AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0385150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385150 MtrunA17_Chr3g0142501 99.622 529 2 0 1 529 1 529 0.0 1095
Msa0385150 MtrunA17_Chr8g0372031 62.330 515 191 1 14 528 23 534 0.0 638
Msa0385150 MtrunA17_Chr5g0439311 44.798 471 246 9 58 519 32 497 5.18e-138 409
Msa0385150 MtrunA17_Chr4g0038131 43.154 482 255 7 58 528 29 502 3.11e-136 408
Msa0385150 MtrunA17_Chr8g0388051 46.482 469 237 10 58 518 29 491 2.21e-135 406
Msa0385150 MtrunA17_Chr3g0119371 43.524 471 252 9 58 519 41 506 6.17e-130 389
Msa0385150 MtrunA17_Chr1g0164201 44.563 469 239 10 58 518 26 481 1.10e-126 379
Msa0385150 MtrunA17_Chr5g0397201 43.644 472 245 7 58 523 41 497 5.32e-125 375
Msa0385150 MtrunA17_Chr3g0145261 42.827 474 250 9 56 519 23 485 2.52e-122 368
Msa0385150 MtrunA17_Chr3g0119821 42.004 469 253 8 56 516 34 491 7.87e-122 367
Msa0385150 MtrunA17_Chr3g0086311 41.453 468 252 7 58 520 31 481 9.00e-119 358
Msa0385150 MtrunA17_Chr1g0195271 41.079 482 266 9 51 525 33 503 3.45e-115 350
Msa0385150 MtrunA17_Chr2g0291461 41.698 530 267 14 14 518 77 589 2.97e-114 351
Msa0385150 MtrunA17_Chr5g0444721 39.219 538 242 14 58 518 35 564 1.53e-113 348
Msa0385150 MtrunA17_Chr8g0391391 41.300 477 247 11 56 516 29 488 3.11e-113 345
Msa0385150 MtrunA17_Chr3g0080171 41.880 468 248 10 58 516 26 478 4.44e-112 341
Msa0385150 MtrunA17_Chr4g0018301 40.343 466 255 8 58 516 46 495 3.67e-110 337
Msa0385150 MtrunA17_Chr3g0120661 39.212 533 285 15 14 524 82 597 5.32e-106 330
Msa0385150 MtrunA17_Chr5g0397181 40.686 408 222 5 117 519 1 393 1.95e-104 318
Msa0385150 MtrunA17_Chr4g0018361 38.703 478 260 12 56 516 26 487 1.11e-101 315
Msa0385150 MtrunA17_Chr3g0126111 36.981 530 282 18 18 519 76 581 2.95e-95 301
Msa0385150 MtrunA17_Chr3g0136381 40.385 364 199 5 58 420 31 377 1.85e-91 286
Msa0385150 MtrunA17_Chr4g0018341 39.024 287 155 7 236 516 2 274 1.35e-58 196
Msa0385150 MtrunA17_Chr4g0018351 43.085 188 104 2 53 239 26 211 2.81e-44 155
Msa0385150 MtrunA17_Chr1g0164181 43.889 180 97 1 98 273 3 182 4.85e-41 150
Msa0385150 MtrunA17_Chr1g0164181 40.476 168 93 4 354 516 164 329 5.71e-35 134
Msa0385150 MtrunA17_Chr4g0072811 44.586 157 86 1 373 528 19 175 2.80e-38 139
Msa0385150 MtrunA17_Chr7g0269571 35.227 176 98 3 366 526 43 217 2.35e-31 121
Msa0385150 MtrunA17_Chr3g0136371 47.778 90 43 2 421 506 2 91 3.76e-21 88.6
Msa0385150 MtrunA17_Chr4g0022271 37.405 131 71 4 375 500 29 153 6.09e-20 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385150 AT1G19940.2 68.371 528 154 4 1 528 1 515 0.0 709
Msa0385150 AT1G19940.1 68.371 528 154 4 1 528 1 515 0.0 709
Msa0385150 AT1G75680.1 69.187 529 157 5 1 528 1 524 0.0 708
Msa0385150 AT1G19940.3 65.952 420 130 4 1 420 1 407 0.0 546
Msa0385150 AT4G11050.2 45.798 476 244 9 58 525 27 496 1.65e-139 414
Msa0385150 AT4G11050.3 46.008 476 243 10 58 525 27 496 9.95e-139 415
Msa0385150 AT4G11050.1 46.008 476 243 10 58 525 27 496 1.11e-138 415
Msa0385150 AT1G64390.1 44.676 479 251 9 58 528 26 498 1.54e-136 409
Msa0385150 AT2G32990.1 43.644 472 244 10 58 516 40 502 3.82e-131 392
Msa0385150 AT2G44540.1 44.397 473 247 7 52 518 28 490 1.71e-128 384
Msa0385150 AT2G44550.1 45.435 471 238 9 53 516 29 487 3.03e-128 383
Msa0385150 AT2G44560.1 45.032 473 244 8 52 518 28 490 4.74e-126 378
Msa0385150 AT1G48930.1 46.055 469 235 7 58 516 31 491 4.04e-125 380
Msa0385150 AT2G44570.1 42.887 471 252 9 55 518 31 491 3.85e-122 368
Msa0385150 AT4G23560.1 42.463 471 251 6 57 522 23 478 2.19e-119 360
Msa0385150 AT1G71380.1 42.706 473 248 9 52 516 19 476 1.15e-118 358
Msa0385150 AT4G02290.1 41.667 468 255 9 56 516 51 507 1.15e-118 360
Msa0385150 AT1G02800.1 41.983 474 255 10 55 521 41 501 6.30e-118 357
Msa0385150 AT3G43860.2 41.845 466 249 7 58 518 35 483 3.12e-117 355
Msa0385150 AT3G43860.1 41.845 466 249 7 58 518 35 483 3.12e-117 355
Msa0385150 AT1G22880.1 42.616 474 249 9 58 523 25 483 5.19e-117 354
Msa0385150 AT4G09740.1 42.340 470 251 7 58 522 24 478 6.86e-117 353
Msa0385150 AT4G39010.1 40.764 471 259 9 56 516 28 488 6.66e-115 349
Msa0385150 AT1G23210.1 40.000 470 254 9 58 515 29 482 5.90e-114 347
Msa0385150 AT1G70710.1 40.127 471 252 9 58 515 29 482 6.75e-114 347
Msa0385150 AT4G39000.1 39.496 476 268 9 51 516 19 484 6.04e-111 339
Msa0385150 AT5G49720.1 40.566 530 273 14 14 518 74 586 3.83e-108 336
Msa0385150 AT4G24260.1 43.149 489 244 14 58 522 109 587 9.64e-105 327
Msa0385150 AT4G38990.2 37.654 486 268 12 51 516 17 487 1.92e-100 312
Msa0385150 AT1G65610.1 36.484 529 298 13 14 521 82 593 3.20e-100 315
Msa0385150 AT1G22880.2 41.546 414 220 8 117 523 1 399 3.65e-99 305
Msa0385150 AT4G02290.2 40.148 406 226 8 117 516 1 395 1.44e-95 296
Msa0385150 AT2G44570.2 41.514 383 212 7 55 435 31 403 6.58e-89 279
Msa0385150 AT4G39010.2 39.516 372 209 8 56 421 28 389 9.00e-83 263
Msa0385150 AT1G22880.3 44.728 313 155 7 58 366 25 323 8.85e-71 230
Msa0385150 AT4G24260.3 42.119 387 193 13 58 420 109 488 8.10e-70 232
Msa0385150 AT4G24260.2 44.164 317 150 11 58 352 109 420 1.67e-63 214
Msa0385150 AT4G38990.1 36.311 347 183 7 51 392 17 330 1.47e-59 201

Find 183 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAACAGAGTTTGGGGTTT+TGG 0.147944 3_1:+88672780 None:intergenic
GTTTATTGCGTTTGTGATTC+TGG 0.168400 3_1:-88672685 Msa0385150:CDS
TATTATAACTCAACTGGATA+TGG 0.212670 3_1:-88671487 Msa0385150:CDS
TAATAACACATTTCTTATTT+AGG 0.225442 3_1:-88672896 Msa0385150:five_prime_UTR
TTTATATAGATGGTCTGATA+TGG 0.236900 3_1:-88670529 Msa0385150:intron
GAGCATAGTCTTCTCCATTT+TGG 0.237012 3_1:+88671389 None:intergenic
ACAACGATAATGTCTATATT+TGG 0.241703 3_1:+88672929 None:intergenic
ATGAGACTTACATTGATTCT+AGG 0.242483 3_1:-88669759 Msa0385150:CDS
GTACTTCCTTGTAAAATATA+TGG 0.249625 3_1:-88669391 Msa0385150:three_prime_UTR
TCCCCATTTCTCGCCGCAAC+CGG 0.259382 3_1:-88673095 Msa0385150:five_prime_UTR
TTGAGGGGTATAATGGTAAA+AGG 0.262319 3_1:+88673267 None:intergenic
GGAGAAGACTATGCTCAATT+TGG 0.277714 3_1:-88671382 Msa0385150:CDS
TAATGTCTATATTTGGAAAT+AGG 0.284072 3_1:+88672936 None:intergenic
CAAATGCAGAAAACAGAGTT+TGG 0.299311 3_1:+88672772 None:intergenic
GGAGAATGTTCTGTATATTC+AGG 0.309453 3_1:-88671896 Msa0385150:intron
TCGTGGGCAATTCTAGAATA+TGG 0.312428 3_1:-88672006 Msa0385150:CDS
AGCAATGGCATCAGCATCTT+TGG 0.319777 3_1:-88671629 Msa0385150:CDS
AGTTAGCAATGTATTTGTTT+GGG 0.320297 3_1:-88672855 Msa0385150:five_prime_UTR
GGAGGACCGGGAACCGGTTC+GGG 0.321906 3_1:+88672597 None:intergenic
TTTGTGGCTGTTGGAGAGTC+TGG 0.335910 3_1:+88670884 None:intergenic
GAGAGGGGATTCGGCTCTTA+AGG 0.338315 3_1:-88672127 Msa0385150:CDS
CAGTATGTGACTGGCCAAAA+TGG 0.350134 3_1:-88671403 Msa0385150:CDS
GCCGGGGATCACATGAAGTT+TGG 0.352977 3_1:-88672060 Msa0385150:CDS
CTTTCAAGTTCATATGGTTC+CGG 0.354604 3_1:-88670956 Msa0385150:CDS
GACCCGGTTGCGGCGAGAAA+TGG 0.355828 3_1:+88673092 None:intergenic
GAGTTAGCAATGTATTTGTT+TGG 0.360242 3_1:-88672856 Msa0385150:five_prime_UTR
GATAAACCCGAACCGGTTCC+CGG 0.365719 3_1:-88672603 Msa0385150:CDS
GTGTTGGAGGAAAATGGATA+TGG 0.365793 3_1:+88673060 None:intergenic
TTATAATATGTCGCAACTTC+AGG 0.368599 3_1:+88671502 None:intergenic
GGAGCTACATACTATAGTTT+AGG 0.374553 3_1:+88669636 None:intergenic
TGTCCCAACTGAACCAGGTT+GGG 0.383206 3_1:+88671356 None:intergenic
AGGAGGACCGGGAACCGGTT+CGG 0.385546 3_1:+88672596 None:intergenic
GTCGTTGTGTTGGAGGAAAA+TGG 0.386601 3_1:+88673054 None:intergenic
TTCTCATATCCAACTTCATA+AGG 0.387488 3_1:-88673217 Msa0385150:five_prime_UTR
GCTAGGTTGTTGGTTGGTGC+TGG 0.390689 3_1:-88673020 Msa0385150:five_prime_UTR
ACCCGGTTGCGGCGAGAAAT+GGG 0.395938 3_1:+88673093 None:intergenic
AAATGCAGAAAACAGAGTTT+GGG 0.396742 3_1:+88672773 None:intergenic
ATTATAACTCAACTGGATAT+GGG 0.400764 3_1:-88671486 Msa0385150:CDS
AATTGTTTGAAATCGTTAAA+CGG 0.407563 3_1:+88672992 None:intergenic
AAGGGCCTTTCAAGTTCATA+TGG 0.416309 3_1:-88670962 Msa0385150:CDS
TCCCACAATTTGTGCATCAC+AGG 0.417030 3_1:-88669900 Msa0385150:CDS
TTTCTCGCCGCAACCGGGTC+GGG 0.419432 3_1:-88673089 Msa0385150:five_prime_UTR
TCTCGTCAATGCTCATCCTT+CGG 0.427984 3_1:-88671917 Msa0385150:CDS
ACTAATAATACGTGATGATA+AGG 0.428647 3_1:+88669551 None:intergenic
AATAAGTTGGAGAGGGGATT+CGG 0.430660 3_1:-88672136 Msa0385150:CDS
AATGGATGCTGTTGGCCAAT+TGG 0.431030 3_1:-88671977 Msa0385150:CDS
TTCCAGGCTGATTACGTGTT+GGG 0.431458 3_1:-88669970 Msa0385150:intron
TTCAGCTGCAACATCTGATC+CGG 0.435202 3_1:+88671660 None:intergenic
ATCAATGGCACCAGGAGGAC+CGG 0.439759 3_1:+88672584 None:intergenic
GCGACATATTATAACTCAAC+TGG 0.441782 3_1:-88671493 Msa0385150:CDS
TGAGTGTGAACCGTGGTGTC+TGG 0.442330 3_1:-88669494 Msa0385150:three_prime_UTR
CCGAATCCCAATGTAGCTAC+TGG 0.444550 3_1:-88669808 Msa0385150:CDS
GTTGCAAGGATGGGTGGCAG+TGG 0.446186 3_1:-88669846 Msa0385150:CDS
TCTAGAATATGGAGATCAAA+TGG 0.446875 3_1:-88671995 Msa0385150:CDS
ATCTAGAGTAAGCTTCTTCA+AGG 0.446995 3_1:-88670987 Msa0385150:CDS
AGCTGAAACTGCAGCAGCAA+TGG 0.448020 3_1:-88671644 Msa0385150:CDS
CCCCATTTCTCGCCGCAACC+GGG 0.448967 3_1:-88673094 Msa0385150:five_prime_UTR
AAGTTTAGTCACCACATCTT+CGG 0.449573 3_1:-88669674 Msa0385150:CDS
AGTCATTAATTAATGTATAC+AGG 0.454381 3_1:-88669464 Msa0385150:three_prime_UTR
GCACCAGGAGGACCGGGAAC+CGG 0.455702 3_1:+88672591 None:intergenic
CATCACGTATTATTAGTGTA+TGG 0.456168 3_1:-88669545 Msa0385150:three_prime_UTR
TCGAGACTTTGCCAGATCTC+AGG 0.456961 3_1:-88670375 Msa0385150:intron
TTATATAGATGGTCTGATAT+GGG 0.457104 3_1:-88670528 Msa0385150:intron
AGTTGGGACAACAAGCTTGC+CGG 0.460646 3_1:-88671343 Msa0385150:CDS
CAACACTTGTGATCTGCAAC+AGG 0.466398 3_1:+88671742 None:intergenic
AATCTTGTGCTGGTTCCAAT+TGG 0.470000 3_1:+88671962 None:intergenic
TAGAGAACAACAAAATAAGT+TGG 0.470544 3_1:-88672149 Msa0385150:CDS
CCAGTAGCTACATTGGGATT+CGG 0.470664 3_1:+88669808 None:intergenic
CCCTGTGATGCACAAATTGT+GGG 0.472083 3_1:+88669899 None:intergenic
CTCAATTTGGAAGCCCAACC+TGG 0.472205 3_1:-88671369 Msa0385150:CDS
GTCTGATATGGGTGAGTGAA+TGG 0.473028 3_1:-88670517 Msa0385150:CDS
GCTAAGAATGCAGATGCAAC+AGG 0.473355 3_1:+88670479 None:intergenic
ATGAATGCATACCTGAGATC+TGG 0.474526 3_1:+88670364 None:intergenic
ACAGATCAATAACGTGATTA+CGG 0.475142 3_1:+88669332 None:intergenic
CTTGTTGTCCCAACTGAACC+AGG 0.475271 3_1:+88671351 None:intergenic
GGAAATGTCCCTTATGAAGT+TGG 0.475379 3_1:+88673208 None:intergenic
ATTTCTCGCCGCAACCGGGT+CGG 0.478416 3_1:-88673090 Msa0385150:five_prime_UTR
AGGATACGTTCACTTGTAAG+AGG 0.479664 3_1:+88671686 None:intergenic
ATACTCTGTCGTTGTGTTGG+AGG 0.482880 3_1:+88673047 None:intergenic
CAAAAGGAGGATGTTGTGGT+TGG 0.485199 3_1:-88672707 Msa0385150:CDS
TCAATGCAGTTTCAGATCGA+TGG 0.485525 3_1:+88672967 None:intergenic
TACTGCCTCGGTGCTATCGT+GGG 0.488542 3_1:-88672022 Msa0385150:CDS
GAACCGGTTCCCGGTCCTCC+TGG 0.489943 3_1:-88672594 Msa0385150:CDS
ATGGGGAGAAGGAGTCGAAA+TGG 0.490979 3_1:+88673111 None:intergenic
GGTCTGACCCGACCCGGTTG+CGG 0.492298 3_1:+88673082 None:intergenic
ACCTACTTACTTCTAAATCT+AGG 0.493860 3_1:-88673165 Msa0385150:five_prime_UTR
GTAGCTACTGGAGCACTTGT+TGG 0.494083 3_1:-88669796 Msa0385150:CDS
GTAAGCTTCTTCAAGGCAAA+GGG 0.494576 3_1:-88670980 Msa0385150:CDS
AGTATACTCTGTCGTTGTGT+TGG 0.494988 3_1:+88673044 None:intergenic
AACAACAAAATAAGTTGGAG+AGG 0.494998 3_1:-88672144 Msa0385150:CDS
AAATTCAGATAAACCCGAAC+CGG 0.495107 3_1:-88672610 Msa0385150:CDS
CAAAAGGAATGTATGATGCC+GGG 0.495516 3_1:-88672077 Msa0385150:CDS
GCAGATTTAGATCTAACAAA+AGG 0.496053 3_1:-88672093 Msa0385150:CDS
TCGAAGATCTGATGGTTTGA+AGG 0.496987 3_1:+88670394 None:intergenic
GAAGCCCAACCTGGTTCAGT+TGG 0.502198 3_1:-88671360 Msa0385150:CDS
CCCACAATTTGTGCATCACA+GGG 0.503590 3_1:-88669899 Msa0385150:CDS
GTGATTCTGGCTCTTGTGGT+CGG 0.505371 3_1:-88672672 Msa0385150:CDS
AAGCCCAACCTGGTTCAGTT+GGG 0.506162 3_1:-88671359 Msa0385150:CDS
ACAAAAGGAATGTATGATGC+CGG 0.506505 3_1:-88672078 Msa0385150:CDS
TATAACAGTGCTGTCATAGT+TGG 0.509805 3_1:-88669706 Msa0385150:CDS
ATACTAGCTAGGTTGTTGGT+TGG 0.510801 3_1:-88673026 Msa0385150:five_prime_UTR
TGACTCATGCTAGCGTCGGT+GGG 0.511117 3_1:+88673305 None:intergenic
TGCAACATCTGATCCGGGAC+AGG 0.511750 3_1:+88671666 None:intergenic
GAGTATACTAGCTAGGTTGT+TGG 0.514068 3_1:-88673030 Msa0385150:five_prime_UTR
GCTACTGGAGCACTTGTTGG+TGG 0.515300 3_1:-88669793 Msa0385150:CDS
ACCTGTAGCATGGTAGAGCC+AGG 0.516769 3_1:+88671441 None:intergenic
GTTAGCAATGTATTTGTTTG+GGG 0.523868 3_1:-88672854 Msa0385150:five_prime_UTR
TTGTCCCAACTGAACCAGGT+TGG 0.523981 3_1:+88671355 None:intergenic
AACCAGCACAAGATTCTCTC+AGG 0.525412 3_1:-88671954 Msa0385150:CDS
TAGTTTAGGAGAAGGATTGA+AGG 0.527196 3_1:+88669650 None:intergenic
AGCTCTTCATACCTGAGTTC+CGG 0.531252 3_1:+88671324 None:intergenic
CACCTGAGAGAATCTTGTGC+TGG 0.533013 3_1:+88671952 None:intergenic
TCTCATATCCAACTTCATAA+GGG 0.534299 3_1:-88673216 Msa0385150:five_prime_UTR
TTGACTCATGCTAGCGTCGG+TGG 0.535961 3_1:+88673304 None:intergenic
CCCCTGTGATGCACAAATTG+TGG 0.536207 3_1:+88669898 None:intergenic
AGTGCTCCAGTAGCTACATT+GGG 0.536888 3_1:+88669802 None:intergenic
CAACAAGCTTGCCGGAACTC+AGG 0.539769 3_1:-88671335 Msa0385150:intron
TCCTACCTTCAGTATGTGAC+TGG 0.540197 3_1:-88671412 Msa0385150:CDS
CTTCCAGGCTGATTACGTGT+TGG 0.540229 3_1:-88669971 Msa0385150:intron
CGGAACCATATGAACTTGAA+AGG 0.540605 3_1:+88670957 None:intergenic
AAGTGCTCCAGTAGCTACAT+TGG 0.543749 3_1:+88669801 None:intergenic
GCAAAGTCTCGAAGATCTGA+TGG 0.544007 3_1:+88670386 None:intergenic
TTACTGCCTCGGTGCTATCG+TGG 0.544348 3_1:-88672023 Msa0385150:CDS
ATGTAAGTCTCATTTAAGAA+AGG 0.549620 3_1:+88669769 None:intergenic
GTTTGTGATTCTGGCTCTTG+TGG 0.550904 3_1:-88672676 Msa0385150:CDS
AGTAAGCTTCTTCAAGGCAA+AGG 0.552883 3_1:-88670981 Msa0385150:CDS
ACCTGGCTCTACCATGCTAC+AGG 0.553331 3_1:-88671442 Msa0385150:CDS
ACCAAACTTCATGTGATCCC+CGG 0.556653 3_1:+88672059 None:intergenic
CAATAGAATAAGCTCAGAGC+TGG 0.556969 3_1:+88669413 None:intergenic
CAAGTGAACGTATCCTGTCC+CGG 0.560701 3_1:-88671679 Msa0385150:CDS
GTGAACCGTGGTGTCTGGAT+AGG 0.561179 3_1:-88669489 Msa0385150:three_prime_UTR
GGATTGAAGGGCCGAAGATG+TGG 0.569561 3_1:+88669663 None:intergenic
CTGTTGCAGATCACAAGTGT+TGG 0.571688 3_1:-88671741 Msa0385150:CDS
TCAATGGCACCAGGAGGACC+GGG 0.573055 3_1:+88672585 None:intergenic
ACAGCACTGTTATATGTGCT+TGG 0.573334 3_1:+88669715 None:intergenic
GGGGATTCGGCTCTTAAGGA+TGG 0.573397 3_1:-88672123 Msa0385150:CDS
TGCGGCGAGAAATGGGGAGA+AGG 0.575232 3_1:+88673100 None:intergenic
AGTTTAGGAGAAGGATTGAA+GGG 0.578741 3_1:+88669651 None:intergenic
ACATACTATAGTTTAGGAGA+AGG 0.578891 3_1:+88669642 None:intergenic
TTATAACTCAACTGGATATG+GGG 0.582247 3_1:-88671485 Msa0385150:CDS
AAGACCACACATTACAGCCT+CGG 0.582653 3_1:+88670910 None:intergenic
ACAACAAAATAAGTTGGAGA+GGG 0.586545 3_1:-88672143 Msa0385150:CDS
AGCTACATTGGGATTCGGAT+CGG 0.590300 3_1:+88669813 None:intergenic
GACTCATGCTAGCGTCGGTG+GGG 0.591120 3_1:+88673306 None:intergenic
TCTAGGAACAATTCTATGCA+AGG 0.591369 3_1:-88669742 Msa0385150:CDS
TCAGCTGCAACATCTGATCC+GGG 0.591508 3_1:+88671661 None:intergenic
GATATGGGTCTGACCCGACC+CGG 0.592804 3_1:+88673076 None:intergenic
TGTTGGAGGAAAATGGATAT+GGG 0.596187 3_1:+88673061 None:intergenic
CGTTCCTCAGTAATTAACTC+AGG 0.597205 3_1:+88671712 None:intergenic
GCCTAGATTTAGAAGTAAGT+AGG 0.598675 3_1:+88673164 None:intergenic
AGATCAAAAGGAGGATGTTG+TGG 0.599433 3_1:-88672711 Msa0385150:CDS
CCCGGTTGCGGCGAGAAATG+GGG 0.601279 3_1:+88673094 None:intergenic
GTAATCACGTTATTGATCTG+TGG 0.604164 3_1:-88669330 Msa0385150:three_prime_UTR
CAGCACAAGATTCTCTCAGG+TGG 0.615600 3_1:-88671951 Msa0385150:CDS
TTTGGCCAGTCACATACTGA+AGG 0.616951 3_1:+88671407 None:intergenic
AGGAATCATCACCTGTAGCA+TGG 0.618916 3_1:+88671431 None:intergenic
AATGCAGAAAACAGAGTTTG+GGG 0.620773 3_1:+88672774 None:intergenic
AAACTGGTTGCAAGGATGGG+TGG 0.621140 3_1:-88669852 Msa0385150:CDS
TATTACTGCATGTAGAATCA+CGG 0.626929 3_1:+88673187 None:intergenic
AAAAGGAATGTATGATGCCG+GGG 0.628087 3_1:-88672076 Msa0385150:CDS
ATGGTAATGAACGATATCGC+GGG 0.628262 3_1:+88673130 None:intergenic
AACGACAGAGTATACTAGCT+AGG 0.630471 3_1:-88673037 Msa0385150:five_prime_UTR
GGATACGTTCACTTGTAAGA+GGG 0.631666 3_1:+88671687 None:intergenic
GAATAAGCTCAGAGCTGGTG+AGG 0.639588 3_1:+88669418 None:intergenic
GGAGATCAAATGGATGCTGT+TGG 0.641613 3_1:-88671985 Msa0385150:CDS
TCCGCCGAGGCTGTAATGTG+TGG 0.641659 3_1:-88670914 Msa0385150:CDS
ACCAGAAAACTCATATGCTG+AGG 0.647665 3_1:+88669940 None:intergenic
ACCGAGGCAGTAAAAGCCAT+AGG 0.648080 3_1:+88672033 None:intergenic
CAACAAAATAAGTTGGAGAG+GGG 0.657191 3_1:-88672142 Msa0385150:CDS
ATATACAGAACATTCTCCGA+AGG 0.657437 3_1:+88671901 None:intergenic
GCCAGTCACATACTGAAGGT+AGG 0.663540 3_1:+88671411 None:intergenic
AGATTGACTCATGCTAGCGT+CGG 0.665494 3_1:+88673301 None:intergenic
ACCACACATTACAGCCTCGG+CGG 0.674391 3_1:+88670913 None:intergenic
GATACGTTCACTTGTAAGAG+GGG 0.676663 3_1:+88671688 None:intergenic
AATGGTAATGAACGATATCG+CGG 0.691941 3_1:+88673129 None:intergenic
CCACAATTTGTGCATCACAG+GGG 0.697583 3_1:-88669898 Msa0385150:CDS
TAGACCTGAGTTAATTACTG+AGG 0.715470 3_1:-88671716 Msa0385150:CDS
ACTCAAAAGAAGTTGCGACG+CGG 0.717202 3_1:-88669601 Msa0385150:three_prime_UTR
AAATTATAGAAAATCCGCCG+AGG 0.730261 3_1:-88670927 Msa0385150:CDS
ACTAGCCTATCCAGACACCA+CGG 0.756467 3_1:+88669484 None:intergenic
AATTGCCCACGATAGCACCG+AGG 0.782103 3_1:+88672017 None:intergenic
TGAAGTTGGATATGAGAACG+TGG 0.785477 3_1:+88673222 None:intergenic
AATATATTGAGTGTGAACCG+TGG 0.788543 3_1:-88669501 Msa0385150:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATAAAAAAAAACACTT+CGG + chr3_1:88671396-88671415 None:intergenic 10.0%
!! TAGAAATATATTACTAAAAA+TGG + chr3_1:88672028-88672047 None:intergenic 10.0%
!! TATAAAACATTTAATGTTAT+TGG + chr3_1:88672423-88672442 None:intergenic 10.0%
!!! TAATAACACATTTCTTATTT+AGG - chr3_1:88669717-88669736 Msa0385150:CDS 15.0%
!!! TTCTTTTTCTTTTATATAGA+TGG - chr3_1:88672074-88672093 Msa0385150:CDS 15.0%
!! GTAAATTCTTCTTATATTAA+GGG + chr3_1:88672303-88672322 None:intergenic 15.0%
!!! AGGAGTTTATTTTTTTTTTT+TGG - chr3_1:88672338-88672357 Msa0385150:intron 15.0%
!! TTAATTAGTATAAAATTGAG+TGG - chr3_1:88672380-88672399 Msa0385150:intron 15.0%
!!! TTTAATGTTATTGGTTTAAT+TGG + chr3_1:88672414-88672433 None:intergenic 15.0%
!! TTTAGTATAAATTTACATGT+AGG + chr3_1:88672446-88672465 None:intergenic 15.0%
!! ATTTATCTGACATTAAATAA+AGG - chr3_1:88672467-88672486 Msa0385150:intron 15.0%
!! TTTATCTGACATTAAATAAA+GGG - chr3_1:88672468-88672487 Msa0385150:intron 15.0%
!!! AATTGTTTGAAATCGTTAAA+CGG + chr3_1:88669624-88669643 None:intergenic 20.0%
!! TAATGTCTATATTTGGAAAT+AGG + chr3_1:88669680-88669699 None:intergenic 20.0%
!!! ATATTCCTTTTTTTCATTCT+CGG - chr3_1:88670110-88670129 Msa0385150:intron 20.0%
!!! AAAACAGTTATTTACTTTTG+CGG - chr3_1:88671056-88671075 Msa0385150:intron 20.0%
!!! AATAAGTAGAAGTATCATTT+AGG + chr3_1:88671482-88671501 None:intergenic 20.0%
!! CTAATCAGATTATAAGTTAA+GGG + chr3_1:88671953-88671972 None:intergenic 20.0%
!!! AATAGTTTTATTAGATAGTC+TGG - chr3_1:88671980-88671999 Msa0385150:CDS 20.0%
!!! TCTGAATCACATTTTATATT+GGG + chr3_1:88672197-88672216 None:intergenic 20.0%
!!! ATCTGAATCACATTTTATAT+TGG + chr3_1:88672198-88672217 None:intergenic 20.0%
!! GGTAAATTCTTCTTATATTA+AGG + chr3_1:88672304-88672323 None:intergenic 20.0%
!! AGTCATTAATTAATGTATAC+AGG - chr3_1:88673149-88673168 Msa0385150:five_prime_UTR 20.0%
!!! AATCAACCATATATTTTACA+AGG + chr3_1:88673231-88673250 None:intergenic 20.0%
!!! ATTCTTTTTGTTATTGTTGT+TGG - chr3_1:88673248-88673267 Msa0385150:five_prime_UTR 20.0%
! ACAACGATAATGTCTATATT+TGG + chr3_1:88669687-88669706 None:intergenic 25.0%
! AGTTAGCAATGTATTTGTTT+GGG - chr3_1:88669758-88669777 Msa0385150:CDS 25.0%
!!! AGAAGCATATTTTTGATCAA+TGG + chr3_1:88670047-88670066 None:intergenic 25.0%
! TTGTGAAATGCAAGAAATAA+AGG + chr3_1:88670139-88670158 None:intergenic 25.0%
!!! TAATGTTTTAAAAACCGAAC+TGG - chr3_1:88670230-88670249 Msa0385150:intron 25.0%
!!! TGGTTTTGAAAACATTGTTT+TGG - chr3_1:88670369-88670388 Msa0385150:intron 25.0%
! TAGAGAACAACAAAATAAGT+TGG - chr3_1:88670464-88670483 Msa0385150:CDS 25.0%
! TTCATTTATCAAAATCGATG+TGG - chr3_1:88670836-88670855 Msa0385150:intron 25.0%
! TATTATAACTCAACTGGATA+TGG - chr3_1:88671126-88671145 Msa0385150:intron 25.0%
! ATTATAACTCAACTGGATAT+GGG - chr3_1:88671127-88671146 Msa0385150:intron 25.0%
! TAGAATTTGGAAACAAGATT+CGG + chr3_1:88671316-88671335 None:intergenic 25.0%
! TTGTTTCCAAATTCTAAACT+AGG - chr3_1:88671320-88671339 Msa0385150:intron 25.0%
!! AATGATCCTAGTTTAGAATT+TGG + chr3_1:88671329-88671348 None:intergenic 25.0%
! AATGCTTTCATGTATATACT+AGG - chr3_1:88671518-88671537 Msa0385150:CDS 25.0%
! ATGCTTTCATGTATATACTA+GGG - chr3_1:88671519-88671538 Msa0385150:CDS 25.0%
!! TCTGACTTGATATTAACTAA+TGG - chr3_1:88671788-88671807 Msa0385150:intron 25.0%
!! CTGACTTGATATTAACTAAT+GGG - chr3_1:88671789-88671808 Msa0385150:intron 25.0%
! AATTTGTGTATTCAATGCAT+TGG - chr3_1:88671849-88671868 Msa0385150:intron 25.0%
! GCTAATCAGATTATAAGTTA+AGG + chr3_1:88671954-88671973 None:intergenic 25.0%
! TTTATATAGATGGTCTGATA+TGG - chr3_1:88672084-88672103 Msa0385150:CDS 25.0%
! TTATATAGATGGTCTGATAT+GGG - chr3_1:88672085-88672104 Msa0385150:CDS 25.0%
!!! TTTTTTTTTGGTACAGATCA+AGG - chr3_1:88672350-88672369 Msa0385150:intron 25.0%
!!! AAGAAATTGTGCGTATTTTT+TGG + chr3_1:88672556-88672575 None:intergenic 25.0%
! TACGCACAATTTCTTATAAT+AGG - chr3_1:88672561-88672580 Msa0385150:CDS 25.0%
! ACGCACAATTTCTTATAATA+GGG - chr3_1:88672562-88672581 Msa0385150:CDS 25.0%
! ATGTAAGTCTCATTTAAGAA+AGG + chr3_1:88672847-88672866 None:intergenic 25.0%
! ACTAATAATACGTGATGATA+AGG + chr3_1:88673065-88673084 None:intergenic 25.0%
! GTACTTCCTTGTAAAATATA+TGG - chr3_1:88673222-88673241 Msa0385150:five_prime_UTR 25.0%
TTCTCATATCCAACTTCATA+AGG - chr3_1:88669396-88669415 Msa0385150:three_prime_UTR 30.0%
TCTCATATCCAACTTCATAA+GGG - chr3_1:88669397-88669416 Msa0385150:three_prime_UTR 30.0%
TATTACTGCATGTAGAATCA+CGG + chr3_1:88669429-88669448 None:intergenic 30.0%
ACCTACTTACTTCTAAATCT+AGG - chr3_1:88669448-88669467 Msa0385150:three_prime_UTR 30.0%
GAGTTAGCAATGTATTTGTT+TGG - chr3_1:88669757-88669776 Msa0385150:CDS 30.0%
GTTAGCAATGTATTTGTTTG+GGG - chr3_1:88669759-88669778 Msa0385150:CDS 30.0%
AAATGCAGAAAACAGAGTTT+GGG + chr3_1:88669843-88669862 None:intergenic 30.0%
AGAGAAAAATCGAGATCAAA+AGG - chr3_1:88669890-88669909 Msa0385150:CDS 30.0%
ATTTCTTGCATTTCACAATG+TGG - chr3_1:88670141-88670160 Msa0385150:intron 30.0%
!! CAATGTGGTTGGTTTATTAT+AGG - chr3_1:88670156-88670175 Msa0385150:intron 30.0%
!! AATACTTTGGTGGGTTATTT+AGG + chr3_1:88670325-88670344 None:intergenic 30.0%
! AACAACAAAATAAGTTGGAG+AGG - chr3_1:88670469-88670488 Msa0385150:CDS 30.0%
! ACAACAAAATAAGTTGGAGA+GGG - chr3_1:88670470-88670489 Msa0385150:CDS 30.0%
GCAGATTTAGATCTAACAAA+AGG - chr3_1:88670520-88670539 Msa0385150:CDS 30.0%
! TCTAGAATATGGAGATCAAA+TGG - chr3_1:88670618-88670637 Msa0385150:intron 30.0%
! TTCTGTATATTCAGGTTAGT+TGG - chr3_1:88670725-88670744 Msa0385150:intron 30.0%
TTATAATATGTCGCAACTTC+AGG + chr3_1:88671114-88671133 None:intergenic 30.0%
TTATAACTCAACTGGATATG+GGG - chr3_1:88671128-88671147 Msa0385150:intron 30.0%
GTCTATTCTATGTAATGTGT+AGG + chr3_1:88671431-88671450 None:intergenic 30.0%
TAGGATAAGATAATGCCATA+AGG + chr3_1:88671463-88671482 None:intergenic 30.0%
TGCTTTCATGTATATACTAG+GGG - chr3_1:88671520-88671539 Msa0385150:CDS 30.0%
ATAATCCTTCTTCTTAATGC+AGG - chr3_1:88671596-88671615 Msa0385150:CDS 30.0%
!! TTTTCTATAATTTTGGAGGC+CGG + chr3_1:88671679-88671698 None:intergenic 30.0%
! CGGATTTTCTATAATTTTGG+AGG + chr3_1:88671683-88671702 None:intergenic 30.0%
!!! AATTTTCATAAAAAGTGCCC+CGG + chr3_1:88671833-88671852 None:intergenic 30.0%
!!! AGTTTTATTAGATAGTCTGG+AGG - chr3_1:88671983-88672002 Msa0385150:CDS 30.0%
! TTTTTGTAGAATACTCTCTC+TGG - chr3_1:88672277-88672296 Msa0385150:intron 30.0%
TTTACCAAAATCACAGATCA+AGG - chr3_1:88672318-88672337 Msa0385150:intron 30.0%
AAAACTTGTCTAATACTTCC+AGG - chr3_1:88672627-88672646 Msa0385150:CDS 30.0%
!! ATGAGACTTACATTGATTCT+AGG - chr3_1:88672854-88672873 Msa0385150:five_prime_UTR 30.0%
ACATACTATAGTTTAGGAGA+AGG + chr3_1:88672974-88672993 None:intergenic 30.0%
!! CTTTTGAGTGGAATTGAATA+TGG + chr3_1:88673001-88673020 None:intergenic 30.0%
CATCACGTATTATTAGTGTA+TGG - chr3_1:88673068-88673087 Msa0385150:five_prime_UTR 30.0%
ACAGATCAATAACGTGATTA+CGG + chr3_1:88673284-88673303 None:intergenic 30.0%
! TTGAGGGGTATAATGGTAAA+AGG + chr3_1:88669349-88669368 None:intergenic 35.0%
GCCTAGATTTAGAAGTAAGT+AGG + chr3_1:88669452-88669471 None:intergenic 35.0%
! AATGGTAATGAACGATATCG+CGG + chr3_1:88669487-88669506 None:intergenic 35.0%
TGTTGGAGGAAAATGGATAT+GGG + chr3_1:88669555-88669574 None:intergenic 35.0%
AATGCAGAAAACAGAGTTTG+GGG + chr3_1:88669842-88669861 None:intergenic 35.0%
CAAATGCAGAAAACAGAGTT+TGG + chr3_1:88669844-88669863 None:intergenic 35.0%
GAAAAATCGAGATCAAAAGG+AGG - chr3_1:88669893-88669912 Msa0385150:CDS 35.0%
GTTTATTGCGTTTGTGATTC+TGG - chr3_1:88669928-88669947 Msa0385150:CDS 35.0%
AAATTCAGATAAACCCGAAC+CGG - chr3_1:88670003-88670022 Msa0385150:intron 35.0%
!! TATTTTTGATCAATGGCACC+AGG + chr3_1:88670040-88670059 None:intergenic 35.0%
GGTAACCGAGAATGAAAAAA+AGG + chr3_1:88670118-88670137 None:intergenic 35.0%
AACCGAACTGGATATTGAAT+CGG - chr3_1:88670242-88670261 Msa0385150:intron 35.0%
TACGGTTCAAATACTTTGGT+GGG + chr3_1:88670334-88670353 None:intergenic 35.0%
ATGCTACGGTTCAAATACTT+TGG + chr3_1:88670338-88670357 None:intergenic 35.0%
CCAAATCAAATCACATGCTA+CGG + chr3_1:88670352-88670371 None:intergenic 35.0%
GACCATTAACCAACTAGAAT+GGG + chr3_1:88670411-88670430 None:intergenic 35.0%
TGACCATTAACCAACTAGAA+TGG + chr3_1:88670412-88670431 None:intergenic 35.0%
! CAACAAAATAAGTTGGAGAG+GGG - chr3_1:88670471-88670490 Msa0385150:CDS 35.0%
ACAAAAGGAATGTATGATGC+CGG - chr3_1:88670535-88670554 Msa0385150:intron 35.0%
!!! CATGAAGTTTGGTTTTCCTA+TGG - chr3_1:88670564-88670583 Msa0385150:intron 35.0%
ATATACAGAACATTCTCCGA+AGG + chr3_1:88670715-88670734 None:intergenic 35.0%
GGAGAATGTTCTGTATATTC+AGG - chr3_1:88670717-88670736 Msa0385150:intron 35.0%
TTTATCAAAATCGATGTGGC+AGG - chr3_1:88670840-88670859 Msa0385150:intron 35.0%
TAGACCTGAGTTAATTACTG+AGG - chr3_1:88670897-88670916 Msa0385150:CDS 35.0%
! ATAACTGTTTTGCATGCTTG+AGG + chr3_1:88671047-88671066 None:intergenic 35.0%
GCGACATATTATAACTCAAC+TGG - chr3_1:88671120-88671139 Msa0385150:intron 35.0%
ATAGACTCAATCAAGCCTTA+TGG - chr3_1:88671445-88671464 Msa0385150:CDS 35.0%
CAAAACCTGCATTAAGAAGA+AGG + chr3_1:88671604-88671623 None:intergenic 35.0%
! ATCTAGAGTAAGCTTCTTCA+AGG - chr3_1:88671626-88671645 Msa0385150:CDS 35.0%
!! CTTTCAAGTTCATATGGTTC+CGG - chr3_1:88671657-88671676 Msa0385150:CDS 35.0%
!! CGGCGGATTTTCTATAATTT+TGG + chr3_1:88671686-88671705 None:intergenic 35.0%
AAATTATAGAAAATCCGCCG+AGG - chr3_1:88671686-88671705 Msa0385150:CDS 35.0%
!!! ACTATCAGTTCTGCTTTTTG+TGG + chr3_1:88671748-88671767 None:intergenic 35.0%
ATCAAGTCAGATAGCATTCA+AGG + chr3_1:88671779-88671798 None:intergenic 35.0%
!!! ATTTTCATAAAAAGTGCCCC+GGG + chr3_1:88671832-88671851 None:intergenic 35.0%
AACGATCGTAACACTCTTTA+AGG + chr3_1:88671923-88671942 None:intergenic 35.0%
! AACTCCTTGATCTGTGATTT+TGG + chr3_1:88672325-88672344 None:intergenic 35.0%
ATAGGGATCAGAGATAGTAT+CGG - chr3_1:88672579-88672598 Msa0385150:CDS 35.0%
ATTCCTGCTAATGCAAAAAC+TGG - chr3_1:88672745-88672764 Msa0385150:exon 35.0%
TAATGCAAAAACTGGTTGCA+AGG - chr3_1:88672753-88672772 Msa0385150:five_prime_UTR 35.0%
TCTAGGAACAATTCTATGCA+AGG - chr3_1:88672871-88672890 Msa0385150:five_prime_UTR 35.0%
TATAACAGTGCTGTCATAGT+TGG - chr3_1:88672907-88672926 Msa0385150:five_prime_UTR 35.0%
AAGTTTAGTCACCACATCTT+CGG - chr3_1:88672939-88672958 Msa0385150:five_prime_UTR 35.0%
AGTTTAGGAGAAGGATTGAA+GGG + chr3_1:88672965-88672984 None:intergenic 35.0%
TAGTTTAGGAGAAGGATTGA+AGG + chr3_1:88672966-88672985 None:intergenic 35.0%
GGAGCTACATACTATAGTTT+AGG + chr3_1:88672980-88672999 None:intergenic 35.0%
AATATATTGAGTGTGAACCG+TGG - chr3_1:88673112-88673131 Msa0385150:five_prime_UTR 35.0%
GTAATCACGTTATTGATCTG+TGG - chr3_1:88673283-88673302 Msa0385150:five_prime_UTR 35.0%
!! GTGGATTTTGAGGGGTATAA+TGG + chr3_1:88669356-88669375 None:intergenic 40.0%
!! TTTTGTCGGTGGATTTTGAG+GGG + chr3_1:88669364-88669383 None:intergenic 40.0%
!! GTTTTGTCGGTGGATTTTGA+GGG + chr3_1:88669365-88669384 None:intergenic 40.0%
!! TGTTTTGTCGGTGGATTTTG+AGG + chr3_1:88669366-88669385 None:intergenic 40.0%
!!! AACGTGGTGTTGTGTTTTGT+CGG + chr3_1:88669378-88669397 None:intergenic 40.0%
TGAAGTTGGATATGAGAACG+TGG + chr3_1:88669394-88669413 None:intergenic 40.0%
GGAAATGTCCCTTATGAAGT+TGG + chr3_1:88669408-88669427 None:intergenic 40.0%
! ATGGTAATGAACGATATCGC+GGG + chr3_1:88669486-88669505 None:intergenic 40.0%
GTGTTGGAGGAAAATGGATA+TGG + chr3_1:88669556-88669575 None:intergenic 40.0%
AGTATACTCTGTCGTTGTGT+TGG + chr3_1:88669572-88669591 None:intergenic 40.0%
AACGACAGAGTATACTAGCT+AGG - chr3_1:88669576-88669595 Msa0385150:three_prime_UTR 40.0%
GAGTATACTAGCTAGGTTGT+TGG - chr3_1:88669583-88669602 Msa0385150:three_prime_UTR 40.0%
ATACTAGCTAGGTTGTTGGT+TGG - chr3_1:88669587-88669606 Msa0385150:three_prime_UTR 40.0%
TCAATGCAGTTTCAGATCGA+TGG + chr3_1:88669649-88669668 None:intergenic 40.0%
!! GAAAACAGAGTTTGGGGTTT+TGG + chr3_1:88669836-88669855 None:intergenic 40.0%
AGATCAAAAGGAGGATGTTG+TGG - chr3_1:88669902-88669921 Msa0385150:CDS 40.0%
CTTGCATTTCACAATGTGGT+TGG - chr3_1:88670145-88670164 Msa0385150:intron 40.0%
!! TGCCGATTCAATATCCAGTT+CGG + chr3_1:88670247-88670266 None:intergenic 40.0%
TATTGAATCGGCAAGATCTC+TGG - chr3_1:88670254-88670273 Msa0385150:intron 40.0%
!! ACTTTGGTGGGTTATTTAGG+CGG + chr3_1:88670322-88670341 None:intergenic 40.0%
CTACGGTTCAAATACTTTGG+TGG + chr3_1:88670335-88670354 None:intergenic 40.0%
CCGTAGCATGTGATTTGATT+TGG - chr3_1:88670349-88670368 Msa0385150:intron 40.0%
! TGCCCATTCTAGTTGGTTAA+TGG - chr3_1:88670406-88670425 Msa0385150:CDS 40.0%
TGTTATTCATGTGATGCAGC+TGG - chr3_1:88670436-88670455 Msa0385150:CDS 40.0%
! AATAAGTTGGAGAGGGGATT+CGG - chr3_1:88670477-88670496 Msa0385150:CDS 40.0%
CAAAAGGAATGTATGATGCC+GGG - chr3_1:88670536-88670555 Msa0385150:intron 40.0%
AAAAGGAATGTATGATGCCG+GGG - chr3_1:88670537-88670556 Msa0385150:intron 40.0%
!! TCGTGGGCAATTCTAGAATA+TGG - chr3_1:88670607-88670626 Msa0385150:intron 40.0%
!! AATCTTGTGCTGGTTCCAAT+TGG + chr3_1:88670654-88670673 None:intergenic 40.0%
CGTTCCTCAGTAATTAACTC+AGG + chr3_1:88670904-88670923 None:intergenic 40.0%
GATACGTTCACTTGTAAGAG+GGG + chr3_1:88670928-88670947 None:intergenic 40.0%
GGATACGTTCACTTGTAAGA+GGG + chr3_1:88670929-88670948 None:intergenic 40.0%
AGGATACGTTCACTTGTAAG+AGG + chr3_1:88670930-88670949 None:intergenic 40.0%
! ATATGGGGATGAGCTTTTGT+GGG - chr3_1:88671143-88671162 Msa0385150:intron 40.0%
! GAGCATAGTCTTCTCCATTT+TGG + chr3_1:88671227-88671246 None:intergenic 40.0%
GGAGAAGACTATGCTCAATT+TGG - chr3_1:88671231-88671250 Msa0385150:intron 40.0%
AGTAAGCTTCTTCAAGGCAA+AGG - chr3_1:88671632-88671651 Msa0385150:CDS 40.0%
GTAAGCTTCTTCAAGGCAAA+GGG - chr3_1:88671633-88671652 Msa0385150:CDS 40.0%
!! AAGGGCCTTTCAAGTTCATA+TGG - chr3_1:88671651-88671670 Msa0385150:CDS 40.0%
CGGAACCATATGAACTTGAA+AGG + chr3_1:88671659-88671678 None:intergenic 40.0%
!!! TTTTCATAAAAAGTGCCCCG+GGG + chr3_1:88671831-88671850 None:intergenic 40.0%
TCGAAGATCTGATGGTTTGA+AGG + chr3_1:88672222-88672241 None:intergenic 40.0%
ATGAATGCATACCTGAGATC+TGG + chr3_1:88672252-88672271 None:intergenic 40.0%
! TCCTCAGCATATGAGTTTTC+TGG - chr3_1:88672672-88672691 Msa0385150:CDS 40.0%
ACCAGAAAACTCATATGCTG+AGG + chr3_1:88672676-88672695 None:intergenic 40.0%
! TCAGCATATGAGTTTTCTGG+TGG - chr3_1:88672675-88672694 Msa0385150:CDS 40.0%
!! CAGCATATGAGTTTTCTGGT+GGG - chr3_1:88672676-88672695 Msa0385150:CDS 40.0%
!! ATGAGTTTTCTGGTGGGATA+TGG - chr3_1:88672682-88672701 Msa0385150:CDS 40.0%
! CAACCAGTTTTTGCATTAGC+AGG + chr3_1:88672751-88672770 None:intergenic 40.0%
CAAAAACTGGTTGCAAGGAT+GGG - chr3_1:88672758-88672777 Msa0385150:five_prime_UTR 40.0%
ACAGCACTGTTATATGTGCT+TGG + chr3_1:88672901-88672920 None:intergenic 40.0%
!! CGACGCGGATTTAAGTTTTA+TGG - chr3_1:88673027-88673046 Msa0385150:five_prime_UTR 40.0%
CAATAGAATAAGCTCAGAGC+TGG + chr3_1:88673203-88673222 None:intergenic 40.0%
! AGATTGACTCATGCTAGCGT+CGG + chr3_1:88669315-88669334 None:intergenic 45.0%
GTCGTTGTGTTGGAGGAAAA+TGG + chr3_1:88669562-88669581 None:intergenic 45.0%
ATACTCTGTCGTTGTGTTGG+AGG + chr3_1:88669569-88669588 None:intergenic 45.0%
CAAAAGGAGGATGTTGTGGT+TGG - chr3_1:88669906-88669925 Msa0385150:CDS 45.0%
!! GTTTGTGATTCTGGCTCTTG+TGG - chr3_1:88669937-88669956 Msa0385150:CDS 45.0%
! TTTTGATCAATGGCACCAGG+AGG + chr3_1:88670037-88670056 None:intergenic 45.0%
ATCGTGGTTTCATCGCAGTT+TGG + chr3_1:88670295-88670314 None:intergenic 45.0%
TTATTTAGGCGGCTCAATCG+TGG + chr3_1:88670311-88670330 None:intergenic 45.0%
ATGTTGCTGCCCATTCTAGT+TGG - chr3_1:88670399-88670418 Msa0385150:CDS 45.0%
ACCAAACTTCATGTGATCCC+CGG + chr3_1:88670557-88670576 None:intergenic 45.0%
! TCCTATGGCTTTTACTGCCT+CGG - chr3_1:88670579-88670598 Msa0385150:intron 45.0%
GGAGATCAAATGGATGCTGT+TGG - chr3_1:88670628-88670647 Msa0385150:intron 45.0%
AATGGATGCTGTTGGCCAAT+TGG - chr3_1:88670636-88670655 Msa0385150:intron 45.0%
AACCAGCACAAGATTCTCTC+AGG - chr3_1:88670659-88670678 Msa0385150:intron 45.0%
TCTCGTCAATGCTCATCCTT+CGG - chr3_1:88670696-88670715 Msa0385150:intron 45.0%
TCAAAATCGATGTGGCAGGT+TGG - chr3_1:88670844-88670863 Msa0385150:intron 45.0%
CAACACTTGTGATCTGCAAC+AGG + chr3_1:88670874-88670893 None:intergenic 45.0%
CTGTTGCAGATCACAAGTGT+TGG - chr3_1:88670872-88670891 Msa0385150:CDS 45.0%
TTCAGCTGCAACATCTGATC+CGG + chr3_1:88670956-88670975 None:intergenic 45.0%
AGCAATGGCATCAGCATCTT+TGG - chr3_1:88670984-88671003 Msa0385150:CDS 45.0%
! ACTTTTGCGGACAAGCATAG+AGG - chr3_1:88671069-88671088 Msa0385150:intron 45.0%
! GATATGGGGATGAGCTTTTG+TGG - chr3_1:88671142-88671161 Msa0385150:intron 45.0%
AGGAATCATCACCTGTAGCA+TGG + chr3_1:88671185-88671204 None:intergenic 45.0%
TCCTACCTTCAGTATGTGAC+TGG - chr3_1:88671201-88671220 Msa0385150:intron 45.0%
TTTGGCCAGTCACATACTGA+AGG + chr3_1:88671209-88671228 None:intergenic 45.0%
! CAGTATGTGACTGGCCAAAA+TGG - chr3_1:88671210-88671229 Msa0385150:intron 45.0%
AGCTCTTCATACCTGAGTTC+CGG + chr3_1:88671292-88671311 None:intergenic 45.0%
AAGACCACACATTACAGCCT+CGG + chr3_1:88671706-88671725 None:intergenic 45.0%
!!! GTTCTGCTTTTTGTGGCTGT+TGG + chr3_1:88671741-88671760 None:intergenic 45.0%
!! TTTCATAAAAAGTGCCCCGG+GGG + chr3_1:88671830-88671849 None:intergenic 45.0%
GTCTGGAGGAACACAAACTA+TGG - chr3_1:88671997-88672016 Msa0385150:CDS 45.0%
GTCTGATATGGGTGAGTGAA+TGG - chr3_1:88672096-88672115 Msa0385150:CDS 45.0%
GCTAAGAATGCAGATGCAAC+AGG + chr3_1:88672137-88672156 None:intergenic 45.0%
GCAAAGTCTCGAAGATCTGA+TGG + chr3_1:88672230-88672249 None:intergenic 45.0%
TTCCAGGCTGATTACGTGTT+GGG - chr3_1:88672643-88672662 Msa0385150:CDS 45.0%
TCCCACAATTTGTGCATCAC+AGG - chr3_1:88672713-88672732 Msa0385150:CDS 45.0%
CCCTGTGATGCACAAATTGT+GGG + chr3_1:88672717-88672736 None:intergenic 45.0%
CCCACAATTTGTGCATCACA+GGG - chr3_1:88672714-88672733 Msa0385150:CDS 45.0%
CCACAATTTGTGCATCACAG+GGG - chr3_1:88672715-88672734 Msa0385150:CDS 45.0%
GCAAAAACTGGTTGCAAGGA+TGG - chr3_1:88672757-88672776 Msa0385150:five_prime_UTR 45.0%
AGCTACATTGGGATTCGGAT+CGG + chr3_1:88672803-88672822 None:intergenic 45.0%
CCAGTAGCTACATTGGGATT+CGG + chr3_1:88672808-88672827 None:intergenic 45.0%
AGTGCTCCAGTAGCTACATT+GGG + chr3_1:88672814-88672833 None:intergenic 45.0%
AAGTGCTCCAGTAGCTACAT+TGG + chr3_1:88672815-88672834 None:intergenic 45.0%
ACTCAAAAGAAGTTGCGACG+CGG - chr3_1:88673012-88673031 Msa0385150:five_prime_UTR 45.0%
!!! GTGGTGTTGTGTTTTGTCGG+TGG + chr3_1:88669375-88669394 None:intergenic 50.0%
ATGGGGAGAAGGAGTCGAAA+TGG + chr3_1:88669505-88669524 None:intergenic 50.0%
!! GTGATTCTGGCTCTTGTGGT+CGG - chr3_1:88669941-88669960 Msa0385150:CDS 50.0%
TCGGCAAGATCTCTGGATCA+TGG - chr3_1:88670261-88670280 Msa0385150:intron 50.0%
ACCGAGGCAGTAAAAGCCAT+AGG + chr3_1:88670583-88670602 None:intergenic 50.0%
CACCTGAGAGAATCTTGTGC+TGG + chr3_1:88670664-88670683 None:intergenic 50.0%
CAGCACAAGATTCTCTCAGG+TGG - chr3_1:88670662-88670681 Msa0385150:intron 50.0%
CAAGTGAACGTATCCTGTCC+CGG - chr3_1:88670934-88670953 Msa0385150:CDS 50.0%
TCAGCTGCAACATCTGATCC+GGG + chr3_1:88670955-88670974 None:intergenic 50.0%
AGCTGAAACTGCAGCAGCAA+TGG - chr3_1:88670969-88670988 Msa0385150:CDS 50.0%
GCCAGTCACATACTGAAGGT+AGG + chr3_1:88671205-88671224 None:intergenic 50.0%
CTCAATTTGGAAGCCCAACC+TGG - chr3_1:88671244-88671263 Msa0385150:intron 50.0%
AAGCCCAACCTGGTTCAGTT+GGG - chr3_1:88671254-88671273 Msa0385150:intron 50.0%
TGTCCCAACTGAACCAGGTT+GGG + chr3_1:88671260-88671279 None:intergenic 50.0%
TTGTCCCAACTGAACCAGGT+TGG + chr3_1:88671261-88671280 None:intergenic 50.0%
! CTTGTTGTCCCAACTGAACC+AGG + chr3_1:88671265-88671284 None:intergenic 50.0%
AGTTGGGACAACAAGCTTGC+CGG - chr3_1:88671270-88671289 Msa0385150:intron 50.0%
TTTGTGGCTGTTGGAGAGTC+TGG + chr3_1:88671732-88671751 None:intergenic 50.0%
GAAATGCTAATGAGTGCCCC+CGG - chr3_1:88671811-88671830 Msa0385150:intron 50.0%
AAATGCTAATGAGTGCCCCC+GGG - chr3_1:88671812-88671831 Msa0385150:intron 50.0%
TCGAGACTTTGCCAGATCTC+AGG - chr3_1:88672238-88672257 Msa0385150:intron 50.0%
CTTCCAGGCTGATTACGTGT+TGG - chr3_1:88672642-88672661 Msa0385150:CDS 50.0%
CCCCTGTGATGCACAAATTG+TGG + chr3_1:88672718-88672737 None:intergenic 50.0%
AAACTGGTTGCAAGGATGGG+TGG - chr3_1:88672761-88672780 Msa0385150:five_prime_UTR 50.0%
CCGAATCCCAATGTAGCTAC+TGG - chr3_1:88672805-88672824 Msa0385150:five_prime_UTR 50.0%
! GTAGCTACTGGAGCACTTGT+TGG - chr3_1:88672817-88672836 Msa0385150:five_prime_UTR 50.0%
! GCGTCGCAACTTCTTTTGAG+TGG + chr3_1:88673013-88673032 None:intergenic 50.0%
! ACTAGCCTATCCAGACACCA+CGG + chr3_1:88673132-88673151 None:intergenic 50.0%
GAATAAGCTCAGAGCTGGTG+AGG + chr3_1:88673198-88673217 None:intergenic 50.0%
!! TGACTCATGCTAGCGTCGGT+GGG + chr3_1:88669311-88669330 None:intergenic 55.0%
! TTGACTCATGCTAGCGTCGG+TGG + chr3_1:88669312-88669331 None:intergenic 55.0%
! GCTAGGTTGTTGGTTGGTGC+TGG - chr3_1:88669593-88669612 Msa0385150:three_prime_UTR 55.0%
! GATAAACCCGAACCGGTTCC+CGG - chr3_1:88670010-88670029 Msa0385150:intron 55.0%
ATCAATGGCACCAGGAGGAC+CGG + chr3_1:88670032-88670051 None:intergenic 55.0%
GAGAGGGGATTCGGCTCTTA+AGG - chr3_1:88670486-88670505 Msa0385150:CDS 55.0%
GGGGATTCGGCTCTTAAGGA+TGG - chr3_1:88670490-88670509 Msa0385150:CDS 55.0%
GCCGGGGATCACATGAAGTT+TGG - chr3_1:88670553-88670572 Msa0385150:intron 55.0%
!! TTACTGCCTCGGTGCTATCG+TGG - chr3_1:88670590-88670609 Msa0385150:intron 55.0%
!! TACTGCCTCGGTGCTATCGT+GGG - chr3_1:88670591-88670610 Msa0385150:intron 55.0%
AATTGCCCACGATAGCACCG+AGG + chr3_1:88670599-88670618 None:intergenic 55.0%
TGCAACATCTGATCCGGGAC+AGG + chr3_1:88670950-88670969 None:intergenic 55.0%
! AGCTTTTGTGGGCAGCTACC+TGG - chr3_1:88671154-88671173 Msa0385150:intron 55.0%
!! ACCTGGCTCTACCATGCTAC+AGG - chr3_1:88671171-88671190 Msa0385150:intron 55.0%
ACCTGTAGCATGGTAGAGCC+AGG + chr3_1:88671175-88671194 None:intergenic 55.0%
GAAGCCCAACCTGGTTCAGT+TGG - chr3_1:88671253-88671272 Msa0385150:intron 55.0%
CAACAAGCTTGCCGGAACTC+AGG - chr3_1:88671278-88671297 Msa0385150:intron 55.0%
ACCACACATTACAGCCTCGG+CGG + chr3_1:88671703-88671722 None:intergenic 55.0%
AATGCTAATGAGTGCCCCCG+GGG - chr3_1:88671813-88671832 Msa0385150:intron 55.0%
TGCCCAACACGTAATCAGCC+TGG + chr3_1:88672648-88672667 None:intergenic 55.0%
! GCTACTGGAGCACTTGTTGG+TGG - chr3_1:88672820-88672839 Msa0385150:five_prime_UTR 55.0%
GGATTGAAGGGCCGAAGATG+TGG + chr3_1:88672953-88672972 None:intergenic 55.0%
TGAGTGTGAACCGTGGTGTC+TGG - chr3_1:88673119-88673138 Msa0385150:five_prime_UTR 55.0%
GTGAACCGTGGTGTCTGGAT+AGG - chr3_1:88673124-88673143 Msa0385150:five_prime_UTR 55.0%
!! GACTCATGCTAGCGTCGGTG+GGG + chr3_1:88669310-88669329 None:intergenic 60.0%
TGCGGCGAGAAATGGGGAGA+AGG + chr3_1:88669516-88669535 None:intergenic 60.0%
TCCCCATTTCTCGCCGCAAC+CGG - chr3_1:88669518-88669537 Msa0385150:three_prime_UTR 60.0%
ACCCGGTTGCGGCGAGAAAT+GGG + chr3_1:88669523-88669542 None:intergenic 60.0%
ATTTCTCGCCGCAACCGGGT+CGG - chr3_1:88669523-88669542 Msa0385150:three_prime_UTR 60.0%
GATATGGGTCTGACCCGACC+CGG + chr3_1:88669540-88669559 None:intergenic 60.0%
TCAATGGCACCAGGAGGACC+GGG + chr3_1:88670031-88670050 None:intergenic 60.0%
TCCGCCGAGGCTGTAATGTG+TGG - chr3_1:88671699-88671718 Msa0385150:CDS 60.0%
GTTGCAAGGATGGGTGGCAG+TGG - chr3_1:88672767-88672786 Msa0385150:five_prime_UTR 60.0%
CCCGGTTGCGGCGAGAAATG+GGG + chr3_1:88669522-88669541 None:intergenic 65.0%
CCCCATTTCTCGCCGCAACC+GGG - chr3_1:88669519-88669538 Msa0385150:three_prime_UTR 65.0%
GACCCGGTTGCGGCGAGAAA+TGG + chr3_1:88669524-88669543 None:intergenic 65.0%
TTTCTCGCCGCAACCGGGTC+GGG - chr3_1:88669524-88669543 Msa0385150:three_prime_UTR 65.0%
AGGAGGACCGGGAACCGGTT+CGG + chr3_1:88670020-88670039 None:intergenic 65.0%
GGTCTGACCCGACCCGGTTG+CGG + chr3_1:88669534-88669553 None:intergenic 70.0%
! GGAGGACCGGGAACCGGTTC+GGG + chr3_1:88670019-88670038 None:intergenic 70.0%
! GAACCGGTTCCCGGTCCTCC+TGG - chr3_1:88670019-88670038 Msa0385150:intron 70.0%
GCACCAGGAGGACCGGGAAC+CGG + chr3_1:88670025-88670044 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 88669304 88673331 88669304 ID=Msa0385150;Name=Msa0385150
chr3_1 mRNA 88669304 88673331 88669304 ID=Msa0385150-mRNA-1;Parent=Msa0385150;Name=Msa0385150-mRNA-1;_AED=0.05;_eAED=0.05;_QI=583|1|1|1|1|1|6|350|529
chr3_1 exon 88669304 88669986 88669304 ID=Msa0385150-mRNA-1:exon:23953;Parent=Msa0385150-mRNA-1
chr3_1 exon 88670376 88670542 88670376 ID=Msa0385150-mRNA-1:exon:23952;Parent=Msa0385150-mRNA-1
chr3_1 exon 88670870 88671017 88670870 ID=Msa0385150-mRNA-1:exon:23951;Parent=Msa0385150-mRNA-1
chr3_1 exon 88671336 88671773 88671336 ID=Msa0385150-mRNA-1:exon:23950;Parent=Msa0385150-mRNA-1
chr3_1 exon 88671897 88672180 88671897 ID=Msa0385150-mRNA-1:exon:23949;Parent=Msa0385150-mRNA-1
chr3_1 exon 88672529 88673331 88672529 ID=Msa0385150-mRNA-1:exon:23948;Parent=Msa0385150-mRNA-1
chr3_1 five_prime_UTR 88672749 88673331 88672749 ID=Msa0385150-mRNA-1:five_prime_utr;Parent=Msa0385150-mRNA-1
chr3_1 CDS 88672529 88672748 88672529 ID=Msa0385150-mRNA-1:cds;Parent=Msa0385150-mRNA-1
chr3_1 CDS 88671897 88672180 88671897 ID=Msa0385150-mRNA-1:cds;Parent=Msa0385150-mRNA-1
chr3_1 CDS 88671336 88671773 88671336 ID=Msa0385150-mRNA-1:cds;Parent=Msa0385150-mRNA-1
chr3_1 CDS 88670870 88671017 88670870 ID=Msa0385150-mRNA-1:cds;Parent=Msa0385150-mRNA-1
chr3_1 CDS 88670376 88670542 88670376 ID=Msa0385150-mRNA-1:cds;Parent=Msa0385150-mRNA-1
chr3_1 CDS 88669654 88669986 88669654 ID=Msa0385150-mRNA-1:cds;Parent=Msa0385150-mRNA-1
chr3_1 three_prime_UTR 88669304 88669653 88669304 ID=Msa0385150-mRNA-1:three_prime_utr;Parent=Msa0385150-mRNA-1
Gene Sequence

>Msa0385150

ATGAGAGAAAAATCGAGATCAAAAGGAGGATGTTGTGGTTGGTTTATTGCGTTTGTGATTCTGGCTCTTGTGGTCGGTGCTATTGTTTATGCTGTTAAGAAGAAAATCGATAACTCAAATTCAGATAAACCCGAACCGGTTCCCGGTCCTCCTGGTGCCATTGATCAAAAATATGCTTCTGCTCTCAAAACTGCAATGCAATTCTTCGACGTGCAAAAATCTGGCAAGTTAGAGAACAACAAAATAAGTTGGAGAGGGGATTCGGCTCTTAAGGATGGAAAGCAAGCAGATTTAGATCTAACAAAAGGAATGTATGATGCCGGGGATCACATGAAGTTTGGTTTTCCTATGGCTTTTACTGCCTCGGTGCTATCGTGGGCAATTCTAGAATATGGAGATCAAATGGATGCTGTTGGCCAATTGGAACCAGCACAAGATTCTCTCAGGTGGATCACTGATTTTCTCGTCAATGCTCATCCTTCGGAGAATGTTCTGTATATTCAGGTTGGTGATCCTGTTGCAGATCACAAGTGTTGGAATAGACCTGAGTTAATTACTGAGGAACGACCCCTCTTACAAGTGAACGTATCCTGTCCCGGATCAGATGTTGCAGCTGAAACTGCAGCAGCAATGGCATCAGCATCTTTGGTCTTCAAAAAGTCAGATGCTACATATTCAAGCACTCTCCTCAAGCATGCAAAACAGTTATTTACTTTTGCGGACAAGCATAGAGGAATTTACAGTGAGAATATACCTGAAGTTGCGACATATTATAACTCAACTGGATATGGGGATGAGCTTTTGTGGGCAGCTACCTGGCTCTACCATGCTACAGGTGATGATTCCTACCTTCAGTATGTGACTGGCCAAAATGGAGAAGACTATGCTCAATTTGGAAGCCCAACCTGGTTCAGTTGGGACAACAAGCTTGCCGGAACTCAGGTTTTGTTATCTAGAGTAAGCTTCTTCAAGGCAAAGGGCCTTTCAAGTTCATATGGTTCCGGCCTCCAAAATTATAGAAAATCCGCCGAGGCTGTAATGTGTGGTCTTCTTCCAGACTCTCCAACAGCCACAAAAAGCAGAACTGATAATGGTCTGATATGGGTGAGTGAATGGAACGCTTTGCAGCATCCTGTTGCATCTGCATTCTTAGCTTCTGTTTACAGTGACTATATGCTTACAACGCAGACTCCCAATATAAAATGTGATTCAGATTCCTTCAAACCATCAGATCTTCGAGACTTTGCCAGATCTCAGGCTGATTACGTGTTGGGCAAGAATCCTCAGCATATGAGTTTTCTGGTGGGATATGGAAAGAATTTCCCACAATTTGTGCATCACAGGGGAGCTTCAATTCCTGCTAATGCAAAAACTGGTTGCAAGGATGGGTGGCAGTGGCTTGACTCATCCGATCCGAATCCCAATGTAGCTACTGGAGCACTTGTTGGTGGACCTTTCTTAAATGAGACTTACATTGATTCTAGGAACAATTCTATGCAAGGAGAACCAAGCACATATAACAGTGCTGTCATAGTTGGTCTCTTATCAAGTTTAGTCACCACATCTTCGGCCCTTCAATCCTTCTCCTAA
Protein sequence

>Msa0385150

MREKSRSKGGCCGWFIAFVILALVVGAIVYAVKKKIDNSNSDKPEPVPGPPGAIDQKYASALKTAMQFFDVQKSGKLENNKISWRGDSALKDGKQADLDLTKGMYDAGDHMKFGFPMAFTASVLSWAILEYGDQMDAVGQLEPAQDSLRWITDFLVNAHPSENVLYIQVGDPVADHKCWNRPELITEERPLLQVNVSCPGSDVAAETAAAMASASLVFKKSDATYSSTLLKHAKQLFTFADKHRGIYSENIPEVATYYNSTGYGDELLWAATWLYHATGDDSYLQYVTGQNGEDYAQFGSPTWFSWDNKLAGTQVLLSRVSFFKAKGLSSSYGSGLQNYRKSAEAVMCGLLPDSPTATKSRTDNGLIWVSEWNALQHPVASAFLASVYSDYMLTTQTPNIKCDSDSFKPSDLRDFARSQADYVLGKNPQHMSFLVGYGKNFPQFVHHRGASIPANAKTGCKDGWQWLDSSDPNPNVATGALVGGPFLNETYIDSRNNSMQGEPSTYNSAVIVGLLSSLVTTSSALQSFS*