Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384970 | XP_003603733.1 | 97.158 | 387 | 10 | 1 | 1 | 387 | 1 | 386 | 0.0 | 782 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384970 | sp|Q0J0A4|LPAAT_ORYSJ | 82.514 | 366 | 63 | 1 | 23 | 387 | 49 | 414 | 0.0 | 652 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384970 | G7J4P3 | 97.158 | 387 | 10 | 1 | 1 | 387 | 1 | 386 | 0.0 | 782 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0384970 | Msa0619590 | 0.806481 | 8.057167e-50 | -8.615850e-47 |
| Msa0384970 | Msa0659800 | 0.810501 | 1.117189e-50 | -8.615850e-47 |
| Msa0384970 | Msa0856380 | 0.801792 | 7.618936e-49 | -8.615850e-47 |
| Msa0384970 | Msa1171060 | 0.888704 | 4.660758e-73 | -8.615850e-47 |
| Msa0329870 | Msa0384970 | 0.817537 | 3.131717e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384970 | MtrunA17_Chr3g0142281 | 97.158 | 387 | 10 | 1 | 1 | 387 | 1 | 386 | 0.0 | 782 |
| Msa0384970 | MtrunA17_Chr1g0155871 | 80.000 | 380 | 71 | 2 | 9 | 387 | 17 | 392 | 0.0 | 648 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384970 | AT4G24160.1 | 81.793 | 368 | 65 | 2 | 19 | 384 | 48 | 415 | 0.0 | 641 |
| Msa0384970 | AT4G24160.2 | 83.972 | 287 | 45 | 1 | 19 | 304 | 48 | 334 | 0.0 | 512 |
Find 115 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATGTACAACACTTAATTT+TGG | 0.224490 | 3_1:+88439579 | Msa0384970:CDS |
| ACTGACCTTGAGCGCGTATT+TGG | 0.229778 | 3_1:-88439450 | None:intergenic |
| CCTACGCTTGTTATGGTTCA+TGG | 0.238094 | 3_1:+88439022 | Msa0384970:CDS |
| TAGTACTACTTACTTGATAA+TGG | 0.269614 | 3_1:-88438800 | None:intergenic |
| AGGTTCCATGTGAAATTATC+AGG | 0.270422 | 3_1:+88442254 | Msa0384970:CDS |
| TTAGTAACAAACTCAGTCTT+TGG | 0.271154 | 3_1:-88439634 | None:intergenic |
| ATACTGCTTGGACATTCTTT+TGG | 0.272412 | 3_1:+88439413 | Msa0384970:CDS |
| GTGGCAGAGGTTTAGGTCCT+TGG | 0.277706 | 3_1:+88440893 | Msa0384970:intron |
| GAGCCGTTCTGAACCATCTA+TGG | 0.283949 | 3_1:+88439677 | Msa0384970:CDS |
| ATCAATAATATTGACTTGTT+GGG | 0.297983 | 3_1:+88442625 | Msa0384970:three_prime_UTR |
| TGCATTTGTGGCAGAGGTTT+AGG | 0.300561 | 3_1:+88440886 | Msa0384970:intron |
| TGGCAGAGGTTTAGGTCCTT+GGG | 0.303425 | 3_1:+88440894 | Msa0384970:intron |
| TCATATGCTTGCGAGCTTCT+TGG | 0.307279 | 3_1:-88442231 | None:intergenic |
| CTAATAATTAATTTGATCAT+AGG | 0.311713 | 3_1:+88438608 | Msa0384970:five_prime_UTR |
| TCATGGATACGCTGCTTCTC+AGG | 0.312153 | 3_1:+88439039 | Msa0384970:CDS |
| CATCGAAATCTAAAAGCTTC+TGG | 0.316718 | 3_1:+88438713 | Msa0384970:CDS |
| TCATATATGGTTACGAAGAT+TGG | 0.317405 | 3_1:+88442191 | Msa0384970:CDS |
| CATATGCTTGCGAGCTTCTT+GGG | 0.332927 | 3_1:-88442230 | None:intergenic |
| ATTAATTTGATCATAGGAAT+AGG | 0.342374 | 3_1:+88438614 | Msa0384970:five_prime_UTR |
| GTATATTTGCGGACCATGTT+AGG | 0.355647 | 3_1:-88440919 | None:intergenic |
| TAAAATTAGATTCCCATAGA+TGG | 0.360134 | 3_1:-88439690 | None:intergenic |
| AAGGTTTCTTACCCCAAATT+CGG | 0.374235 | 3_1:+88442434 | Msa0384970:CDS |
| TGATTCTCCTACGCTTGTTA+TGG | 0.377711 | 3_1:+88439015 | Msa0384970:CDS |
| TATCAATAATATTGACTTGT+TGG | 0.380434 | 3_1:+88442624 | Msa0384970:three_prime_UTR |
| GAGAAAACGTGGTTCATTAC+TGG | 0.383415 | 3_1:-88438966 | None:intergenic |
| GTGCCCACCACATTCATATA+TGG | 0.386094 | 3_1:+88442178 | Msa0384970:CDS |
| ATAACAAGCGTAGGAGAATC+AGG | 0.396588 | 3_1:-88439013 | None:intergenic |
| GTTCAAGAGCGTGTTAATAT+AGG | 0.397338 | 3_1:+88438902 | Msa0384970:CDS |
| TAAGCAGACGATAGCCCTTC+GGG | 0.404316 | 3_1:-88442471 | None:intergenic |
| ATTAAGTGTTGTACATGCTC+AGG | 0.405149 | 3_1:-88439574 | None:intergenic |
| ACACAGCTCCCCACTAGCTT+TGG | 0.405889 | 3_1:-88441119 | None:intergenic |
| ATGTCCAAGCAGTATGAAAT+TGG | 0.409418 | 3_1:-88439405 | None:intergenic |
| AGGTTTGGTACACATTCAAC+CGG | 0.416717 | 3_1:+88440949 | Msa0384970:CDS |
| CTCAGTAAAGTGGAATATAC+TGG | 0.418224 | 3_1:+88442583 | Msa0384970:three_prime_UTR |
| ACCTAGCGCTTGTATATTTG+CGG | 0.429818 | 3_1:-88440930 | None:intergenic |
| GAGCGTGTTAATATAGGTTC+TGG | 0.437567 | 3_1:+88438908 | Msa0384970:CDS |
| CTAGGATGCCCCTTCTTCAA+AGG | 0.443647 | 3_1:+88441173 | Msa0384970:CDS |
| GAGGAATCAAGTCTGCTAAC+TGG | 0.445927 | 3_1:+88440988 | Msa0384970:CDS |
| TGACTAAAATGTTACTCCAT+TGG | 0.449614 | 3_1:-88438558 | None:intergenic |
| GTACTTCTACATGTGAAATC+AGG | 0.449921 | 3_1:-88439235 | None:intergenic |
| CTCCTGGCTCTAAAGTTAGA+TGG | 0.450780 | 3_1:+88438933 | Msa0384970:CDS |
| GCTTCTGGTCTTCACTCCGT+TGG | 0.462666 | 3_1:+88438728 | Msa0384970:CDS |
| CTGACCAATTTCATACTGCT+TGG | 0.468352 | 3_1:+88439401 | Msa0384970:CDS |
| CTAAGCAGACGATAGCCCTT+CGG | 0.468701 | 3_1:-88442472 | None:intergenic |
| AATATAGGTTCTGGTCCTCC+TGG | 0.478496 | 3_1:+88438917 | Msa0384970:CDS |
| GTCAATGAACACAAAATGTC+CGG | 0.479554 | 3_1:-88442370 | None:intergenic |
| TGAAATTATCAGGGTCCCTC+AGG | 0.480922 | 3_1:+88442264 | Msa0384970:CDS |
| AAATATACAAGCGCTAGGTT+TGG | 0.481313 | 3_1:+88440934 | Msa0384970:CDS |
| GATTGCCAAACCTTTGAAGA+AGG | 0.482203 | 3_1:-88441183 | None:intergenic |
| AGGTCCTTGGGGTCCTAACA+TGG | 0.493507 | 3_1:+88440906 | Msa0384970:CDS |
| CGAAGGGCTATCGTCTGCTT+AGG | 0.496103 | 3_1:+88442473 | Msa0384970:CDS |
| CTTACTTGATAATGGAAAGA+AGG | 0.504243 | 3_1:-88438792 | None:intergenic |
| TTGCATTTGGAGCATTTGCT+AGG | 0.504415 | 3_1:+88441155 | Msa0384970:CDS |
| TTTGGATTGTCAGCGTTGGT+TGG | 0.504522 | 3_1:+88438482 | None:intergenic |
| ATCATTGCTGTTGATCAACT+TGG | 0.506443 | 3_1:+88439106 | Msa0384970:CDS |
| TGTCTTGTTTCTCAGTAAAG+TGG | 0.506697 | 3_1:+88442573 | Msa0384970:three_prime_UTR |
| GTTTCTTCTGTAAACCCGGC+AGG | 0.515353 | 3_1:-88439607 | None:intergenic |
| CATGGATACGCTGCTTCTCA+GGG | 0.521168 | 3_1:+88439040 | Msa0384970:CDS |
| GTGGTGGGCACTTTCCACTC+TGG | 0.523249 | 3_1:-88442166 | None:intergenic |
| AGATTATGTTTATCATACAT+TGG | 0.527652 | 3_1:+88441093 | Msa0384970:intron |
| CAGCTGAATGGAAGCCACTT+GGG | 0.528872 | 3_1:-88442395 | None:intergenic |
| AAGCATAAAACACAGCTGAA+TGG | 0.533305 | 3_1:-88442407 | None:intergenic |
| TCAATAATATTGACTTGTTG+GGG | 0.533712 | 3_1:+88442626 | Msa0384970:three_prime_UTR |
| ACAGCTGAATGGAAGCCACT+TGG | 0.534128 | 3_1:-88442396 | None:intergenic |
| ATCTGTTTCTTCTGTAAACC+CGG | 0.536750 | 3_1:-88439611 | None:intergenic |
| ATTGCCAAACCTTTGAAGAA+GGG | 0.549575 | 3_1:-88441182 | None:intergenic |
| CATTGGCGGCCAAAGCTAGT+GGG | 0.553970 | 3_1:+88441110 | Msa0384970:CDS |
| AACCATCTAACTTTAGAGCC+AGG | 0.557305 | 3_1:-88438935 | None:intergenic |
| AGAAGCTCGCAAGCATATGA+AGG | 0.558147 | 3_1:+88442234 | Msa0384970:CDS |
| CATATATATAATCAAACCAA+TGG | 0.562470 | 3_1:+88438542 | Msa0384970:five_prime_UTR |
| GTGGTTCATTACTGGTTGAA+CGG | 0.564216 | 3_1:-88438958 | None:intergenic |
| GGCAGAGGTTTAGGTCCTTG+GGG | 0.564857 | 3_1:+88440895 | Msa0384970:intron |
| ACATTGGCGGCCAAAGCTAG+TGG | 0.568091 | 3_1:+88441109 | Msa0384970:CDS |
| ATGATATGATCGGTTGAAGT+GGG | 0.570401 | 3_1:-88438754 | None:intergenic |
| TTGCCAAACCTTTGAAGAAG+GGG | 0.577063 | 3_1:-88441181 | None:intergenic |
| GAAAATGAATCTCTTCCCGA+AGG | 0.579910 | 3_1:+88442456 | Msa0384970:CDS |
| AAGTTTCGAGCAACATGGAA+GGG | 0.587783 | 3_1:+88439655 | Msa0384970:CDS |
| TTCACATGTAGAAGTACTGA+AGG | 0.587873 | 3_1:+88439241 | Msa0384970:CDS |
| GTAGTTTGGATTGTCAGCGT+TGG | 0.594368 | 3_1:+88438478 | None:intergenic |
| AGCCGTTCTGAACCATCTAT+GGG | 0.595543 | 3_1:+88439678 | Msa0384970:CDS |
| TAAGTTTCGAGCAACATGGA+AGG | 0.597296 | 3_1:+88439654 | Msa0384970:CDS |
| TGCTTCCAAATACGCGCTCA+AGG | 0.600744 | 3_1:+88439445 | Msa0384970:CDS |
| TTATGTTTATCATACATTGG+CGG | 0.606664 | 3_1:+88441096 | Msa0384970:CDS |
| TTAAGTGTTGTACATGCTCA+GGG | 0.606900 | 3_1:-88439573 | None:intergenic |
| AATAACAATATTAATATACA+CGG | 0.611608 | 3_1:-88442515 | None:intergenic |
| GATGATATGATCGGTTGAAG+TGG | 0.613666 | 3_1:-88438755 | None:intergenic |
| ATCTTGCAGAAACTGAGGCA+TGG | 0.614755 | 3_1:+88439339 | Msa0384970:intron |
| ATCATAGGAATAGGATAGCG+TGG | 0.615245 | 3_1:+88438623 | Msa0384970:five_prime_UTR |
| TTCGTAACCATATATGAATG+TGG | 0.615369 | 3_1:-88442185 | None:intergenic |
| CTCAGCGGCGATGATATGAT+CGG | 0.621828 | 3_1:-88438764 | None:intergenic |
| CCATGAACCATAACAAGCGT+AGG | 0.627502 | 3_1:-88439022 | None:intergenic |
| TAACCATATATGAATGTGGT+GGG | 0.627519 | 3_1:-88442181 | None:intergenic |
| TCATTGCTGTTGATCAACTT+GGG | 0.634448 | 3_1:+88439107 | Msa0384970:CDS |
| GTGTTCATTGACAACCCAAG+TGG | 0.634463 | 3_1:+88442381 | Msa0384970:CDS |
| TTTCTTGCAGTGCTCCAGAG+TGG | 0.634871 | 3_1:+88442152 | Msa0384970:intron |
| ATAACAATATTAATATACAC+GGG | 0.638035 | 3_1:-88442514 | None:intergenic |
| ATTGGCGGCCAAAGCTAGTG+GGG | 0.638338 | 3_1:+88441111 | Msa0384970:CDS |
| GGTTCCATGTGAAATTATCA+GGG | 0.643857 | 3_1:+88442255 | Msa0384970:CDS |
| CTTTACTGAGAAACAAGACA+CGG | 0.644730 | 3_1:-88442570 | None:intergenic |
| CGGACCATGTTAGGACCCCA+AGG | 0.646328 | 3_1:-88440910 | None:intergenic |
| AAAATGAATCTCTTCCCGAA+GGG | 0.646555 | 3_1:+88442457 | Msa0384970:CDS |
| AGCAATGATTCTGAAACGAG+AGG | 0.649538 | 3_1:-88439092 | None:intergenic |
| TTACTAAGTTTCGAGCAACA+TGG | 0.649865 | 3_1:+88439650 | Msa0384970:CDS |
| GGAAAGAAGGCGTTTCTCAG+CGG | 0.650667 | 3_1:-88438779 | None:intergenic |
| TCCGCAAATATACAAGCGCT+AGG | 0.656139 | 3_1:+88440929 | Msa0384970:CDS |
| GTAACCATATATGAATGTGG+TGG | 0.658814 | 3_1:-88442182 | None:intergenic |
| TGTTGATCTTGCAGAAACTG+AGG | 0.661163 | 3_1:+88439334 | Msa0384970:intron |
| ATTAGACAAAACGACGACGT+CGG | 0.664772 | 3_1:+88438682 | Msa0384970:CDS |
| TTCCCATAGATGGTTCAGAA+CGG | 0.677131 | 3_1:-88439680 | None:intergenic |
| CGGTTGAAGTGGGAATCCAA+CGG | 0.678476 | 3_1:-88438744 | None:intergenic |
| GAAGATTGGATGAATTACGA+AGG | 0.684343 | 3_1:+88442205 | Msa0384970:CDS |
| GTAACAGTGTTGAGAAAACG+TGG | 0.691173 | 3_1:-88438977 | None:intergenic |
| GGTTTGGTACACATTCAACC+GGG | 0.692249 | 3_1:+88440950 | Msa0384970:CDS |
| GGGACCCTGATAATTTCACA+TGG | 0.704694 | 3_1:-88442259 | None:intergenic |
| CATCTAACTTTAGAGCCAGG+AGG | 0.752922 | 3_1:-88438932 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTACAAATACATATTAA+AGG | - | chr3_1:88440122-88440141 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTCTCTTATTA+TGG | + | chr3_1:88440455-88440474 | Msa0384970:intron | 10.0% |
| !!! | TTAAAATATATTTTTGCATT+TGG | + | chr3_1:88441142-88441161 | Msa0384970:CDS | 10.0% |
| !!! | TTTTTGATGATAAAAATATA+GGG | - | chr3_1:88441851-88441870 | None:intergenic | 10.0% |
| !!! | TTTTTTGATGATAAAAATAT+AGG | - | chr3_1:88441852-88441871 | None:intergenic | 10.0% |
| !! | AATAACAATATTAATATACA+CGG | - | chr3_1:88442518-88442537 | None:intergenic | 10.0% |
| !!! | CTAATAATTAATTTGATCAT+AGG | + | chr3_1:88438608-88438627 | Msa0384970:five_prime_UTR | 15.0% |
| !!! | TAAATAAACTTCAATTTGTT+TGG | + | chr3_1:88438866-88438885 | Msa0384970:intron | 15.0% |
| !!! | ACAATTTTCTGTTATTATAT+TGG | + | chr3_1:88439861-88439880 | Msa0384970:intron | 15.0% |
| !! | TAATAACAATAAAAAGTGAT+TGG | - | chr3_1:88440512-88440531 | None:intergenic | 15.0% |
| !! | TTATTACTCAAATCAAATAT+GGG | + | chr3_1:88440526-88440545 | Msa0384970:intron | 15.0% |
| !! | ACAAAATAATATAACAATGT+TGG | - | chr3_1:88440842-88440861 | None:intergenic | 15.0% |
| !! | CAAGATATTAAATTGATATA+TGG | + | chr3_1:88441016-88441035 | Msa0384970:intron | 15.0% |
| !!! | TTCTTTTTTGTTTTCATTTT+TGG | + | chr3_1:88441364-88441383 | Msa0384970:intron | 15.0% |
| !!! | TCTTTTTTGTTTTCATTTTT+GGG | + | chr3_1:88441365-88441384 | Msa0384970:intron | 15.0% |
| !! | AAAATTAAAACATGAACTTA+AGG | + | chr3_1:88441987-88442006 | Msa0384970:intron | 15.0% |
| !! | AAATTAAAACATGAACTTAA+GGG | + | chr3_1:88441988-88442007 | Msa0384970:intron | 15.0% |
| !! | AGATAAATATCTTGATTATT+AGG | + | chr3_1:88442071-88442090 | Msa0384970:intron | 15.0% |
| !!! | AAAAAATGTTTCATTGTTTT+AGG | - | chr3_1:88442309-88442328 | None:intergenic | 15.0% |
| !! | ATAACAATATTAATATACAC+GGG | - | chr3_1:88442517-88442536 | None:intergenic | 15.0% |
| !!! | ATATATGTTTTGTTTTGAAC+AGG | - | chr3_1:88438529-88438548 | None:intergenic | 20.0% |
| !! | CATATATATAATCAAACCAA+TGG | + | chr3_1:88438542-88438561 | Msa0384970:five_prime_UTR | 20.0% |
| !!! | ATTAATTTGATCATAGGAAT+AGG | + | chr3_1:88438614-88438633 | Msa0384970:five_prime_UTR | 20.0% |
| !!! | TTTCTATATATTTTCACAGT+TGG | + | chr3_1:88439197-88439216 | Msa0384970:intron | 20.0% |
| !!! | TTCTATATATTTTCACAGTT+GGG | + | chr3_1:88439198-88439217 | Msa0384970:intron | 20.0% |
| !! | ACGAAATTTAAATAGGTAAA+CGG | - | chr3_1:88439314-88439333 | None:intergenic | 20.0% |
| !! | ATCAACAACGAAATTTAAAT+AGG | - | chr3_1:88439321-88439340 | None:intergenic | 20.0% |
| !! | AAATGAATAAAATATGCATC+AGG | - | chr3_1:88439543-88439562 | None:intergenic | 20.0% |
| !! | TATCATAGGATGATAAAAAT+GGG | - | chr3_1:88439754-88439773 | None:intergenic | 20.0% |
| !! | TTATCATAGGATGATAAAAA+TGG | - | chr3_1:88439755-88439774 | None:intergenic | 20.0% |
| !!! | TCATAAATAAAAGTATACAC+AGG | - | chr3_1:88439827-88439846 | None:intergenic | 20.0% |
| !!! | GTATACTTTTATTTATGAAG+AGG | + | chr3_1:88439829-88439848 | Msa0384970:intron | 20.0% |
| !! | ACAAATACATATTAAAGGAA+GGG | - | chr3_1:88440117-88440136 | None:intergenic | 20.0% |
| !! | TACAAATACATATTAAAGGA+AGG | - | chr3_1:88440118-88440137 | None:intergenic | 20.0% |
| !! | AGTTCTACTTAATAACTATT+TGG | + | chr3_1:88440188-88440207 | Msa0384970:intron | 20.0% |
| !! | GTTATTACTCAAATCAAATA+TGG | + | chr3_1:88440525-88440544 | Msa0384970:intron | 20.0% |
| !!! | CCATTTTATACTTTATTCTA+TGG | - | chr3_1:88440802-88440821 | None:intergenic | 20.0% |
| !! | CCATAGAATAAAGTATAAAA+TGG | + | chr3_1:88440799-88440818 | Msa0384970:intron | 20.0% |
| !! | TGATAAACATAATCTTCAAT+AGG | - | chr3_1:88441088-88441107 | None:intergenic | 20.0% |
| !! | AGATTATGTTTATCATACAT+TGG | + | chr3_1:88441093-88441112 | Msa0384970:intron | 20.0% |
| !! | AATTAAAACATGAACTTAAG+GGG | + | chr3_1:88441989-88442008 | Msa0384970:intron | 20.0% |
| !! | GATTAAAAAATTATACCTGA+GGG | - | chr3_1:88442282-88442301 | None:intergenic | 20.0% |
| !! | TGATTAAAAAATTATACCTG+AGG | - | chr3_1:88442283-88442302 | None:intergenic | 20.0% |
| !!! | TATCAATAATATTGACTTGT+TGG | + | chr3_1:88442624-88442643 | Msa0384970:three_prime_UTR | 20.0% |
| !!! | ATCAATAATATTGACTTGTT+GGG | + | chr3_1:88442625-88442644 | Msa0384970:three_prime_UTR | 20.0% |
| !!! | TTTTGTTTTGAACAGGTAAA+AGG | - | chr3_1:88438522-88438541 | None:intergenic | 25.0% |
| ! | AATCTAGAGAATCTGAAAAA+TGG | + | chr3_1:88438651-88438670 | Msa0384970:exon | 25.0% |
| ! | TAGTACTACTTACTTGATAA+TGG | - | chr3_1:88438803-88438822 | None:intergenic | 25.0% |
| !! | TAAACTTCAATTTGTTTGGT+AGG | + | chr3_1:88438870-88438889 | Msa0384970:intron | 25.0% |
| !! | TCTATATATTTTCACAGTTG+GGG | + | chr3_1:88439199-88439218 | Msa0384970:intron | 25.0% |
| !! | TATGAAATTGGTCAGATTTT+TGG | - | chr3_1:88439396-88439415 | None:intergenic | 25.0% |
| ! | GTAAAAGAAAGTTAAGAAGT+CGG | - | chr3_1:88439513-88439532 | None:intergenic | 25.0% |
| !! | CTTAACTTTCTTTTACCAAA+CGG | + | chr3_1:88439517-88439536 | Msa0384970:intron | 25.0% |
| ! | TAAAATTAGATTCCCATAGA+TGG | - | chr3_1:88439693-88439712 | None:intergenic | 25.0% |
| !! | TTTTACCTGACAATTTTTTG+AGG | - | chr3_1:88439718-88439737 | None:intergenic | 25.0% |
| ! | CAAAAAATTGTCAGGTAAAA+AGG | + | chr3_1:88439718-88439737 | Msa0384970:intron | 25.0% |
| !!! | TTCTGTTATTATATTGGTTC+TGG | + | chr3_1:88439867-88439886 | Msa0384970:intron | 25.0% |
| ! | TATTACTAACTCTTAAGTCA+TGG | + | chr3_1:88440277-88440296 | Msa0384970:intron | 25.0% |
| ! | AAATCAAATATGGGATTAGA+GGG | + | chr3_1:88440535-88440554 | Msa0384970:intron | 25.0% |
| ! | TATCAGGTTTCAATAAATGA+GGG | + | chr3_1:88440618-88440637 | Msa0384970:intron | 25.0% |
| !!! | AATTTTCATTTCTGTTTCTG+TGG | + | chr3_1:88440712-88440731 | Msa0384970:intron | 25.0% |
| ! | TTATGTTTATCATACATTGG+CGG | + | chr3_1:88441096-88441115 | Msa0384970:CDS | 25.0% |
| ! | ACAAGAACAATTAAGTCAAT+AGG | - | chr3_1:88441455-88441474 | None:intergenic | 25.0% |
| !!! | TGACTTAATTGTTCTTGTTT+TGG | + | chr3_1:88441457-88441476 | Msa0384970:intron | 25.0% |
| ! | ATGTTTGGGAAAAATAGAAT+AGG | + | chr3_1:88441555-88441574 | Msa0384970:intron | 25.0% |
| !! | TGATTGTGTTGGTAAAAAAT+TGG | - | chr3_1:88441742-88441761 | None:intergenic | 25.0% |
| ! | TGATAAAAATATAGGGTGAA+AGG | - | chr3_1:88441844-88441863 | None:intergenic | 25.0% |
| ! | CATCAAAAAAGAAAAAAGCT+TGG | + | chr3_1:88441862-88441881 | Msa0384970:intron | 25.0% |
| ! | TTATTAGGATTAATATCCCA+TGG | + | chr3_1:88442086-88442105 | Msa0384970:intron | 25.0% |
| ! | AAATTAATTACTTCTATCGC+AGG | + | chr3_1:88442347-88442366 | Msa0384970:intron | 25.0% |
| !!! | TCAATAATATTGACTTGTTG+GGG | + | chr3_1:88442626-88442645 | Msa0384970:three_prime_UTR | 25.0% |
| TGACTAAAATGTTACTCCAT+TGG | - | chr3_1:88438561-88438580 | None:intergenic | 30.0% | |
| !! | CTTACTTGATAATGGAAAGA+AGG | - | chr3_1:88438795-88438814 | None:intergenic | 30.0% |
| !!! | ATGGTTCATTGATTCTTTTG+AGG | + | chr3_1:88439358-88439377 | Msa0384970:CDS | 30.0% |
| !!! | TCATTGATTCTTTTGAGGAA+TGG | + | chr3_1:88439363-88439382 | Msa0384970:CDS | 30.0% |
| !! | ATTTTAATGCAATGCAGCAA+TGG | - | chr3_1:88439479-88439498 | None:intergenic | 30.0% |
| ! | GCATGTACAACACTTAATTT+TGG | + | chr3_1:88439579-88439598 | Msa0384970:CDS | 30.0% |
| ! | TGTACAACACTTAATTTTGG+TGG | + | chr3_1:88439582-88439601 | Msa0384970:CDS | 30.0% |
| !! | GTACAACACTTAATTTTGGT+GGG | + | chr3_1:88439583-88439602 | Msa0384970:CDS | 30.0% |
| TTAGTAACAAACTCAGTCTT+TGG | - | chr3_1:88439637-88439656 | None:intergenic | 30.0% | |
| TTACACCTCAAAAAATTGTC+AGG | + | chr3_1:88439710-88439729 | Msa0384970:CDS | 30.0% | |
| AATGTGTGCTAACTTATCAT+AGG | - | chr3_1:88439768-88439787 | None:intergenic | 30.0% | |
| AGAGTCTTCTACTATATATC+AGG | + | chr3_1:88439924-88439943 | Msa0384970:intron | 30.0% | |
| GAGTCTTCTACTATATATCA+GGG | + | chr3_1:88439925-88439944 | Msa0384970:intron | 30.0% | |
| !! | TTGTCTTTGAAATGAAGTGT+TGG | + | chr3_1:88440037-88440056 | Msa0384970:intron | 30.0% |
| TTGTTATAACTGAAGTTGAC+CGG | + | chr3_1:88440141-88440160 | Msa0384970:intron | 30.0% | |
| GTAATCTTAAGTCAATATGC+CGG | - | chr3_1:88440163-88440182 | None:intergenic | 30.0% | |
| ! | AGTCATGGATGTAATCATTT+TGG | + | chr3_1:88440292-88440311 | Msa0384970:intron | 30.0% |
| TCAACCATTAATTAAGCCAA+GGG | - | chr3_1:88440332-88440351 | None:intergenic | 30.0% | |
| TTAATTAATGGTTGAGGACT+TGG | + | chr3_1:88440337-88440356 | Msa0384970:intron | 30.0% | |
| !! | AGCTTTATTGTATATGAGCA+CGG | + | chr3_1:88440429-88440448 | Msa0384970:intron | 30.0% |
| TTATTATGGTTACAAGCAGA+AGG | + | chr3_1:88440469-88440488 | Msa0384970:intron | 30.0% | |
| CAAATCAAATATGGGATTAG+AGG | + | chr3_1:88440534-88440553 | Msa0384970:intron | 30.0% | |
| AATCAAATATGGGATTAGAG+GGG | + | chr3_1:88440536-88440555 | Msa0384970:intron | 30.0% | |
| ! | TTATGCTACTTCTAAGTATC+AGG | + | chr3_1:88440602-88440621 | Msa0384970:intron | 30.0% |
| GTATCAGGTTTCAATAAATG+AGG | + | chr3_1:88440617-88440636 | Msa0384970:intron | 30.0% | |
| !!! | AATCACCCTTACATGTTTTT+TGG | + | chr3_1:88440752-88440771 | Msa0384970:intron | 30.0% |
| CTTAAAACAGCTAATCAGAT+GGG | - | chr3_1:88441217-88441236 | None:intergenic | 30.0% | |
| ACTTAAAACAGCTAATCAGA+TGG | - | chr3_1:88441218-88441237 | None:intergenic | 30.0% | |
| ATCTCTATGTATGACATGAT+TGG | - | chr3_1:88441290-88441309 | None:intergenic | 30.0% | |
| !!! | GTGGTGCTACAATTTTTATA+AGG | - | chr3_1:88441423-88441442 | None:intergenic | 30.0% |
| ACAATTAAGTCAATAGGAGT+GGG | - | chr3_1:88441449-88441468 | None:intergenic | 30.0% | |
| AACAATTAAGTCAATAGGAG+TGG | - | chr3_1:88441450-88441469 | None:intergenic | 30.0% | |
| AACAGTTATCTTGATTGTGT+TGG | - | chr3_1:88441753-88441772 | None:intergenic | 30.0% | |
| ! | TAATTTTCTTCCTGAATGCT+TGG | - | chr3_1:88441974-88441993 | None:intergenic | 30.0% |
| ACTTAAGGGGAAAAAAATTC+AGG | + | chr3_1:88442002-88442021 | Msa0384970:intron | 30.0% | |
| !! | TTTTAGCCAATGTCTTGTTA+AGG | + | chr3_1:88442110-88442129 | Msa0384970:intron | 30.0% |
| TAACCATATATGAATGTGGT+GGG | - | chr3_1:88442184-88442203 | None:intergenic | 30.0% | |
| TTCGTAACCATATATGAATG+TGG | - | chr3_1:88442188-88442207 | None:intergenic | 30.0% | |
| TCATATATGGTTACGAAGAT+TGG | + | chr3_1:88442191-88442210 | Msa0384970:CDS | 30.0% | |
| ! | AGATTCATTTTCCGAATTTG+GGG | - | chr3_1:88442448-88442467 | None:intergenic | 30.0% |
| ! | GAGATTCATTTTCCGAATTT+GGG | - | chr3_1:88442449-88442468 | None:intergenic | 30.0% |
| ! | AGAGATTCATTTTCCGAATT+TGG | - | chr3_1:88442450-88442469 | None:intergenic | 30.0% |
| TTCAGCACAAAAACATATTC+TGG | + | chr3_1:88442653-88442672 | Msa0384970:three_prime_UTR | 30.0% | |
| CTAGAGAATCTGAAAAATGG+CGG | + | chr3_1:88438654-88438673 | Msa0384970:exon | 35.0% | |
| CATCGAAATCTAAAAGCTTC+TGG | + | chr3_1:88438713-88438732 | Msa0384970:CDS | 35.0% | |
| ATGATATGATCGGTTGAAGT+GGG | - | chr3_1:88438757-88438776 | None:intergenic | 35.0% | |
| ! | TTCAATTTGTTTGGTAGGAC+TGG | + | chr3_1:88438875-88438894 | Msa0384970:intron | 35.0% |
| ! | TCAATTTGTTTGGTAGGACT+GGG | + | chr3_1:88438876-88438895 | Msa0384970:intron | 35.0% |
| ! | GTTCAAGAGCGTGTTAATAT+AGG | + | chr3_1:88438902-88438921 | Msa0384970:CDS | 35.0% |
| ! | ATCATTGCTGTTGATCAACT+TGG | + | chr3_1:88439106-88439125 | Msa0384970:CDS | 35.0% |
| ! | TCATTGCTGTTGATCAACTT+GGG | + | chr3_1:88439107-88439126 | Msa0384970:CDS | 35.0% |
| ! | ATATATTTTCACAGTTGGGG+CGG | + | chr3_1:88439202-88439221 | Msa0384970:intron | 35.0% |
| GTACTTCTACATGTGAAATC+AGG | - | chr3_1:88439238-88439257 | None:intergenic | 35.0% | |
| !! | TTCACATGTAGAAGTACTGA+AGG | + | chr3_1:88439241-88439260 | Msa0384970:CDS | 35.0% |
| TACTTTGTTGCTCGACTTTA+AGG | + | chr3_1:88439285-88439304 | Msa0384970:intron | 35.0% | |
| ATGTCCAAGCAGTATGAAAT+TGG | - | chr3_1:88439408-88439427 | None:intergenic | 35.0% | |
| ! | ATACTGCTTGGACATTCTTT+TGG | + | chr3_1:88439413-88439432 | Msa0384970:CDS | 35.0% |
| ! | TTAAGTGTTGTACATGCTCA+GGG | - | chr3_1:88439576-88439595 | None:intergenic | 35.0% |
| ! | ATTAAGTGTTGTACATGCTC+AGG | - | chr3_1:88439577-88439596 | None:intergenic | 35.0% |
| ! | ATCTGTTTCTTCTGTAAACC+CGG | - | chr3_1:88439614-88439633 | None:intergenic | 35.0% |
| TTACTAAGTTTCGAGCAACA+TGG | + | chr3_1:88439650-88439669 | Msa0384970:CDS | 35.0% | |
| TCTACAGTATCAACAAACTG+AGG | - | chr3_1:88439907-88439926 | None:intergenic | 35.0% | |
| GAGAACCTAAGTCAATATGT+CGG | - | chr3_1:88440238-88440257 | None:intergenic | 35.0% | |
| ! | GGATGAATTTTTATGACCCT+TGG | + | chr3_1:88440313-88440332 | Msa0384970:intron | 35.0% |
| ATGACCCTTGGCTTAATTAA+TGG | + | chr3_1:88440325-88440344 | Msa0384970:intron | 35.0% | |
| CTCAACCATTAATTAAGCCA+AGG | - | chr3_1:88440333-88440352 | None:intergenic | 35.0% | |
| CTTGGCTTAATTAATGGTTG+AGG | + | chr3_1:88440331-88440350 | Msa0384970:intron | 35.0% | |
| ATACAATAAAGCTCTTGCCA+CGG | - | chr3_1:88440422-88440441 | None:intergenic | 35.0% | |
| AGAGTCATTCTTCTACTTGT+AGG | + | chr3_1:88440561-88440580 | Msa0384970:intron | 35.0% | |
| TGAGGGAAAGCTAGAAAAAA+TGG | + | chr3_1:88440635-88440654 | Msa0384970:intron | 35.0% | |
| AAATATCATTCCACGAAGCA+TGG | + | chr3_1:88440662-88440681 | Msa0384970:intron | 35.0% | |
| GTTGGCCAAAAAACATGTAA+GGG | - | chr3_1:88440760-88440779 | None:intergenic | 35.0% | |
| TGTTGGCCAAAAAACATGTA+AGG | - | chr3_1:88440761-88440780 | None:intergenic | 35.0% | |
| GTGACTATTCTCATGTTTGT+TGG | - | chr3_1:88440778-88440797 | None:intergenic | 35.0% | |
| ! | CAGTTTTTCTGATGCATTTG+TGG | + | chr3_1:88440874-88440893 | Msa0384970:intron | 35.0% |
| AAATATACAAGCGCTAGGTT+TGG | + | chr3_1:88440934-88440953 | Msa0384970:CDS | 35.0% | |
| ! | ATTGCCAAACCTTTGAAGAA+GGG | - | chr3_1:88441185-88441204 | None:intergenic | 35.0% |
| ! | AAGAACAACATATACCGACT+AGG | + | chr3_1:88441525-88441544 | Msa0384970:intron | 35.0% |
| AAAAAGAAAAAAGCTTGGCC+AGG | + | chr3_1:88441867-88441886 | Msa0384970:intron | 35.0% | |
| AAAAGAAAAAAGCTTGGCCA+GGG | + | chr3_1:88441868-88441887 | Msa0384970:intron | 35.0% | |
| AAATGTCTAACCAAGCATTC+AGG | + | chr3_1:88441961-88441980 | Msa0384970:intron | 35.0% | |
| ! | AGACATTGGCTAAAAACCAT+GGG | - | chr3_1:88442105-88442124 | None:intergenic | 35.0% |
| ! | AAGACATTGGCTAAAAACCA+TGG | - | chr3_1:88442106-88442125 | None:intergenic | 35.0% |
| GTAACCATATATGAATGTGG+TGG | - | chr3_1:88442185-88442204 | None:intergenic | 35.0% | |
| GAAGATTGGATGAATTACGA+AGG | + | chr3_1:88442205-88442224 | Msa0384970:CDS | 35.0% | |
| AGGTTCCATGTGAAATTATC+AGG | + | chr3_1:88442254-88442273 | Msa0384970:CDS | 35.0% | |
| GGTTCCATGTGAAATTATCA+GGG | + | chr3_1:88442255-88442274 | Msa0384970:CDS | 35.0% | |
| GTCAATGAACACAAAATGTC+CGG | - | chr3_1:88442373-88442392 | None:intergenic | 35.0% | |
| AAGCATAAAACACAGCTGAA+TGG | - | chr3_1:88442410-88442429 | None:intergenic | 35.0% | |
| AAGGTTTCTTACCCCAAATT+CGG | + | chr3_1:88442434-88442453 | Msa0384970:CDS | 35.0% | |
| AAAATGAATCTCTTCCCGAA+GGG | + | chr3_1:88442457-88442476 | Msa0384970:CDS | 35.0% | |
| CTTTACTGAGAAACAAGACA+CGG | - | chr3_1:88442573-88442592 | None:intergenic | 35.0% | |
| !! | TGTCTTGTTTCTCAGTAAAG+TGG | + | chr3_1:88442573-88442592 | Msa0384970:three_prime_UTR | 35.0% |
| CTCAGTAAAGTGGAATATAC+TGG | + | chr3_1:88442583-88442602 | Msa0384970:three_prime_UTR | 35.0% | |
| ATCATAGGAATAGGATAGCG+TGG | + | chr3_1:88438623-88438642 | Msa0384970:five_prime_UTR | 40.0% | |
| ATTAGACAAAACGACGACGT+CGG | + | chr3_1:88438682-88438701 | Msa0384970:CDS | 40.0% | |
| GATGATATGATCGGTTGAAG+TGG | - | chr3_1:88438758-88438777 | None:intergenic | 40.0% | |
| GAGCGTGTTAATATAGGTTC+TGG | + | chr3_1:88438908-88438927 | Msa0384970:CDS | 40.0% | |
| !! | AACCATCTAACTTTAGAGCC+AGG | - | chr3_1:88438938-88438957 | None:intergenic | 40.0% |
| ! | GTGGTTCATTACTGGTTGAA+CGG | - | chr3_1:88438961-88438980 | None:intergenic | 40.0% |
| GAGAAAACGTGGTTCATTAC+TGG | - | chr3_1:88438969-88438988 | None:intergenic | 40.0% | |
| ! | GTAACAGTGTTGAGAAAACG+TGG | - | chr3_1:88438980-88438999 | None:intergenic | 40.0% |
| ATAACAAGCGTAGGAGAATC+AGG | - | chr3_1:88439016-88439035 | None:intergenic | 40.0% | |
| ! | TGATTCTCCTACGCTTGTTA+TGG | + | chr3_1:88439015-88439034 | Msa0384970:CDS | 40.0% |
| !! | AGCAATGATTCTGAAACGAG+AGG | - | chr3_1:88439095-88439114 | None:intergenic | 40.0% |
| TGTTGATCTTGCAGAAACTG+AGG | + | chr3_1:88439334-88439353 | Msa0384970:intron | 40.0% | |
| CTGACCAATTTCATACTGCT+TGG | + | chr3_1:88439401-88439420 | Msa0384970:CDS | 40.0% | |
| AAAATATGCATCAGGCCGTT+TGG | - | chr3_1:88439535-88439554 | None:intergenic | 40.0% | |
| TAAGTTTCGAGCAACATGGA+AGG | + | chr3_1:88439654-88439673 | Msa0384970:CDS | 40.0% | |
| AAGTTTCGAGCAACATGGAA+GGG | + | chr3_1:88439655-88439674 | Msa0384970:CDS | 40.0% | |
| TTCCCATAGATGGTTCAGAA+CGG | - | chr3_1:88439683-88439702 | None:intergenic | 40.0% | |
| AGTATCAACAAACTGAGGTG+AGG | - | chr3_1:88439902-88439921 | None:intergenic | 40.0% | |
| !! | GTAGACCGACATATTGACTT+AGG | + | chr3_1:88440230-88440249 | Msa0384970:intron | 40.0% |
| TAGGTTCTCTTTGTCACTGT+TGG | + | chr3_1:88440249-88440268 | Msa0384970:intron | 40.0% | |
| AGGTTCTCTTTGTCACTGTT+GGG | + | chr3_1:88440250-88440269 | Msa0384970:intron | 40.0% | |
| TAAAAAGTGATTGGCAACCC+AGG | - | chr3_1:88440503-88440522 | None:intergenic | 40.0% | |
| AAAATTCCTTCCCGATACCA+GGG | - | chr3_1:88440698-88440717 | None:intergenic | 40.0% | |
| ! | TGTTTCTGTGGAATTAGCCA+TGG | + | chr3_1:88440724-88440743 | Msa0384970:intron | 40.0% |
| GTATATTTGCGGACCATGTT+AGG | - | chr3_1:88440922-88440941 | None:intergenic | 40.0% | |
| ACCTAGCGCTTGTATATTTG+CGG | - | chr3_1:88440933-88440952 | None:intergenic | 40.0% | |
| ! | AGGTTTGGTACACATTCAAC+CGG | + | chr3_1:88440949-88440968 | Msa0384970:CDS | 40.0% |
| ! | CTCTTCAATCAGTTTTTGCC+CGG | - | chr3_1:88440971-88440990 | None:intergenic | 40.0% |
| ATCAAGTCTGCTAACTGGTA+TGG | + | chr3_1:88440993-88441012 | Msa0384970:intron | 40.0% | |
| ! | TTGCATTTGGAGCATTTGCT+AGG | + | chr3_1:88441155-88441174 | Msa0384970:CDS | 40.0% |
| ! | TTGCCAAACCTTTGAAGAAG+GGG | - | chr3_1:88441184-88441203 | None:intergenic | 40.0% |
| ! | GATTGCCAAACCTTTGAAGA+AGG | - | chr3_1:88441186-88441205 | None:intergenic | 40.0% |
| GAATCGCATCTCAAAAAAGC+AGG | - | chr3_1:88441347-88441366 | None:intergenic | 40.0% | |
| CAAACATGTAGTTGCCTAGT+CGG | - | chr3_1:88441542-88441561 | None:intergenic | 40.0% | |
| GACTAGGCAACTACATGTTT+GGG | + | chr3_1:88441541-88441560 | Msa0384970:intron | 40.0% | |
| AATAGGTTAGTAGCTGCTGA+TGG | + | chr3_1:88441572-88441591 | Msa0384970:intron | 40.0% | |
| CATATCTATCCTGTATCACC+AGG | + | chr3_1:88441626-88441645 | Msa0384970:intron | 40.0% | |
| ATGTGCATCCTGATTTCTGA+GGG | + | chr3_1:88441654-88441673 | Msa0384970:intron | 40.0% | |
| GAGTAAAGGGAGCAGTAAAT+AGG | + | chr3_1:88441702-88441721 | Msa0384970:intron | 40.0% | |
| TGCGCCTTGTATCATTTGTA+AGG | + | chr3_1:88441772-88441791 | Msa0384970:intron | 40.0% | |
| GCGCCTTGTATCATTTGTAA+GGG | + | chr3_1:88441773-88441792 | Msa0384970:intron | 40.0% | |
| GAGCCCTTACAAATGATACA+AGG | - | chr3_1:88441779-88441798 | None:intergenic | 40.0% | |
| TAATGCTCCACTGCAATGTA+GGG | - | chr3_1:88441820-88441839 | None:intergenic | 40.0% | |
| ATAATGCTCCACTGCAATGT+AGG | - | chr3_1:88441821-88441840 | None:intergenic | 40.0% | |
| TTGACCTTGAATTTGTGGTG+TGG | + | chr3_1:88441893-88441912 | Msa0384970:intron | 40.0% | |
| TATGCCACACCACAAATTCA+AGG | - | chr3_1:88441900-88441919 | None:intergenic | 40.0% | |
| TGATGAATATCTGTGCCTCT+TGG | + | chr3_1:88441928-88441947 | Msa0384970:intron | 40.0% | |
| GATGAATATCTGTGCCTCTT+GGG | + | chr3_1:88441929-88441948 | Msa0384970:intron | 40.0% | |
| CATTTCCATTCTTACCCAAG+AGG | - | chr3_1:88441946-88441965 | None:intergenic | 40.0% | |
| TGCAAGAAAGTGATGTAGAG+AGG | - | chr3_1:88442141-88442160 | None:intergenic | 40.0% | |
| TAATTACTTCTATCGCAGGC+CGG | + | chr3_1:88442351-88442370 | Msa0384970:intron | 40.0% | |
| ! | CTGTGTTTTATGCTTGTCGA+AGG | + | chr3_1:88442415-88442434 | Msa0384970:CDS | 40.0% |
| GAAAATGAATCTCTTCCCGA+AGG | + | chr3_1:88442456-88442475 | Msa0384970:CDS | 40.0% | |
| ! | AATATAGGTTCTGGTCCTCC+TGG | + | chr3_1:88438917-88438936 | Msa0384970:CDS | 45.0% |
| !! | CATCTAACTTTAGAGCCAGG+AGG | - | chr3_1:88438935-88438954 | None:intergenic | 45.0% |
| !! | CTCCTGGCTCTAAAGTTAGA+TGG | + | chr3_1:88438933-88438952 | Msa0384970:CDS | 45.0% |
| CCATGAACCATAACAAGCGT+AGG | - | chr3_1:88439025-88439044 | None:intergenic | 45.0% | |
| !! | CCTACGCTTGTTATGGTTCA+TGG | + | chr3_1:88439022-88439041 | Msa0384970:CDS | 45.0% |
| ATCTTGCAGAAACTGAGGCA+TGG | + | chr3_1:88439339-88439358 | Msa0384970:intron | 45.0% | |
| ! | CTGCTTGGACATTCTTTTGG+TGG | + | chr3_1:88439416-88439435 | Msa0384970:CDS | 45.0% |
| !! | TTAATTTTGGTGGGACCTGC+CGG | + | chr3_1:88439592-88439611 | Msa0384970:CDS | 45.0% |
| ! | AGCCGTTCTGAACCATCTAT+GGG | + | chr3_1:88439678-88439697 | Msa0384970:CDS | 45.0% |
| AATGCATTTCGCACGAGTTC+AGG | + | chr3_1:88440075-88440094 | Msa0384970:intron | 45.0% | |
| CGAGTTCAGGTCAATAATGC+TGG | + | chr3_1:88440088-88440107 | Msa0384970:intron | 45.0% | |
| GTTGCCTTCATGTGACTAAG+AGG | + | chr3_1:88440361-88440380 | Msa0384970:intron | 45.0% | |
| GTGACCTCTTAGTCACATGA+AGG | - | chr3_1:88440368-88440387 | None:intergenic | 45.0% | |
| TGTGACTAAGAGGTCACAAG+TGG | + | chr3_1:88440371-88440390 | Msa0384970:intron | 45.0% | |
| ! | ATTGGTGATTCCATGCTTCG+TGG | - | chr3_1:88440675-88440694 | None:intergenic | 45.0% |
| GAATCACCAATCCCTGGTAT+CGG | + | chr3_1:88440684-88440703 | Msa0384970:intron | 45.0% | |
| AATCACCAATCCCTGGTATC+GGG | + | chr3_1:88440685-88440704 | Msa0384970:intron | 45.0% | |
| GAAAATTCCTTCCCGATACC+AGG | - | chr3_1:88440699-88440718 | None:intergenic | 45.0% | |
| CTGTGGAATTAGCCATGGAA+AGG | + | chr3_1:88440729-88440748 | Msa0384970:intron | 45.0% | |
| GTAAGGGTGATTCCTTTCCA+TGG | - | chr3_1:88440744-88440763 | None:intergenic | 45.0% | |
| TTCTGATGCATTTGTGGCAG+AGG | + | chr3_1:88440880-88440899 | Msa0384970:intron | 45.0% | |
| TGCATTTGTGGCAGAGGTTT+AGG | + | chr3_1:88440886-88440905 | Msa0384970:intron | 45.0% | |
| TCCGCAAATATACAAGCGCT+AGG | + | chr3_1:88440929-88440948 | Msa0384970:CDS | 45.0% | |
| ! | GGTTTGGTACACATTCAACC+GGG | + | chr3_1:88440950-88440969 | Msa0384970:CDS | 45.0% |
| CGGGCAAAAACTGATTGAAG+AGG | + | chr3_1:88440969-88440988 | Msa0384970:CDS | 45.0% | |
| GAGGAATCAAGTCTGCTAAC+TGG | + | chr3_1:88440988-88441007 | Msa0384970:CDS | 45.0% | |
| ATGCCCCTTCTTCAAAGGTT+TGG | + | chr3_1:88441178-88441197 | Msa0384970:intron | 45.0% | |
| ! | AAAGCAGGCTCGATTGACTT+CGG | - | chr3_1:88441332-88441351 | None:intergenic | 45.0% |
| CGACTAGGCAACTACATGTT+TGG | + | chr3_1:88441540-88441559 | Msa0384970:intron | 45.0% | |
| CATGTGCATCCTGATTTCTG+AGG | + | chr3_1:88441653-88441672 | Msa0384970:intron | 45.0% | |
| TGTGCATCCTGATTTCTGAG+GGG | + | chr3_1:88441655-88441674 | Msa0384970:intron | 45.0% | |
| ! | ATCCTGATTTCTGAGGGGAA+TGG | + | chr3_1:88441660-88441679 | Msa0384970:intron | 45.0% |
| ! | TGATTTCTGAGGGGAATGGT+GGG | + | chr3_1:88441664-88441683 | Msa0384970:intron | 45.0% |
| TAAGGGCTCTTTAAGCCCTA+AGG | + | chr3_1:88441790-88441809 | Msa0384970:intron | 45.0% | |
| GCAATGTAGGGAAGACCTTA+GGG | - | chr3_1:88441808-88441827 | None:intergenic | 45.0% | |
| TGCAATGTAGGGAAGACCTT+AGG | - | chr3_1:88441809-88441828 | None:intergenic | 45.0% | |
| CAAATTCAAGGTCAACTCCC+TGG | - | chr3_1:88441888-88441907 | None:intergenic | 45.0% | |
| GGGAGTTGACCTTGAATTTG+TGG | + | chr3_1:88441888-88441907 | Msa0384970:intron | 45.0% | |
| GTGAGGCCTTAACAAGACAT+TGG | - | chr3_1:88442119-88442138 | None:intergenic | 45.0% | |
| GAAAGTGATGTAGAGAGGTG+AGG | - | chr3_1:88442136-88442155 | None:intergenic | 45.0% | |
| GTGCCCACCACATTCATATA+TGG | + | chr3_1:88442178-88442197 | Msa0384970:CDS | 45.0% | |
| CATATGCTTGCGAGCTTCTT+GGG | - | chr3_1:88442233-88442252 | None:intergenic | 45.0% | |
| TCATATGCTTGCGAGCTTCT+TGG | - | chr3_1:88442234-88442253 | None:intergenic | 45.0% | |
| AGAAGCTCGCAAGCATATGA+AGG | + | chr3_1:88442234-88442253 | Msa0384970:CDS | 45.0% | |
| GGGACCCTGATAATTTCACA+TGG | - | chr3_1:88442262-88442281 | None:intergenic | 45.0% | |
| TGAAATTATCAGGGTCCCTC+AGG | + | chr3_1:88442264-88442283 | Msa0384970:CDS | 45.0% | |
| GTGTTCATTGACAACCCAAG+TGG | + | chr3_1:88442381-88442400 | Msa0384970:CDS | 45.0% | |
| !!! | TTATTTTAAATTTTAAGATT+AGG | - | chr3_1:88440016-88440035 | None:intergenic | 5.0% |
| CGGTTGAAGTGGGAATCCAA+CGG | - | chr3_1:88438747-88438766 | None:intergenic | 50.0% | |
| CTCAGCGGCGATGATATGAT+CGG | - | chr3_1:88438767-88438786 | None:intergenic | 50.0% | |
| !! | GGAAAGAAGGCGTTTCTCAG+CGG | - | chr3_1:88438782-88438801 | None:intergenic | 50.0% |
| TCATGGATACGCTGCTTCTC+AGG | + | chr3_1:88439039-88439058 | Msa0384970:CDS | 50.0% | |
| CATGGATACGCTGCTTCTCA+GGG | + | chr3_1:88439040-88439059 | Msa0384970:CDS | 50.0% | |
| TGCTTCCAAATACGCGCTCA+AGG | + | chr3_1:88439445-88439464 | Msa0384970:CDS | 50.0% | |
| ACTGACCTTGAGCGCGTATT+TGG | - | chr3_1:88439453-88439472 | None:intergenic | 50.0% | |
| !! | TAATTTTGGTGGGACCTGCC+GGG | + | chr3_1:88439593-88439612 | Msa0384970:CDS | 50.0% |
| GTTTCTTCTGTAAACCCGGC+AGG | - | chr3_1:88439610-88439629 | None:intergenic | 50.0% | |
| ! | GAGCCGTTCTGAACCATCTA+TGG | + | chr3_1:88439677-88439696 | Msa0384970:CDS | 50.0% |
| TCACAAGTGGTAAGACTGCC+TGG | + | chr3_1:88440384-88440403 | Msa0384970:intron | 50.0% | |
| CACAAGTGGTAAGACTGCCT+GGG | + | chr3_1:88440385-88440404 | Msa0384970:intron | 50.0% | |
| ! | AAGCAGAAGGAGCTTGTTCC+TGG | + | chr3_1:88440482-88440501 | Msa0384970:intron | 50.0% |
| ! | AGCAGAAGGAGCTTGTTCCT+GGG | + | chr3_1:88440483-88440502 | Msa0384970:intron | 50.0% |
| AGCATGGAATCACCAATCCC+TGG | + | chr3_1:88440678-88440697 | Msa0384970:intron | 50.0% | |
| TGGCAGAGGTTTAGGTCCTT+GGG | + | chr3_1:88440894-88440913 | Msa0384970:intron | 50.0% | |
| CTAGGATGCCCCTTCTTCAA+AGG | + | chr3_1:88441173-88441192 | Msa0384970:CDS | 50.0% | |
| AGTCAATAGGAGTGGGCAAG+TGG | - | chr3_1:88441442-88441461 | None:intergenic | 50.0% | |
| ACATGTGCTCCTGGTGATAC+AGG | - | chr3_1:88441638-88441657 | None:intergenic | 50.0% | |
| CACCATTCCCCTCAGAAATC+AGG | - | chr3_1:88441665-88441684 | None:intergenic | 50.0% | |
| ! | CTGATTTCTGAGGGGAATGG+TGG | + | chr3_1:88441663-88441682 | Msa0384970:intron | 50.0% |
| ! | GATTTCTGAGGGGAATGGTG+GGG | + | chr3_1:88441665-88441684 | Msa0384970:intron | 50.0% |
| AGGTCTTCCCTACATTGCAG+TGG | + | chr3_1:88441810-88441829 | Msa0384970:intron | 50.0% | |
| CTGTGCCTCTTGGGTAAGAA+TGG | + | chr3_1:88441938-88441957 | Msa0384970:intron | 50.0% | |
| TTTCTTGCAGTGCTCCAGAG+TGG | + | chr3_1:88442152-88442171 | Msa0384970:intron | 50.0% | |
| CAGCTGAATGGAAGCCACTT+GGG | - | chr3_1:88442398-88442417 | None:intergenic | 50.0% | |
| ACAGCTGAATGGAAGCCACT+TGG | - | chr3_1:88442399-88442418 | None:intergenic | 50.0% | |
| TAAGCAGACGATAGCCCTTC+GGG | - | chr3_1:88442474-88442493 | None:intergenic | 50.0% | |
| CTAAGCAGACGATAGCCCTT+CGG | - | chr3_1:88442475-88442494 | None:intergenic | 50.0% | |
| ! | GCTTCTGGTCTTCACTCCGT+TGG | + | chr3_1:88438728-88438747 | Msa0384970:CDS | 55.0% |
| GTGGTAAGACTGCCTGGGAA+AGG | + | chr3_1:88440390-88440409 | Msa0384970:intron | 55.0% | |
| CCACGGAAGAATCCTTTCCC+AGG | - | chr3_1:88440405-88440424 | None:intergenic | 55.0% | |
| CCTGGGAAAGGATTCTTCCG+TGG | + | chr3_1:88440402-88440421 | Msa0384970:intron | 55.0% | |
| ! | ACCAATCCCTGGTATCGGGA+AGG | + | chr3_1:88440689-88440708 | Msa0384970:intron | 55.0% |
| TCCTTCCCGATACCAGGGAT+TGG | - | chr3_1:88440693-88440712 | None:intergenic | 55.0% | |
| GTGGCAGAGGTTTAGGTCCT+TGG | + | chr3_1:88440893-88440912 | Msa0384970:intron | 55.0% | |
| GGCAGAGGTTTAGGTCCTTG+GGG | + | chr3_1:88440895-88440914 | Msa0384970:intron | 55.0% | |
| AGGTCCTTGGGGTCCTAACA+TGG | + | chr3_1:88440906-88440925 | Msa0384970:CDS | 55.0% | |
| ACATTGGCGGCCAAAGCTAG+TGG | + | chr3_1:88441109-88441128 | Msa0384970:CDS | 55.0% | |
| CATTGGCGGCCAAAGCTAGT+GGG | + | chr3_1:88441110-88441129 | Msa0384970:CDS | 55.0% | |
| ATTGGCGGCCAAAGCTAGTG+GGG | + | chr3_1:88441111-88441130 | Msa0384970:CDS | 55.0% | |
| ! | ACACAGCTCCCCACTAGCTT+TGG | - | chr3_1:88441122-88441141 | None:intergenic | 55.0% |
| TCAGGATGCACATGTGCTCC+TGG | - | chr3_1:88441647-88441666 | None:intergenic | 55.0% | |
| CGAAGGGCTATCGTCTGCTT+AGG | + | chr3_1:88442473-88442492 | Msa0384970:CDS | 55.0% | |
| CGGACCATGTTAGGACCCCA+AGG | - | chr3_1:88440913-88440932 | None:intergenic | 60.0% | |
| ! | AGGGGAATGGTGGGGACTGT+GGG | + | chr3_1:88441673-88441692 | Msa0384970:intron | 60.0% |
| ! | AATGGTGGGGACTGTGGGGA+GGG | + | chr3_1:88441678-88441697 | Msa0384970:intron | 60.0% |
| ACTGTGGGGAGGGGGAGTAA+AGG | + | chr3_1:88441688-88441707 | Msa0384970:intron | 60.0% | |
| CTGTGGGGAGGGGGAGTAAA+GGG | + | chr3_1:88441689-88441708 | Msa0384970:intron | 60.0% | |
| !! | GTGGTGGGCACTTTCCACTC+TGG | - | chr3_1:88442169-88442188 | None:intergenic | 60.0% |
| ! | GAGGGGAATGGTGGGGACTG+TGG | + | chr3_1:88441672-88441691 | Msa0384970:intron | 65.0% |
| ! | GGGGAATGGTGGGGACTGTG+GGG | + | chr3_1:88441674-88441693 | Msa0384970:intron | 65.0% |
| ! | GAATGGTGGGGACTGTGGGG+AGG | + | chr3_1:88441677-88441696 | Msa0384970:intron | 65.0% |
| ! | ATGGTGGGGACTGTGGGGAG+GGG | + | chr3_1:88441679-88441698 | Msa0384970:intron | 65.0% |
| TGGTGGGGACTGTGGGGAGG+GGG | + | chr3_1:88441680-88441699 | Msa0384970:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 88438490 | 88442680 | 88438490 | ID=Msa0384970;Name=Msa0384970 |
| chr3_1 | mRNA | 88438490 | 88442680 | 88438490 | ID=Msa0384970-mRNA-1;Parent=Msa0384970;Name=Msa0384970-mRNA-1;_AED=0.07;_eAED=0.07;_QI=180|1|1|1|1|1|9|186|387 |
| chr3_1 | exon | 88438490 | 88438809 | 88438490 | ID=Msa0384970-mRNA-1:exon:23800;Parent=Msa0384970-mRNA-1 |
| chr3_1 | exon | 88438892 | 88439128 | 88438892 | ID=Msa0384970-mRNA-1:exon:23801;Parent=Msa0384970-mRNA-1 |
| chr3_1 | exon | 88439216 | 88439262 | 88439216 | ID=Msa0384970-mRNA-1:exon:23802;Parent=Msa0384970-mRNA-1 |
| chr3_1 | exon | 88439348 | 88439466 | 88439348 | ID=Msa0384970-mRNA-1:exon:23803;Parent=Msa0384970-mRNA-1 |
| chr3_1 | exon | 88439571 | 88439731 | 88439571 | ID=Msa0384970-mRNA-1:exon:23804;Parent=Msa0384970-mRNA-1 |
| chr3_1 | exon | 88440900 | 88441009 | 88440900 | ID=Msa0384970-mRNA-1:exon:23805;Parent=Msa0384970-mRNA-1 |
| chr3_1 | exon | 88441095 | 88441194 | 88441095 | ID=Msa0384970-mRNA-1:exon:23806;Parent=Msa0384970-mRNA-1 |
| chr3_1 | exon | 88442162 | 88442285 | 88442162 | ID=Msa0384970-mRNA-1:exon:23807;Parent=Msa0384970-mRNA-1 |
| chr3_1 | exon | 88442369 | 88442680 | 88442369 | ID=Msa0384970-mRNA-1:exon:23808;Parent=Msa0384970-mRNA-1 |
| chr3_1 | five_prime_UTR | 88438490 | 88438669 | 88438490 | ID=Msa0384970-mRNA-1:five_prime_utr;Parent=Msa0384970-mRNA-1 |
| chr3_1 | CDS | 88438670 | 88438809 | 88438670 | ID=Msa0384970-mRNA-1:cds;Parent=Msa0384970-mRNA-1 |
| chr3_1 | CDS | 88438892 | 88439128 | 88438892 | ID=Msa0384970-mRNA-1:cds;Parent=Msa0384970-mRNA-1 |
| chr3_1 | CDS | 88439216 | 88439262 | 88439216 | ID=Msa0384970-mRNA-1:cds;Parent=Msa0384970-mRNA-1 |
| chr3_1 | CDS | 88439348 | 88439466 | 88439348 | ID=Msa0384970-mRNA-1:cds;Parent=Msa0384970-mRNA-1 |
| chr3_1 | CDS | 88439571 | 88439731 | 88439571 | ID=Msa0384970-mRNA-1:cds;Parent=Msa0384970-mRNA-1 |
| chr3_1 | CDS | 88440900 | 88441009 | 88440900 | ID=Msa0384970-mRNA-1:cds;Parent=Msa0384970-mRNA-1 |
| chr3_1 | CDS | 88441095 | 88441194 | 88441095 | ID=Msa0384970-mRNA-1:cds;Parent=Msa0384970-mRNA-1 |
| chr3_1 | CDS | 88442162 | 88442285 | 88442162 | ID=Msa0384970-mRNA-1:cds;Parent=Msa0384970-mRNA-1 |
| chr3_1 | CDS | 88442369 | 88442494 | 88442369 | ID=Msa0384970-mRNA-1:cds;Parent=Msa0384970-mRNA-1 |
| chr3_1 | three_prime_UTR | 88442495 | 88442680 | 88442495 | ID=Msa0384970-mRNA-1:three_prime_utr;Parent=Msa0384970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
