AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1116660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1116660 MtrunA17_Chr7g0259151 98.592 142 2 0 1 142 1 142 4.20e-99 280
Msa1116660 MtrunA17_Chr7g0268831 84.507 142 22 0 1 142 1 142 2.16e-84 243
Msa1116660 MtrunA17_Chr7g0273351 87.313 134 17 0 9 142 6 139 8.32e-82 236
Msa1116660 MtrunA17_Chr7g0273331 87.313 134 17 0 9 142 62 195 1.69e-80 235
Msa1116660 MtrunA17_Chr2g0319191 79.508 122 21 1 13 130 3 124 9.39e-66 196
Msa1116660 MtrunA17_Chr7g0273341 77.037 135 20 2 8 142 44 167 1.07e-65 197
Msa1116660 MtrunA17_Chr2g0319181 80.992 121 15 2 13 127 3 121 8.89e-65 193
Msa1116660 MtrunA17_Chr7g0272611 75.424 118 29 0 12 129 16 133 1.39e-58 178
Msa1116660 MtrunA17_Chr2g0327951 78.505 107 23 0 21 127 58 164 1.10e-56 175
Msa1116660 MtrunA17_Chr4g0035621 79.245 106 22 0 22 127 24 129 1.67e-56 173
Msa1116660 MtrunA17_Chr4g0031041 78.505 107 23 0 21 127 17 123 2.44e-56 172
Msa1116660 MtrunA17_Chr4g0031651 78.302 106 23 0 22 127 24 129 6.95e-56 171
Msa1116660 MtrunA17_Chr4g0031001 78.302 106 23 0 22 127 24 129 7.59e-56 171
Msa1116660 MtrunA17_Chr8g0379311 78.302 106 23 0 22 127 24 129 8.73e-56 171
Msa1116660 MtrunA17_Chr2g0327931 78.302 106 23 0 22 127 23 128 8.79e-56 171
Msa1116660 MtrunA17_Chr4g0032301 78.302 106 23 0 22 127 24 129 1.26e-55 171
Msa1116660 MtrunA17_Chr6g0449661 64.486 107 29 2 22 127 85 183 5.42e-39 130
Msa1116660 MtrunA17_Chr3g0119971 64.151 106 29 2 23 127 81 178 1.96e-38 129
Msa1116660 MtrunA17_Chr1g0148961 60.748 107 40 2 21 126 25 130 4.36e-37 123
Msa1116660 MtrunA17_Chr1g0148951 60.748 107 40 2 21 126 25 130 4.36e-37 123
Msa1116660 MtrunA17_Chr1g0211651 53.906 128 56 3 1 126 1 127 1.45e-36 122
Msa1116660 MtrunA17_Chr1g0184901 54.688 128 45 4 11 126 4 130 9.54e-36 120
Msa1116660 MtrunA17_Chr4g0031031 77.027 74 17 0 43 116 10 83 5.80e-35 117
Msa1116660 MtrunA17_Chr4g0024701 49.533 107 34 2 22 128 26 112 1.60e-25 93.6
Msa1116660 MtrunA17_Chr4g0000531 81.250 48 9 0 83 130 5 52 1.72e-22 84.3
Msa1116660 MtrunA17_Chr1g0183701 57.143 63 27 0 65 127 30 92 6.08e-18 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1116660 AT1G54690.1 84.507 142 22 0 1 142 1 142 4.01e-84 243
Msa1116660 AT1G08880.1 83.099 142 24 0 1 142 1 142 3.80e-83 240
Msa1116660 AT4G27230.2 79.032 124 22 1 13 132 3 126 1.86e-65 195
Msa1116660 AT4G27230.1 79.032 124 22 1 13 132 3 126 1.86e-65 195
Msa1116660 AT5G54640.1 78.226 124 23 1 13 132 3 126 7.75e-65 194
Msa1116660 AT3G20670.1 78.226 124 23 1 13 132 3 126 4.09e-64 192
Msa1116660 AT1G51060.1 76.613 124 25 1 13 132 3 126 5.04e-64 192
Msa1116660 AT5G59870.1 71.324 136 33 3 4 134 2 136 4.19e-60 182
Msa1116660 AT5G27670.1 72.800 125 30 1 7 127 6 130 1.27e-55 171
Msa1116660 AT5G02560.1 77.570 107 24 0 21 127 23 129 6.62e-55 169
Msa1116660 AT5G02560.2 63.359 131 24 1 21 127 23 153 5.49e-49 155
Msa1116660 AT2G38810.1 61.111 108 38 3 21 126 27 132 2.49e-36 122
Msa1116660 AT2G38810.4 61.111 108 38 3 21 126 27 132 2.49e-36 122
Msa1116660 AT2G38810.3 61.111 108 38 3 21 126 27 132 2.49e-36 122
Msa1116660 AT2G38810.2 61.111 108 38 3 21 126 27 132 2.49e-36 122
Msa1116660 AT1G52740.1 59.048 105 41 2 23 126 27 130 9.39e-36 120
Msa1116660 AT3G54560.1 59.434 106 39 3 23 126 29 132 7.32e-35 118
Msa1116660 AT3G54560.2 59.434 106 39 3 23 126 29 132 7.32e-35 118
Msa1116660 AT4G13570.1 49.462 93 43 3 30 120 28 118 1.43e-20 81.3
Msa1116660 AT4G13570.2 48.913 92 43 3 31 120 35 124 7.08e-20 79.7

Find 67 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAACGGACTTGGTGGTTT+TGG 0.182132 7_3:+64428902 None:intergenic
TTCTTTCCAGCCACCTTCTT+TGG 0.190245 7_3:+64428491 None:intergenic
TTTGCCCCTTCCACCTTTCT+TGG 0.205738 7_3:+64428926 None:intergenic
CGATGGGGCCAACGGGGAAC+TGG 0.327716 7_3:+64428859 None:intergenic
GCTGGAAAGAAGGGAGAAAT+TGG 0.339055 7_3:-64428479 Msa1116660:CDS
CCTTCTTTGGCAACAAAGTC+TGG 0.341613 7_3:+64428504 None:intergenic
TGTTGGATCGTTAAAATGTT+AGG 0.342558 7_3:-64428414 Msa1116660:three_prime_UTR
AAGCGAGCGATGGGGCCAAC+GGG 0.353402 7_3:+64428852 None:intergenic
TAGGGGTTTAATGTAGCATT+TGG 0.358115 7_3:-64428437 Msa1116660:three_prime_UTR
ACATCAAAGTACACTCTCTT+TGG 0.365869 7_3:+64429284 None:intergenic
AGAACGGCGGAGAGGTAAAC+AGG 0.367840 7_3:+64428786 None:intergenic
GTTTCGTTCTTGATTCTGAT+TGG 0.382483 7_3:+64429065 None:intergenic
AACAAAGTCTGGTGAATGTT+AGG 0.388717 7_3:+64428515 None:intergenic
TATTCTCAACGTGTTGGATC+TGG 0.390278 7_3:-64428813 Msa1116660:CDS
GCTTGATCTGGAAACGGACT+TGG 0.398049 7_3:+64428893 None:intergenic
TGAAGAATTGAGCAAATTGT+TGG 0.398697 7_3:-64428570 Msa1116660:CDS
GTTGGCTTTGGTTTATATAG+AGG 0.398990 7_3:+64429043 None:intergenic
GAGAATAACGACCTGCTTTG+AGG 0.406903 7_3:+64428829 None:intergenic
CCAGACTTTGTTGCCAAAGA+AGG 0.415982 7_3:-64428504 Msa1116660:CDS
GGCTTTGCTTGATCTGGAAA+CGG 0.440381 7_3:+64428887 None:intergenic
GAGACCGGCTTTGCTTGATC+TGG 0.448607 7_3:+64428881 None:intergenic
AAGTTTAATTGAGTTGGCTT+TGG 0.455144 7_3:+64429031 None:intergenic
CGTTCCTCACAGCTAGTTGA+AGG 0.456555 7_3:+64428594 None:intergenic
GAAGCGAGCGATGGGGCCAA+CGG 0.459170 7_3:+64428851 None:intergenic
TTTAATGTAGCATTTGGTGT+TGG 0.463658 7_3:-64428431 Msa1116660:three_prime_UTR
AAAGAAGGTGGCTGGAAAGA+AGG 0.474142 7_3:-64428489 Msa1116660:CDS
TGCTTTGAGGAAGCGAGCGA+TGG 0.478941 7_3:+64428842 None:intergenic
GATTAGGTTAGGATTAATGT+TGG 0.482420 7_3:-64428337 Msa1116660:three_prime_UTR
GCTTTGAGGAAGCGAGCGAT+GGG 0.486043 7_3:+64428843 None:intergenic
TTGTTGCCAAAGAAGGTGGC+TGG 0.488184 7_3:-64428497 Msa1116660:CDS
AGAAATTGGATCTGTTAGTC+AGG 0.492158 7_3:-64428465 Msa1116660:CDS
GCCAACGGGGAACTGGAGAC+CGG 0.500325 7_3:+64428866 None:intergenic
ATCGCTCGCTTCCTCAAAGC+AGG 0.500822 7_3:-64428840 Msa1116660:CDS
GAAGAATTGAGCAAATTGTT+GGG 0.504162 7_3:-64428569 Msa1116660:CDS
GTTGTGAAGTTTAATTGAGT+TGG 0.512047 7_3:+64429025 None:intergenic
TGATTCTGATTGGCTTAGAG+AGG 0.517754 7_3:+64429075 None:intergenic
TGATCTGGAAACGGACTTGG+TGG 0.521894 7_3:+64428896 None:intergenic
CACGCCAGCGAAACTTGAAA+AGG 0.523341 7_3:-64429173 Msa1116660:five_prime_UTR
CAACAACCAAGAAAGGTGGA+AGG 0.537155 7_3:-64428932 Msa1116660:CDS
ACAGCTAGTTGAAGGTGCCT+TGG 0.544219 7_3:+64428602 None:intergenic
AACAACCAAGAAAGGTGGAA+GGG 0.559634 7_3:-64428931 Msa1116660:CDS
GCAACAGCAACAACCAAGAA+AGG 0.559755 7_3:-64428939 Msa1116660:CDS
GGTCGTTATTCTCAACGTGT+TGG 0.559902 7_3:-64428819 Msa1116660:CDS
GGACATGTGACTATTGCTAA+TGG 0.560318 7_3:-64428548 Msa1116660:CDS
ACAACCAAGAAAGGTGGAAG+GGG 0.560784 7_3:-64428930 Msa1116660:CDS
GCCGGTCTCCAGTTCCCCGT+TGG 0.565477 7_3:-64428867 Msa1116660:CDS
GACTTTGTTGCCAAAGAAGG+TGG 0.566455 7_3:-64428501 Msa1116660:CDS
AAGAAGGTGGCTGGAAAGAA+GGG 0.567889 7_3:-64428488 Msa1116660:CDS
GTTTCCAGATCAAGCAAAGC+CGG 0.580006 7_3:-64428885 Msa1116660:CDS
GGCGCAGAGGTATTCAAGAA+CGG 0.601101 7_3:+64428770 None:intergenic
CAAGGGATAACAAGAAGACA+AGG 0.618509 7_3:-64428631 Msa1116660:CDS
AGCGAGCGATGGGGCCAACG+GGG 0.629125 7_3:+64428853 None:intergenic
AATTGGCTGGTAATGCTGCA+AGG 0.630027 7_3:-64428649 Msa1116660:CDS
TGTTTATACTAGCAATAGAG+AGG 0.630482 7_3:-64429264 Msa1116660:five_prime_UTR
ATTGGCTGGTAATGCTGCAA+GGG 0.637236 7_3:-64428648 Msa1116660:CDS
ACAGCAACAACCAAGAAAGG+TGG 0.649404 7_3:-64428936 Msa1116660:CDS
TCTTGAATACCTCTGCGCCG+AGG 0.661590 7_3:-64428766 Msa1116660:intron
CATGTGACTATTGCTAATGG+TGG 0.673088 7_3:-64428545 Msa1116660:CDS
CTTTGAGGAAGCGAGCGATG+GGG 0.676529 7_3:+64428844 None:intergenic
GAACGGCGGAGAGGTAAACA+GGG 0.687773 7_3:+64428787 None:intergenic
GGTATTCAAGAACGGCGGAG+AGG 0.689904 7_3:+64428778 None:intergenic
GGCACCTTCAACTAGCTGTG+AGG 0.707498 7_3:-64428598 Msa1116660:CDS
AGAAGACAAGGATTGTACCA+AGG 0.714311 7_3:-64428619 Msa1116660:CDS
TGGCTTAGAGAGGTTTCACG+CGG 0.717037 7_3:+64429085 None:intergenic
TTTCACGCGGATCGCCAACG+TGG 0.727732 7_3:+64429098 None:intergenic
GCAGAGGTATTCAAGAACGG+CGG 0.737402 7_3:+64428773 None:intergenic
AACGGCGGAGAGGTAAACAG+GGG 0.752615 7_3:+64428788 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAACCGTTTATATTAATTTT+TGG - chr7_3:64429048-64429067 Msa1116660:five_prime_UTR 15.0%
!!! AACCGTTTATATTAATTTTT+GGG - chr7_3:64429049-64429068 Msa1116660:five_prime_UTR 15.0%
!!! TAACCGTTTATATTAATTTT+TGG - chr7_3:64429048-64429067 Msa1116660:five_prime_UTR 15.0%
!!! AACCGTTTATATTAATTTTT+GGG - chr7_3:64429049-64429068 Msa1116660:five_prime_UTR 15.0%
!! TTCAAAACAGAAAAAAACAA+TGG - chr7_3:64428765-64428784 Msa1116660:intron 20.0%
!! CACCCAAAAATTAATATAAA+CGG + chr7_3:64429054-64429073 None:intergenic 20.0%
!! TTCAAAACAGAAAAAAACAA+TGG - chr7_3:64428765-64428784 Msa1116660:intron 20.0%
!! CACCCAAAAATTAATATAAA+CGG + chr7_3:64429054-64429073 None:intergenic 20.0%
! AAAGCAAAGAAAAATTACCT+CGG + chr7_3:64428989-64429008 None:intergenic 25.0%
!!! CGTTTATATTAATTTTTGGG+TGG - chr7_3:64429052-64429071 Msa1116660:five_prime_UTR 25.0%
!!! ATATTAATTTTTGGGTGGTT+AGG - chr7_3:64429057-64429076 Msa1116660:five_prime_UTR 25.0%
!!! TCTTATTTTGAGATTAGGTT+AGG - chr7_3:64429387-64429406 Msa1116660:five_prime_UTR 25.0%
! AAAGCAAAGAAAAATTACCT+CGG + chr7_3:64428989-64429008 None:intergenic 25.0%
!!! CGTTTATATTAATTTTTGGG+TGG - chr7_3:64429052-64429071 Msa1116660:five_prime_UTR 25.0%
!!! ATATTAATTTTTGGGTGGTT+AGG - chr7_3:64429057-64429076 Msa1116660:five_prime_UTR 25.0%
!!! TCTTATTTTGAGATTAGGTT+AGG - chr7_3:64429387-64429406 Msa1116660:five_prime_UTR 25.0%
TGTTTATACTAGCAATAGAG+AGG - chr7_3:64428471-64428490 Msa1116660:CDS 30.0%
!!! AAACAAGTTTGAGTTTTGAG+CGG + chr7_3:64428610-64428629 None:intergenic 30.0%
!!! CAAAACTCAAACTTGTTTTG+CGG - chr7_3:64428612-64428631 Msa1116660:CDS 30.0%
!! AAGTTTAATTGAGTTGGCTT+TGG + chr7_3:64428707-64428726 None:intergenic 30.0%
GTTGTGAAGTTTAATTGAGT+TGG + chr7_3:64428713-64428732 None:intergenic 30.0%
TGAAGAATTGAGCAAATTGT+TGG - chr7_3:64429165-64429184 Msa1116660:five_prime_UTR 30.0%
GAAGAATTGAGCAAATTGTT+GGG - chr7_3:64429166-64429185 Msa1116660:five_prime_UTR 30.0%
!! TTTAATGTAGCATTTGGTGT+TGG - chr7_3:64429304-64429323 Msa1116660:five_prime_UTR 30.0%
TGTTGGATCGTTAAAATGTT+AGG - chr7_3:64429321-64429340 Msa1116660:five_prime_UTR 30.0%
!!! CGTGTTCTTATTTTGAGATT+AGG - chr7_3:64429382-64429401 Msa1116660:five_prime_UTR 30.0%
GATTAGGTTAGGATTAATGT+TGG - chr7_3:64429398-64429417 Msa1116660:five_prime_UTR 30.0%
TGTTTATACTAGCAATAGAG+AGG - chr7_3:64428471-64428490 Msa1116660:CDS 30.0%
!!! AAACAAGTTTGAGTTTTGAG+CGG + chr7_3:64428610-64428629 None:intergenic 30.0%
!!! CAAAACTCAAACTTGTTTTG+CGG - chr7_3:64428612-64428631 Msa1116660:CDS 30.0%
!! AAGTTTAATTGAGTTGGCTT+TGG + chr7_3:64428707-64428726 None:intergenic 30.0%
GTTGTGAAGTTTAATTGAGT+TGG + chr7_3:64428713-64428732 None:intergenic 30.0%
TGAAGAATTGAGCAAATTGT+TGG - chr7_3:64429165-64429184 Msa1116660:five_prime_UTR 30.0%
GAAGAATTGAGCAAATTGTT+GGG - chr7_3:64429166-64429185 Msa1116660:five_prime_UTR 30.0%
!! TTTAATGTAGCATTTGGTGT+TGG - chr7_3:64429304-64429323 Msa1116660:five_prime_UTR 30.0%
TGTTGGATCGTTAAAATGTT+AGG - chr7_3:64429321-64429340 Msa1116660:five_prime_UTR 30.0%
!!! CGTGTTCTTATTTTGAGATT+AGG - chr7_3:64429382-64429401 Msa1116660:five_prime_UTR 30.0%
GATTAGGTTAGGATTAATGT+TGG - chr7_3:64429398-64429417 Msa1116660:five_prime_UTR 30.0%
ACATCAAAGTACACTCTCTT+TGG + chr7_3:64428454-64428473 None:intergenic 35.0%
!! TTTTGATTGCCGCTCAAAAT+CGG - chr7_3:64428505-64428524 Msa1116660:CDS 35.0%
!!! AACAAGTTTGAGTTTTGAGC+GGG + chr7_3:64428609-64428628 None:intergenic 35.0%
GTTTCGTTCTTGATTCTGAT+TGG + chr7_3:64428673-64428692 None:intergenic 35.0%
!! GTTGGCTTTGGTTTATATAG+AGG + chr7_3:64428695-64428714 None:intergenic 35.0%
CAAACTCAAAATAACACTCG+AGG + chr7_3:64429015-64429034 None:intergenic 35.0%
!!! ATTTTTGGGTGGTTAGGTTT+TGG - chr7_3:64429063-64429082 Msa1116660:five_prime_UTR 35.0%
AACAAAGTCTGGTGAATGTT+AGG + chr7_3:64429223-64429242 None:intergenic 35.0%
AGAAATTGGATCTGTTAGTC+AGG - chr7_3:64429270-64429289 Msa1116660:five_prime_UTR 35.0%
! ATCTGTTAGTCAGGAGTTTT+AGG - chr7_3:64429279-64429298 Msa1116660:five_prime_UTR 35.0%
! TCTGTTAGTCAGGAGTTTTA+GGG - chr7_3:64429280-64429299 Msa1116660:five_prime_UTR 35.0%
TAGGGGTTTAATGTAGCATT+TGG - chr7_3:64429298-64429317 Msa1116660:five_prime_UTR 35.0%
ACATCAAAGTACACTCTCTT+TGG + chr7_3:64428454-64428473 None:intergenic 35.0%
!! TTTTGATTGCCGCTCAAAAT+CGG - chr7_3:64428505-64428524 Msa1116660:CDS 35.0%
!!! AACAAGTTTGAGTTTTGAGC+GGG + chr7_3:64428609-64428628 None:intergenic 35.0%
GTTTCGTTCTTGATTCTGAT+TGG + chr7_3:64428673-64428692 None:intergenic 35.0%
!! GTTGGCTTTGGTTTATATAG+AGG + chr7_3:64428695-64428714 None:intergenic 35.0%
CAAACTCAAAATAACACTCG+AGG + chr7_3:64429015-64429034 None:intergenic 35.0%
!!! ATTTTTGGGTGGTTAGGTTT+TGG - chr7_3:64429063-64429082 Msa1116660:five_prime_UTR 35.0%
AACAAAGTCTGGTGAATGTT+AGG + chr7_3:64429223-64429242 None:intergenic 35.0%
AGAAATTGGATCTGTTAGTC+AGG - chr7_3:64429270-64429289 Msa1116660:five_prime_UTR 35.0%
! ATCTGTTAGTCAGGAGTTTT+AGG - chr7_3:64429279-64429298 Msa1116660:five_prime_UTR 35.0%
! TCTGTTAGTCAGGAGTTTTA+GGG - chr7_3:64429280-64429299 Msa1116660:five_prime_UTR 35.0%
TAGGGGTTTAATGTAGCATT+TGG - chr7_3:64429298-64429317 Msa1116660:five_prime_UTR 35.0%
! TTCGTGAATCCGATTTTGAG+CGG + chr7_3:64428517-64428536 None:intergenic 40.0%
!! TGATTCTGATTGGCTTAGAG+AGG + chr7_3:64428663-64428682 None:intergenic 40.0%
AACAACCAAGAAAGGTGGAA+GGG - chr7_3:64428804-64428823 Msa1116660:CDS 40.0%
TATTCTCAACGTGTTGGATC+TGG - chr7_3:64428922-64428941 Msa1116660:CDS 40.0%
CAAGGGATAACAAGAAGACA+AGG - chr7_3:64429104-64429123 Msa1116660:five_prime_UTR 40.0%
AGAAGACAAGGATTGTACCA+AGG - chr7_3:64429116-64429135 Msa1116660:five_prime_UTR 40.0%
GGACATGTGACTATTGCTAA+TGG - chr7_3:64429187-64429206 Msa1116660:five_prime_UTR 40.0%
CATGTGACTATTGCTAATGG+TGG - chr7_3:64429190-64429209 Msa1116660:five_prime_UTR 40.0%
!! CTGTTAGTCAGGAGTTTTAG+GGG - chr7_3:64429281-64429300 Msa1116660:five_prime_UTR 40.0%
! TTCGTGAATCCGATTTTGAG+CGG + chr7_3:64428517-64428536 None:intergenic 40.0%
!! TGATTCTGATTGGCTTAGAG+AGG + chr7_3:64428663-64428682 None:intergenic 40.0%
AACAACCAAGAAAGGTGGAA+GGG - chr7_3:64428804-64428823 Msa1116660:CDS 40.0%
TATTCTCAACGTGTTGGATC+TGG - chr7_3:64428922-64428941 Msa1116660:CDS 40.0%
CAAGGGATAACAAGAAGACA+AGG - chr7_3:64429104-64429123 Msa1116660:five_prime_UTR 40.0%
AGAAGACAAGGATTGTACCA+AGG - chr7_3:64429116-64429135 Msa1116660:five_prime_UTR 40.0%
GGACATGTGACTATTGCTAA+TGG - chr7_3:64429187-64429206 Msa1116660:five_prime_UTR 40.0%
CATGTGACTATTGCTAATGG+TGG - chr7_3:64429190-64429209 Msa1116660:five_prime_UTR 40.0%
!! CTGTTAGTCAGGAGTTTTAG+GGG - chr7_3:64429281-64429300 Msa1116660:five_prime_UTR 40.0%
GCAACAGCAACAACCAAGAA+AGG - chr7_3:64428796-64428815 Msa1116660:CDS 45.0%
ACAGCAACAACCAAGAAAGG+TGG - chr7_3:64428799-64428818 Msa1116660:CDS 45.0%
CAACAACCAAGAAAGGTGGA+AGG - chr7_3:64428803-64428822 Msa1116660:CDS 45.0%
ACAACCAAGAAAGGTGGAAG+GGG - chr7_3:64428805-64428824 Msa1116660:CDS 45.0%
!!! GAAACGGACTTGGTGGTTTT+GGG + chr7_3:64428835-64428854 None:intergenic 45.0%
GGCTTTGCTTGATCTGGAAA+CGG + chr7_3:64428851-64428870 None:intergenic 45.0%
GTTTCCAGATCAAGCAAAGC+CGG - chr7_3:64428850-64428869 Msa1116660:CDS 45.0%
GAGAATAACGACCTGCTTTG+AGG + chr7_3:64428909-64428928 None:intergenic 45.0%
GGTCGTTATTCTCAACGTGT+TGG - chr7_3:64428916-64428935 Msa1116660:CDS 45.0%
!!! GGGTGGTTAGGTTTTGGAAT+TGG - chr7_3:64429069-64429088 Msa1116660:five_prime_UTR 45.0%
!!! GGTTAGGTTTTGGAATTGGC+TGG - chr7_3:64429073-64429092 Msa1116660:five_prime_UTR 45.0%
! AATTGGCTGGTAATGCTGCA+AGG - chr7_3:64429086-64429105 Msa1116660:five_prime_UTR 45.0%
! ATTGGCTGGTAATGCTGCAA+GGG - chr7_3:64429087-64429106 Msa1116660:five_prime_UTR 45.0%
CCTTCTTTGGCAACAAAGTC+TGG + chr7_3:64429234-64429253 None:intergenic 45.0%
CCAGACTTTGTTGCCAAAGA+AGG - chr7_3:64429231-64429250 Msa1116660:five_prime_UTR 45.0%
GACTTTGTTGCCAAAGAAGG+TGG - chr7_3:64429234-64429253 Msa1116660:five_prime_UTR 45.0%
TTCTTTCCAGCCACCTTCTT+TGG + chr7_3:64429247-64429266 None:intergenic 45.0%
AAAGAAGGTGGCTGGAAAGA+AGG - chr7_3:64429246-64429265 Msa1116660:five_prime_UTR 45.0%
AAGAAGGTGGCTGGAAAGAA+GGG - chr7_3:64429247-64429266 Msa1116660:five_prime_UTR 45.0%
GCTGGAAAGAAGGGAGAAAT+TGG - chr7_3:64429256-64429275 Msa1116660:five_prime_UTR 45.0%
GCAACAGCAACAACCAAGAA+AGG - chr7_3:64428796-64428815 Msa1116660:CDS 45.0%
ACAGCAACAACCAAGAAAGG+TGG - chr7_3:64428799-64428818 Msa1116660:CDS 45.0%
CAACAACCAAGAAAGGTGGA+AGG - chr7_3:64428803-64428822 Msa1116660:CDS 45.0%
ACAACCAAGAAAGGTGGAAG+GGG - chr7_3:64428805-64428824 Msa1116660:CDS 45.0%
!!! GAAACGGACTTGGTGGTTTT+GGG + chr7_3:64428835-64428854 None:intergenic 45.0%
GGCTTTGCTTGATCTGGAAA+CGG + chr7_3:64428851-64428870 None:intergenic 45.0%
GTTTCCAGATCAAGCAAAGC+CGG - chr7_3:64428850-64428869 Msa1116660:CDS 45.0%
GAGAATAACGACCTGCTTTG+AGG + chr7_3:64428909-64428928 None:intergenic 45.0%
GGTCGTTATTCTCAACGTGT+TGG - chr7_3:64428916-64428935 Msa1116660:CDS 45.0%
!!! GGGTGGTTAGGTTTTGGAAT+TGG - chr7_3:64429069-64429088 Msa1116660:five_prime_UTR 45.0%
!!! GGTTAGGTTTTGGAATTGGC+TGG - chr7_3:64429073-64429092 Msa1116660:five_prime_UTR 45.0%
! AATTGGCTGGTAATGCTGCA+AGG - chr7_3:64429086-64429105 Msa1116660:five_prime_UTR 45.0%
! ATTGGCTGGTAATGCTGCAA+GGG - chr7_3:64429087-64429106 Msa1116660:five_prime_UTR 45.0%
CCTTCTTTGGCAACAAAGTC+TGG + chr7_3:64429234-64429253 None:intergenic 45.0%
CCAGACTTTGTTGCCAAAGA+AGG - chr7_3:64429231-64429250 Msa1116660:five_prime_UTR 45.0%
GACTTTGTTGCCAAAGAAGG+TGG - chr7_3:64429234-64429253 Msa1116660:five_prime_UTR 45.0%
TTCTTTCCAGCCACCTTCTT+TGG + chr7_3:64429247-64429266 None:intergenic 45.0%
AAAGAAGGTGGCTGGAAAGA+AGG - chr7_3:64429246-64429265 Msa1116660:five_prime_UTR 45.0%
AAGAAGGTGGCTGGAAAGAA+GGG - chr7_3:64429247-64429266 Msa1116660:five_prime_UTR 45.0%
GCTGGAAAGAAGGGAGAAAT+TGG - chr7_3:64429256-64429275 Msa1116660:five_prime_UTR 45.0%
!!! CTTTTCAAGTTTCGCTGGCG+TGG + chr7_3:64428564-64428583 None:intergenic 50.0%
CACGCCAGCGAAACTTGAAA+AGG - chr7_3:64428562-64428581 Msa1116660:CDS 50.0%
!!! CACGCCTTTTCAAGTTTCGC+TGG + chr7_3:64428569-64428588 None:intergenic 50.0%
TGGCTTAGAGAGGTTTCACG+CGG + chr7_3:64428653-64428672 None:intergenic 50.0%
TTTGCCCCTTCCACCTTTCT+TGG + chr7_3:64428812-64428831 None:intergenic 50.0%
!!! GGAAACGGACTTGGTGGTTT+TGG + chr7_3:64428836-64428855 None:intergenic 50.0%
! TGATCTGGAAACGGACTTGG+TGG + chr7_3:64428842-64428861 None:intergenic 50.0%
! GCTTGATCTGGAAACGGACT+TGG + chr7_3:64428845-64428864 None:intergenic 50.0%
!! GCAGAGGTATTCAAGAACGG+CGG + chr7_3:64428965-64428984 None:intergenic 50.0%
!! GGCGCAGAGGTATTCAAGAA+CGG + chr7_3:64428968-64428987 None:intergenic 50.0%
GAAAAATTACCTCGGCGCAG+AGG + chr7_3:64428981-64429000 None:intergenic 50.0%
!! ACAGCTAGTTGAAGGTGCCT+TGG + chr7_3:64429136-64429155 None:intergenic 50.0%
CGTTCCTCACAGCTAGTTGA+AGG + chr7_3:64429144-64429163 None:intergenic 50.0%
TTGTTGCCAAAGAAGGTGGC+TGG - chr7_3:64429238-64429257 Msa1116660:five_prime_UTR 50.0%
!!! CTTTTCAAGTTTCGCTGGCG+TGG + chr7_3:64428564-64428583 None:intergenic 50.0%
CACGCCAGCGAAACTTGAAA+AGG - chr7_3:64428562-64428581 Msa1116660:CDS 50.0%
!!! CACGCCTTTTCAAGTTTCGC+TGG + chr7_3:64428569-64428588 None:intergenic 50.0%
TGGCTTAGAGAGGTTTCACG+CGG + chr7_3:64428653-64428672 None:intergenic 50.0%
TTTGCCCCTTCCACCTTTCT+TGG + chr7_3:64428812-64428831 None:intergenic 50.0%
!!! GGAAACGGACTTGGTGGTTT+TGG + chr7_3:64428836-64428855 None:intergenic 50.0%
! TGATCTGGAAACGGACTTGG+TGG + chr7_3:64428842-64428861 None:intergenic 50.0%
! GCTTGATCTGGAAACGGACT+TGG + chr7_3:64428845-64428864 None:intergenic 50.0%
!! GCAGAGGTATTCAAGAACGG+CGG + chr7_3:64428965-64428984 None:intergenic 50.0%
!! GGCGCAGAGGTATTCAAGAA+CGG + chr7_3:64428968-64428987 None:intergenic 50.0%
GAAAAATTACCTCGGCGCAG+AGG + chr7_3:64428981-64429000 None:intergenic 50.0%
!! ACAGCTAGTTGAAGGTGCCT+TGG + chr7_3:64429136-64429155 None:intergenic 50.0%
CGTTCCTCACAGCTAGTTGA+AGG + chr7_3:64429144-64429163 None:intergenic 50.0%
TTGTTGCCAAAGAAGGTGGC+TGG - chr7_3:64429238-64429257 Msa1116660:five_prime_UTR 50.0%
!!! CTTGTTTTGCGGTGCCACGT+TGG - chr7_3:64428623-64428642 Msa1116660:CDS 55.0%
! GAGACCGGCTTTGCTTGATC+TGG + chr7_3:64428857-64428876 None:intergenic 55.0%
! CTTTGAGGAAGCGAGCGATG+GGG + chr7_3:64428894-64428913 None:intergenic 55.0%
!! GCTTTGAGGAAGCGAGCGAT+GGG + chr7_3:64428895-64428914 None:intergenic 55.0%
!! TGCTTTGAGGAAGCGAGCGA+TGG + chr7_3:64428896-64428915 None:intergenic 55.0%
ATCGCTCGCTTCCTCAAAGC+AGG - chr7_3:64428895-64428914 Msa1116660:CDS 55.0%
AACGGCGGAGAGGTAAACAG+GGG + chr7_3:64428950-64428969 None:intergenic 55.0%
GAACGGCGGAGAGGTAAACA+GGG + chr7_3:64428951-64428970 None:intergenic 55.0%
AGAACGGCGGAGAGGTAAAC+AGG + chr7_3:64428952-64428971 None:intergenic 55.0%
GGTATTCAAGAACGGCGGAG+AGG + chr7_3:64428960-64428979 None:intergenic 55.0%
TCTTGAATACCTCTGCGCCG+AGG - chr7_3:64428969-64428988 Msa1116660:exon 55.0%
GGCACCTTCAACTAGCTGTG+AGG - chr7_3:64429137-64429156 Msa1116660:five_prime_UTR 55.0%
!!! CTTGTTTTGCGGTGCCACGT+TGG - chr7_3:64428623-64428642 Msa1116660:CDS 55.0%
! GAGACCGGCTTTGCTTGATC+TGG + chr7_3:64428857-64428876 None:intergenic 55.0%
! CTTTGAGGAAGCGAGCGATG+GGG + chr7_3:64428894-64428913 None:intergenic 55.0%
!! GCTTTGAGGAAGCGAGCGAT+GGG + chr7_3:64428895-64428914 None:intergenic 55.0%
!! TGCTTTGAGGAAGCGAGCGA+TGG + chr7_3:64428896-64428915 None:intergenic 55.0%
ATCGCTCGCTTCCTCAAAGC+AGG - chr7_3:64428895-64428914 Msa1116660:CDS 55.0%
AACGGCGGAGAGGTAAACAG+GGG + chr7_3:64428950-64428969 None:intergenic 55.0%
GAACGGCGGAGAGGTAAACA+GGG + chr7_3:64428951-64428970 None:intergenic 55.0%
AGAACGGCGGAGAGGTAAAC+AGG + chr7_3:64428952-64428971 None:intergenic 55.0%
GGTATTCAAGAACGGCGGAG+AGG + chr7_3:64428960-64428979 None:intergenic 55.0%
TCTTGAATACCTCTGCGCCG+AGG - chr7_3:64428969-64428988 Msa1116660:exon 55.0%
GGCACCTTCAACTAGCTGTG+AGG - chr7_3:64429137-64429156 Msa1116660:five_prime_UTR 55.0%
TTTCACGCGGATCGCCAACG+TGG + chr7_3:64428640-64428659 None:intergenic 60.0%
TTTCACGCGGATCGCCAACG+TGG + chr7_3:64428640-64428659 None:intergenic 60.0%
GCCAACGGGGAACTGGAGAC+CGG + chr7_3:64428872-64428891 None:intergenic 65.0%
AAGCGAGCGATGGGGCCAAC+GGG + chr7_3:64428886-64428905 None:intergenic 65.0%
GAAGCGAGCGATGGGGCCAA+CGG + chr7_3:64428887-64428906 None:intergenic 65.0%
GCCAACGGGGAACTGGAGAC+CGG + chr7_3:64428872-64428891 None:intergenic 65.0%
AAGCGAGCGATGGGGCCAAC+GGG + chr7_3:64428886-64428905 None:intergenic 65.0%
GAAGCGAGCGATGGGGCCAA+CGG + chr7_3:64428887-64428906 None:intergenic 65.0%
GCCGGTCTCCAGTTCCCCGT+TGG - chr7_3:64428868-64428887 Msa1116660:CDS 70.0%
CGATGGGGCCAACGGGGAAC+TGG + chr7_3:64428879-64428898 None:intergenic 70.0%
AGCGAGCGATGGGGCCAACG+GGG + chr7_3:64428885-64428904 None:intergenic 70.0%
GCCGGTCTCCAGTTCCCCGT+TGG - chr7_3:64428868-64428887 Msa1116660:CDS 70.0%
CGATGGGGCCAACGGGGAAC+TGG + chr7_3:64428879-64428898 None:intergenic 70.0%
AGCGAGCGATGGGGCCAACG+GGG + chr7_3:64428885-64428904 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 64428275 64429482 64428275 ID=Msa1116660;Name=Msa1116660
chr7_3 mRNA 64428275 64429482 64428275 ID=Msa1116660-mRNA-1;Parent=Msa1116660;Name=Msa1116660-mRNA-1;_AED=0.03;_eAED=0.03;_QI=509|1|1|1|1|1|2|182|142
chr7_3 exon 64428275 64428678 64428275 ID=Msa1116660-mRNA-1:exon:15260;Parent=Msa1116660-mRNA-1
chr7_3 exon 64428767 64429482 64428767 ID=Msa1116660-mRNA-1:exon:15259;Parent=Msa1116660-mRNA-1
chr7_3 five_prime_UTR 64428974 64429482 64428974 ID=Msa1116660-mRNA-1:five_prime_utr;Parent=Msa1116660-mRNA-1
chr7_3 CDS 64428767 64428973 64428767 ID=Msa1116660-mRNA-1:cds;Parent=Msa1116660-mRNA-1
chr7_3 CDS 64428457 64428678 64428457 ID=Msa1116660-mRNA-1:cds;Parent=Msa1116660-mRNA-1
chr7_3 three_prime_UTR 64428275 64428456 64428275 ID=Msa1116660-mRNA-1:three_prime_utr;Parent=Msa1116660-mRNA-1
Gene Sequence

>Msa1116660

ATGGCTTCAGATGCAACAGCAACAACCAAGAAAGGTGGAAGGGGCAAACCCAAAACCACCAAGTCCGTTTCCAGATCAAGCAAAGCCGGTCTCCAGTTCCCCGTTGGCCCCATCGCTCGCTTCCTCAAAGCAGGTCGTTATTCTCAACGTGTTGGATCTGGTTCCCCTGTTTACCTCTCCGCCGTTCTTGAATACCTCTGCGCCGAGGTTTTGGAATTGGCTGGTAATGCTGCAAGGGATAACAAGAAGACAAGGATTGTACCAAGGCACCTTCAACTAGCTGTGAGGAACGATGAAGAATTGAGCAAATTGTTGGGACATGTGACTATTGCTAATGGTGGTGTTTTGCCTAACATTCACCAGACTTTGTTGCCAAAGAAGGTGGCTGGAAAGAAGGGAGAAATTGGATCTGTTAGTCAGGAGTTTTAG

Protein sequence

>Msa1116660

MASDATATTKKGGRGKPKTTKSVSRSSKAGLQFPVGPIARFLKAGRYSQRVGSGSPVYLSAVLEYLCAEVLELAGNAARDNKKTRIVPRHLQLAVRNDEELSKLLGHVTIANGGVLPNIHQTLLPKKVAGKKGEIGSVSQEF*