Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0329870 | AES66446.1 | 98.611 | 72 | 1 | 0 | 1 | 72 | 1 | 72 | 3.56e-44 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0329870 | sp|Q9SKY1|CSTM4_ARATH | 45.205 | 73 | 37 | 2 | 1 | 72 | 1 | 71 | 2.09e-13 | 61.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0329870 | G7IH42 | 98.611 | 72 | 1 | 0 | 1 | 72 | 1 | 72 | 1.70e-44 | 146 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0137120 | Msa0329870 | 0.802457 | 5.558861e-49 | -8.615850e-47 |
| Msa0329870 | Msa0384970 | 0.817537 | 3.131717e-52 | -8.615850e-47 |
| Msa0329870 | Msa0968320 | 0.825343 | 4.936580e-54 | -8.615850e-47 |
| Msa0329870 | Msa1171060 | 0.803108 | 4.080196e-49 | -8.615850e-47 |
| Msa0329870 | Msa1257870 | 0.828647 | 8.002653e-55 | -8.615850e-47 |
| Msa0329870 | Msa1454290 | 0.834451 | 2.975140e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0329870 | MtrunA17_Chr2g0312011 | 98.611 | 72 | 1 | 0 | 1 | 72 | 1 | 72 | 3.28e-48 | 146 |
| Msa0329870 | MtrunA17_Chr2g0312051 | 60.526 | 76 | 26 | 1 | 1 | 72 | 1 | 76 | 2.78e-18 | 71.2 |
| Msa0329870 | MtrunA17_Chr4g0048281 | 63.158 | 76 | 21 | 3 | 4 | 72 | 5 | 80 | 5.34e-16 | 65.5 |
| Msa0329870 | MtrunA17_Chr1g0166081 | 54.667 | 75 | 25 | 3 | 6 | 72 | 6 | 79 | 1.00e-13 | 59.7 |
| Msa0329870 | MtrunA17_Chr5g0417951 | 53.333 | 75 | 26 | 3 | 6 | 72 | 6 | 79 | 3.51e-13 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0329870 | AT2G32190.1 | 45.205 | 73 | 37 | 2 | 1 | 72 | 1 | 71 | 2.13e-14 | 61.6 |
| Msa0329870 | AT2G32210.1 | 45.205 | 73 | 37 | 2 | 1 | 72 | 1 | 71 | 4.10e-14 | 60.8 |
| Msa0329870 | AT2G32200.2 | 44.444 | 63 | 31 | 2 | 14 | 72 | 46 | 108 | 2.33e-11 | 55.1 |
| Msa0329870 | AT2G32200.1 | 44.444 | 63 | 31 | 2 | 14 | 72 | 12 | 74 | 4.71e-11 | 53.1 |
Find 41 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGCAGGGGTGATGGTTTC+TGG | 0.154253 | 2_4:+43822881 | Msa0329870:CDS |
| TACACAGATTCTTATTAATT+AGG | 0.251351 | 2_4:-43824411 | None:intergenic |
| TAAAGTTCCATGTTACAAAT+TGG | 0.271469 | 2_4:-43824459 | None:intergenic |
| AATATGTGTGCTTGTCTTCA+TGG | 0.289012 | 2_4:+43824352 | Msa0329870:three_prime_UTR |
| TCCAAGTGTGTGTGATTAAC+TGG | 0.369868 | 2_4:-43822449 | None:intergenic |
| AGCTGTTCCACCACCACCTA+TGG | 0.399384 | 2_4:+43822810 | Msa0329870:CDS |
| ATAAGAATCTGTGTATCCTA+TGG | 0.432880 | 2_4:+43824419 | Msa0329870:three_prime_UTR |
| GGGTTGTTCTGACCCACTGC+TGG | 0.444478 | 2_4:-43822784 | None:intergenic |
| ACTTTGTTGTGGATCATCCT+TGG | 0.456048 | 2_4:-43822842 | None:intergenic |
| ATTATGTTGTTGTTGTGCCC+TGG | 0.464412 | 2_4:+43824288 | Msa0329870:CDS |
| TCGATCAGAGGCAACAGTCC+AGG | 0.484393 | 2_4:-43824306 | None:intergenic |
| TTCCAATTAAAACAACTAGC+AGG | 0.486226 | 2_4:+43822866 | Msa0329870:CDS |
| TTGTTGTGGATCATCCTTGG+AGG | 0.492972 | 2_4:-43822839 | None:intergenic |
| GGATAACCCATAGGTGGTGG+TGG | 0.506331 | 2_4:-43822817 | None:intergenic |
| AAAACAACTAGCAGGGGTGA+TGG | 0.528737 | 2_4:+43822874 | Msa0329870:CDS |
| ATCAATCAACAACAATCTCC+TGG | 0.529469 | 2_4:+43822551 | Msa0329870:CDS |
| CACATATTCTATAAATCCAT+TGG | 0.536992 | 2_4:-43824337 | None:intergenic |
| GGTGGTGGTGGAACAGCTTG+AGG | 0.543912 | 2_4:-43822805 | None:intergenic |
| TCCAGTTAATCACACACACT+TGG | 0.546579 | 2_4:+43822448 | Msa0329870:five_prime_UTR |
| TAAGAATCTGTGTATCCTAT+GGG | 0.552274 | 2_4:+43824420 | Msa0329870:three_prime_UTR |
| GTGGTGGTGGAACAGCTTGA+GGG | 0.555087 | 2_4:-43822804 | None:intergenic |
| GAGGGATAACCCATAGGTGG+TGG | 0.556470 | 2_4:-43822820 | None:intergenic |
| CGATCAGAGGCAACAGTCCA+GGG | 0.561083 | 2_4:-43824305 | None:intergenic |
| TCCAATTAAAACAACTAGCA+GGG | 0.562056 | 2_4:+43822867 | Msa0329870:CDS |
| GATTCTTATTAATTAGGTGA+GGG | 0.570945 | 2_4:-43824405 | None:intergenic |
| ATTCATACCAATTTGTAACA+TGG | 0.571018 | 2_4:+43824452 | Msa0329870:three_prime_UTR |
| AGGGGTGATGGTTTCTGGAA+AGG | 0.573043 | 2_4:+43822886 | Msa0329870:CDS |
| TTAATTGGAACACTTTGTTG+TGG | 0.578655 | 2_4:-43822853 | None:intergenic |
| TGTTGTGGATCATCCTTGGA+GGG | 0.580290 | 2_4:-43822838 | None:intergenic |
| AGATTCTTATTAATTAGGTG+AGG | 0.582575 | 2_4:-43824406 | None:intergenic |
| CTGATCGAATATCATACCAA+TGG | 0.590733 | 2_4:+43824321 | Msa0329870:exon |
| GCTGTTCCACCACCACCTAT+GGG | 0.592890 | 2_4:+43822811 | Msa0329870:CDS |
| ACCTATGGGTTATCCCTCCA+AGG | 0.593969 | 2_4:+43822825 | Msa0329870:CDS |
| GTGATGGTTTCTGGAAAGGA+TGG | 0.594474 | 2_4:+43822890 | Msa0329870:CDS |
| TTGGTATGATATTCGATCAG+AGG | 0.615679 | 2_4:-43824318 | None:intergenic |
| GTTACTGCATATCCAGCAGT+GGG | 0.629495 | 2_4:+43822772 | Msa0329870:intron |
| CCAATTAAAACAACTAGCAG+GGG | 0.643519 | 2_4:+43822868 | Msa0329870:CDS |
| AGTTACTGCATATCCAGCAG+TGG | 0.643933 | 2_4:+43822771 | Msa0329870:intron |
| TCCTTGGAGGGATAACCCAT+AGG | 0.667495 | 2_4:-43822826 | None:intergenic |
| TAACTGGACGATGAGAAGAA+CGG | 0.674180 | 2_4:-43822433 | None:intergenic |
| TTGGAGGGATAACCCATAGG+TGG | 0.675232 | 2_4:-43822823 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTCTTTTTTCTAAA+AGG | + | chr2_4:43824017-43824036 | Msa0329870:intron | 10.0% |
| !!! | TATTTTTTCTTTTTTCTAAA+AGG | + | chr2_4:43824017-43824036 | Msa0329870:intron | 10.0% |
| !! | TAATTTAAAAAAAGCTTACC+AGG | - | chr2_4:43822572-43822591 | None:intergenic | 20.0% |
| !!! | TTCATTTCTCTAAGAAATAA+TGG | + | chr2_4:43822707-43822726 | Msa0329870:intron | 20.0% |
| !! | TTATATACCATTGATCAATA+AGG | + | chr2_4:43823215-43823234 | Msa0329870:intron | 20.0% |
| !! | TATATACCATTGATCAATAA+GGG | + | chr2_4:43823216-43823235 | Msa0329870:intron | 20.0% |
| !!! | TTCGTTTTGTATTTTGATAA+TGG | + | chr2_4:43823401-43823420 | Msa0329870:intron | 20.0% |
| !!! | TAAAAGAACATATTTTCCAA+TGG | + | chr2_4:43823505-43823524 | Msa0329870:intron | 20.0% |
| !!! | TTTATAGTGTTATTTTGTTC+AGG | - | chr2_4:43823680-43823699 | None:intergenic | 20.0% |
| !!! | AATTCATTGATTTTTACTCA+TGG | - | chr2_4:43823747-43823766 | None:intergenic | 20.0% |
| !! | TATTTATGCTAAAAACAGTT+TGG | - | chr2_4:43824221-43824240 | None:intergenic | 20.0% |
| !! | TACACAGATTCTTATTAATT+AGG | - | chr2_4:43824414-43824433 | None:intergenic | 20.0% |
| !! | TAATTTAAAAAAAGCTTACC+AGG | - | chr2_4:43822572-43822591 | None:intergenic | 20.0% |
| !!! | TTCATTTCTCTAAGAAATAA+TGG | + | chr2_4:43822707-43822726 | Msa0329870:intron | 20.0% |
| !! | TTATATACCATTGATCAATA+AGG | + | chr2_4:43823215-43823234 | Msa0329870:intron | 20.0% |
| !! | TATATACCATTGATCAATAA+GGG | + | chr2_4:43823216-43823235 | Msa0329870:intron | 20.0% |
| !!! | TTCGTTTTGTATTTTGATAA+TGG | + | chr2_4:43823401-43823420 | Msa0329870:intron | 20.0% |
| !!! | TAAAAGAACATATTTTCCAA+TGG | + | chr2_4:43823505-43823524 | Msa0329870:intron | 20.0% |
| !!! | TTTATAGTGTTATTTTGTTC+AGG | - | chr2_4:43823680-43823699 | None:intergenic | 20.0% |
| !!! | AATTCATTGATTTTTACTCA+TGG | - | chr2_4:43823747-43823766 | None:intergenic | 20.0% |
| !! | TATTTATGCTAAAAACAGTT+TGG | - | chr2_4:43824221-43824240 | None:intergenic | 20.0% |
| !! | TACACAGATTCTTATTAATT+AGG | - | chr2_4:43824414-43824433 | None:intergenic | 20.0% |
| !!! | CTAGCTTTGAATATAAAACA+TGG | - | chr2_4:43822658-43822677 | None:intergenic | 25.0% |
| ! | TGAAATACACAACACAAATT+AGG | - | chr2_4:43822745-43822764 | None:intergenic | 25.0% |
| ! | TATGTATGTTTATCTTCGTT+AGG | + | chr2_4:43823049-43823068 | Msa0329870:intron | 25.0% |
| !!! | TTGATAATGGATCGATTAAA+TGG | + | chr2_4:43823414-43823433 | Msa0329870:intron | 25.0% |
| !! | AGCATAAAAGCATAATACAA+AGG | - | chr2_4:43823566-43823585 | None:intergenic | 25.0% |
| ! | ATATATGTGAGAACTCAATT+TGG | - | chr2_4:43823620-43823639 | None:intergenic | 25.0% |
| !! | TGATTTGGAATTGGATTTAA+TGG | - | chr2_4:43823645-43823664 | None:intergenic | 25.0% |
| ! | TATATACCATTGACCAATAA+GGG | - | chr2_4:43824059-43824078 | None:intergenic | 25.0% |
| ! | TTATATACCATTGACCAATA+AGG | - | chr2_4:43824060-43824079 | None:intergenic | 25.0% |
| ! | GTGTTACATATATCAAAATC+CGG | - | chr2_4:43824115-43824134 | None:intergenic | 25.0% |
| ! | CACATATTCTATAAATCCAT+TGG | - | chr2_4:43824340-43824359 | None:intergenic | 25.0% |
| ! | GATTCTTATTAATTAGGTGA+GGG | - | chr2_4:43824408-43824427 | None:intergenic | 25.0% |
| ! | AGATTCTTATTAATTAGGTG+AGG | - | chr2_4:43824409-43824428 | None:intergenic | 25.0% |
| ! | ATTCATACCAATTTGTAACA+TGG | + | chr2_4:43824452-43824471 | Msa0329870:three_prime_UTR | 25.0% |
| ! | TAAAGTTCCATGTTACAAAT+TGG | - | chr2_4:43824462-43824481 | None:intergenic | 25.0% |
| !!! | CTAGCTTTGAATATAAAACA+TGG | - | chr2_4:43822658-43822677 | None:intergenic | 25.0% |
| ! | TGAAATACACAACACAAATT+AGG | - | chr2_4:43822745-43822764 | None:intergenic | 25.0% |
| ! | TATGTATGTTTATCTTCGTT+AGG | + | chr2_4:43823049-43823068 | Msa0329870:intron | 25.0% |
| !!! | TTGATAATGGATCGATTAAA+TGG | + | chr2_4:43823414-43823433 | Msa0329870:intron | 25.0% |
| !! | AGCATAAAAGCATAATACAA+AGG | - | chr2_4:43823566-43823585 | None:intergenic | 25.0% |
| ! | ATATATGTGAGAACTCAATT+TGG | - | chr2_4:43823620-43823639 | None:intergenic | 25.0% |
| !! | TGATTTGGAATTGGATTTAA+TGG | - | chr2_4:43823645-43823664 | None:intergenic | 25.0% |
| ! | TATATACCATTGACCAATAA+GGG | - | chr2_4:43824059-43824078 | None:intergenic | 25.0% |
| ! | TTATATACCATTGACCAATA+AGG | - | chr2_4:43824060-43824079 | None:intergenic | 25.0% |
| ! | GTGTTACATATATCAAAATC+CGG | - | chr2_4:43824115-43824134 | None:intergenic | 25.0% |
| ! | CACATATTCTATAAATCCAT+TGG | - | chr2_4:43824340-43824359 | None:intergenic | 25.0% |
| ! | GATTCTTATTAATTAGGTGA+GGG | - | chr2_4:43824408-43824427 | None:intergenic | 25.0% |
| ! | AGATTCTTATTAATTAGGTG+AGG | - | chr2_4:43824409-43824428 | None:intergenic | 25.0% |
| ! | ATTCATACCAATTTGTAACA+TGG | + | chr2_4:43824452-43824471 | Msa0329870:three_prime_UTR | 25.0% |
| ! | TAAAGTTCCATGTTACAAAT+TGG | - | chr2_4:43824462-43824481 | None:intergenic | 25.0% |
| TTAATTGGAACACTTTGTTG+TGG | - | chr2_4:43822856-43822875 | None:intergenic | 30.0% | |
| TTCCAATTAAAACAACTAGC+AGG | + | chr2_4:43822866-43822885 | Msa0329870:CDS | 30.0% | |
| TCCAATTAAAACAACTAGCA+GGG | + | chr2_4:43822867-43822886 | Msa0329870:CDS | 30.0% | |
| !!! | AGTTTTTTTCTCCTTCGTTA+GGG | - | chr2_4:43823081-43823100 | None:intergenic | 30.0% |
| !!! | TAGTTTTTTTCTCCTTCGTT+AGG | - | chr2_4:43823082-43823101 | None:intergenic | 30.0% |
| ! | AAGCTCAACTTCATTTTATG+CGG | - | chr2_4:43823151-43823170 | None:intergenic | 30.0% |
| !!! | GGTTTTGTTTTGAAGAAGAA+GGG | - | chr2_4:43823927-43823946 | None:intergenic | 30.0% |
| ACAAACACAGTACTGTAATT+GGG | - | chr2_4:43823373-43823392 | None:intergenic | 30.0% | |
| !!! | TTTTGTTCAGGTTGGTTATT+GGG | - | chr2_4:43823668-43823687 | None:intergenic | 30.0% |
| !!! | ATTTTGTTCAGGTTGGTTAT+TGG | - | chr2_4:43823669-43823688 | None:intergenic | 30.0% |
| !!! | TAGTGTTATTTTGTTCAGGT+TGG | - | chr2_4:43823676-43823695 | None:intergenic | 30.0% |
| AGGAAGAAAGAAGAAGAAAA+GGG | + | chr2_4:43823843-43823862 | Msa0329870:intron | 30.0% | |
| !!! | GGTTTTGTTTTGAAGAAGAA+GGG | + | chr2_4:43823927-43823946 | Msa0329870:intron | 30.0% |
| CACAACTGCAAAAAAAGAAA+AGG | - | chr2_4:43824264-43824283 | None:intergenic | 30.0% | |
| ATAAGAATCTGTGTATCCTA+TGG | + | chr2_4:43824419-43824438 | Msa0329870:three_prime_UTR | 30.0% | |
| TAAGAATCTGTGTATCCTAT+GGG | + | chr2_4:43824420-43824439 | Msa0329870:three_prime_UTR | 30.0% | |
| TTAATTGGAACACTTTGTTG+TGG | - | chr2_4:43822856-43822875 | None:intergenic | 30.0% | |
| TTCCAATTAAAACAACTAGC+AGG | + | chr2_4:43822866-43822885 | Msa0329870:CDS | 30.0% | |
| TCCAATTAAAACAACTAGCA+GGG | + | chr2_4:43822867-43822886 | Msa0329870:CDS | 30.0% | |
| !!! | AGTTTTTTTCTCCTTCGTTA+GGG | - | chr2_4:43823081-43823100 | None:intergenic | 30.0% |
| !!! | TAGTTTTTTTCTCCTTCGTT+AGG | - | chr2_4:43823082-43823101 | None:intergenic | 30.0% |
| ! | AAGCTCAACTTCATTTTATG+CGG | - | chr2_4:43823151-43823170 | None:intergenic | 30.0% |
| !!! | GGTTTTGTTTTGAAGAAGAA+GGG | - | chr2_4:43823927-43823946 | None:intergenic | 30.0% |
| ACAAACACAGTACTGTAATT+GGG | - | chr2_4:43823373-43823392 | None:intergenic | 30.0% | |
| !!! | TTTTGTTCAGGTTGGTTATT+GGG | - | chr2_4:43823668-43823687 | None:intergenic | 30.0% |
| !!! | ATTTTGTTCAGGTTGGTTAT+TGG | - | chr2_4:43823669-43823688 | None:intergenic | 30.0% |
| !!! | TAGTGTTATTTTGTTCAGGT+TGG | - | chr2_4:43823676-43823695 | None:intergenic | 30.0% |
| AGGAAGAAAGAAGAAGAAAA+GGG | + | chr2_4:43823843-43823862 | Msa0329870:intron | 30.0% | |
| !!! | GGTTTTGTTTTGAAGAAGAA+GGG | + | chr2_4:43823927-43823946 | Msa0329870:intron | 30.0% |
| CACAACTGCAAAAAAAGAAA+AGG | - | chr2_4:43824264-43824283 | None:intergenic | 30.0% | |
| ATAAGAATCTGTGTATCCTA+TGG | + | chr2_4:43824419-43824438 | Msa0329870:three_prime_UTR | 30.0% | |
| TAAGAATCTGTGTATCCTAT+GGG | + | chr2_4:43824420-43824439 | Msa0329870:three_prime_UTR | 30.0% | |
| ATCAATCAACAACAATCTCC+TGG | + | chr2_4:43822551-43822570 | Msa0329870:CDS | 35.0% | |
| CCAATTAAAACAACTAGCAG+GGG | + | chr2_4:43822868-43822887 | Msa0329870:CDS | 35.0% | |
| GCATAAAATGAAGTTGAGCT+TGG | + | chr2_4:43823150-43823169 | Msa0329870:intron | 35.0% | |
| ! | AAGTTGAGCTTGGATTTTGA+TGG | + | chr2_4:43823160-43823179 | Msa0329870:intron | 35.0% |
| TCCATCTATGTTACACAAGT+GGG | - | chr2_4:43823188-43823207 | None:intergenic | 35.0% | |
| ATCCATCTATGTTACACAAG+TGG | - | chr2_4:43823189-43823208 | None:intergenic | 35.0% | |
| ! | TAAAAAAAAGGTGTGCCACT+TGG | - | chr2_4:43823246-43823265 | None:intergenic | 35.0% |
| !!! | TTTGTTTTGAAGAAGAAGGG+AGG | - | chr2_4:43823930-43823949 | None:intergenic | 35.0% |
| !!! | GGGTTTTGTTTTGAAGAAGA+AGG | - | chr2_4:43823926-43823945 | None:intergenic | 35.0% |
| CACAAACACAGTACTGTAAT+TGG | - | chr2_4:43823374-43823393 | None:intergenic | 35.0% | |
| AGACATAGTTGTAGTTCCAT+TGG | - | chr2_4:43823524-43823543 | None:intergenic | 35.0% | |
| ! | GTTATTGGGTGATTTGGAAT+TGG | - | chr2_4:43823654-43823673 | None:intergenic | 35.0% |
| ! | AATCTGAAGTTATCGACAGT+TGG | + | chr2_4:43823786-43823805 | Msa0329870:intron | 35.0% |
| GAGGAAGAAAGAAGAAGAAA+AGG | + | chr2_4:43823842-43823861 | Msa0329870:intron | 35.0% | |
| GAAAGAAGAAGAAAAGGGTT+TGG | + | chr2_4:43823848-43823867 | Msa0329870:intron | 35.0% | |
| !!! | GGGTTTTGTTTTGAAGAAGA+AGG | + | chr2_4:43823926-43823945 | Msa0329870:intron | 35.0% |
| !!! | TTTGTTTTGAAGAAGAAGGG+AGG | + | chr2_4:43823930-43823949 | Msa0329870:intron | 35.0% |
| !!! | TTCTTTTTTTGCAGTTGTGC+TGG | + | chr2_4:43824265-43824284 | Msa0329870:intron | 35.0% |
| TTGGTATGATATTCGATCAG+AGG | - | chr2_4:43824321-43824340 | None:intergenic | 35.0% | |
| CTGATCGAATATCATACCAA+TGG | + | chr2_4:43824321-43824340 | Msa0329870:exon | 35.0% | |
| AATATGTGTGCTTGTCTTCA+TGG | + | chr2_4:43824352-43824371 | Msa0329870:three_prime_UTR | 35.0% | |
| ATCAATCAACAACAATCTCC+TGG | + | chr2_4:43822551-43822570 | Msa0329870:CDS | 35.0% | |
| CCAATTAAAACAACTAGCAG+GGG | + | chr2_4:43822868-43822887 | Msa0329870:CDS | 35.0% | |
| GCATAAAATGAAGTTGAGCT+TGG | + | chr2_4:43823150-43823169 | Msa0329870:intron | 35.0% | |
| ! | AAGTTGAGCTTGGATTTTGA+TGG | + | chr2_4:43823160-43823179 | Msa0329870:intron | 35.0% |
| TCCATCTATGTTACACAAGT+GGG | - | chr2_4:43823188-43823207 | None:intergenic | 35.0% | |
| ATCCATCTATGTTACACAAG+TGG | - | chr2_4:43823189-43823208 | None:intergenic | 35.0% | |
| ! | TAAAAAAAAGGTGTGCCACT+TGG | - | chr2_4:43823246-43823265 | None:intergenic | 35.0% |
| !!! | TTTGTTTTGAAGAAGAAGGG+AGG | - | chr2_4:43823930-43823949 | None:intergenic | 35.0% |
| !!! | GGGTTTTGTTTTGAAGAAGA+AGG | - | chr2_4:43823926-43823945 | None:intergenic | 35.0% |
| CACAAACACAGTACTGTAAT+TGG | - | chr2_4:43823374-43823393 | None:intergenic | 35.0% | |
| AGACATAGTTGTAGTTCCAT+TGG | - | chr2_4:43823524-43823543 | None:intergenic | 35.0% | |
| ! | GTTATTGGGTGATTTGGAAT+TGG | - | chr2_4:43823654-43823673 | None:intergenic | 35.0% |
| ! | AATCTGAAGTTATCGACAGT+TGG | + | chr2_4:43823786-43823805 | Msa0329870:intron | 35.0% |
| GAGGAAGAAAGAAGAAGAAA+AGG | + | chr2_4:43823842-43823861 | Msa0329870:intron | 35.0% | |
| GAAAGAAGAAGAAAAGGGTT+TGG | + | chr2_4:43823848-43823867 | Msa0329870:intron | 35.0% | |
| !!! | GGGTTTTGTTTTGAAGAAGA+AGG | + | chr2_4:43823926-43823945 | Msa0329870:intron | 35.0% |
| !!! | TTTGTTTTGAAGAAGAAGGG+AGG | + | chr2_4:43823930-43823949 | Msa0329870:intron | 35.0% |
| !!! | TTCTTTTTTTGCAGTTGTGC+TGG | + | chr2_4:43824265-43824284 | Msa0329870:intron | 35.0% |
| TTGGTATGATATTCGATCAG+AGG | - | chr2_4:43824321-43824340 | None:intergenic | 35.0% | |
| CTGATCGAATATCATACCAA+TGG | + | chr2_4:43824321-43824340 | Msa0329870:exon | 35.0% | |
| AATATGTGTGCTTGTCTTCA+TGG | + | chr2_4:43824352-43824371 | Msa0329870:three_prime_UTR | 35.0% | |
| TCCAGTTAATCACACACACT+TGG | + | chr2_4:43822448-43822467 | Msa0329870:five_prime_UTR | 40.0% | |
| TCCAAGTGTGTGTGATTAAC+TGG | - | chr2_4:43822452-43822471 | None:intergenic | 40.0% | |
| ! | ACTTTGTTGTGGATCATCCT+TGG | - | chr2_4:43822845-43822864 | None:intergenic | 40.0% |
| !!! | CCCCTGCTAGTTGTTTTAAT+TGG | - | chr2_4:43822871-43822890 | None:intergenic | 40.0% |
| TTAGGTTCAAACCCTAACGA+AGG | + | chr2_4:43823067-43823086 | Msa0329870:intron | 40.0% | |
| TCCCACTTGTGTAACATAGA+TGG | + | chr2_4:43823184-43823203 | Msa0329870:intron | 40.0% | |
| TTTGGCTGAAGATCTATCAC+TGG | - | chr2_4:43823602-43823621 | None:intergenic | 40.0% | |
| ! | AGGTTGGTTATTGGGTGATT+TGG | - | chr2_4:43823660-43823679 | None:intergenic | 40.0% |
| !! | GACAGTTGGTGGAAAATTGA+CGG | + | chr2_4:43823800-43823819 | Msa0329870:intron | 40.0% |
| ! | TTTCTAAAAGGTGTGCCACT+TGG | + | chr2_4:43824029-43824048 | Msa0329870:intron | 40.0% |
| ATCCCTCAATGTTACACAAG+TGG | + | chr2_4:43824086-43824105 | Msa0329870:intron | 40.0% | |
| TCCCTCAATGTTACACAAGT+GGG | + | chr2_4:43824087-43824106 | Msa0329870:intron | 40.0% | |
| TCCCACTTGTGTAACATTGA+GGG | - | chr2_4:43824091-43824110 | None:intergenic | 40.0% | |
| ATCCCACTTGTGTAACATTG+AGG | - | chr2_4:43824092-43824111 | None:intergenic | 40.0% | |
| AATGTTACACAAGTGGGATC+CGG | + | chr2_4:43824093-43824112 | Msa0329870:intron | 40.0% | |
| ! | ATTATGTTGTTGTTGTGCCC+TGG | + | chr2_4:43824288-43824307 | Msa0329870:CDS | 40.0% |
| ! | ATGAATTTTCGCTGTCCCAT+AGG | - | chr2_4:43824438-43824457 | None:intergenic | 40.0% |
| TCCAGTTAATCACACACACT+TGG | + | chr2_4:43822448-43822467 | Msa0329870:five_prime_UTR | 40.0% | |
| TCCAAGTGTGTGTGATTAAC+TGG | - | chr2_4:43822452-43822471 | None:intergenic | 40.0% | |
| ! | ACTTTGTTGTGGATCATCCT+TGG | - | chr2_4:43822845-43822864 | None:intergenic | 40.0% |
| !!! | CCCCTGCTAGTTGTTTTAAT+TGG | - | chr2_4:43822871-43822890 | None:intergenic | 40.0% |
| TTAGGTTCAAACCCTAACGA+AGG | + | chr2_4:43823067-43823086 | Msa0329870:intron | 40.0% | |
| TCCCACTTGTGTAACATAGA+TGG | + | chr2_4:43823184-43823203 | Msa0329870:intron | 40.0% | |
| TTTGGCTGAAGATCTATCAC+TGG | - | chr2_4:43823602-43823621 | None:intergenic | 40.0% | |
| ! | AGGTTGGTTATTGGGTGATT+TGG | - | chr2_4:43823660-43823679 | None:intergenic | 40.0% |
| !! | GACAGTTGGTGGAAAATTGA+CGG | + | chr2_4:43823800-43823819 | Msa0329870:intron | 40.0% |
| ! | TTTCTAAAAGGTGTGCCACT+TGG | + | chr2_4:43824029-43824048 | Msa0329870:intron | 40.0% |
| ATCCCTCAATGTTACACAAG+TGG | + | chr2_4:43824086-43824105 | Msa0329870:intron | 40.0% | |
| TCCCTCAATGTTACACAAGT+GGG | + | chr2_4:43824087-43824106 | Msa0329870:intron | 40.0% | |
| TCCCACTTGTGTAACATTGA+GGG | - | chr2_4:43824091-43824110 | None:intergenic | 40.0% | |
| ATCCCACTTGTGTAACATTG+AGG | - | chr2_4:43824092-43824111 | None:intergenic | 40.0% | |
| AATGTTACACAAGTGGGATC+CGG | + | chr2_4:43824093-43824112 | Msa0329870:intron | 40.0% | |
| ! | ATTATGTTGTTGTTGTGCCC+TGG | + | chr2_4:43824288-43824307 | Msa0329870:CDS | 40.0% |
| ! | ATGAATTTTCGCTGTCCCAT+AGG | - | chr2_4:43824438-43824457 | None:intergenic | 40.0% |
| AGTTACTGCATATCCAGCAG+TGG | + | chr2_4:43822771-43822790 | Msa0329870:intron | 45.0% | |
| GTTACTGCATATCCAGCAGT+GGG | + | chr2_4:43822772-43822791 | Msa0329870:intron | 45.0% | |
| TGTTGTGGATCATCCTTGGA+GGG | - | chr2_4:43822841-43822860 | None:intergenic | 45.0% | |
| TTGTTGTGGATCATCCTTGG+AGG | - | chr2_4:43822842-43822861 | None:intergenic | 45.0% | |
| AAAACAACTAGCAGGGGTGA+TGG | + | chr2_4:43822874-43822893 | Msa0329870:CDS | 45.0% | |
| ! | GTGATGGTTTCTGGAAAGGA+TGG | + | chr2_4:43822890-43822909 | Msa0329870:CDS | 45.0% |
| GGCACACCCTTATTGATCAA+TGG | - | chr2_4:43823225-43823244 | None:intergenic | 45.0% | |
| ! | ATCAATAAGGGTGTGCCAAG+TGG | + | chr2_4:43823228-43823247 | Msa0329870:intron | 45.0% |
| ACAAACAACACGTGAGAGAG+AGG | + | chr2_4:43823287-43823306 | Msa0329870:intron | 45.0% | |
| GGAAGAAGAAGAAGAAGGTG+TGG | - | chr2_4:43823951-43823970 | None:intergenic | 45.0% | |
| AGGGAGGAAGAAGAAGAAGA+AGG | - | chr2_4:43823946-43823965 | None:intergenic | 45.0% | |
| CTGAAGTTATCGACAGTTGG+TGG | + | chr2_4:43823789-43823808 | Msa0329870:intron | 45.0% | |
| !! | AGTTGGTGGAAAATTGACGG+CGG | + | chr2_4:43823803-43823822 | Msa0329870:intron | 45.0% |
| !! | CGGATGGTGGAAAATTGAAG+AGG | + | chr2_4:43823823-43823842 | Msa0329870:intron | 45.0% |
| GAAGAAGAAAAGGGTTTGGC+AGG | + | chr2_4:43823852-43823871 | Msa0329870:intron | 45.0% | |
| ATCATCAGCTTCTCTTCCAC+CGG | - | chr2_4:43823896-43823915 | None:intergenic | 45.0% | |
| ! | GGAAGAGAAGCTGATGATGA+TGG | + | chr2_4:43823898-43823917 | Msa0329870:intron | 45.0% |
| !! | AGAGAAGCTGATGATGATGG+TGG | + | chr2_4:43823901-43823920 | Msa0329870:intron | 45.0% |
| !! | GAGAAGCTGATGATGATGGT+GGG | + | chr2_4:43823902-43823921 | Msa0329870:intron | 45.0% |
| AGGGAGGAAGAAGAAGAAGA+AGG | + | chr2_4:43823946-43823965 | Msa0329870:intron | 45.0% | |
| GAGGAAGAAGAAGAAGAAGG+TGG | + | chr2_4:43823949-43823968 | Msa0329870:intron | 45.0% | |
| AGTTACTGCATATCCAGCAG+TGG | + | chr2_4:43822771-43822790 | Msa0329870:intron | 45.0% | |
| GTTACTGCATATCCAGCAGT+GGG | + | chr2_4:43822772-43822791 | Msa0329870:intron | 45.0% | |
| TGTTGTGGATCATCCTTGGA+GGG | - | chr2_4:43822841-43822860 | None:intergenic | 45.0% | |
| TTGTTGTGGATCATCCTTGG+AGG | - | chr2_4:43822842-43822861 | None:intergenic | 45.0% | |
| AAAACAACTAGCAGGGGTGA+TGG | + | chr2_4:43822874-43822893 | Msa0329870:CDS | 45.0% | |
| ! | GTGATGGTTTCTGGAAAGGA+TGG | + | chr2_4:43822890-43822909 | Msa0329870:CDS | 45.0% |
| GGCACACCCTTATTGATCAA+TGG | - | chr2_4:43823225-43823244 | None:intergenic | 45.0% | |
| ! | ATCAATAAGGGTGTGCCAAG+TGG | + | chr2_4:43823228-43823247 | Msa0329870:intron | 45.0% |
| ACAAACAACACGTGAGAGAG+AGG | + | chr2_4:43823287-43823306 | Msa0329870:intron | 45.0% | |
| GGAAGAAGAAGAAGAAGGTG+TGG | - | chr2_4:43823951-43823970 | None:intergenic | 45.0% | |
| AGGGAGGAAGAAGAAGAAGA+AGG | - | chr2_4:43823946-43823965 | None:intergenic | 45.0% | |
| CTGAAGTTATCGACAGTTGG+TGG | + | chr2_4:43823789-43823808 | Msa0329870:intron | 45.0% | |
| !! | AGTTGGTGGAAAATTGACGG+CGG | + | chr2_4:43823803-43823822 | Msa0329870:intron | 45.0% |
| !! | CGGATGGTGGAAAATTGAAG+AGG | + | chr2_4:43823823-43823842 | Msa0329870:intron | 45.0% |
| GAAGAAGAAAAGGGTTTGGC+AGG | + | chr2_4:43823852-43823871 | Msa0329870:intron | 45.0% | |
| ATCATCAGCTTCTCTTCCAC+CGG | - | chr2_4:43823896-43823915 | None:intergenic | 45.0% | |
| ! | GGAAGAGAAGCTGATGATGA+TGG | + | chr2_4:43823898-43823917 | Msa0329870:intron | 45.0% |
| !! | AGAGAAGCTGATGATGATGG+TGG | + | chr2_4:43823901-43823920 | Msa0329870:intron | 45.0% |
| !! | GAGAAGCTGATGATGATGGT+GGG | + | chr2_4:43823902-43823921 | Msa0329870:intron | 45.0% |
| AGGGAGGAAGAAGAAGAAGA+AGG | + | chr2_4:43823946-43823965 | Msa0329870:intron | 45.0% | |
| GAGGAAGAAGAAGAAGAAGG+TGG | + | chr2_4:43823949-43823968 | Msa0329870:intron | 45.0% | |
| !!! | TCTTTTTTTTTTTAAAAAAA+AGG | - | chr2_4:43823258-43823277 | None:intergenic | 5.0% |
| !!! | TCTTTTTTTTTTTAAAAAAA+AGG | - | chr2_4:43823258-43823277 | None:intergenic | 5.0% |
| TTGGAGGGATAACCCATAGG+TGG | - | chr2_4:43822826-43822845 | None:intergenic | 50.0% | |
| ! | ACCTATGGGTTATCCCTCCA+AGG | + | chr2_4:43822825-43822844 | Msa0329870:CDS | 50.0% |
| TCCTTGGAGGGATAACCCAT+AGG | - | chr2_4:43822829-43822848 | None:intergenic | 50.0% | |
| ! | AGGGGTGATGGTTTCTGGAA+AGG | + | chr2_4:43822886-43822905 | Msa0329870:CDS | 50.0% |
| AAAAGGGTTTGGCAGGTCGA+CGG | + | chr2_4:43823859-43823878 | Msa0329870:intron | 50.0% | |
| !! | AAGCTGATGATGATGGTGGG+TGG | + | chr2_4:43823905-43823924 | Msa0329870:intron | 50.0% |
| !! | AGCTGATGATGATGGTGGGT+GGG | + | chr2_4:43823906-43823925 | Msa0329870:intron | 50.0% |
| GCAAACAACACGTGAGAGAG+AGG | - | chr2_4:43823995-43824014 | None:intergenic | 50.0% | |
| ! | ACCAATAAGGGTGTGCCAAG+TGG | - | chr2_4:43824047-43824066 | None:intergenic | 50.0% |
| GGCACACCCTTATTGGTCAA+TGG | + | chr2_4:43824050-43824069 | Msa0329870:intron | 50.0% | |
| TTGGAGGGATAACCCATAGG+TGG | - | chr2_4:43822826-43822845 | None:intergenic | 50.0% | |
| ! | ACCTATGGGTTATCCCTCCA+AGG | + | chr2_4:43822825-43822844 | Msa0329870:CDS | 50.0% |
| TCCTTGGAGGGATAACCCAT+AGG | - | chr2_4:43822829-43822848 | None:intergenic | 50.0% | |
| ! | AGGGGTGATGGTTTCTGGAA+AGG | + | chr2_4:43822886-43822905 | Msa0329870:CDS | 50.0% |
| AAAAGGGTTTGGCAGGTCGA+CGG | + | chr2_4:43823859-43823878 | Msa0329870:intron | 50.0% | |
| !! | AAGCTGATGATGATGGTGGG+TGG | + | chr2_4:43823905-43823924 | Msa0329870:intron | 50.0% |
| !! | AGCTGATGATGATGGTGGGT+GGG | + | chr2_4:43823906-43823925 | Msa0329870:intron | 50.0% |
| GCAAACAACACGTGAGAGAG+AGG | - | chr2_4:43823995-43824014 | None:intergenic | 50.0% | |
| ! | ACCAATAAGGGTGTGCCAAG+TGG | - | chr2_4:43824047-43824066 | None:intergenic | 50.0% |
| GGCACACCCTTATTGGTCAA+TGG | + | chr2_4:43824050-43824069 | Msa0329870:intron | 50.0% | |
| !! | GTGGTGGTGGAACAGCTTGA+GGG | - | chr2_4:43822807-43822826 | None:intergenic | 55.0% |
| AGCTGTTCCACCACCACCTA+TGG | + | chr2_4:43822810-43822829 | Msa0329870:CDS | 55.0% | |
| GCTGTTCCACCACCACCTAT+GGG | + | chr2_4:43822811-43822830 | Msa0329870:CDS | 55.0% | |
| ! | GGATAACCCATAGGTGGTGG+TGG | - | chr2_4:43822820-43822839 | None:intergenic | 55.0% |
| GAGGGATAACCCATAGGTGG+TGG | - | chr2_4:43822823-43822842 | None:intergenic | 55.0% | |
| ! | CTAGCAGGGGTGATGGTTTC+TGG | + | chr2_4:43822881-43822900 | Msa0329870:CDS | 55.0% |
| GGTGGAAAATTGACGGCGGA+TGG | + | chr2_4:43823807-43823826 | Msa0329870:intron | 55.0% | |
| GGAAAATTGACGGCGGATGG+TGG | + | chr2_4:43823810-43823829 | Msa0329870:intron | 55.0% | |
| GCCACTTGGCACACCCTTAT+TGG | + | chr2_4:43824043-43824062 | Msa0329870:intron | 55.0% | |
| CGATCAGAGGCAACAGTCCA+GGG | - | chr2_4:43824308-43824327 | None:intergenic | 55.0% | |
| TCGATCAGAGGCAACAGTCC+AGG | - | chr2_4:43824309-43824328 | None:intergenic | 55.0% | |
| !! | GTGGTGGTGGAACAGCTTGA+GGG | - | chr2_4:43822807-43822826 | None:intergenic | 55.0% |
| AGCTGTTCCACCACCACCTA+TGG | + | chr2_4:43822810-43822829 | Msa0329870:CDS | 55.0% | |
| GCTGTTCCACCACCACCTAT+GGG | + | chr2_4:43822811-43822830 | Msa0329870:CDS | 55.0% | |
| ! | GGATAACCCATAGGTGGTGG+TGG | - | chr2_4:43822820-43822839 | None:intergenic | 55.0% |
| GAGGGATAACCCATAGGTGG+TGG | - | chr2_4:43822823-43822842 | None:intergenic | 55.0% | |
| ! | CTAGCAGGGGTGATGGTTTC+TGG | + | chr2_4:43822881-43822900 | Msa0329870:CDS | 55.0% |
| GGTGGAAAATTGACGGCGGA+TGG | + | chr2_4:43823807-43823826 | Msa0329870:intron | 55.0% | |
| GGAAAATTGACGGCGGATGG+TGG | + | chr2_4:43823810-43823829 | Msa0329870:intron | 55.0% | |
| GCCACTTGGCACACCCTTAT+TGG | + | chr2_4:43824043-43824062 | Msa0329870:intron | 55.0% | |
| CGATCAGAGGCAACAGTCCA+GGG | - | chr2_4:43824308-43824327 | None:intergenic | 55.0% | |
| TCGATCAGAGGCAACAGTCC+AGG | - | chr2_4:43824309-43824328 | None:intergenic | 55.0% | |
| GGGTTGTTCTGACCCACTGC+TGG | - | chr2_4:43822787-43822806 | None:intergenic | 60.0% | |
| !! | GGTGGTGGTGGAACAGCTTG+AGG | - | chr2_4:43822808-43822827 | None:intergenic | 60.0% |
| GGGTTGTTCTGACCCACTGC+TGG | - | chr2_4:43822787-43822806 | None:intergenic | 60.0% | |
| !! | GGTGGTGGTGGAACAGCTTG+AGG | - | chr2_4:43822808-43822827 | None:intergenic | 60.0% |
| AGGGTTTGGCAGGTCGACGG+CGG | + | chr2_4:43823862-43823881 | Msa0329870:intron | 65.0% | |
| AGGGTTTGGCAGGTCGACGG+CGG | + | chr2_4:43823862-43823881 | Msa0329870:intron | 65.0% | |
| TGGCAGGTCGACGGCGGCAG+AGG | + | chr2_4:43823868-43823887 | Msa0329870:intron | 75.0% | |
| TGGCAGGTCGACGGCGGCAG+AGG | + | chr2_4:43823868-43823887 | Msa0329870:intron | 75.0% | |
| !! | GTCGACGGCGGCAGAGGCGC+CGG | + | chr2_4:43823874-43823893 | Msa0329870:intron | 80.0% |
| !! | GTCGACGGCGGCAGAGGCGC+CGG | + | chr2_4:43823874-43823893 | Msa0329870:intron | 80.0% |
| !!! | GACGGCGGCAGAGGCGCCGG+TGG | + | chr2_4:43823877-43823896 | Msa0329870:intron | 85.0% |
| !!! | GACGGCGGCAGAGGCGCCGG+TGG | + | chr2_4:43823877-43823896 | Msa0329870:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 43822435 | 43824527 | 43822435 | ID=Msa0329870;Name=Msa0329870 |
| chr2_4 | mRNA | 43822435 | 43824527 | 43822435 | ID=Msa0329870-mRNA-1;Parent=Msa0329870;Name=Msa0329870-mRNA-1;_AED=0.35;_eAED=0.35;_QI=104|1|1|1|0.5|0.66|3|203|72 |
| chr2_4 | exon | 43822435 | 43822572 | 43822435 | ID=Msa0329870-mRNA-1:exon:13359;Parent=Msa0329870-mRNA-1 |
| chr2_4 | exon | 43822773 | 43822911 | 43822773 | ID=Msa0329870-mRNA-1:exon:13360;Parent=Msa0329870-mRNA-1 |
| chr2_4 | exon | 43824279 | 43824527 | 43824279 | ID=Msa0329870-mRNA-1:exon:13361;Parent=Msa0329870-mRNA-1 |
| chr2_4 | five_prime_UTR | 43822435 | 43822538 | 43822435 | ID=Msa0329870-mRNA-1:five_prime_utr;Parent=Msa0329870-mRNA-1 |
| chr2_4 | CDS | 43822539 | 43822572 | 43822539 | ID=Msa0329870-mRNA-1:cds;Parent=Msa0329870-mRNA-1 |
| chr2_4 | CDS | 43822773 | 43822911 | 43822773 | ID=Msa0329870-mRNA-1:cds;Parent=Msa0329870-mRNA-1 |
| chr2_4 | CDS | 43824279 | 43824324 | 43824279 | ID=Msa0329870-mRNA-1:cds;Parent=Msa0329870-mRNA-1 |
| chr2_4 | three_prime_UTR | 43824325 | 43824527 | 43824325 | ID=Msa0329870-mRNA-1:three_prime_utr;Parent=Msa0329870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
