGG | 0.597345 | 3_4:-76083409 | Msa0522760:CDS |
| TGTGAAGATCAATCTGAAGA+AGG | 0.597643 | 3_4:-76083026 | Msa0522760:CDS |
| TGTCGATGAAGAAGCCGAAG+AGG | 0.600579 | 3_4:-76083368 | Msa0522760:CDS |
| ATATTTGATATGCCACACAT+TGG | 0.602377 | 3_4:-76082506 | Msa0522760:CDS |
| GAATTTGATTGGGGACGAAG+GGG | 0.602567 | 3_4:+76085495 | None:intergenic |
| TATTGACTAACCATAGGAGA+AGG | 0.604545 | 3_4:+76084467 | None:intergenic |
| AAAAGCGTGACCAACTCCAT+CGG | 0.604557 | 3_4:-76083222 | Msa0522760:CDS |
| ACCTTCAGTGTTGATGTCAG+AGG | 0.605071 | 3_4:-76082131 | Msa0522760:CDS |
| GCAGCAGGATACAACTGGGA+TGG | 0.605675 | 3_4:-76083188 | Msa0522760:CDS |
| GGATTCAGAGAATTTGATTG+GGG | 0.608596 | 3_4:+76085486 | None:intergenic |
| GATGATGGGAGAAGAAGGTA+AGG | 0.611648 | 3_4:+76085573 | None:intergenic |
| AGCTCCTGTTGATGATACCC+AGG | 0.611990 | 3_4:-76084077 | Msa0522760:intron |
| AAGAGCAGTGACGACAGTAA+CGG | 0.614383 | 3_4:-76085166 | Msa0522760:CDS |
| TGATGTATGATGTCAAATGA+TGG | 0.621310 | 3_4:-76081518 | Msa0522760:three_prime_UTR |
| GGACGATGAACTTGACGCCA+GGG | 0.623312 | 3_4:-76085329 | Msa0522760:CDS |
| TCAAAAGCATGGATCAAGCA+AGG | 0.624049 | 3_4:-76082197 | Msa0522760:CDS |
| GAAGACAATAGAAGAATCTG+GGG | 0.628399 | 3_4:-76085299 | Msa0522760:CDS |
| AAAACGATTTGGGTGCGAAG+AGG | 0.629285 | 3_4:-76085372 | Msa0522760:CDS |
| ACTCACAACTCTATAAGAGA+GGG | 0.630084 | 3_4:+76082913 | None:intergenic |
| GCGAAGAAGTCTCTGAGACT+CGG | 0.630403 | 3_4:+76084979 | None:intergenic |
| TCTTTATCCGTAAACATCTG+CGG | 0.632377 | 3_4:+76082989 | None:intergenic |
| GGCTGAAGATGAAAGCAGCA+GGG | 0.633689 | 3_4:-76082713 | Msa0522760:CDS |
| GAGTCTCAGAGACTTCTTCG+CGG | 0.647421 | 3_4:-76084977 | Msa0522760:intron |
| CCTGAAATTGAAAGCTTGGG+TGG | 0.651371 | 3_4:-76085421 | Msa0522760:CDS |
| ATCATCTGATGAGGAAACTG+AGG | 0.653080 | 3_4:-76082954 | Msa0522760:CDS |
| CTACTCCAGAAACTTAATTG+CGG | 0.654037 | 3_4:-76083160 | Msa0522760:CDS |
| CATCGACAAAAGCCTTGACA+GGG | 0.655621 | 3_4:+76083383 | None:intergenic |
| GCTGAAGATGAAAGCAGCAG+GGG | 0.663173 | 3_4:-76082712 | Msa0522760:CDS |
| AAATGTTACTGACACAGTCG+AGG | 0.668281 | 3_4:-76085395 | Msa0522760:CDS |
| CTGATGAGGAAACTGAGGAG+AGG | 0.669168 | 3_4:-76082949 | Msa0522760:CDS |
| TCAGCTGATCCATGTGAGTG+TGG | 0.671330 | 3_4:+76083430 | None:intergenic |
| GTTCATTGAAAGCATAGATG+GGG | 0.673358 | 3_4:+76083886 | None:intergenic |
| GAAATCGGCTTCTGAACCAG+AGG | 0.680025 | 3_4:+76084840 | None:intergenic |
| TTGAGCAGCAGGATACAACT+GGG | 0.682128 | 3_4:-76083192 | Msa0522760:CDS |
| TCAGATCTCAGAATCAACCA+TGG | 0.682198 | 3_4:-76085617 | Msa0522760:exon |
| TGCATATGTATCATCTGATG+AGG | 0.684397 | 3_4:-76082963 | Msa0522760:CDS |
| GAAGAAGTCAATTAAGACAG+GGG | 0.696735 | 3_4:-76081549 | Msa0522760:CDS |
| TGAAGTTGAAGAGGAAGACG+AGG | 0.701412 | 3_4:-76083113 | Msa0522760:CDS |
| GCTCAGAATCAATATCCACA+TGG | 0.713481 | 3_4:+76084639 | None:intergenic |
| TGACAATGATGGCTTCCATG+TGG | 0.715727 | 3_4:-76084654 | Msa0522760:CDS |
| TCGTTGGAACCATCAATATG+CGG | 0.718394 | 3_4:+76084521 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGTTAAATAAAATTGT+AGG | - | chr3_4:76084632-76084651 | Msa0522760:CDS | 10.0% |
| !!! | ATTTGTTAAATAAAATTGTA+GGG | - | chr3_4:76084633-76084652 | Msa0522760:CDS | 10.0% |
| !! | ATTGTATAAAAATAATTCAC+TGG | + | chr3_4:76081952-76081971 | None:intergenic | 15.0% |
| !!! | TTTGTGTTAGTTTATTAAAT+GGG | - | chr3_4:76082832-76082851 | Msa0522760:intron | 15.0% |
| !! | AATAAATGATATTAAAGAAG+AGG | - | chr3_4:76083074-76083093 | Msa0522760:CDS | 15.0% |
| !! | TAAAATTAATAGATCTTACA+TGG | + | chr3_4:76084400-76084419 | None:intergenic | 15.0% |
| !!! | TTTTATTTAACAAATTTGCT+GGG | + | chr3_4:76084628-76084647 | None:intergenic | 15.0% |
| !!! | ATTTTATTTAACAAATTTGC+TGG | + | chr3_4:76084629-76084648 | None:intergenic | 15.0% |
| !! | TTTGTTAAATAAAATTGTAG+GGG | - | chr3_4:76084634-76084653 | Msa0522760:CDS | 15.0% |
| !!! | TGTAGATTCATTGATTTTAT+AGG | - | chr3_4:76081993-76082012 | Msa0522760:intron | 20.0% |
| !!! | AGAATTTTTAAAGAAGTAAG+TGG | - | chr3_4:76082241-76082260 | Msa0522760:CDS | 20.0% |
| !! | TTACTTTAGATAAACACTAA+TGG | - | chr3_4:76082310-76082329 | Msa0522760:intron | 20.0% |
| !!! | ATTGATTTTGAATATCTAAC+TGG | - | chr3_4:76082651-76082670 | Msa0522760:CDS | 20.0% |
| !!! | TTGATTTTGAATATCTAACT+GGG | - | chr3_4:76082652-76082671 | Msa0522760:CDS | 20.0% |
| !! | ATTCTATACTTTGTAACTTA+TGG | + | chr3_4:76082778-76082797 | None:intergenic | 20.0% |
| !!! | CTTTGTGTTAGTTTATTAAA+TGG | - | chr3_4:76082831-76082850 | Msa0522760:intron | 20.0% |
| !!! | TTTATTTGTCTTTGATTTCT+AGG | - | chr3_4:76083032-76083051 | Msa0522760:CDS | 20.0% |
| !! | ATAAACTATAATCCTTACTT+TGG | - | chr3_4:76083316-76083335 | Msa0522760:CDS | 20.0% |
| !! | TAAACTATAATCCTTACTTT+GGG | - | chr3_4:76083317-76083336 | Msa0522760:CDS | 20.0% |
| !!! | ATTTTTAATTTCCAGAACAA+TGG | + | chr3_4:76083513-76083532 | None:intergenic | 20.0% |
| !!! | ATTTTAGTATTTCACGAAAT+TGG | - | chr3_4:76084414-76084433 | Msa0522760:intron | 20.0% |
| !!! | TTGATGATTTAGTTATGTTT+TGG | + | chr3_4:76084545-76084564 | None:intergenic | 20.0% |
| !! | AAACATAACTAAATCATCAA+AGG | - | chr3_4:76084545-76084564 | Msa0522760:CDS | 20.0% |
| !! | TTGTTAAATAAAATTGTAGG+GGG | - | chr3_4:76084635-76084654 | Msa0522760:CDS | 20.0% |
| !!! | ATATTTCAGTCATCTTTTAT+CGG | - | chr3_4:76084775-76084794 | Msa0522760:intron | 20.0% |
| !! | TAGCATAATTCATAGAAAAA+TGG | + | chr3_4:76084991-76085010 | None:intergenic | 20.0% |
| !! | ATGCTAAACATAAATTTAGT+TGG | + | chr3_4:76085072-76085091 | None:intergenic | 20.0% |
| !! | AATAGTATTTAAAAAAGGAG+AGG | + | chr3_4:76085167-76085186 | None:intergenic | 20.0% |
| !!! | AATTTTCAATACAAAAAGAG+TGG | - | chr3_4:76085664-76085683 | Msa0522760:five_prime_UTR | 20.0% |
| !!! | AAAAGAGTGGATTATTTATT+AGG | - | chr3_4:76085677-76085696 | Msa0522760:five_prime_UTR | 20.0% |
| !!! | TCTTGTTTCTAAACAAAACA+CGG | + | chr3_4:76082144-76082163 | None:intergenic | 25.0% |
| !! | ATAAACACTAATGGATACTT+GGG | - | chr3_4:76082319-76082338 | Msa0522760:intron | 25.0% |
| ! | TTATTAGTTATCTCTTCACT+AGG | + | chr3_4:76082420-76082439 | None:intergenic | 25.0% |
| ! | AATTGTATTGTATAACTAGC+TGG | + | chr3_4:76082586-76082605 | None:intergenic | 25.0% |
| ! | GCTAGTTATACAATACAATT+TGG | - | chr3_4:76082586-76082605 | Msa0522760:intron | 25.0% |
| !! | TGATTTTGAATATCTAACTG+GGG | - | chr3_4:76082653-76082672 | Msa0522760:CDS | 25.0% |
| ! | AACTAACACAAAGATTTCAA+GGG | + | chr3_4:76082824-76082843 | None:intergenic | 25.0% |
| ! | AAACTAACACAAAGATTTCA+AGG | + | chr3_4:76082825-76082844 | None:intergenic | 25.0% |
| !!! | AAGAAAGCATCTGAATAAAT+GGG | + | chr3_4:76082984-76083003 | None:intergenic | 25.0% |
| !!! | TAAGAAAGCATCTGAATAAA+TGG | + | chr3_4:76082985-76083004 | None:intergenic | 25.0% |
| ! | ACTAAATCTGAAGATAACAA+AGG | + | chr3_4:76083221-76083240 | None:intergenic | 25.0% |
| ! | ATAGACAATGAAACTTTATG+TGG | + | chr3_4:76083258-76083277 | None:intergenic | 25.0% |
| ! | TAGCTATATGGTTGTTAATT+TGG | - | chr3_4:76083347-76083366 | Msa0522760:CDS | 25.0% |
| !!! | GTTAATTTGGATTTTTACGT+TGG | - | chr3_4:76083360-76083379 | Msa0522760:CDS | 25.0% |
| !! | ATTTTTACGTTGGAAAATTC+TGG | - | chr3_4:76083370-76083389 | Msa0522760:CDS | 25.0% |
| ! | TATGATGAGAAAGTAAATGA+TGG | - | chr3_4:76083399-76083418 | Msa0522760:CDS | 25.0% |
| ! | GTTAAAGGAAAAAGATAAAC+AGG | + | chr3_4:76083439-76083458 | None:intergenic | 25.0% |
| ! | TACACTATGGAAGAATTAAA+AGG | + | chr3_4:76083471-76083490 | None:intergenic | 25.0% |
| !!! | TTTTAATTCTTCCATAGTGT+AGG | - | chr3_4:76083470-76083489 | Msa0522760:CDS | 25.0% |
| ! | TCAAAATTGTAATGTGTAAC+AGG | - | chr3_4:76084264-76084283 | Msa0522760:intron | 25.0% |
| ! | ATAACTAAATCATCAAAGGT+AGG | - | chr3_4:76084549-76084568 | Msa0522760:CDS | 25.0% |
| ! | TCCGATCATCATATATATTT+GGG | - | chr3_4:76084851-76084870 | Msa0522760:CDS | 25.0% |
| ! | TCCCAAATATATATGATGAT+CGG | + | chr3_4:76084855-76084874 | None:intergenic | 25.0% |
| ! | TTCATCAGTTGAAATTCATA+TGG | - | chr3_4:76085044-76085063 | Msa0522760:intron | 25.0% |
| ! | TAATACTACTAGAAATGTGA+TGG | - | chr3_4:76085116-76085135 | Msa0522760:CDS | 25.0% |
| ! | ATTTGTTCTGTGTATTTCTT+TGG | + | chr3_4:76085314-76085333 | None:intergenic | 25.0% |
| TTGACCTTATCGAATTGAAA+TGG | + | chr3_4:76081356-76081375 | None:intergenic | 30.0% | |
| !!! | ACTTTTTGGTTTTTGGAAAC+AGG | + | chr3_4:76081383-76081402 | None:intergenic | 30.0% |
| AGAAGACAATAGAAGAATCT+GGG | - | chr3_4:76081725-76081744 | Msa0522760:CDS | 30.0% | |
| AAGAAGTTTCAGAGAAGAAA+GGG | - | chr3_4:76081791-76081810 | Msa0522760:intron | 30.0% | |
| ! | CTTTTCGGCTTTTCTTTTAT+TGG | + | chr3_4:76081914-76081933 | None:intergenic | 30.0% |
| CAATAAAAGAAAAGCCGAAA+AGG | - | chr3_4:76081912-76081931 | Msa0522760:intron | 30.0% | |
| ! | AAAACGCATACAAACCTTTT+CGG | + | chr3_4:76081929-76081948 | None:intergenic | 30.0% |
| CGGTAAACTAACTGAATAAT+TGG | + | chr3_4:76082124-76082143 | None:intergenic | 30.0% | |
| TTATCCAGTATAGACGAAAT+CGG | + | chr3_4:76082203-76082222 | None:intergenic | 30.0% | |
| TACTGGATAAAATTCGAAAG+AGG | - | chr3_4:76082213-76082232 | Msa0522760:CDS | 30.0% | |
| ! | GATAAACACTAATGGATACT+TGG | - | chr3_4:76082318-76082337 | Msa0522760:intron | 30.0% |
| ! | GTTTCTTTTCATGACAATGA+TGG | - | chr3_4:76082360-76082379 | Msa0522760:intron | 30.0% |
| GTTTATTAAATGGGAGATGT+TGG | - | chr3_4:76082841-76082860 | Msa0522760:intron | 30.0% | |
| ! | TCAAAGACAAATAAAGCACT+TGG | + | chr3_4:76083027-76083046 | None:intergenic | 30.0% |
| ! | AGTTCATTGAAAGCATAGAT+GGG | + | chr3_4:76083143-76083162 | None:intergenic | 30.0% |
| ! | AAGTTCATTGAAAGCATAGA+TGG | + | chr3_4:76083144-76083163 | None:intergenic | 30.0% |
| ! | CTTTTTCCTTTAACAAACCT+TGG | - | chr3_4:76083445-76083464 | Msa0522760:CDS | 30.0% |
| CTTAATGATATGATAGCAAC+TGG | - | chr3_4:76083754-76083773 | Msa0522760:intron | 30.0% | |
| !!! | TATTGCTGTCACTTTGATTT+TGG | - | chr3_4:76084163-76084182 | Msa0522760:intron | 30.0% |
| AATGTGTGGCATATCAAATA+TGG | + | chr3_4:76084520-76084539 | None:intergenic | 30.0% | |
| ATATTTGATATGCCACACAT+TGG | - | chr3_4:76084519-76084538 | Msa0522760:CDS | 30.0% | |
| !! | TAACAAATTTGCTGGGATAA+AGG | + | chr3_4:76084621-76084640 | None:intergenic | 30.0% |
| ! | TGCTGATAAAAACAGTTTTG+TGG | + | chr3_4:76084707-76084726 | None:intergenic | 30.0% |
| GTCCGATCATCATATATATT+TGG | - | chr3_4:76084850-76084869 | Msa0522760:CDS | 30.0% | |
| GGTTGTATCTCAGATTATAA+GGG | - | chr3_4:76085254-76085273 | Msa0522760:CDS | 30.0% | |
| AATTTGGCAGAAACAACTTT+GGG | + | chr3_4:76085291-76085310 | None:intergenic | 30.0% | |
| !! | CTGTGTATTTCTTTGGAATT+TGG | + | chr3_4:76085307-76085326 | None:intergenic | 30.0% |
| TTGAGATTTAGAAGTTGAAG+TGG | + | chr3_4:76085340-76085359 | None:intergenic | 30.0% | |
| TGATGTATGATGTCAAATGA+TGG | - | chr3_4:76085507-76085526 | Msa0522760:CDS | 30.0% | |
| CTCTTATAAGCAGAAATCTT+TGG | + | chr3_4:76085549-76085568 | None:intergenic | 30.0% | |
| CGATCCATTTCAATTCGATA+AGG | - | chr3_4:76081349-76081368 | Msa0522760:three_prime_UTR | 35.0% | |
| !!! | GAACGACACTTTTTGGTTTT+TGG | + | chr3_4:76081390-76081409 | None:intergenic | 35.0% |
| TTAAGCTTTCGTTCGATGAT+GGG | + | chr3_4:76081469-76081488 | None:intergenic | 35.0% | |
| AAAGCTTAAGCGTTTGAAGA+AGG | - | chr3_4:76081480-76081499 | Msa0522760:three_prime_UTR | 35.0% | |
| GGATTCAGAGAATTTGATTG+GGG | + | chr3_4:76081542-76081561 | None:intergenic | 35.0% | |
| CGGATTCAGAGAATTTGATT+GGG | + | chr3_4:76081543-76081562 | None:intergenic | 35.0% | |
| TCGGATTCAGAGAATTTGAT+TGG | + | chr3_4:76081544-76081563 | None:intergenic | 35.0% | |
| !!! | GGTTTTGGAGTTTGAATCTA+TGG | - | chr3_4:76081675-76081694 | Msa0522760:CDS | 35.0% |
| GATTCTTCTATTGTCTTCTC+TGG | + | chr3_4:76081724-76081743 | None:intergenic | 35.0% | |
| GAGAAGACAATAGAAGAATC+TGG | - | chr3_4:76081724-76081743 | Msa0522760:CDS | 35.0% | |
| GAAGACAATAGAAGAATCTG+GGG | - | chr3_4:76081726-76081745 | Msa0522760:CDS | 35.0% | |
| ! | TCTGAAACTTCTTCTACACT+AGG | + | chr3_4:76081784-76081803 | None:intergenic | 35.0% |
| GAAGAAGTTTCAGAGAAGAA+AGG | - | chr3_4:76081790-76081809 | Msa0522760:intron | 35.0% | |
| !!! | TTCGCGGTATGGATTTTTTT+TGG | - | chr3_4:76082064-76082083 | Msa0522760:intron | 35.0% |
| TGTTTCAGCATGCACTTAAT+TGG | - | chr3_4:76082280-76082299 | Msa0522760:intron | 35.0% | |
| GTTTCAGCATGCACTTAATT+GGG | - | chr3_4:76082281-76082300 | Msa0522760:intron | 35.0% | |
| TAGTTATCTCTTCACTAGGA+TGG | + | chr3_4:76082416-76082435 | None:intergenic | 35.0% | |
| TGCTTAAATCATTCTCTGCA+GGG | + | chr3_4:76082482-76082501 | None:intergenic | 35.0% | |
| ! | TAGGAGAAGGAATGTTTTCA+CGG | + | chr3_4:76082548-76082567 | None:intergenic | 35.0% |
| TGAAAACATTCCTTCTCCTA+TGG | - | chr3_4:76082548-76082567 | Msa0522760:intron | 35.0% | |
| ! | TATTGACTAACCATAGGAGA+AGG | + | chr3_4:76082561-76082580 | None:intergenic | 35.0% |
| ! | CTGGAATATTGACTAACCAT+AGG | + | chr3_4:76082567-76082586 | None:intergenic | 35.0% |
| !! | CTGCTCTCACTATATTTTGA+TGG | - | chr3_4:76082703-76082722 | Msa0522760:CDS | 35.0% |
| AAATGGGTGACATAATACCT+GGG | + | chr3_4:76082968-76082987 | None:intergenic | 35.0% | |
| TAAATGGGTGACATAATACC+TGG | + | chr3_4:76082969-76082988 | None:intergenic | 35.0% | |
| CTTATTCAACTTCCCATTGA+GGG | + | chr3_4:76083100-76083119 | None:intergenic | 35.0% | |
| ! | GTTCATTGAAAGCATAGATG+GGG | + | chr3_4:76083142-76083161 | None:intergenic | 35.0% |
| ACTTACACATCATCATCAAC+AGG | + | chr3_4:76083183-76083202 | None:intergenic | 35.0% | |
| ATCAGCAACGATGAAACAAA+TGG | + | chr3_4:76083290-76083309 | None:intergenic | 35.0% | |
| !! | AAAAGGCCAAGGTTTGTTAA+AGG | + | chr3_4:76083454-76083473 | None:intergenic | 35.0% |
| ATGGAAGAATTAAAAGGCCA+AGG | + | chr3_4:76083465-76083484 | None:intergenic | 35.0% | |
| AATTGAAGAGTCCTACACTA+TGG | + | chr3_4:76083484-76083503 | None:intergenic | 35.0% | |
| ! | CAATTTGCTTTCCATTGTTC+TGG | - | chr3_4:76083499-76083518 | Msa0522760:intron | 35.0% |
| CATCACCTTCTTCATTATCT+TGG | + | chr3_4:76083714-76083733 | None:intergenic | 35.0% | |
| ! | TGATGATGATGATGATATCG+AGG | - | chr3_4:76083729-76083748 | Msa0522760:intron | 35.0% |
| ! | TCACGCTTTTCTCTATCAAT+TGG | + | chr3_4:76083793-76083812 | None:intergenic | 35.0% |
| CTACTCCAGAAACTTAATTG+CGG | - | chr3_4:76083865-76083884 | Msa0522760:CDS | 35.0% | |
| TTGAACCGCAATTAAGTTTC+TGG | + | chr3_4:76083873-76083892 | None:intergenic | 35.0% | |
| TGTGAAGATCAATCTGAAGA+AGG | - | chr3_4:76083999-76084018 | Msa0522760:intron | 35.0% | |
| TCTTTATCCGTAAACATCTG+CGG | + | chr3_4:76084039-76084058 | None:intergenic | 35.0% | |
| TGCATATGTATCATCTGATG+AGG | - | chr3_4:76084062-76084081 | Msa0522760:intron | 35.0% | |
| ACTCACAACTCTATAAGAGA+GGG | + | chr3_4:76084115-76084134 | None:intergenic | 35.0% | |
| AACTCACAACTCTATAAGAG+AGG | + | chr3_4:76084116-76084135 | None:intergenic | 35.0% | |
| GTTCCTGATACCAAGATAAA+AGG | - | chr3_4:76084367-76084386 | Msa0522760:intron | 35.0% | |
| ! | CTTCCTTTTATCTTGGTATC+AGG | + | chr3_4:76084373-76084392 | None:intergenic | 35.0% |
| ! | TGGAGTTCTTCCTTTTATCT+TGG | + | chr3_4:76084380-76084399 | None:intergenic | 35.0% |
| TCATAATCTTGAAGCCTGAT+TGG | + | chr3_4:76084460-76084479 | None:intergenic | 35.0% | |
| CAAGATTATGACCATGCTAA+CGG | - | chr3_4:76084469-76084488 | Msa0522760:intron | 35.0% | |
| GTTTAGCATGCATGATTTAG+TGG | - | chr3_4:76085083-76085102 | Msa0522760:intron | 35.0% | |
| CGGTTGTATCTCAGATTATA+AGG | - | chr3_4:76085253-76085272 | Msa0522760:CDS | 35.0% | |
| GAATTTGGCAGAAACAACTT+TGG | + | chr3_4:76085292-76085311 | None:intergenic | 35.0% | |
| AGAGTCTAATGTATCACTGA+TGG | - | chr3_4:76085359-76085378 | Msa0522760:CDS | 35.0% | |
| ACAACGCTTTGTATGATTTG+AGG | + | chr3_4:76085400-76085419 | None:intergenic | 35.0% | |
| ! | AGATTCATTTTGCTGAACTC+CGG | + | chr3_4:76085433-76085452 | None:intergenic | 35.0% |
| ACGAAGAAGTCAATTAAGAC+AGG | - | chr3_4:76085474-76085493 | Msa0522760:CDS | 35.0% | |
| CGAAGAAGTCAATTAAGACA+GGG | - | chr3_4:76085475-76085494 | Msa0522760:CDS | 35.0% | |
| GAAGAAGTCAATTAAGACAG+GGG | - | chr3_4:76085476-76085495 | Msa0522760:CDS | 35.0% | |
| ATTACTCTGGTATCCACAAA+GGG | + | chr3_4:76085622-76085641 | None:intergenic | 35.0% | |
| TTATTGTTGCTGCATTACTC+TGG | + | chr3_4:76085635-76085654 | None:intergenic | 35.0% | |
| ! | GAGATCTGAACGACACTTTT+TGG | + | chr3_4:76081397-76081416 | None:intergenic | 40.0% |
| TCAGATCTCAGAATCAACCA+TGG | - | chr3_4:76081408-76081427 | Msa0522760:three_prime_UTR | 40.0% | |
| CTTAAGCTTTCGTTCGATGA+TGG | + | chr3_4:76081470-76081489 | None:intergenic | 40.0% | |
| AGAATTTGATTGGGGACGAA+GGG | + | chr3_4:76081534-76081553 | None:intergenic | 40.0% | |
| TCTGAATCCGAACAGAATTC+TGG | - | chr3_4:76081553-76081572 | Msa0522760:CDS | 40.0% | |
| TGTCCCTGAAATTGAAAGCT+TGG | - | chr3_4:76081600-76081619 | Msa0522760:CDS | 40.0% | |
| GTCCCTGAAATTGAAAGCTT+GGG | - | chr3_4:76081601-76081620 | Msa0522760:CDS | 40.0% | |
| CACCCAAGCTTTCAATTTCA+GGG | + | chr3_4:76081606-76081625 | None:intergenic | 40.0% | |
| AAATGTTACTGACACAGTCG+AGG | - | chr3_4:76081630-76081649 | Msa0522760:CDS | 40.0% | |
| ACAGTCGAGGAAAACGATTT+GGG | - | chr3_4:76081643-76081662 | Msa0522760:CDS | 40.0% | |
| ! | ACACTAATGGATACTTGGGT+TGG | - | chr3_4:76082323-76082342 | Msa0522760:intron | 40.0% |
| ! | CACTAATGGATACTTGGGTT+GGG | - | chr3_4:76082324-76082343 | Msa0522760:intron | 40.0% |
| GCTCAGAATCAATATCCACA+TGG | + | chr3_4:76082389-76082408 | None:intergenic | 40.0% | |
| GTGCTTAAATCATTCTCTGC+AGG | + | chr3_4:76082483-76082502 | None:intergenic | 40.0% | |
| TTAAGCACACCGCATATTGA+TGG | - | chr3_4:76082495-76082514 | Msa0522760:CDS | 40.0% | |
| TCGTTGGAACCATCAATATG+CGG | + | chr3_4:76082507-76082526 | None:intergenic | 40.0% | |
| AATACCTGGGTATCATCAAC+AGG | + | chr3_4:76082955-76082974 | None:intergenic | 40.0% | |
| ATTAAAGAAGAGGCCCTCAA+TGG | - | chr3_4:76083084-76083103 | Msa0522760:CDS | 40.0% | |
| TTAAAGAAGAGGCCCTCAAT+GGG | - | chr3_4:76083085-76083104 | Msa0522760:CDS | 40.0% | |
| GCTTATTCAACTTCCCATTG+AGG | + | chr3_4:76083101-76083120 | None:intergenic | 40.0% | |
| CTTCAGATTTAGTCACTCAC+TGG | - | chr3_4:76083228-76083247 | Msa0522760:CDS | 40.0% | |
| TTGGGATGAGCTTAGCTATA+TGG | - | chr3_4:76083335-76083354 | Msa0522760:CDS | 40.0% | |
| !!! | GACAACCAATCCTTTTTTCC+AGG | - | chr3_4:76083533-76083552 | Msa0522760:intron | 40.0% |
| GAAGACCTGGAAAAAAGGAT+TGG | + | chr3_4:76083541-76083560 | None:intergenic | 40.0% | |
| CTTATCATTGTCCTCGTCAT+CGG | + | chr3_4:76083563-76083582 | None:intergenic | 40.0% | |
| !! | CATTATCTTGGAAGCGTTGT+AGG | + | chr3_4:76083702-76083721 | None:intergenic | 40.0% |
| CGCTTCCAAGATAATGAAGA+AGG | - | chr3_4:76083706-76083725 | Msa0522760:intron | 40.0% | |
| ATCTGACGATGAAGTTGAAG+AGG | - | chr3_4:76083903-76083922 | Msa0522760:CDS | 40.0% | |
| TTGATCTTCACAGCATCAGA+TGG | + | chr3_4:76083991-76084010 | None:intergenic | 40.0% | |
| CTTTATCCGTAAACATCTGC+GGG | + | chr3_4:76084038-76084057 | None:intergenic | 40.0% | |
| ATCATCTGATGAGGAAACTG+AGG | - | chr3_4:76084071-76084090 | Msa0522760:intron | 40.0% | |
| TCTATAAGAGAGGGACTGTT+TGG | + | chr3_4:76084106-76084125 | None:intergenic | 40.0% | |
| TTCCATCTTTGCATGCACTA+AGG | - | chr3_4:76084202-76084221 | Msa0522760:intron | 40.0% | |
| TACCTTAGTGCATGCAAAGA+TGG | + | chr3_4:76084207-76084226 | None:intergenic | 40.0% | |
| ! | GAACGCTCAATTCTTTTCAC+CGG | - | chr3_4:76084291-76084310 | Msa0522760:intron | 40.0% |
| CTGATTGGTGTACATTGCAT+AGG | + | chr3_4:76084445-76084464 | None:intergenic | 40.0% | |
| CTATGCAATGTACACCAATC+AGG | - | chr3_4:76084443-76084462 | Msa0522760:intron | 40.0% | |
| AATGGAACAAACCGTTAGCA+TGG | + | chr3_4:76084483-76084502 | None:intergenic | 40.0% | |
| ATGGCTGCAGCATACAATAA+TGG | + | chr3_4:76084501-76084520 | None:intergenic | 40.0% | |
| !!! | GTTATGTTTTGGCCAATGTG+TGG | + | chr3_4:76084534-76084553 | None:intergenic | 40.0% |
| ATGCCTTCTTCTCAAAAGCA+TGG | - | chr3_4:76084817-76084836 | Msa0522760:CDS | 40.0% | |
| !! | GATCCATGCTTTTGAGAAGA+AGG | + | chr3_4:76084823-76084842 | None:intergenic | 40.0% |
| ! | TCAAAAGCATGGATCAAGCA+AGG | - | chr3_4:76084828-76084847 | Msa0522760:CDS | 40.0% |
| GTCAGAGGATTCTTCAGATA+CGG | - | chr3_4:76084909-76084928 | Msa0522760:intron | 40.0% | |
| GCATGATTTAGTGGAATCTG+TGG | - | chr3_4:76085092-76085111 | Msa0522760:intron | 40.0% | |
| CACTGATGGAGATATTAAGC+AGG | - | chr3_4:76085373-76085392 | Msa0522760:CDS | 40.0% | |
| CATTACTCTGGTATCCACAA+AGG | + | chr3_4:76085623-76085642 | None:intergenic | 40.0% | |
| GAAATCATCGTCGCTATCCA+TGG | + | chr3_4:76081428-76081447 | None:intergenic | 45.0% | |
| !! | GATGATGGGAGAAGAAGGTA+AGG | + | chr3_4:76081455-76081474 | None:intergenic | 45.0% |
| !! | AGCGTTTGAAGAAGGCATCT+AGG | - | chr3_4:76081488-76081507 | Msa0522760:three_prime_UTR | 45.0% |
| !! | GCGTTTGAAGAAGGCATCTA+GGG | - | chr3_4:76081489-76081508 | Msa0522760:three_prime_UTR | 45.0% |
| AATTTGATTGGGGACGAAGG+GGG | + | chr3_4:76081532-76081551 | None:intergenic | 45.0% | |
| GAATTTGATTGGGGACGAAG+GGG | + | chr3_4:76081533-76081552 | None:intergenic | 45.0% | |
| GAGAATTTGATTGGGGACGA+AGG | + | chr3_4:76081535-76081554 | None:intergenic | 45.0% | |
| ! | ATCCGAACAGAATTCTGGCT+TGG | - | chr3_4:76081558-76081577 | Msa0522760:CDS | 45.0% |
| CTCCAAGCCAGAATTCTGTT+CGG | + | chr3_4:76081563-76081582 | None:intergenic | 45.0% | |
| CCACCCAAGCTTTCAATTTC+AGG | + | chr3_4:76081607-76081626 | None:intergenic | 45.0% | |
| CCTGAAATTGAAAGCTTGGG+TGG | - | chr3_4:76081604-76081623 | Msa0522760:CDS | 45.0% | |
| CACAGTCGAGGAAAACGATT+TGG | - | chr3_4:76081642-76081661 | Msa0522760:CDS | 45.0% | |
| ! | AAAACGATTTGGGTGCGAAG+AGG | - | chr3_4:76081653-76081672 | Msa0522760:CDS | 45.0% |
| ! | AAACGATTTGGGTGCGAAGA+GGG | - | chr3_4:76081654-76081673 | Msa0522760:CDS | 45.0% |
| !! | TATTGTCTTCTCTGGAACCC+TGG | + | chr3_4:76081716-76081735 | None:intergenic | 45.0% |
| AAGAGCAGTGACGACAGTAA+CGG | - | chr3_4:76081859-76081878 | Msa0522760:intron | 45.0% | |
| TGCGTTTAAACCTGTTCCTC+TGG | - | chr3_4:76082169-76082188 | Msa0522760:CDS | 45.0% | |
| ! | GAAGCCGATTTCGTCTATAC+TGG | - | chr3_4:76082196-76082215 | Msa0522760:CDS | 45.0% |
| TGACAATGATGGCTTCCATG+TGG | - | chr3_4:76082371-76082390 | Msa0522760:intron | 45.0% | |
| AGCTGGTGTTTCTTCGGATT+CGG | + | chr3_4:76082454-76082473 | None:intergenic | 45.0% | |
| GCATGTAGCTGGTGTTTCTT+CGG | + | chr3_4:76082460-76082479 | None:intergenic | 45.0% | |
| ! | CGAATGATTTGCAGCATCGT+TGG | + | chr3_4:76082523-76082542 | None:intergenic | 45.0% |
| CATTGCTTACGCTGAGTTTC+AGG | - | chr3_4:76082894-76082913 | Msa0522760:intron | 45.0% | |
| TTACGCTGAGTTTCAGGATG+TGG | - | chr3_4:76082900-76082919 | Msa0522760:intron | 45.0% | |
| AGATGGGGCAAACACTTCTT+CGG | + | chr3_4:76083127-76083146 | None:intergenic | 45.0% | |
| GCTAAGCTCATCCCAAAGTA+AGG | + | chr3_4:76083331-76083350 | None:intergenic | 45.0% | |
| CATCGGAAGACCTGGAAAAA+AGG | + | chr3_4:76083546-76083565 | None:intergenic | 45.0% | |
| CGATGACGAGGACAATGATA+AGG | - | chr3_4:76083561-76083580 | Msa0522760:intron | 45.0% | |
| GACTTGTCTTTACCTGCAAG+CGG | - | chr3_4:76083616-76083635 | Msa0522760:intron | 45.0% | |
| CATCGACAAAAGCCTTGACA+GGG | + | chr3_4:76083645-76083664 | None:intergenic | 45.0% | |
| TCATCGACAAAAGCCTTGAC+AGG | + | chr3_4:76083646-76083665 | None:intergenic | 45.0% | |
| GTCACTGTCATCTTCCTCTT+CGG | + | chr3_4:76083674-76083693 | None:intergenic | 45.0% | |
| ! | AAAAGCGTGACCAACTCCAT+CGG | - | chr3_4:76083803-76083822 | Msa0522760:intron | 45.0% |
| TTGAGCAGCAGGATACAACT+GGG | - | chr3_4:76083833-76083852 | Msa0522760:intron | 45.0% | |
| TGAAGTTGAAGAGGAAGACG+AGG | - | chr3_4:76083912-76083931 | Msa0522760:CDS | 45.0% | |
| GATGATCCCGCAGATGTTTA+CGG | - | chr3_4:76084029-76084048 | Msa0522760:intron | 45.0% | |
| !! | GGATAAAGGAGCACTTCATC+AGG | + | chr3_4:76084607-76084626 | None:intergenic | 45.0% |
| !! | ACCTTCAGTGTTGATGTCAG+AGG | - | chr3_4:76084894-76084913 | Msa0522760:intron | 45.0% |
| TCCTCTGACATCAACACTGA+AGG | + | chr3_4:76084898-76084917 | None:intergenic | 45.0% | |
| TCTACTGTCATACTCACTCC+TGG | - | chr3_4:76085220-76085239 | Msa0522760:CDS | 45.0% | |
| TCACTCCTGGTTTCTCTGTT+CGG | - | chr3_4:76085233-76085252 | Msa0522760:CDS | 45.0% | |
| TACAACCGAACAGAGAAACC+AGG | + | chr3_4:76085241-76085260 | None:intergenic | 45.0% | |
| ! | AAGCGTTGTGTCAAGAATGC+CGG | - | chr3_4:76085411-76085430 | Msa0522760:CDS | 45.0% |
| !! | ATTTAAATAGTATTTAAAAA+AGG | + | chr3_4:76085172-76085191 | None:intergenic | 5.0% |
| !! | CGTTCGATGATGGGAGAAGA+AGG | + | chr3_4:76081460-76081479 | None:intergenic | 50.0% |
| ATTTGATTGGGGACGAAGGG+GGG | + | chr3_4:76081531-76081550 | None:intergenic | 50.0% | |
| !! | CGAACAGAATTCTGGCTTGG+AGG | - | chr3_4:76081561-76081580 | Msa0522760:CDS | 50.0% |
| !! | TCTGGCTTGGAGGAGTCAAT+TGG | - | chr3_4:76081571-76081590 | Msa0522760:CDS | 50.0% |
| ! | TTTGGGTGCGAAGAGGGTTT+TGG | - | chr3_4:76081660-76081679 | Msa0522760:CDS | 50.0% |
| !! | GCGAAGAAGTCTCTGAGACT+CGG | + | chr3_4:76082049-76082068 | None:intergenic | 50.0% |
| GAGTCTCAGAGACTTCTTCG+CGG | - | chr3_4:76082048-76082067 | Msa0522760:intron | 50.0% | |
| TCAGAGACTTCTTCGCGGTA+TGG | - | chr3_4:76082053-76082072 | Msa0522760:intron | 50.0% | |
| ! | GAAATCGGCTTCTGAACCAG+AGG | + | chr3_4:76082188-76082207 | None:intergenic | 50.0% |
| ATCTCTTCACTAGGATGGCG+AGG | + | chr3_4:76082411-76082430 | None:intergenic | 50.0% | |
| !! | AGCTCCTGTTGATGATACCC+AGG | - | chr3_4:76082948-76082967 | Msa0522760:CDS | 50.0% |
| AACACAGTGCCACACTCACA+TGG | - | chr3_4:76083586-76083605 | Msa0522760:intron | 50.0% | |
| TCAGCTGATCCATGTGAGTG+TGG | + | chr3_4:76083598-76083617 | None:intergenic | 50.0% | |
| TGTCGATGAAGAAGCCGAAG+AGG | - | chr3_4:76083657-76083676 | Msa0522760:intron | 50.0% | |
| CTTGAGCAGCAGGATACAAC+TGG | - | chr3_4:76083832-76083851 | Msa0522760:intron | 50.0% | |
| CTGATGAGGAAACTGAGGAG+AGG | - | chr3_4:76084076-76084095 | Msa0522760:intron | 50.0% | |
| !! | CTGCTGCTTTCATCTTCAGC+CGG | + | chr3_4:76084313-76084332 | None:intergenic | 50.0% |
| GGCTGAAGATGAAAGCAGCA+GGG | - | chr3_4:76084312-76084331 | Msa0522760:intron | 50.0% | |
| GCTGAAGATGAAAGCAGCAG+GGG | - | chr3_4:76084313-76084332 | Msa0522760:intron | 50.0% | |
| !! | TGCTAGTCTTTCCGTGCGTT+TGG | - | chr3_4:76085580-76085599 | Msa0522760:CDS | 50.0% |
| !! | GCTAGTCTTTCCGTGCGTTT+GGG | - | chr3_4:76085581-76085600 | Msa0522760:CDS | 50.0% |
| !! | TCCGTGCGTTTGGGTTTTGT+TGG | - | chr3_4:76085590-76085609 | Msa0522760:CDS | 50.0% |
| GCCAACAAAACCCAAACGCA+CGG | + | chr3_4:76085594-76085613 | None:intergenic | 50.0% | |
| TTGTTGGCCAGTTCCCTTTG+TGG | - | chr3_4:76085606-76085625 | Msa0522760:exon | 50.0% | |
| CTGGTATCCACAAAGGGAAC+TGG | + | chr3_4:76085616-76085635 | None:intergenic | 50.0% | |
| GGCTTGGAGGAGTCAATTGG+AGG | - | chr3_4:76081574-76081593 | Msa0522760:CDS | 55.0% | |
| TGGACGATGAACTTGACGCC+AGG | - | chr3_4:76081695-76081714 | Msa0522760:CDS | 55.0% | |
| GGACGATGAACTTGACGCCA+GGG | - | chr3_4:76081696-76081715 | Msa0522760:CDS | 55.0% | |
| GGCTTCTGAACCAGAGGAAC+AGG | + | chr3_4:76082182-76082201 | None:intergenic | 55.0% | |
| TTCTCTGCAGGGCATGTAGC+TGG | + | chr3_4:76082471-76082490 | None:intergenic | 55.0% | |
| TTCCAGGTCTTCCGATGACG+AGG | - | chr3_4:76083549-76083568 | Msa0522760:intron | 55.0% | |
| GTGACCAACTCCATCGGCAA+TGG | - | chr3_4:76083809-76083828 | Msa0522760:intron | 55.0% | |
| CAAGCCATTGCCGATGGAGT+TGG | + | chr3_4:76083816-76083835 | None:intergenic | 55.0% | |
| GCAGCAGGATACAACTGGGA+TGG | - | chr3_4:76083837-76083856 | Msa0522760:intron | 55.0% | |
| CGGCTGAAGATGAAAGCAGC+AGG | - | chr3_4:76084311-76084330 | Msa0522760:intron | 55.0% | |
| GTCCTCGTCATCGGAAGACC+TGG | + | chr3_4:76083554-76083573 | None:intergenic | 60.0% | |
| TTGACAGGGTCACCGCTTGC+AGG | + | chr3_4:76083631-76083650 | None:intergenic | 60.0% | |
| TGCAAGCGGTGACCCTGTCA+AGG | - | chr3_4:76083630-76083649 | Msa0522760:intron | 60.0% | |
| GCTGCTCAAGCCATTGCCGA+TGG | + | chr3_4:76083822-76083841 | None:intergenic | 60.0% | |
| TCGGCAATGGCTTGAGCAGC+AGG | - | chr3_4:76083822-76083841 | Msa0522760:intron | 60.0% | |
| ATTGGGGACGAAGGGGGGAG+AGG | + | chr3_4:76081526-76081545 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 76081347 | 76085700 | 76081347 | ID=Msa0522760;Name=Msa0522760 |
| chr3_4 | mRNA | 76081347 | 76085700 | 76081347 | ID=Msa0522760-mRNA-1;Parent=Msa0522760;Name=Msa0522760-mRNA-1;_AED=0.09;_eAED=0.09;_QI=80|1|1|1|1|1|11|191|734 |
| chr3_4 | exon | 76081347 | 76081780 | 76081347 | ID=Msa0522760-mRNA-1:exon:21876;Parent=Msa0522760-mRNA-1 |
| chr3_4 | exon | 76082117 | 76082263 | 76082117 | ID=Msa0522760-mRNA-1:exon:21875;Parent=Msa0522760-mRNA-1 |
| chr3_4 | exon | 76082481 | 76082530 | 76082481 | ID=Msa0522760-mRNA-1:exon:21874;Parent=Msa0522760-mRNA-1 |
| chr3_4 | exon | 76082647 | 76082761 | 76082647 | ID=Msa0522760-mRNA-1:exon:21873;Parent=Msa0522760-mRNA-1 |
| chr3_4 | exon | 76082919 | 76083492 | 76082919 | ID=Msa0522760-mRNA-1:exon:21872;Parent=Msa0522760-mRNA-1 |
| chr3_4 | exon | 76083851 | 76083993 | 76083851 | ID=Msa0522760-mRNA-1:exon:21871;Parent=Msa0522760-mRNA-1 |
| chr3_4 | exon | 76084078 | 76084131 | 76084078 | ID=Msa0522760-mRNA-1:exon:21870;Parent=Msa0522760-mRNA-1 |
| chr3_4 | exon | 76084478 | 76084694 | 76084478 | ID=Msa0522760-mRNA-1:exon:21869;Parent=Msa0522760-mRNA-1 |
| chr3_4 | exon | 76084792 | 76084891 | 76084792 | ID=Msa0522760-mRNA-1:exon:21868;Parent=Msa0522760-mRNA-1 |
| chr3_4 | exon | 76084978 | 76085032 | 76084978 | ID=Msa0522760-mRNA-1:exon:21867;Parent=Msa0522760-mRNA-1 |
| chr3_4 | exon | 76085114 | 76085700 | 76085114 | ID=Msa0522760-mRNA-1:exon:21866;Parent=Msa0522760-mRNA-1 |
| chr3_4 | five_prime_UTR | 76085621 | 76085700 | 76085621 | ID=Msa0522760-mRNA-1:five_prime_utr;Parent=Msa0522760-mRNA-1 |
| chr3_4 | CDS | 76085114 | 76085620 | 76085114 | ID=Msa0522760-mRNA-1:cds;Parent=Msa0522760-mRNA-1 |
| chr3_4 | CDS | 76084978 | 76085032 | 76084978 | ID=Msa0522760-mRNA-1:cds;Parent=Msa0522760-mRNA-1 |
| chr3_4 | CDS | 76084792 | 76084891 | 76084792 | ID=Msa0522760-mRNA-1:cds;Parent=Msa0522760-mRNA-1 |
| chr3_4 | CDS | 76084478 | 76084694 | 76084478 | ID=Msa0522760-mRNA-1:cds;Parent=Msa0522760-mRNA-1 |
| chr3_4 | CDS | 76084078 | 76084131 | 76084078 | ID=Msa0522760-mRNA-1:cds;Parent=Msa0522760-mRNA-1 |
| chr3_4 | CDS | 76083851 | 76083993 | 76083851 | ID=Msa0522760-mRNA-1:cds;Parent=Msa0522760-mRNA-1 |
| chr3_4 | CDS | 76082919 | 76083492 | 76082919 | ID=Msa0522760-mRNA-1:cds;Parent=Msa0522760-mRNA-1 |
| chr3_4 | CDS | 76082647 | 76082761 | 76082647 | ID=Msa0522760-mRNA-1:cds;Parent=Msa0522760-mRNA-1 |
| chr3_4 | CDS | 76082481 | 76082530 | 76082481 | ID=Msa0522760-mRNA-1:cds;Parent=Msa0522760-mRNA-1 |
| chr3_4 | CDS | 76082117 | 76082263 | 76082117 | ID=Msa0522760-mRNA-1:cds;Parent=Msa0522760-mRNA-1 |
| chr3_4 | CDS | 76081538 | 76081780 | 76081538 | ID=Msa0522760-mRNA-1:cds;Parent=Msa0522760-mRNA-1 |
| chr3_4 | three_prime_UTR | 76081347 | 76081537 | 76081347 | ID=Msa0522760-mRNA-1:three_prime_utr;Parent=Msa0522760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
