Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478680 | XP_013462110.1 | 94.444 | 738 | 36 | 2 | 1 | 738 | 1 | 733 | 0.0 | 1222 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478680 | A0A072VD92 | 94.444 | 738 | 36 | 2 | 1 | 738 | 1 | 733 | 0.0 | 1222 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0378250 | Msa0478680 | 0.801369 | 9.303836e-49 | -8.615850e-47 |
| Msa0384300 | Msa0478680 | 0.944436 | 1.956116e-103 | -8.615850e-47 |
| Msa0478680 | Msa0522760 | 0.873046 | 1.991455e-67 | -8.615850e-47 |
| Msa0478680 | Msa0791730 | 0.955338 | 3.817561e-113 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478680 | MtrunA17_Chr3g0141461 | 94.444 | 738 | 36 | 2 | 1 | 738 | 1 | 733 | 0.0 | 1222 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478680 | AT1G75150.2 | 35.626 | 727 | 366 | 24 | 62 | 738 | 102 | 776 | 4.44e-66 | 234 |
| Msa0478680 | AT1G75150.3 | 35.873 | 722 | 363 | 23 | 62 | 734 | 102 | 772 | 8.68e-66 | 233 |
| Msa0478680 | AT1G75150.1 | 35.873 | 722 | 363 | 23 | 62 | 734 | 102 | 772 | 1.42e-65 | 232 |
Find 165 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGAGTGGATTATTTATT+AGG | 0.102842 | 3_3:-83553497 | Msa0478680:three_prime_UTR |
| TTGAACCGCAATTAAGTTTC+TGG | 0.119108 | 3_3:+83555303 | None:intergenic |
| GTCCGATCATCATATATATT+TGG | 0.169505 | 3_3:-83554323 | Msa0478680:CDS |
| CTGTGTATTTCTTTGGAATT+TGG | 0.196893 | 3_3:+83553870 | None:intergenic |
| GCATGAGGCTGGTGTTTCTT+TGG | 0.220493 | 3_3:+83556728 | None:intergenic |
| ATTTGTTCTGTGTATTTCTT+TGG | 0.223685 | 3_3:+83553863 | None:intergenic |
| TCTGAATCCGAACAGAATTC+TGG | 0.266048 | 3_3:-83557632 | Msa0478680:CDS |
| TGCTAGTCTTTCCGTGCGTT+TGG | 0.280883 | 3_3:-83553594 | Msa0478680:three_prime_UTR |
| TTGATAATTTAGTTATGTTT+TGG | 0.282411 | 3_3:+83554631 | None:intergenic |
| AAAGAGTGGATTATTTATTA+GGG | 0.285163 | 3_3:-83553496 | Msa0478680:three_prime_UTR |
| GATTCTTCTATTGTCTTCTC+TGG | 0.285609 | 3_3:+83557464 | None:intergenic |
| CTCTTATAAGCAGAAATCTT+TGG | 0.297379 | 3_3:+83553628 | None:intergenic |
| CATCACCTTCTTCATTATCT+TGG | 0.303254 | 3_3:+83555462 | None:intergenic |
| TTTGGGTGCGAAGAGGGTTT+TGG | 0.306380 | 3_3:-83557525 | Msa0478680:CDS |
| GTTCCTGATACCAAGATAAA+AGG | 0.307705 | 3_3:-83554806 | Msa0478680:CDS |
| CATTATCTTGGAAGCGTTGT+AGG | 0.308701 | 3_3:+83555474 | None:intergenic |
| CACAGTTGAGGAAAACGATT+TGG | 0.318265 | 3_3:-83557543 | Msa0478680:CDS |
| CGGTTGTATCTCAGATTATA+AGG | 0.320159 | 3_3:-83553921 | Msa0478680:intron |
| CGGATTCAGAGAATTTGATT+AGG | 0.333173 | 3_3:+83557645 | None:intergenic |
| GAGAAGACAATAGAAGAATC+TGG | 0.335300 | 3_3:-83557461 | Msa0478680:CDS |
| AAGTTCATTGAAAGCATAGA+TGG | 0.344830 | 3_3:+83556028 | None:intergenic |
| GGCTGGTGTTTCTTTGGATT+CGG | 0.354513 | 3_3:+83556734 | None:intergenic |
| GATGATCCCGCAGATGTTTA+CGG | 0.359304 | 3_3:-83555144 | Msa0478680:CDS |
| TCCGATCATCATATATATTT+GGG | 0.359571 | 3_3:-83554322 | Msa0478680:CDS |
| CTTAAGCTTTCGTTCGATGA+TGG | 0.368541 | 3_3:+83557718 | None:intergenic |
| GAAGCCGATTTCGTCTATAC+TGG | 0.369525 | 3_3:-83556989 | Msa0478680:CDS |
| TTAACCTTATCGAATTGAAA+TGG | 0.371697 | 3_3:+83557832 | None:intergenic |
| GTCACTGTCATCTTCCTCTT+CGG | 0.375822 | 3_3:+83555502 | None:intergenic |
| GCTAGTCTTTCCGTGCGTTT+GGG | 0.379200 | 3_3:-83553593 | Msa0478680:three_prime_UTR |
| TTGACAGGGTCACCGCTTGC+AGG | 0.380630 | 3_3:+83555545 | None:intergenic |
| TTAAGCACACTCCATATTGA+TGG | 0.384077 | 3_3:-83556690 | Msa0478680:CDS |
| TTCTCCTATTCCTTCTCCTA+TGG | 0.390342 | 3_3:-83556625 | Msa0478680:intron |
| GGATTCAGAGAATTTGATTA+GGG | 0.403316 | 3_3:+83557646 | None:intergenic |
| TCTATAAGAGAGGGACTGTT+TGG | 0.404011 | 3_3:+83555070 | None:intergenic |
| CTTGAGCAGCAGGATACAAC+TGG | 0.406510 | 3_3:-83555341 | Msa0478680:CDS |
| GGCTTCTGAACCAGAGGAAC+AGG | 0.406665 | 3_3:+83557006 | None:intergenic |
| CTTAATGATATGATAGCAAC+TGG | 0.412906 | 3_3:-83555419 | Msa0478680:CDS |
| GAAGAAGTTTCAGAGAAGAA+AGG | 0.421975 | 3_3:-83557374 | Msa0478680:CDS |
| CATCGTTGGAACCATCAATA+TGG | 0.423699 | 3_3:+83556679 | None:intergenic |
| TGCGTTTAAACCTGTTCCTC+TGG | 0.431252 | 3_3:-83557016 | Msa0478680:CDS |
| CGATCCATTTCAATTCGATA+AGG | 0.434556 | 3_3:-83557836 | Msa0478680:five_prime_UTR |
| TCAGCAATGGCTTGAGCAGC+AGG | 0.435184 | 3_3:-83555351 | Msa0478680:CDS |
| AAGAAGTTTCAGAGAAGAAA+GGG | 0.443719 | 3_3:-83557373 | Msa0478680:CDS |
| TTGTTGGCCAGTTCCCTTTG+TGG | 0.444676 | 3_3:-83553568 | Msa0478680:three_prime_UTR |
| TCTGGCTTGGAGGAGTCAAT+TGG | 0.447780 | 3_3:-83557614 | Msa0478680:CDS |
| TTAAGCTTTCGTTCGATGAT+GGG | 0.448047 | 3_3:+83557719 | None:intergenic |
| TTCTCTGCAGGGCATGAGGC+TGG | 0.450555 | 3_3:+83556717 | None:intergenic |
| CTTATTCAACTTCCCATTGA+GGG | 0.450679 | 3_3:+83556072 | None:intergenic |
| TGTCGCTGAAATTGAAAGCT+TGG | 0.451986 | 3_3:-83557585 | Msa0478680:CDS |
| GAATTTGGCAGAAACAACTT+TGG | 0.454646 | 3_3:+83553885 | None:intergenic |
| TTATCCAGTATAGACGAAAT+CGG | 0.455844 | 3_3:+83556985 | None:intergenic |
| ACAACGCTTTGTATGATTTG+AGG | 0.457574 | 3_3:+83553777 | None:intergenic |
| ACAGTTGAGGAAAACGATTT+GGG | 0.463125 | 3_3:-83557542 | Msa0478680:CDS |
| GTGCTTAAATCATTCTCTGC+AGG | 0.463971 | 3_3:+83556705 | None:intergenic |
| CTGGTATCCACAAAGGGAAC+TGG | 0.464311 | 3_3:+83553561 | None:intergenic |
| ATTAGGGACGAAGAGGGGAG+AGG | 0.467263 | 3_3:+83557662 | None:intergenic |
| TCATCGACAAAAGCCTTGAC+AGG | 0.469980 | 3_3:+83555530 | None:intergenic |
| CGGCTGAAGATGAAAGCAGC+AGG | 0.472410 | 3_3:-83554862 | Msa0478680:CDS |
| CGAATGATTTGCAGCATCGT+TGG | 0.475404 | 3_3:+83556665 | None:intergenic |
| AATTTGGCAGAAACAACTTT+GGG | 0.476283 | 3_3:+83553886 | None:intergenic |
| CTGCTGCTTTCATCTTCAGC+CGG | 0.477500 | 3_3:+83554863 | None:intergenic |
| ACTTACACATCATCATCAAC+AGG | 0.478005 | 3_3:+83555989 | None:intergenic |
| AATGTGTGGCATATCAAATA+TGG | 0.478119 | 3_3:+83554656 | None:intergenic |
| TATTGTCTTCTCTGGAACCC+TGG | 0.480622 | 3_3:+83557472 | None:intergenic |
| GCTGCTCAAGCCATTGCTGA+TGG | 0.482598 | 3_3:+83555354 | None:intergenic |
| AATACCTGGGTATCATCAAC+AGG | 0.482930 | 3_3:+83556217 | None:intergenic |
| AGAAGACAATAGAAGAATCT+GGG | 0.485094 | 3_3:-83557460 | Msa0478680:CDS |
| ATTAAAGAAGAGGCCCTCAA+TGG | 0.488027 | 3_3:-83556085 | Msa0478680:CDS |
| CTCCAAGCCAGAATTCTGTT+CGG | 0.488135 | 3_3:+83557625 | None:intergenic |
| CGTTCGATGATGGGAGAAGA+AGG | 0.495851 | 3_3:+83557728 | None:intergenic |
| AGAATAAGAAGTCGAAGAAG+AGG | 0.495870 | 3_3:-83557346 | Msa0478680:CDS |
| AGATGGGGCAAACACTTCTT+CGG | 0.497175 | 3_3:+83556045 | None:intergenic |
| GTCGCTGAAATTGAAAGCTT+GGG | 0.498541 | 3_3:-83557584 | Msa0478680:CDS |
| AAAGCTTAAGCGTTTGAAGA+AGG | 0.498790 | 3_3:-83557705 | Msa0478680:CDS |
| ACGAAGAAGTCAATTAAGAC+AGG | 0.499928 | 3_3:-83553700 | Msa0478680:CDS |
| CAATAAAAGAAAAGCCGAAA+AGG | 0.503415 | 3_3:-83557273 | Msa0478680:intron |
| ATGCCTTCTTCTCAAAAGCA+TGG | 0.508089 | 3_3:-83554356 | Msa0478680:CDS |
| TTAAAGAAGAGGCCCTCAAT+GGG | 0.508936 | 3_3:-83556084 | Msa0478680:CDS |
| GCGTTTGAAGAAGGCATCTA+GGG | 0.510976 | 3_3:-83557696 | Msa0478680:CDS |
| CTTGTCATTGTCCTCGTCAT+CGG | 0.511285 | 3_3:+83555613 | None:intergenic |
| TTATTGTTGCTGCATTACTC+TGG | 0.511413 | 3_3:+83553542 | None:intergenic |
| TAGTTATCTCTTCACTAGGA+TGG | 0.511460 | 3_3:+83556772 | None:intergenic |
| GAAATCATCGTCGCTATCCA+TGG | 0.514126 | 3_3:+83557760 | None:intergenic |
| CGAACAGAATTCTGGCTTGG+AGG | 0.514744 | 3_3:-83557624 | Msa0478680:CDS |
| CTAACCATAGGAGAAGGAAT+AGG | 0.518123 | 3_3:+83556621 | None:intergenic |
| ATCCGAACAGAATTCTGGCT+TGG | 0.521666 | 3_3:-83557627 | Msa0478680:CDS |
| CTTTATCCGTAAACATCTGC+GGG | 0.523224 | 3_3:+83555138 | None:intergenic |
| GGCTTGGAGGAGTCAATTGG+AGG | 0.523443 | 3_3:-83557611 | Msa0478680:CDS |
| AATTTGATTAGGGACGAAGA+GGG | 0.525468 | 3_3:+83557656 | None:intergenic |
| AAACGATTTGGGTGCGAAGA+GGG | 0.525559 | 3_3:-83557531 | Msa0478680:CDS |
| TTGAGATTTAGAAGTTGAAG+TGG | 0.527991 | 3_3:+83553837 | None:intergenic |
| TCTGAAACTTCTTCTACACT+AGG | 0.528815 | 3_3:+83557404 | None:intergenic |
| ATCTGACGATGAAGTTGAAG+AGG | 0.529423 | 3_3:-83555270 | Msa0478680:CDS |
| CGCTTCCAAGATAATGAAGA+AGG | 0.530519 | 3_3:-83555467 | Msa0478680:CDS |
| GTCAGAGGATTCTTCAGATA+CGG | 0.530551 | 3_3:-83554264 | Msa0478680:intron |
| AGAGTCAAATGTATCACTGA+TGG | 0.535371 | 3_3:-83553815 | Msa0478680:CDS |
| ATTGTCATGAAAAGAAACAT+TGG | 0.535846 | 3_3:+83556830 | None:intergenic |
| TTATTAGTTATCTCTTCACT+AGG | 0.535949 | 3_3:+83556768 | None:intergenic |
| GCTTATTCAACTTCCCATTG+AGG | 0.539326 | 3_3:+83556071 | None:intergenic |
| TAGGAGAAGGAATGATTTCA+CGG | 0.540542 | 3_3:+83556640 | None:intergenic |
| TGGACGATGAACTTGACGCC+AGG | 0.542343 | 3_3:-83557490 | Msa0478680:CDS |
| AGCGTTTGAAGAAGGCATCT+AGG | 0.544573 | 3_3:-83557697 | Msa0478680:CDS |
| AAGCGTTGTGTCAAGAATGC+CGG | 0.549269 | 3_3:-83553763 | Msa0478680:CDS |
| ATTTGATTAGGGACGAAGAG+GGG | 0.551530 | 3_3:+83557657 | None:intergenic |
| AATAAATGATATTAAAGAAG+AGG | 0.553156 | 3_3:-83556095 | Msa0478680:CDS |
| TCCCAAATATATATGATGAT+CGG | 0.554179 | 3_3:+83554321 | None:intergenic |
| ATCATTCTCTGCAGGGCATG+AGG | 0.561444 | 3_3:+83556713 | None:intergenic |
| TACTGGATAAAATTCGAAAG+AGG | 0.561886 | 3_3:-83556972 | Msa0478680:CDS |
| TTGATCTTCACAGCATCAGA+TGG | 0.562695 | 3_3:+83555185 | None:intergenic |
| CACTGATGGAGATATTAAGC+AGG | 0.563186 | 3_3:-83553801 | Msa0478680:CDS |
| AGTTCATTGAAAGCATAGAT+GGG | 0.567377 | 3_3:+83556029 | None:intergenic |
| CGAAGAAGTCAATTAAGACA+GGG | 0.568898 | 3_3:-83553699 | Msa0478680:CDS |
| ATTACTCTGGTATCCACAAA+GGG | 0.570256 | 3_3:+83553555 | None:intergenic |
| TTCCAGGTCTTCCGATGACG+AGG | 0.572092 | 3_3:-83555624 | Msa0478680:intron |
| GCCAACAAAACCCAAACGCA+CGG | 0.575823 | 3_3:+83553583 | None:intergenic |
| ATCTCTTCACTAGGATGGCG+AGG | 0.576933 | 3_3:+83556777 | None:intergenic |
| CAAGCCATTGCTGATGGAGT+TGG | 0.580859 | 3_3:+83555360 | None:intergenic |
| TGCTTAAATCATTCTCTGCA+GGG | 0.581616 | 3_3:+83556706 | None:intergenic |
| AACACAGTGCCACACTCACA+TGG | 0.587089 | 3_3:-83555587 | Msa0478680:CDS |
| TGATGTATGATGTGAAATGA+TGG | 0.587888 | 3_3:-83553667 | Msa0478680:three_prime_UTR |
| AAACATAACTAAATTATCAA+AGG | 0.587995 | 3_3:-83554628 | Msa0478680:intron |
| TGCAAGCGGTGACCCTGTCA+AGG | 0.589300 | 3_3:-83555543 | Msa0478680:CDS |
| ATAGGAGAAGGAATAGGAGA+AGG | 0.589513 | 3_3:+83556627 | None:intergenic |
| TCCTCTGACATCAACACTGA+AGG | 0.589871 | 3_3:+83554278 | None:intergenic |
| AACTCACAACTCTATAAGAG+AGG | 0.593686 | 3_3:+83555060 | None:intergenic |
| CATTACTCTGGTATCCACAA+AGG | 0.594086 | 3_3:+83553554 | None:intergenic |
| GACTTGTCTTTACCTGCAAG+CGG | 0.597345 | 3_3:-83555557 | Msa0478680:CDS |
| TGTGAAGATCAATCTGAAGA+AGG | 0.597643 | 3_3:-83555174 | Msa0478680:CDS |
| TGTCGATGAAGAAGCCGAAG+AGG | 0.600579 | 3_3:-83555516 | Msa0478680:CDS |
| ATATTTGATATGCCACACAT+TGG | 0.602377 | 3_3:-83554654 | Msa0478680:CDS |
| TATTGACTAACCATAGGAGA+AGG | 0.604545 | 3_3:+83556615 | None:intergenic |
| ACCTTCAGTGTTGATGTCAG+AGG | 0.605071 | 3_3:-83554279 | Msa0478680:CDS |
| GCAGCAGGATACAACTGGGA+TGG | 0.605675 | 3_3:-83555336 | Msa0478680:CDS |
| GATGATGGGAGAAGAAGGTA+AGG | 0.611648 | 3_3:+83557733 | None:intergenic |
| AGCTCCTGTTGATGATACCC+AGG | 0.611990 | 3_3:-83556221 | Msa0478680:intron |
| AGGAGCAGTGACGACAGTAA+CGG | 0.614383 | 3_3:-83557326 | Msa0478680:CDS |
| GAATTTGATTAGGGACGAAG+AGG | 0.616306 | 3_3:+83557655 | None:intergenic |
| GGACGATGAACTTGACGCCA+GGG | 0.623312 | 3_3:-83557489 | Msa0478680:CDS |
| TCAAAAGCATGGATCAAGCA+AGG | 0.624049 | 3_3:-83554345 | Msa0478680:CDS |
| AAATGTTACTGACACAGTTG+AGG | 0.627833 | 3_3:-83557555 | Msa0478680:CDS |
| GAAGACAATAGAAGAATCTG+GGG | 0.628399 | 3_3:-83557459 | Msa0478680:CDS |
| AAAACGATTTGGGTGCGAAG+AGG | 0.629285 | 3_3:-83557532 | Msa0478680:CDS |
| ACTCACAACTCTATAAGAGA+GGG | 0.630084 | 3_3:+83555061 | None:intergenic |
| GCGAAGAAGTCTCTGAGACT+CGG | 0.630403 | 3_3:+83557139 | None:intergenic |
| TCTTTATCCGTAAACATCTG+CGG | 0.632377 | 3_3:+83555137 | None:intergenic |
| GGCTGAAGATGAAAGCAGCA+GGG | 0.633689 | 3_3:-83554861 | Msa0478680:CDS |
| CGATGACGAGGACAATGACA+AGG | 0.636882 | 3_3:-83555612 | Msa0478680:CDS |
| GTGACCAACTCCATCAGCAA+TGG | 0.642435 | 3_3:-83555364 | Msa0478680:CDS |
| GAGTCTCAGAGACTTCTTCG+CGG | 0.647421 | 3_3:-83557137 | Msa0478680:intron |
| ATCATCTGATGAGGAAACTG+AGG | 0.653080 | 3_3:-83555102 | Msa0478680:CDS |
| CTACTCCAGAAACTTAATTG+CGG | 0.654037 | 3_3:-83555308 | Msa0478680:CDS |
| CATCGACAAAAGCCTTGACA+GGG | 0.655621 | 3_3:+83555531 | None:intergenic |
| GCTGAAGATGAAAGCAGCAG+GGG | 0.663173 | 3_3:-83554860 | Msa0478680:CDS |
| CTGATGAGGAAACTGAGGAG+AGG | 0.669168 | 3_3:-83555097 | Msa0478680:CDS |
| TCAGCTGATCCATGTGAGTG+TGG | 0.671330 | 3_3:+83555578 | None:intergenic |
| GTTCATTGAAAGCATAGATG+GGG | 0.673358 | 3_3:+83556030 | None:intergenic |
| GAAATCGGCTTCTGAACCAG+AGG | 0.680025 | 3_3:+83557000 | None:intergenic |
| TTGAGCAGCAGGATACAACT+GGG | 0.682128 | 3_3:-83555340 | Msa0478680:CDS |
| TCAGATCTCAGAATCAACCA+TGG | 0.682198 | 3_3:-83557777 | Msa0478680:exon |
| TGCATATGTATCATCTGATG+AGG | 0.684397 | 3_3:-83555111 | Msa0478680:CDS |
| GAAGAAGTCAATTAAGACAG+GGG | 0.696735 | 3_3:-83553698 | Msa0478680:CDS |
| TGAAGTTGAAGAGGAAGACG+AGG | 0.701412 | 3_3:-83555261 | Msa0478680:CDS |
| GCTGAAATTGAAAGCTTGGG+TGG | 0.702142 | 3_3:-83557581 | Msa0478680:CDS |
| GCTCAGAATCAATATCCACA+TGG | 0.713481 | 3_3:+83556799 | None:intergenic |
| TGACAATGATGGCTTCCATG+TGG | 0.715727 | 3_3:-83556814 | Msa0478680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGTTAAATAAAATTGT+AGG | - | chr3_3:83556793-83556812 | Msa0478680:CDS | 10.0% |
| !!! | ATTTGTTAAATAAAATTGTA+GGG | - | chr3_3:83556794-83556813 | Msa0478680:CDS | 10.0% |
| !! | ATTTAAATAGCATTTAAAAA+AGG | + | chr3_3:83557333-83557352 | None:intergenic | 10.0% |
| !! | ATTGTATAAAAATAATTCAC+TGG | + | chr3_3:83554101-83554120 | None:intergenic | 15.0% |
| !!! | TTTGTGTTAGTTTATTAAAT+GGG | - | chr3_3:83554997-83555016 | Msa0478680:intron | 15.0% |
| !! | AATAAATGATATTAAAGAAG+AGG | - | chr3_3:83555239-83555258 | Msa0478680:CDS | 15.0% |
| !! | TAAAATTAATAGATCTTACA+TGG | + | chr3_3:83556561-83556580 | None:intergenic | 15.0% |
| !!! | TTGATAATTTAGTTATGTTT+TGG | + | chr3_3:83556706-83556725 | None:intergenic | 15.0% |
| !! | AAACATAACTAAATTATCAA+AGG | - | chr3_3:83556706-83556725 | Msa0478680:CDS | 15.0% |
| !!! | TTTTATTTAACAAATTTGCT+GGG | + | chr3_3:83556789-83556808 | None:intergenic | 15.0% |
| !!! | ATTTTATTTAACAAATTTGC+TGG | + | chr3_3:83556790-83556809 | None:intergenic | 15.0% |
| !! | TTTGTTAAATAAAATTGTAG+GGG | - | chr3_3:83556795-83556814 | Msa0478680:CDS | 15.0% |
| !!! | TGTAGATTCATTGATTTTAT+AGG | - | chr3_3:83554142-83554161 | Msa0478680:intron | 20.0% |
| !!! | AGAATTTTTAAAGAAGTAAG+TGG | - | chr3_3:83554390-83554409 | Msa0478680:CDS | 20.0% |
| !! | TTACTTTAGATAAACACTAA+TGG | - | chr3_3:83554459-83554478 | Msa0478680:intron | 20.0% |
| !!! | CTTTGTGTTAGTTTATTAAA+TGG | - | chr3_3:83554996-83555015 | Msa0478680:intron | 20.0% |
| !!! | TTTATTTGTCTTTGATTTCT+AGG | - | chr3_3:83555197-83555216 | Msa0478680:CDS | 20.0% |
| !! | ATAAACTATAATCCTTACTT+TGG | - | chr3_3:83555477-83555496 | Msa0478680:CDS | 20.0% |
| !! | TAAACTATAATCCTTACTTT+GGG | - | chr3_3:83555478-83555497 | Msa0478680:CDS | 20.0% |
| !!! | ATTTTTAATTTCCAGAACAA+TGG | + | chr3_3:83555674-83555693 | None:intergenic | 20.0% |
| !!! | ATTTTAGTATTTCACGAAAT+TGG | - | chr3_3:83556575-83556594 | Msa0478680:intron | 20.0% |
| !! | ATAACTAAATTATCAAAGGT+AGG | - | chr3_3:83556710-83556729 | Msa0478680:CDS | 20.0% |
| !! | TTGTTAAATAAAATTGTAGG+GGG | - | chr3_3:83556796-83556815 | Msa0478680:CDS | 20.0% |
| !!! | ATATTTCAGTCATCTTTTAT+CGG | - | chr3_3:83556936-83556955 | Msa0478680:intron | 20.0% |
| !! | TAGCATAATTCATAGAAAAA+TGG | + | chr3_3:83557152-83557171 | None:intergenic | 20.0% |
| !! | ATGCTAAACATAAATTTAGT+TGG | + | chr3_3:83557233-83557252 | None:intergenic | 20.0% |
| !!! | AATTTTCAATACAAAAAGAG+TGG | - | chr3_3:83557824-83557843 | Msa0478680:five_prime_UTR | 20.0% |
| !!! | AAAAGAGTGGATTATTTATT+AGG | - | chr3_3:83557837-83557856 | Msa0478680:five_prime_UTR | 20.0% |
| ! | TTAACCTTATCGAATTGAAA+TGG | + | chr3_3:83553505-83553524 | None:intergenic | 25.0% |
| ! | CAGTAAACTAACTGAATAAT+TGG | + | chr3_3:83554273-83554292 | None:intergenic | 25.0% |
| !! | ATAAACACTAATGGATACTT+GGG | - | chr3_3:83554468-83554487 | Msa0478680:intron | 25.0% |
| ! | ATTGTCATGAAAAGAAACAT+TGG | + | chr3_3:83554507-83554526 | None:intergenic | 25.0% |
| ! | TTATTAGTTATCTCTTCACT+AGG | + | chr3_3:83554569-83554588 | None:intergenic | 25.0% |
| ! | AATTGTATTGTATAACTAGC+TGG | + | chr3_3:83554747-83554766 | None:intergenic | 25.0% |
| ! | GCTAGTTATACAATACAATT+TGG | - | chr3_3:83554747-83554766 | Msa0478680:intron | 25.0% |
| ! | ATTGATCTTGAATATCTAAC+TGG | - | chr3_3:83554812-83554831 | Msa0478680:CDS | 25.0% |
| ! | TTGATCTTGAATATCTAACT+GGG | - | chr3_3:83554813-83554832 | Msa0478680:CDS | 25.0% |
| ! | CTTCTATACTTTGTAACTTA+TGG | + | chr3_3:83554939-83554958 | None:intergenic | 25.0% |
| ! | AACTAACACAAAGATTTCAA+GGG | + | chr3_3:83554989-83555008 | None:intergenic | 25.0% |
| ! | AAACTAACACAAAGATTTCA+AGG | + | chr3_3:83554990-83555009 | None:intergenic | 25.0% |
| !!! | AAGAAAGCATCTGAATAAAT+GGG | + | chr3_3:83555149-83555168 | None:intergenic | 25.0% |
| !!! | TAAGAAAGCATCTGAATAAA+TGG | + | chr3_3:83555150-83555169 | None:intergenic | 25.0% |
| ! | ATAGACAATGAAACTTTATG+TGG | + | chr3_3:83555419-83555438 | None:intergenic | 25.0% |
| ! | TAGCTATATGGTTGTTAATT+TGG | - | chr3_3:83555508-83555527 | Msa0478680:CDS | 25.0% |
| !!! | GTTAATTTGGATTTTTACGT+TGG | - | chr3_3:83555521-83555540 | Msa0478680:CDS | 25.0% |
| !! | ATTTTTACGTTGGAAAATTC+TGG | - | chr3_3:83555531-83555550 | Msa0478680:CDS | 25.0% |
| ! | TATGATGAGAAAGTAAATGA+TGG | - | chr3_3:83555560-83555579 | Msa0478680:CDS | 25.0% |
| ! | GTTAAAGGAAAAAGATAAAC+AGG | + | chr3_3:83555600-83555619 | None:intergenic | 25.0% |
| ! | TACACTATGGAAGAATTAAA+AGG | + | chr3_3:83555632-83555651 | None:intergenic | 25.0% |
| !!! | TTTTAATTCTTCCATAGTGT+AGG | - | chr3_3:83555631-83555650 | Msa0478680:intron | 25.0% |
| ! | TCAAAATTGTAATGTGTAAC+AGG | - | chr3_3:83556425-83556444 | Msa0478680:intron | 25.0% |
| ! | TCCGATCATCATATATATTT+GGG | - | chr3_3:83557012-83557031 | Msa0478680:CDS | 25.0% |
| ! | TCCCAAATATATATGATGAT+CGG | + | chr3_3:83557016-83557035 | None:intergenic | 25.0% |
| ! | TTCATCAGTTGAAATTCATA+TGG | - | chr3_3:83557205-83557224 | Msa0478680:intron | 25.0% |
| ! | AATAGCATTTAAAAAAGGAG+AGG | + | chr3_3:83557328-83557347 | None:intergenic | 25.0% |
| ! | ATTTGTTCTGTGTATTTCTT+TGG | + | chr3_3:83557474-83557493 | None:intergenic | 25.0% |
| !!! | ACTTTTTGGTTTTTGGAAAC+AGG | + | chr3_3:83553532-83553551 | None:intergenic | 30.0% |
| GGATTCAGAGAATTTGATTA+GGG | + | chr3_3:83553691-83553710 | None:intergenic | 30.0% | |
| AGAAGACAATAGAAGAATCT+GGG | - | chr3_3:83553874-83553893 | Msa0478680:CDS | 30.0% | |
| AAGAAGTTTCAGAGAAGAAA+GGG | - | chr3_3:83553940-83553959 | Msa0478680:intron | 30.0% | |
| ! | CTTTTCGGCTTTTCTTTTAT+TGG | + | chr3_3:83554063-83554082 | None:intergenic | 30.0% |
| CAATAAAAGAAAAGCCGAAA+AGG | - | chr3_3:83554061-83554080 | Msa0478680:intron | 30.0% | |
| ! | AAAACGCATACAAACCTTTT+CGG | + | chr3_3:83554078-83554097 | None:intergenic | 30.0% |
| TTATCCAGTATAGACGAAAT+CGG | + | chr3_3:83554352-83554371 | None:intergenic | 30.0% | |
| TACTGGATAAAATTCGAAAG+AGG | - | chr3_3:83554362-83554381 | Msa0478680:CDS | 30.0% | |
| ! | GATAAACACTAATGGATACT+TGG | - | chr3_3:83554467-83554486 | Msa0478680:intron | 30.0% |
| ! | GTTTCTTTTCATGACAATGA+TGG | - | chr3_3:83554509-83554528 | Msa0478680:intron | 30.0% |
| TGATCTTGAATATCTAACTG+GGG | - | chr3_3:83554814-83554833 | Msa0478680:CDS | 30.0% | |
| GTTTATTAAATGGGAGATGT+TGG | - | chr3_3:83555006-83555025 | Msa0478680:intron | 30.0% | |
| ! | TCAAAGACAAATAAAGCACT+TGG | + | chr3_3:83555192-83555211 | None:intergenic | 30.0% |
| ! | AGTTCATTGAAAGCATAGAT+GGG | + | chr3_3:83555308-83555327 | None:intergenic | 30.0% |
| ! | AAGTTCATTGAAAGCATAGA+TGG | + | chr3_3:83555309-83555328 | None:intergenic | 30.0% |
| ! | CTTTTTCCTTTAACAAACCT+TGG | - | chr3_3:83555606-83555625 | Msa0478680:CDS | 30.0% |
| CTTAATGATATGATAGCAAC+TGG | - | chr3_3:83555915-83555934 | Msa0478680:intron | 30.0% | |
| !!! | TATTGCTGTCACTTTGATTT+TGG | - | chr3_3:83556324-83556343 | Msa0478680:intron | 30.0% |
| AATGTGTGGCATATCAAATA+TGG | + | chr3_3:83556681-83556700 | None:intergenic | 30.0% | |
| ATATTTGATATGCCACACAT+TGG | - | chr3_3:83556680-83556699 | Msa0478680:CDS | 30.0% | |
| !! | TAACAAATTTGCTGGGATAA+AGG | + | chr3_3:83556782-83556801 | None:intergenic | 30.0% |
| ! | TGCTGATAAAAACAGTTTTG+TGG | + | chr3_3:83556868-83556887 | None:intergenic | 30.0% |
| GTCCGATCATCATATATATT+TGG | - | chr3_3:83557011-83557030 | Msa0478680:CDS | 30.0% | |
| TAATACTACTAGAACTGTGA+TGG | - | chr3_3:83557277-83557296 | Msa0478680:CDS | 30.0% | |
| AATTTGGCAGAAACAACTTT+GGG | + | chr3_3:83557451-83557470 | None:intergenic | 30.0% | |
| !! | CTGTGTATTTCTTTGGAATT+TGG | + | chr3_3:83557467-83557486 | None:intergenic | 30.0% |
| TTGAGATTTAGAAGTTGAAG+TGG | + | chr3_3:83557500-83557519 | None:intergenic | 30.0% | |
| TGATGTATGATGTGAAATGA+TGG | - | chr3_3:83557667-83557686 | Msa0478680:CDS | 30.0% | |
| CTCTTATAAGCAGAAATCTT+TGG | + | chr3_3:83557709-83557728 | None:intergenic | 30.0% | |
| CGATCCATTTCAATTCGATA+AGG | - | chr3_3:83553498-83553517 | Msa0478680:three_prime_UTR | 35.0% | |
| !!! | GAACGACACTTTTTGGTTTT+TGG | + | chr3_3:83553539-83553558 | None:intergenic | 35.0% |
| TTAAGCTTTCGTTCGATGAT+GGG | + | chr3_3:83553618-83553637 | None:intergenic | 35.0% | |
| AAAGCTTAAGCGTTTGAAGA+AGG | - | chr3_3:83553629-83553648 | Msa0478680:three_prime_UTR | 35.0% | |
| AATTTGATTAGGGACGAAGA+GGG | + | chr3_3:83553681-83553700 | None:intergenic | 35.0% | |
| CGGATTCAGAGAATTTGATT+AGG | + | chr3_3:83553692-83553711 | None:intergenic | 35.0% | |
| AAATGTTACTGACACAGTTG+AGG | - | chr3_3:83553779-83553798 | Msa0478680:CDS | 35.0% | |
| ACAGTTGAGGAAAACGATTT+GGG | - | chr3_3:83553792-83553811 | Msa0478680:CDS | 35.0% | |
| !!! | GGTTTTGGAGTTTGAATCTA+TGG | - | chr3_3:83553824-83553843 | Msa0478680:CDS | 35.0% |
| GATTCTTCTATTGTCTTCTC+TGG | + | chr3_3:83553873-83553892 | None:intergenic | 35.0% | |
| GAGAAGACAATAGAAGAATC+TGG | - | chr3_3:83553873-83553892 | Msa0478680:CDS | 35.0% | |
| GAAGACAATAGAAGAATCTG+GGG | - | chr3_3:83553875-83553894 | Msa0478680:CDS | 35.0% | |
| ! | TCTGAAACTTCTTCTACACT+AGG | + | chr3_3:83553933-83553952 | None:intergenic | 35.0% |
| GAAGAAGTTTCAGAGAAGAA+AGG | - | chr3_3:83553939-83553958 | Msa0478680:intron | 35.0% | |
| AGAATAAGAAGTCGAAGAAG+AGG | - | chr3_3:83553988-83554007 | Msa0478680:intron | 35.0% | |
| !!! | TTCGCGGTATGGATTTTTTT+TGG | - | chr3_3:83554213-83554232 | Msa0478680:intron | 35.0% |
| TGTTTCAGCATGCACTTAAT+TGG | - | chr3_3:83554429-83554448 | Msa0478680:intron | 35.0% | |
| GTTTCAGCATGCACTTAATT+GGG | - | chr3_3:83554430-83554449 | Msa0478680:intron | 35.0% | |
| TAGTTATCTCTTCACTAGGA+TGG | + | chr3_3:83554565-83554584 | None:intergenic | 35.0% | |
| TGCTTAAATCATTCTCTGCA+GGG | + | chr3_3:83554631-83554650 | None:intergenic | 35.0% | |
| TTAAGCACACTCCATATTGA+TGG | - | chr3_3:83554644-83554663 | Msa0478680:CDS | 35.0% | |
| TAGGAGAAGGAATGATTTCA+CGG | + | chr3_3:83554697-83554716 | None:intergenic | 35.0% | |
| ! | TATTGACTAACCATAGGAGA+AGG | + | chr3_3:83554722-83554741 | None:intergenic | 35.0% |
| ! | CTGGAATATTGACTAACCAT+AGG | + | chr3_3:83554728-83554747 | None:intergenic | 35.0% |
| !! | CTGCTCTCACTATATTTTGA+TGG | - | chr3_3:83554864-83554883 | Msa0478680:CDS | 35.0% |
| AAATGGGTGACATAATACCT+GGG | + | chr3_3:83555133-83555152 | None:intergenic | 35.0% | |
| TAAATGGGTGACATAATACC+TGG | + | chr3_3:83555134-83555153 | None:intergenic | 35.0% | |
| CTTATTCAACTTCCCATTGA+GGG | + | chr3_3:83555265-83555284 | None:intergenic | 35.0% | |
| ! | GTTCATTGAAAGCATAGATG+GGG | + | chr3_3:83555307-83555326 | None:intergenic | 35.0% |
| ACTTACACATCATCATCAAC+AGG | + | chr3_3:83555348-83555367 | None:intergenic | 35.0% | |
| ATCAGCAACGATGAAACAAA+TGG | + | chr3_3:83555451-83555470 | None:intergenic | 35.0% | |
| !! | AAAAGGCCAAGGTTTGTTAA+AGG | + | chr3_3:83555615-83555634 | None:intergenic | 35.0% |
| ATGGAAGAATTAAAAGGCCA+AGG | + | chr3_3:83555626-83555645 | None:intergenic | 35.0% | |
| AATTGAAGAGTCCTACACTA+TGG | + | chr3_3:83555645-83555664 | None:intergenic | 35.0% | |
| ! | CAATTTGCTTTCCATTGTTC+TGG | - | chr3_3:83555660-83555679 | Msa0478680:intron | 35.0% |
| CATCACCTTCTTCATTATCT+TGG | + | chr3_3:83555875-83555894 | None:intergenic | 35.0% | |
| ! | TGATGATGATGATGATATCG+AGG | - | chr3_3:83555890-83555909 | Msa0478680:intron | 35.0% |
| ! | TCACGCTTTTCTCTATCAAT+TGG | + | chr3_3:83555954-83555973 | None:intergenic | 35.0% |
| CTACTCCAGAAACTTAATTG+CGG | - | chr3_3:83556026-83556045 | Msa0478680:CDS | 35.0% | |
| TTGAACCGCAATTAAGTTTC+TGG | + | chr3_3:83556034-83556053 | None:intergenic | 35.0% | |
| TGTGAAGATCAATCTGAAGA+AGG | - | chr3_3:83556160-83556179 | Msa0478680:intron | 35.0% | |
| TCTTTATCCGTAAACATCTG+CGG | + | chr3_3:83556200-83556219 | None:intergenic | 35.0% | |
| TGCATATGTATCATCTGATG+AGG | - | chr3_3:83556223-83556242 | Msa0478680:CDS | 35.0% | |
| ACTCACAACTCTATAAGAGA+GGG | + | chr3_3:83556276-83556295 | None:intergenic | 35.0% | |
| AACTCACAACTCTATAAGAG+AGG | + | chr3_3:83556277-83556296 | None:intergenic | 35.0% | |
| GTTCCTGATACCAAGATAAA+AGG | - | chr3_3:83556528-83556547 | Msa0478680:intron | 35.0% | |
| ! | CTTCCTTTTATCTTGGTATC+AGG | + | chr3_3:83556534-83556553 | None:intergenic | 35.0% |
| ! | TGGAGTTCTTCCTTTTATCT+TGG | + | chr3_3:83556541-83556560 | None:intergenic | 35.0% |
| TCATAATCTTGAAGCCTGAT+TGG | + | chr3_3:83556621-83556640 | None:intergenic | 35.0% | |
| CAAGATTATGACCATGCTAA+CGG | - | chr3_3:83556630-83556649 | Msa0478680:CDS | 35.0% | |
| ! | CAAAGGTAGGTTACTTTGAA+CGG | - | chr3_3:83556723-83556742 | Msa0478680:CDS | 35.0% |
| GTTTAGCATGCATGATTTAG+TGG | - | chr3_3:83557244-83557263 | Msa0478680:intron | 35.0% | |
| CGGTTGTATCTCAGATTATA+AGG | - | chr3_3:83557413-83557432 | Msa0478680:CDS | 35.0% | |
| GAATTTGGCAGAAACAACTT+TGG | + | chr3_3:83557452-83557471 | None:intergenic | 35.0% | |
| AGAGTCAAATGTATCACTGA+TGG | - | chr3_3:83557519-83557538 | Msa0478680:CDS | 35.0% | |
| ACAACGCTTTGTATGATTTG+AGG | + | chr3_3:83557560-83557579 | None:intergenic | 35.0% | |
| ! | AGATTCATTTTGCTGAACTC+CGG | + | chr3_3:83557593-83557612 | None:intergenic | 35.0% |
| ACGAAGAAGTCAATTAAGAC+AGG | - | chr3_3:83557634-83557653 | Msa0478680:CDS | 35.0% | |
| CGAAGAAGTCAATTAAGACA+GGG | - | chr3_3:83557635-83557654 | Msa0478680:CDS | 35.0% | |
| GAAGAAGTCAATTAAGACAG+GGG | - | chr3_3:83557636-83557655 | Msa0478680:CDS | 35.0% | |
| ATTACTCTGGTATCCACAAA+GGG | + | chr3_3:83557782-83557801 | None:intergenic | 35.0% | |
| TTATTGTTGCTGCATTACTC+TGG | + | chr3_3:83557795-83557814 | None:intergenic | 35.0% | |
| ! | GAGATCTGAACGACACTTTT+TGG | + | chr3_3:83553546-83553565 | None:intergenic | 40.0% |
| TCAGATCTCAGAATCAACCA+TGG | - | chr3_3:83553557-83553576 | Msa0478680:three_prime_UTR | 40.0% | |
| CTTAAGCTTTCGTTCGATGA+TGG | + | chr3_3:83553619-83553638 | None:intergenic | 40.0% | |
| ATTTGATTAGGGACGAAGAG+GGG | + | chr3_3:83553680-83553699 | None:intergenic | 40.0% | |
| GAATTTGATTAGGGACGAAG+AGG | + | chr3_3:83553682-83553701 | None:intergenic | 40.0% | |
| TCTGAATCCGAACAGAATTC+TGG | - | chr3_3:83553702-83553721 | Msa0478680:CDS | 40.0% | |
| TGTCGCTGAAATTGAAAGCT+TGG | - | chr3_3:83553749-83553768 | Msa0478680:CDS | 40.0% | |
| GTCGCTGAAATTGAAAGCTT+GGG | - | chr3_3:83553750-83553769 | Msa0478680:CDS | 40.0% | |
| CACAGTTGAGGAAAACGATT+TGG | - | chr3_3:83553791-83553810 | Msa0478680:CDS | 40.0% | |
| ! | ACACTAATGGATACTTGGGT+TGG | - | chr3_3:83554472-83554491 | Msa0478680:intron | 40.0% |
| ! | CACTAATGGATACTTGGGTT+GGG | - | chr3_3:83554473-83554492 | Msa0478680:intron | 40.0% |
| GCTCAGAATCAATATCCACA+TGG | + | chr3_3:83554538-83554557 | None:intergenic | 40.0% | |
| GTGCTTAAATCATTCTCTGC+AGG | + | chr3_3:83554632-83554651 | None:intergenic | 40.0% | |
| CATCGTTGGAACCATCAATA+TGG | + | chr3_3:83554658-83554677 | None:intergenic | 40.0% | |
| ATAGGAGAAGGAATAGGAGA+AGG | + | chr3_3:83554710-83554729 | None:intergenic | 40.0% | |
| TTCTCCTATTCCTTCTCCTA+TGG | - | chr3_3:83554709-83554728 | Msa0478680:intron | 40.0% | |
| CTAACCATAGGAGAAGGAAT+AGG | + | chr3_3:83554716-83554735 | None:intergenic | 40.0% | |
| AATACCTGGGTATCATCAAC+AGG | + | chr3_3:83555120-83555139 | None:intergenic | 40.0% | |
| ATTAAAGAAGAGGCCCTCAA+TGG | - | chr3_3:83555249-83555268 | Msa0478680:CDS | 40.0% | |
| TTAAAGAAGAGGCCCTCAAT+GGG | - | chr3_3:83555250-83555269 | Msa0478680:CDS | 40.0% | |
| GCTTATTCAACTTCCCATTG+AGG | + | chr3_3:83555266-83555285 | None:intergenic | 40.0% | |
| CTTCAGATTTAGTCACTCAC+TGG | - | chr3_3:83555389-83555408 | Msa0478680:CDS | 40.0% | |
| TTGGGATGAGCTTAGCTATA+TGG | - | chr3_3:83555496-83555515 | Msa0478680:CDS | 40.0% | |
| !!! | GACAACCAATCCTTTTTTCC+AGG | - | chr3_3:83555694-83555713 | Msa0478680:intron | 40.0% |
| GAAGACCTGGAAAAAAGGAT+TGG | + | chr3_3:83555702-83555721 | None:intergenic | 40.0% | |
| !! | CATTATCTTGGAAGCGTTGT+AGG | + | chr3_3:83555863-83555882 | None:intergenic | 40.0% |
| CGCTTCCAAGATAATGAAGA+AGG | - | chr3_3:83555867-83555886 | Msa0478680:intron | 40.0% | |
| ATCTGACGATGAAGTTGAAG+AGG | - | chr3_3:83556064-83556083 | Msa0478680:CDS | 40.0% | |
| TTGATCTTCACAGCATCAGA+TGG | + | chr3_3:83556152-83556171 | None:intergenic | 40.0% | |
| CTTTATCCGTAAACATCTGC+GGG | + | chr3_3:83556199-83556218 | None:intergenic | 40.0% | |
| ATCATCTGATGAGGAAACTG+AGG | - | chr3_3:83556232-83556251 | Msa0478680:CDS | 40.0% | |
| TCTATAAGAGAGGGACTGTT+TGG | + | chr3_3:83556267-83556286 | None:intergenic | 40.0% | |
| TTCCATCTTTGCATGCACTA+AGG | - | chr3_3:83556363-83556382 | Msa0478680:intron | 40.0% | |
| TACCTTAGTGCATGCAAAGA+TGG | + | chr3_3:83556368-83556387 | None:intergenic | 40.0% | |
| ! | GAACGCTCAATTCTTTTCAC+CGG | - | chr3_3:83556452-83556471 | Msa0478680:intron | 40.0% |
| CTGATTGGTGTACATTGCAT+AGG | + | chr3_3:83556606-83556625 | None:intergenic | 40.0% | |
| CTATGCAATGTACACCAATC+AGG | - | chr3_3:83556604-83556623 | Msa0478680:intron | 40.0% | |
| AATGGAACAAACCGTTAGCA+TGG | + | chr3_3:83556644-83556663 | None:intergenic | 40.0% | |
| ATGGCTGCAGCATACAATAA+TGG | + | chr3_3:83556662-83556681 | None:intergenic | 40.0% | |
| !!! | GTTATGTTTTGGCCAATGTG+TGG | + | chr3_3:83556695-83556714 | None:intergenic | 40.0% |
| ATGCCTTCTTCTCAAAAGCA+TGG | - | chr3_3:83556978-83556997 | Msa0478680:CDS | 40.0% | |
| !! | GATCCATGCTTTTGAGAAGA+AGG | + | chr3_3:83556984-83557003 | None:intergenic | 40.0% |
| ! | TCAAAAGCATGGATCAAGCA+AGG | - | chr3_3:83556989-83557008 | Msa0478680:CDS | 40.0% |
| GTCAGAGGATTCTTCAGATA+CGG | - | chr3_3:83557070-83557089 | Msa0478680:intron | 40.0% | |
| GCATGATTTAGTGGAATCTG+TGG | - | chr3_3:83557253-83557272 | Msa0478680:intron | 40.0% | |
| CACTGATGGAGATATTAAGC+AGG | - | chr3_3:83557533-83557552 | Msa0478680:CDS | 40.0% | |
| CATTACTCTGGTATCCACAA+AGG | + | chr3_3:83557783-83557802 | None:intergenic | 40.0% | |
| GAAATCATCGTCGCTATCCA+TGG | + | chr3_3:83553577-83553596 | None:intergenic | 45.0% | |
| !! | GATGATGGGAGAAGAAGGTA+AGG | + | chr3_3:83553604-83553623 | None:intergenic | 45.0% |
| !! | AGCGTTTGAAGAAGGCATCT+AGG | - | chr3_3:83553637-83553656 | Msa0478680:three_prime_UTR | 45.0% |
| !! | GCGTTTGAAGAAGGCATCTA+GGG | - | chr3_3:83553638-83553657 | Msa0478680:three_prime_UTR | 45.0% |
| ! | ATCCGAACAGAATTCTGGCT+TGG | - | chr3_3:83553707-83553726 | Msa0478680:CDS | 45.0% |
| CTCCAAGCCAGAATTCTGTT+CGG | + | chr3_3:83553712-83553731 | None:intergenic | 45.0% | |
| GCTGAAATTGAAAGCTTGGG+TGG | - | chr3_3:83553753-83553772 | Msa0478680:CDS | 45.0% | |
| ! | AAAACGATTTGGGTGCGAAG+AGG | - | chr3_3:83553802-83553821 | Msa0478680:CDS | 45.0% |
| ! | AAACGATTTGGGTGCGAAGA+GGG | - | chr3_3:83553803-83553822 | Msa0478680:CDS | 45.0% |
| !! | TATTGTCTTCTCTGGAACCC+TGG | + | chr3_3:83553865-83553884 | None:intergenic | 45.0% |
| TGCGTTTAAACCTGTTCCTC+TGG | - | chr3_3:83554318-83554337 | Msa0478680:CDS | 45.0% | |
| ! | GAAGCCGATTTCGTCTATAC+TGG | - | chr3_3:83554345-83554364 | Msa0478680:CDS | 45.0% |
| TGACAATGATGGCTTCCATG+TGG | - | chr3_3:83554520-83554539 | Msa0478680:intron | 45.0% | |
| GGCTGGTGTTTCTTTGGATT+CGG | + | chr3_3:83554603-83554622 | None:intergenic | 45.0% | |
| ! | CGAATGATTTGCAGCATCGT+TGG | + | chr3_3:83554672-83554691 | None:intergenic | 45.0% |
| CATTGCTTACGCTGAGTTTC+AGG | - | chr3_3:83555059-83555078 | Msa0478680:intron | 45.0% | |
| TTACGCTGAGTTTCAGGATG+TGG | - | chr3_3:83555065-83555084 | Msa0478680:intron | 45.0% | |
| AGATGGGGCAAACACTTCTT+CGG | + | chr3_3:83555292-83555311 | None:intergenic | 45.0% | |
| GCTAAGCTCATCCCAAAGTA+AGG | + | chr3_3:83555492-83555511 | None:intergenic | 45.0% | |
| CATCGGAAGACCTGGAAAAA+AGG | + | chr3_3:83555707-83555726 | None:intergenic | 45.0% | |
| CTTGTCATTGTCCTCGTCAT+CGG | + | chr3_3:83555724-83555743 | None:intergenic | 45.0% | |
| GACTTGTCTTTACCTGCAAG+CGG | - | chr3_3:83555777-83555796 | Msa0478680:intron | 45.0% | |
| CATCGACAAAAGCCTTGACA+GGG | + | chr3_3:83555806-83555825 | None:intergenic | 45.0% | |
| TCATCGACAAAAGCCTTGAC+AGG | + | chr3_3:83555807-83555826 | None:intergenic | 45.0% | |
| GTCACTGTCATCTTCCTCTT+CGG | + | chr3_3:83555835-83555854 | None:intergenic | 45.0% | |
| TTGAGCAGCAGGATACAACT+GGG | - | chr3_3:83555994-83556013 | Msa0478680:intron | 45.0% | |
| TGAAGTTGAAGAGGAAGACG+AGG | - | chr3_3:83556073-83556092 | Msa0478680:CDS | 45.0% | |
| GATGATCCCGCAGATGTTTA+CGG | - | chr3_3:83556190-83556209 | Msa0478680:intron | 45.0% | |
| !! | GGATAAAGGAGCACTTCATC+AGG | + | chr3_3:83556768-83556787 | None:intergenic | 45.0% |
| !! | ACCTTCAGTGTTGATGTCAG+AGG | - | chr3_3:83557055-83557074 | Msa0478680:intron | 45.0% |
| TCCTCTGACATCAACACTGA+AGG | + | chr3_3:83557059-83557078 | None:intergenic | 45.0% | |
| TCTACTGTCATACTCACTCC+TGG | - | chr3_3:83557380-83557399 | Msa0478680:CDS | 45.0% | |
| TCACTCCTGGTTTCTCTGTT+CGG | - | chr3_3:83557393-83557412 | Msa0478680:CDS | 45.0% | |
| TACAACCGAACAGAGAAACC+AGG | + | chr3_3:83557401-83557420 | None:intergenic | 45.0% | |
| ! | AAGCGTTGTGTCAAGAATGC+CGG | - | chr3_3:83557571-83557590 | Msa0478680:CDS | 45.0% |
| !! | CGTTCGATGATGGGAGAAGA+AGG | + | chr3_3:83553609-83553628 | None:intergenic | 50.0% |
| !! | CGAACAGAATTCTGGCTTGG+AGG | - | chr3_3:83553710-83553729 | Msa0478680:CDS | 50.0% |
| !! | TCTGGCTTGGAGGAGTCAAT+TGG | - | chr3_3:83553720-83553739 | Msa0478680:CDS | 50.0% |
| ! | TTTGGGTGCGAAGAGGGTTT+TGG | - | chr3_3:83553809-83553828 | Msa0478680:CDS | 50.0% |
| AGGAGCAGTGACGACAGTAA+CGG | - | chr3_3:83554008-83554027 | Msa0478680:intron | 50.0% | |
| !! | GCGAAGAAGTCTCTGAGACT+CGG | + | chr3_3:83554198-83554217 | None:intergenic | 50.0% |
| GAGTCTCAGAGACTTCTTCG+CGG | - | chr3_3:83554197-83554216 | Msa0478680:intron | 50.0% | |
| TCAGAGACTTCTTCGCGGTA+TGG | - | chr3_3:83554202-83554221 | Msa0478680:intron | 50.0% | |
| ! | GAAATCGGCTTCTGAACCAG+AGG | + | chr3_3:83554337-83554356 | None:intergenic | 50.0% |
| ATCTCTTCACTAGGATGGCG+AGG | + | chr3_3:83554560-83554579 | None:intergenic | 50.0% | |
| GCATGAGGCTGGTGTTTCTT+TGG | + | chr3_3:83554609-83554628 | None:intergenic | 50.0% | |
| ATCATTCTCTGCAGGGCATG+AGG | + | chr3_3:83554624-83554643 | None:intergenic | 50.0% | |
| !! | AGCTCCTGTTGATGATACCC+AGG | - | chr3_3:83555113-83555132 | Msa0478680:CDS | 50.0% |
| CGATGACGAGGACAATGACA+AGG | - | chr3_3:83555722-83555741 | Msa0478680:intron | 50.0% | |
| AACACAGTGCCACACTCACA+TGG | - | chr3_3:83555747-83555766 | Msa0478680:intron | 50.0% | |
| TCAGCTGATCCATGTGAGTG+TGG | + | chr3_3:83555759-83555778 | None:intergenic | 50.0% | |
| TGTCGATGAAGAAGCCGAAG+AGG | - | chr3_3:83555818-83555837 | Msa0478680:intron | 50.0% | |
| GTGACCAACTCCATCAGCAA+TGG | - | chr3_3:83555970-83555989 | Msa0478680:intron | 50.0% | |
| CAAGCCATTGCTGATGGAGT+TGG | + | chr3_3:83555977-83555996 | None:intergenic | 50.0% | |
| CTTGAGCAGCAGGATACAAC+TGG | - | chr3_3:83555993-83556012 | Msa0478680:intron | 50.0% | |
| CTGATGAGGAAACTGAGGAG+AGG | - | chr3_3:83556237-83556256 | Msa0478680:CDS | 50.0% | |
| !! | CTGCTGCTTTCATCTTCAGC+CGG | + | chr3_3:83556474-83556493 | None:intergenic | 50.0% |
| GGCTGAAGATGAAAGCAGCA+GGG | - | chr3_3:83556473-83556492 | Msa0478680:intron | 50.0% | |
| GCTGAAGATGAAAGCAGCAG+GGG | - | chr3_3:83556474-83556493 | Msa0478680:intron | 50.0% | |
| !! | TGCTAGTCTTTCCGTGCGTT+TGG | - | chr3_3:83557740-83557759 | Msa0478680:CDS | 50.0% |
| !! | GCTAGTCTTTCCGTGCGTTT+GGG | - | chr3_3:83557741-83557760 | Msa0478680:CDS | 50.0% |
| !! | TCCGTGCGTTTGGGTTTTGT+TGG | - | chr3_3:83557750-83557769 | Msa0478680:CDS | 50.0% |
| GCCAACAAAACCCAAACGCA+CGG | + | chr3_3:83557754-83557773 | None:intergenic | 50.0% | |
| TTGTTGGCCAGTTCCCTTTG+TGG | - | chr3_3:83557766-83557785 | Msa0478680:exon | 50.0% | |
| CTGGTATCCACAAAGGGAAC+TGG | + | chr3_3:83557776-83557795 | None:intergenic | 50.0% | |
| ATTAGGGACGAAGAGGGGAG+AGG | + | chr3_3:83553675-83553694 | None:intergenic | 55.0% | |
| GGCTTGGAGGAGTCAATTGG+AGG | - | chr3_3:83553723-83553742 | Msa0478680:CDS | 55.0% | |
| TGGACGATGAACTTGACGCC+AGG | - | chr3_3:83553844-83553863 | Msa0478680:CDS | 55.0% | |
| GGACGATGAACTTGACGCCA+GGG | - | chr3_3:83553845-83553864 | Msa0478680:CDS | 55.0% | |
| GGCTTCTGAACCAGAGGAAC+AGG | + | chr3_3:83554331-83554350 | None:intergenic | 55.0% | |
| TTCCAGGTCTTCCGATGACG+AGG | - | chr3_3:83555710-83555729 | Msa0478680:intron | 55.0% | |
| GCTGCTCAAGCCATTGCTGA+TGG | + | chr3_3:83555983-83556002 | None:intergenic | 55.0% | |
| TCAGCAATGGCTTGAGCAGC+AGG | - | chr3_3:83555983-83556002 | Msa0478680:intron | 55.0% | |
| GCAGCAGGATACAACTGGGA+TGG | - | chr3_3:83555998-83556017 | Msa0478680:CDS | 55.0% | |
| CGGCTGAAGATGAAAGCAGC+AGG | - | chr3_3:83556472-83556491 | Msa0478680:intron | 55.0% | |
| TTCTCTGCAGGGCATGAGGC+TGG | + | chr3_3:83554620-83554639 | None:intergenic | 60.0% | |
| GTCCTCGTCATCGGAAGACC+TGG | + | chr3_3:83555715-83555734 | None:intergenic | 60.0% | |
| TTGACAGGGTCACCGCTTGC+AGG | + | chr3_3:83555792-83555811 | None:intergenic | 60.0% | |
| TGCAAGCGGTGACCCTGTCA+AGG | - | chr3_3:83555791-83555810 | Msa0478680:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 83553496 | 83557860 | 83553496 | ID=Msa0478680;Name=Msa0478680 |
| chr3_3 | mRNA | 83553496 | 83557860 | 83553496 | ID=Msa0478680-mRNA-1;Parent=Msa0478680;Name=Msa0478680-mRNA-1;_AED=0.09;_eAED=0.09;_QI=80|1|1|1|1|1|11|191|738 |
| chr3_3 | exon | 83553496 | 83553929 | 83553496 | ID=Msa0478680-mRNA-1:exon:23502;Parent=Msa0478680-mRNA-1 |
| chr3_3 | exon | 83554265 | 83554411 | 83554265 | ID=Msa0478680-mRNA-1:exon:23501;Parent=Msa0478680-mRNA-1 |
| chr3_3 | exon | 83554629 | 83554678 | 83554629 | ID=Msa0478680-mRNA-1:exon:23500;Parent=Msa0478680-mRNA-1 |
| chr3_3 | exon | 83554795 | 83554909 | 83554795 | ID=Msa0478680-mRNA-1:exon:23499;Parent=Msa0478680-mRNA-1 |
| chr3_3 | exon | 83555067 | 83555640 | 83555067 | ID=Msa0478680-mRNA-1:exon:23498;Parent=Msa0478680-mRNA-1 |
| chr3_3 | exon | 83555995 | 83556137 | 83555995 | ID=Msa0478680-mRNA-1:exon:23497;Parent=Msa0478680-mRNA-1 |
| chr3_3 | exon | 83556222 | 83556275 | 83556222 | ID=Msa0478680-mRNA-1:exon:23496;Parent=Msa0478680-mRNA-1 |
| chr3_3 | exon | 83556626 | 83556854 | 83556626 | ID=Msa0478680-mRNA-1:exon:23495;Parent=Msa0478680-mRNA-1 |
| chr3_3 | exon | 83556952 | 83557051 | 83556952 | ID=Msa0478680-mRNA-1:exon:23494;Parent=Msa0478680-mRNA-1 |
| chr3_3 | exon | 83557138 | 83557192 | 83557138 | ID=Msa0478680-mRNA-1:exon:23493;Parent=Msa0478680-mRNA-1 |
| chr3_3 | exon | 83557274 | 83557860 | 83557274 | ID=Msa0478680-mRNA-1:exon:23492;Parent=Msa0478680-mRNA-1 |
| chr3_3 | five_prime_UTR | 83557781 | 83557860 | 83557781 | ID=Msa0478680-mRNA-1:five_prime_utr;Parent=Msa0478680-mRNA-1 |
| chr3_3 | CDS | 83557274 | 83557780 | 83557274 | ID=Msa0478680-mRNA-1:cds;Parent=Msa0478680-mRNA-1 |
| chr3_3 | CDS | 83557138 | 83557192 | 83557138 | ID=Msa0478680-mRNA-1:cds;Parent=Msa0478680-mRNA-1 |
| chr3_3 | CDS | 83556952 | 83557051 | 83556952 | ID=Msa0478680-mRNA-1:cds;Parent=Msa0478680-mRNA-1 |
| chr3_3 | CDS | 83556626 | 83556854 | 83556626 | ID=Msa0478680-mRNA-1:cds;Parent=Msa0478680-mRNA-1 |
| chr3_3 | CDS | 83556222 | 83556275 | 83556222 | ID=Msa0478680-mRNA-1:cds;Parent=Msa0478680-mRNA-1 |
| chr3_3 | CDS | 83555995 | 83556137 | 83555995 | ID=Msa0478680-mRNA-1:cds;Parent=Msa0478680-mRNA-1 |
| chr3_3 | CDS | 83555067 | 83555640 | 83555067 | ID=Msa0478680-mRNA-1:cds;Parent=Msa0478680-mRNA-1 |
| chr3_3 | CDS | 83554795 | 83554909 | 83554795 | ID=Msa0478680-mRNA-1:cds;Parent=Msa0478680-mRNA-1 |
| chr3_3 | CDS | 83554629 | 83554678 | 83554629 | ID=Msa0478680-mRNA-1:cds;Parent=Msa0478680-mRNA-1 |
| chr3_3 | CDS | 83554265 | 83554411 | 83554265 | ID=Msa0478680-mRNA-1:cds;Parent=Msa0478680-mRNA-1 |
| chr3_3 | CDS | 83553687 | 83553929 | 83553687 | ID=Msa0478680-mRNA-1:cds;Parent=Msa0478680-mRNA-1 |
| chr3_3 | three_prime_UTR | 83553496 | 83553686 | 83553496 | ID=Msa0478680-mRNA-1:three_prime_utr;Parent=Msa0478680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
