AlfalfaGEDB | Msa0659800

M. sativa cultivar zhongmu-4 / Msa0659800

KEGG: -
GO: -
PFAM: PF01823.22

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0659800	XP_003630391.1	98.664	599	8	0	85	683	1	599	0.0	1229

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0659800	sp\|Q9STW5\|MACP2_ARATH	64.992	597	197	8	93	682	10	601	0.0	782

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0659800	G7LFS3	98.664	599	8	0	85	683	1	599	0.0	1229

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0030730	Msa0659800	-0.810429	1.157965e-50	-8.615850e-47
Msa0031720	Msa0659800	-0.802080	6.647164e-49	-8.615850e-47
Msa0038350	Msa0659800	0.875650	2.606731e-68	-8.615850e-47
Msa0040550	Msa0659800	0.810390	1.180474e-50	-8.615850e-47
Msa0044810	Msa0659800	-0.815581	8.590089e-52	-8.615850e-47
Msa0048020	Msa0659800	-0.811391	7.167718e-51	-8.615850e-47
Msa0059960	Msa0659800	0.810780	9.720498e-51	-8.615850e-47
Msa0060350	Msa0659800	-0.804494	2.102365e-49	-8.615850e-47
Msa0063580	Msa0659800	-0.823400	1.414048e-53	-8.615850e-47
Msa0073820	Msa0659800	-0.845143	4.879010e-59	-8.615850e-47

Showing 1 to 10 of 172 entries

Previous1 2 3 4 5…18Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0659800	MtrunA17_Chr8g0385121	98.664	599	8	0	85	683	1	599	0.0	1229
Msa0659800	MtrunA17_Chr2g0277061	67.288	590	184	6	94	677	12	598	0.0	809
Msa0659800	MtrunA17_Chr4g0046841	52.167	600	266	9	92	675	20	614	0.0	595
Msa0659800	MtrunA17_Chr8g0385131	47.157	598	275	9	93	683	12	575	5.66e-177	516
Msa0659800	MtrunA17_Chr8g0391931	46.321	598	295	12	94	676	6	592	7.97e-169	496
Msa0659800	MtrunA17_Chr8g0377631	44.065	615	296	12	97	672	11	616	3.40e-168	495
Msa0659800	MtrunA17_Chr3g0122211	44.079	608	301	12	97	672	17	617	4.81e-166	490
Msa0659800	MtrunA17_Chr8g0385181	45.470	585	271	10	93	673	12	552	2.74e-165	486
Msa0659800	MtrunA17_Chr2g0284691	40.271	591	290	10	98	673	23	565	7.85e-135	408
Msa0659800	MtrunA17_Chr4g0013011	37.625	598	330	10	93	672	10	582	2.40e-128	392

Showing 1 to 10 of 17 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0659800	AT4G24290.2	64.992	597	197	8	93	682	10	601	0.0	782
Msa0659800	AT4G24290.3	64.992	597	197	8	93	682	10	601	0.0	782
Msa0659800	AT1G28380.1	50.580	603	274	10	93	678	14	609	0.0	561
Msa0659800	AT1G14780.1	42.508	614	314	12	94	672	9	618	7.82e-159	472
Msa0659800	AT1G29690.1	39.775	621	290	10	74	672	1	559	6.62e-143	429
Msa0659800	AT4G24290.1	58.788	330	124	7	93	413	10	336	2.69e-125	376

Showing 1 to 6 of 6 entries

Previous1Next

Find 183 sgRNAs with CRISPR-Local

Find 542 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTCAGCCACAATGAG+TGG	0.599869	4_3:-70222626	Msa0659800:CDS
AAAGTACCTTGCCAGTGCAG+CGG	0.617410	4_3:+70224472	None:intergenic
AAATATTTACCTCTGTTTCA+CGG	0.491033	4_3:+70223038	None:intergenic
AAATCTATCAATTGTGATAA+AGG	0.315125	4_3:-70225545	Msa0659800:CDS
AACAAGCTGTTCCTTCATCA+TGG	0.471704	4_3:-70224499	Msa0659800:CDS
AACAGGCCTTCGATTGTATT+TGG	0.219951	4_3:-70221025	Msa0659800:CDS
AACCAGGAGGTGTCACTGTC+TGG	0.436200	4_3:-70224680	Msa0659800:CDS
AACTCTGCTTTATACCCTGG+AGG	0.559576	4_3:-70220583	Msa0659800:CDS
AACTTCTTGTAGGTCGATGT+AGG	0.574111	4_3:-70221060	Msa0659800:intron
AAGTACCTTGCCAGTGCAGC+GGG	0.471772	4_3:+70224473	None:intergenic

Showing 1 to 10 of 183 entries

Previous1 2 3 4 5…19Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGTGTGTTCGTAATTTAAGT+TGG	-	chr4_3:70220149-70220168	Msa0659800:three_prime_UTR	30.0%
TGGCGAGCATAAATTATTTA+AGG	-	chr4_3:70220169-70220188	Msa0659800:three_prime_UTR	30.0%
CTCGCCATTAAGAAAAAATA+TGG	+	chr4_3:70220261-70220280	None:intergenic	30.0%
CCGTTAATTTATGCAATGAT+GGG	+	chr4_3:70220293-70220312	None:intergenic	30.0%
CCCATCATTGCATAAATTAA+CGG	-	chr4_3:70220290-70220309	Msa0659800:three_prime_UTR	30.0%
ACCGTTAATTTATGCAATGA+TGG	+	chr4_3:70220294-70220313	None:intergenic	30.0%
ATCATTGCATAAATTAACGG+TGG	-	chr4_3:70220293-70220312	Msa0659800:three_prime_UTR	30.0%
ACCACCGTTAAGAAAAAATA+TGG	-	chr4_3:70220638-70220657	Msa0659800:CDS	30.0%
TGTGTGTTCCTAATTTAAGT+TGG	+	chr4_3:70220778-70220797	None:intergenic	30.0%
CCATTTCAAATGAAGAACAA+GGG	-	chr4_3:70220867-70220886	Msa0659800:CDS	30.0%

Showing 1 to 10 of 542 entries

Previous1 2 3 4 5…55Next

Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	70220076	70228097	70220076	ID=Msa0659800;Name=Msa0659800
chr4_3	mRNA	70220076	70228097	70220076	ID=Msa0659800-mRNA-1;Parent=Msa0659800;Name=Msa0659800-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0.85\|0.75\|0.87\|1\|1\|8\|308\|684
chr4_3	exon	70220076	70221070	70220076	ID=Msa0659800-mRNA-1:exon:20788;Parent=Msa0659800-mRNA-1
chr4_3	exon	70221639	70221808	70221639	ID=Msa0659800-mRNA-1:exon:20787;Parent=Msa0659800-mRNA-1
chr4_3	exon	70222505	70222697	70222505	ID=Msa0659800-mRNA-1:exon:20786;Parent=Msa0659800-mRNA-1
chr4_3	exon	70223048	70223110	70223048	ID=Msa0659800-mRNA-1:exon:20785;Parent=Msa0659800-mRNA-1
chr4_3	exon	70223794	70223995	70223794	ID=Msa0659800-mRNA-1:exon:20784;Parent=Msa0659800-mRNA-1
chr4_3	exon	70224479	70224717	70224479	ID=Msa0659800-mRNA-1:exon:20783;Parent=Msa0659800-mRNA-1
chr4_3	exon	70225502	70225928	70225502	ID=Msa0659800-mRNA-1:exon:20782;Parent=Msa0659800-mRNA-1
chr4_3	exon	70228024	70228097	70228024	ID=Msa0659800-mRNA-1:exon:20781;Parent=Msa0659800-mRNA-1
chr4_3	CDS	70228024	70228097	70228024	ID=Msa0659800-mRNA-1:cds;Parent=Msa0659800-mRNA-1
chr4_3	CDS	70225502	70225928	70225502	ID=Msa0659800-mRNA-1:cds;Parent=Msa0659800-mRNA-1
chr4_3	CDS	70224479	70224717	70224479	ID=Msa0659800-mRNA-1:cds;Parent=Msa0659800-mRNA-1
chr4_3	CDS	70223794	70223995	70223794	ID=Msa0659800-mRNA-1:cds;Parent=Msa0659800-mRNA-1
chr4_3	CDS	70223048	70223110	70223048	ID=Msa0659800-mRNA-1:cds;Parent=Msa0659800-mRNA-1
chr4_3	CDS	70222505	70222697	70222505	ID=Msa0659800-mRNA-1:cds;Parent=Msa0659800-mRNA-1
chr4_3	CDS	70221639	70221808	70221639	ID=Msa0659800-mRNA-1:cds;Parent=Msa0659800-mRNA-1
chr4_3	CDS	70220384	70221070	70220384	ID=Msa0659800-mRNA-1:cds;Parent=Msa0659800-mRNA-1
chr4_3	three_prime_UTR	70220076	70220383	70220076	ID=Msa0659800-mRNA-1:three_prime_utr;Parent=Msa0659800-mRNA-1

Gene Sequence

>Msa0659800

ATGGCGAGCATGACAATTTTTCAACCTTCCTCTGCAAGCTTGCAGGCTTTCTCAGACTTTCTCTGTGCAACTCTCATTTCTTTGACTATTGACAAACCTAAACATCCTTGGACGCTTTCTTCTCTTCTTCTTCTTCTTATTATTCTTTTGCTTTTCCCTTTGGTTTTTGCTTTCATTAATACAACAACTACCACTTCTTATTTAGTTGATGAACAATTGTTGAAGAAGAAGAAGAAGAAGAATAACAAGAAGATGTCCAGTAAGAAGAAAGTGCTGTCCGTTGAAGATGTGATTAAATCCGTTGGATTAGGTTACGATCTCACCAACGATCTCAGACTCAAATTCTGCAAATATGATTCCAAATTGATCGCTATTGACCACGACAATCTTCGTACTGTTGAGCTTCCTGGTCGTGTTTCAATTCCCAATGTTCCCAAATCTATCAATTGTGATAAAGGCGACCGTATGCGATTGTGTTCTGATGTTCTTTCTTTTCAGCAGATGTCAGAGCAGTTCAACCAGGAGGTGTCACTGTCTGGTAAGATTCCAACAGGCCATTTCAATTCTGCGTTTCAGTTTTCAGGAGTTTGGCAAAGAGATGCTGCAAATACCAAGAGTCTTGCTTTCGATGGCGTCTCCATTACACTCTACAACATAGCACTTGATAAAACACACGTAGTTCTCAGTGATCATGTCAAACAAGCTGTTCCTTCATCATGGGATCCCGCTGCACTGGCAAGGTTCATTGAGAAATATGGAACCCATGCTGTAGTTGGGGTGAAAATAGGGGGAACCGATATAATATATGCAAAGCAGCAATATTCATCTCCTCTCCAACCTTCTGATGTACAGAAAAAATTGAAGGACATGGCAGATGAATTATTCAGGGGCCAGGCTGGACAAAATAACGCTAATGATGGGGCATTTAATTCAAAAGAAAAGTTTATGAGGGACAATGGACTAGGATTCCTGGACATTCAAGCTCAATCCTACCGTGAAACAGAGGTGCAGGATATAAAGTTTATGTGCAAGAGGAAAGGTGGAAATGGGAAACAAAATCTCAGCCACAATGAGTGGTGTCAAACTGTTTTGTCTCAACCTGATGTAATATCAATGTCATTCATACCAATTACATCTCTACTTGGTGGAATAAATGGGAGTGGATATTTAACTCATGCCATAAATCTCTATTTACGATATAAACCAGCAATTGAAGAACTGCATCAATTTTTGGAGTTTCAGCTTCCAAGGCAATGGGCCCCTGTATTTGGTGAGCTTGCCCTTGGTCCTGATAGGAAGAAGTCGCAGAGTTCTTCATCTTTACAGTTCAGTTTCATGGGTCCTAAGCTCTATGTAAACACATCACCGGTCGATGTAGGAATGAAGCCTGTAACAGGCCTTCGATTGTATTTGGAAGGAAAGAAAAGTAATTGTTTGGCGATCCATTTACAGCACCTCTCCTCCCTCCCTAAGACATTCCAACTGGAGGACAAGACTAATCGAAATGTATCAGATGCCTCTTCAGAACGTAAATATTATGAAAAGGTCCAGTGGAAGAGCTTCTCTCATATTTGCACGGCTCCTGTTGAATCCTACGATGACAACGCTGTTGTGACTGGTGCTCACTTTGAAGTGGGAGAAACTGGTCTGAAGAAGGTTCTCTTCTTAAGACTTCATTTCTGTAAAGTTGCCAATGCATCCCGTGTGAGAGCGCCGGAATGGGATGGTTCTCCTGGCTTGACTCAGAAATCTGGAATGATCTCAACTTTTATCAGCACTCGGTTTTCAGGTCCACAAAAGCTGCCGCCACCACAGCCATCGGACGTAAATGTGAACTCTGCTTTATACCCTGGAGGGCCTCCTGTGCCTGCTCAGGCACCTAAACTTCTGAAGTTTGTTGACACAACAGAAATGACTAGAGGACCACAAGATTTGCCTGGTTACTGGGTTGTGTCGGGGGCAAGGCTTTATGTCGAGAAGGGTAAAATATCACTTAAAGTAAAATATTCTCTTTTAACCGTGATTTTACCGGATGAAGAGACAGAAAGTTATTGA

Protein sequence

>Msa0659800

MASMTIFQPSSASLQAFSDFLCATLISLTIDKPKHPWTLSSLLLLLIILLLFPLVFAFINTTTTTSYLVDEQLLKKKKKKNNKKMSSKKKVLSVEDVIKSVGLGYDLTNDLRLKFCKYDSKLIAIDHDNLRTVELPGRVSIPNVPKSINCDKGDRMRLCSDVLSFQQMSEQFNQEVSLSGKIPTGHFNSAFQFSGVWQRDAANTKSLAFDGVSITLYNIALDKTHVVLSDHVKQAVPSSWDPAALARFIEKYGTHAVVGVKIGGTDIIYAKQQYSSPLQPSDVQKKLKDMADELFRGQAGQNNANDGAFNSKEKFMRDNGLGFLDIQAQSYRETEVQDIKFMCKRKGGNGKQNLSHNEWCQTVLSQPDVISMSFIPITSLLGGINGSGYLTHAINLYLRYKPAIEELHQFLEFQLPRQWAPVFGELALGPDRKKSQSSSSLQFSFMGPKLYVNTSPVDVGMKPVTGLRLYLEGKKSNCLAIHLQHLSSLPKTFQLEDKTNRNVSDASSERKYYEKVQWKSFSHICTAPVESYDDNAVVTGAHFEVGETGLKKVLFLRLHFCKVANASRVRAPEWDGSPGLTQKSGMISTFISTRFSGPQKLPPPQPSDVNVNSALYPGGPPVPAQAPKLLKFVDTTEMTRGPQDLPGYWVVSGARLYVEKGKISLKVKYSLLTVILPDEETESY*