Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1455600 | XP_003603741.2 | 99.622 | 529 | 2 | 0 | 1 | 529 | 1 | 529 | 0.0 | 1095 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1455600 | sp|Q69SG5|GUN24_ORYSJ | 65.909 | 528 | 175 | 3 | 5 | 529 | 3 | 528 | 0.0 | 714 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1455600 | G7J4Q1 | 99.622 | 529 | 2 | 0 | 1 | 529 | 1 | 529 | 0.0 | 1095 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0799450 | Msa1455600 | 0.805325 | 1.409358e-49 | -8.615850e-47 |
Msa0837710 | Msa1455600 | 0.803905 | 2.788342e-49 | -8.615850e-47 |
Msa0385150 | Msa1455600 | 0.929350 | 7.889602e-93 | -8.615850e-47 |
Msa0435480 | Msa1455600 | 0.934062 | 7.211481e-96 | -8.615850e-47 |
Msa0479390 | Msa1455600 | 0.987126 | 3.802482e-169 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1455600 | MtrunA17_Chr3g0142501 | 99.622 | 529 | 2 | 0 | 1 | 529 | 1 | 529 | 0.0 | 1095 |
Msa1455600 | MtrunA17_Chr8g0372031 | 62.330 | 515 | 191 | 1 | 14 | 528 | 23 | 534 | 0.0 | 638 |
Msa1455600 | MtrunA17_Chr5g0439311 | 44.798 | 471 | 246 | 9 | 58 | 519 | 32 | 497 | 5.18e-138 | 409 |
Msa1455600 | MtrunA17_Chr4g0038131 | 43.154 | 482 | 255 | 7 | 58 | 528 | 29 | 502 | 3.11e-136 | 408 |
Msa1455600 | MtrunA17_Chr8g0388051 | 46.482 | 469 | 237 | 10 | 58 | 518 | 29 | 491 | 2.21e-135 | 406 |
Msa1455600 | MtrunA17_Chr3g0119371 | 43.524 | 471 | 252 | 9 | 58 | 519 | 41 | 506 | 6.17e-130 | 389 |
Msa1455600 | MtrunA17_Chr1g0164201 | 44.563 | 469 | 239 | 10 | 58 | 518 | 26 | 481 | 1.10e-126 | 379 |
Msa1455600 | MtrunA17_Chr5g0397201 | 43.644 | 472 | 245 | 7 | 58 | 523 | 41 | 497 | 5.32e-125 | 375 |
Msa1455600 | MtrunA17_Chr3g0145261 | 42.827 | 474 | 250 | 9 | 56 | 519 | 23 | 485 | 2.52e-122 | 368 |
Msa1455600 | MtrunA17_Chr3g0119821 | 42.004 | 469 | 253 | 8 | 56 | 516 | 34 | 491 | 7.87e-122 | 367 |
Msa1455600 | MtrunA17_Chr3g0086311 | 41.453 | 468 | 252 | 7 | 58 | 520 | 31 | 481 | 9.00e-119 | 358 |
Msa1455600 | MtrunA17_Chr1g0195271 | 41.079 | 482 | 266 | 9 | 51 | 525 | 33 | 503 | 3.45e-115 | 350 |
Msa1455600 | MtrunA17_Chr2g0291461 | 41.698 | 530 | 267 | 14 | 14 | 518 | 77 | 589 | 2.97e-114 | 351 |
Msa1455600 | MtrunA17_Chr5g0444721 | 39.219 | 538 | 242 | 14 | 58 | 518 | 35 | 564 | 1.53e-113 | 348 |
Msa1455600 | MtrunA17_Chr8g0391391 | 41.300 | 477 | 247 | 11 | 56 | 516 | 29 | 488 | 3.11e-113 | 345 |
Msa1455600 | MtrunA17_Chr3g0080171 | 41.880 | 468 | 248 | 10 | 58 | 516 | 26 | 478 | 4.44e-112 | 341 |
Msa1455600 | MtrunA17_Chr4g0018301 | 40.343 | 466 | 255 | 8 | 58 | 516 | 46 | 495 | 3.67e-110 | 337 |
Msa1455600 | MtrunA17_Chr3g0120661 | 39.212 | 533 | 285 | 15 | 14 | 524 | 82 | 597 | 5.32e-106 | 330 |
Msa1455600 | MtrunA17_Chr5g0397181 | 40.686 | 408 | 222 | 5 | 117 | 519 | 1 | 393 | 1.95e-104 | 318 |
Msa1455600 | MtrunA17_Chr4g0018361 | 38.703 | 478 | 260 | 12 | 56 | 516 | 26 | 487 | 1.11e-101 | 315 |
Msa1455600 | MtrunA17_Chr3g0126111 | 36.981 | 530 | 282 | 18 | 18 | 519 | 76 | 581 | 2.95e-95 | 301 |
Msa1455600 | MtrunA17_Chr3g0136381 | 40.385 | 364 | 199 | 5 | 58 | 420 | 31 | 377 | 1.85e-91 | 286 |
Msa1455600 | MtrunA17_Chr4g0018341 | 39.024 | 287 | 155 | 7 | 236 | 516 | 2 | 274 | 1.35e-58 | 196 |
Msa1455600 | MtrunA17_Chr4g0018351 | 43.085 | 188 | 104 | 2 | 53 | 239 | 26 | 211 | 2.81e-44 | 155 |
Msa1455600 | MtrunA17_Chr1g0164181 | 43.889 | 180 | 97 | 1 | 98 | 273 | 3 | 182 | 4.85e-41 | 150 |
Msa1455600 | MtrunA17_Chr1g0164181 | 40.476 | 168 | 93 | 4 | 354 | 516 | 164 | 329 | 5.71e-35 | 134 |
Msa1455600 | MtrunA17_Chr4g0072811 | 44.586 | 157 | 86 | 1 | 373 | 528 | 19 | 175 | 2.80e-38 | 139 |
Msa1455600 | MtrunA17_Chr7g0269571 | 35.227 | 176 | 98 | 3 | 366 | 526 | 43 | 217 | 2.35e-31 | 121 |
Msa1455600 | MtrunA17_Chr3g0136371 | 47.778 | 90 | 43 | 2 | 421 | 506 | 2 | 91 | 3.76e-21 | 88.6 |
Msa1455600 | MtrunA17_Chr4g0022271 | 37.405 | 131 | 71 | 4 | 375 | 500 | 29 | 153 | 6.09e-20 | 87.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1455600 | AT1G19940.2 | 68.371 | 528 | 154 | 4 | 1 | 528 | 1 | 515 | 0.0 | 709 |
Msa1455600 | AT1G19940.1 | 68.371 | 528 | 154 | 4 | 1 | 528 | 1 | 515 | 0.0 | 709 |
Msa1455600 | AT1G75680.1 | 69.187 | 529 | 157 | 5 | 1 | 528 | 1 | 524 | 0.0 | 708 |
Msa1455600 | AT1G19940.3 | 65.952 | 420 | 130 | 4 | 1 | 420 | 1 | 407 | 0.0 | 546 |
Msa1455600 | AT4G11050.2 | 45.798 | 476 | 244 | 9 | 58 | 525 | 27 | 496 | 1.65e-139 | 414 |
Msa1455600 | AT4G11050.3 | 46.008 | 476 | 243 | 10 | 58 | 525 | 27 | 496 | 9.95e-139 | 415 |
Msa1455600 | AT4G11050.1 | 46.008 | 476 | 243 | 10 | 58 | 525 | 27 | 496 | 1.11e-138 | 415 |
Msa1455600 | AT1G64390.1 | 44.676 | 479 | 251 | 9 | 58 | 528 | 26 | 498 | 1.54e-136 | 409 |
Msa1455600 | AT2G32990.1 | 43.644 | 472 | 244 | 10 | 58 | 516 | 40 | 502 | 3.82e-131 | 392 |
Msa1455600 | AT2G44540.1 | 44.397 | 473 | 247 | 7 | 52 | 518 | 28 | 490 | 1.71e-128 | 384 |
Msa1455600 | AT2G44550.1 | 45.435 | 471 | 238 | 9 | 53 | 516 | 29 | 487 | 3.03e-128 | 383 |
Msa1455600 | AT2G44560.1 | 45.032 | 473 | 244 | 8 | 52 | 518 | 28 | 490 | 4.74e-126 | 378 |
Msa1455600 | AT1G48930.1 | 46.055 | 469 | 235 | 7 | 58 | 516 | 31 | 491 | 4.04e-125 | 380 |
Msa1455600 | AT2G44570.1 | 42.887 | 471 | 252 | 9 | 55 | 518 | 31 | 491 | 3.85e-122 | 368 |
Msa1455600 | AT4G23560.1 | 42.463 | 471 | 251 | 6 | 57 | 522 | 23 | 478 | 2.19e-119 | 360 |
Msa1455600 | AT1G71380.1 | 42.706 | 473 | 248 | 9 | 52 | 516 | 19 | 476 | 1.15e-118 | 358 |
Msa1455600 | AT4G02290.1 | 41.667 | 468 | 255 | 9 | 56 | 516 | 51 | 507 | 1.15e-118 | 360 |
Msa1455600 | AT1G02800.1 | 41.983 | 474 | 255 | 10 | 55 | 521 | 41 | 501 | 6.30e-118 | 357 |
Msa1455600 | AT3G43860.2 | 41.845 | 466 | 249 | 7 | 58 | 518 | 35 | 483 | 3.12e-117 | 355 |
Msa1455600 | AT3G43860.1 | 41.845 | 466 | 249 | 7 | 58 | 518 | 35 | 483 | 3.12e-117 | 355 |
Msa1455600 | AT1G22880.1 | 42.616 | 474 | 249 | 9 | 58 | 523 | 25 | 483 | 5.19e-117 | 354 |
Msa1455600 | AT4G09740.1 | 42.340 | 470 | 251 | 7 | 58 | 522 | 24 | 478 | 6.86e-117 | 353 |
Msa1455600 | AT4G39010.1 | 40.764 | 471 | 259 | 9 | 56 | 516 | 28 | 488 | 6.66e-115 | 349 |
Msa1455600 | AT1G23210.1 | 40.000 | 470 | 254 | 9 | 58 | 515 | 29 | 482 | 5.90e-114 | 347 |
Msa1455600 | AT1G70710.1 | 40.127 | 471 | 252 | 9 | 58 | 515 | 29 | 482 | 6.75e-114 | 347 |
Msa1455600 | AT4G39000.1 | 39.496 | 476 | 268 | 9 | 51 | 516 | 19 | 484 | 6.04e-111 | 339 |
Msa1455600 | AT5G49720.1 | 40.566 | 530 | 273 | 14 | 14 | 518 | 74 | 586 | 3.83e-108 | 336 |
Msa1455600 | AT4G24260.1 | 43.149 | 489 | 244 | 14 | 58 | 522 | 109 | 587 | 9.64e-105 | 327 |
Msa1455600 | AT4G38990.2 | 37.654 | 486 | 268 | 12 | 51 | 516 | 17 | 487 | 1.92e-100 | 312 |
Msa1455600 | AT1G65610.1 | 36.484 | 529 | 298 | 13 | 14 | 521 | 82 | 593 | 3.20e-100 | 315 |
Msa1455600 | AT1G22880.2 | 41.546 | 414 | 220 | 8 | 117 | 523 | 1 | 399 | 3.65e-99 | 305 |
Msa1455600 | AT4G02290.2 | 40.148 | 406 | 226 | 8 | 117 | 516 | 1 | 395 | 1.44e-95 | 296 |
Msa1455600 | AT2G44570.2 | 41.514 | 383 | 212 | 7 | 55 | 435 | 31 | 403 | 6.58e-89 | 279 |
Msa1455600 | AT4G39010.2 | 39.516 | 372 | 209 | 8 | 56 | 421 | 28 | 389 | 9.00e-83 | 263 |
Msa1455600 | AT1G22880.3 | 44.728 | 313 | 155 | 7 | 58 | 366 | 25 | 323 | 8.85e-71 | 230 |
Msa1455600 | AT4G24260.3 | 42.119 | 387 | 193 | 13 | 58 | 420 | 109 | 488 | 8.10e-70 | 232 |
Msa1455600 | AT4G24260.2 | 44.164 | 317 | 150 | 11 | 58 | 352 | 109 | 420 | 1.67e-63 | 214 |
Msa1455600 | AT4G38990.1 | 36.311 | 347 | 183 | 7 | 51 | 392 | 17 | 330 | 1.47e-59 | 201 |
Find 180 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAAACAGAGTTTGGGGTTT+TGG | 0.147944 | tig0036379:-8489 | None:intergenic |
CATCACGTATTATTAGTTTA+TGG | 0.157518 | tig0036379:+11725 | Msa1455600:three_prime_UTR |
GTTTATTGCGTTTGTGATTC+TGG | 0.168400 | tig0036379:+8584 | Msa1455600:CDS |
GAGCATAATCTTCTCCATTT+TGG | 0.188257 | tig0036379:-9880 | None:intergenic |
GGAGAAGATTATGCTCAATT+TGG | 0.211354 | tig0036379:+9887 | Msa1455600:CDS |
TATTATAACTCAACTGGATA+TGG | 0.212670 | tig0036379:+9782 | Msa1455600:CDS |
TAATAACACATTTCTTATTT+AGG | 0.225442 | tig0036379:+8371 | Msa1455600:five_prime_UTR |
TTTATATAGATGGTCTGATA+TGG | 0.236900 | tig0036379:+10740 | Msa1455600:intron |
ACAACGATAATGTCTATATT+TGG | 0.241703 | tig0036379:-8338 | None:intergenic |
ATGAGACTTACATTGATTCT+AGG | 0.242483 | tig0036379:+11511 | Msa1455600:CDS |
GTACTTCCTTGTAAAATATA+TGG | 0.249625 | tig0036379:+11879 | Msa1455600:three_prime_UTR |
TCCCCATTTCTCGCCGCAAC+CGG | 0.259382 | tig0036379:+8172 | Msa1455600:five_prime_UTR |
TTGAGGGGTATAATGGTAAA+AGG | 0.271920 | tig0036379:-8000 | None:intergenic |
TAATGTCTATATTTGGAAAT+AGG | 0.284072 | tig0036379:-8331 | None:intergenic |
CAAATGCAGAAAACAGAGTT+TGG | 0.299311 | tig0036379:-8497 | None:intergenic |
GGAGAATGTTCTGTATATTC+AGG | 0.309453 | tig0036379:+9373 | Msa1455600:CDS |
TCGTGGGCAATTCTAGAATA+TGG | 0.312428 | tig0036379:+9263 | Msa1455600:CDS |
AGCAATGGCATCAGCATCTT+TGG | 0.319777 | tig0036379:+9640 | Msa1455600:CDS |
AGTTAGCAATGTATTTGTTT+GGG | 0.320297 | tig0036379:+8412 | Msa1455600:five_prime_UTR |
GGAGGACCGGGAACCGGTTC+GGG | 0.321906 | tig0036379:-8672 | None:intergenic |
TTTGTGGCTGTTGGAGAGTC+TGG | 0.335910 | tig0036379:-10385 | None:intergenic |
GAGAGGGGATTCGGCTCTTA+AGG | 0.338315 | tig0036379:+9142 | Msa1455600:CDS |
CAGTATGTGACTGGCCAAAA+TGG | 0.350134 | tig0036379:+9866 | Msa1455600:CDS |
GCCGGGGATCACATGAAGTT+TGG | 0.352977 | tig0036379:+9209 | Msa1455600:CDS |
CTTTCAAGTTCATATGGTTC+CGG | 0.354604 | tig0036379:+10313 | Msa1455600:CDS |
GACCCGGTTGCGGCGAGAAA+TGG | 0.355828 | tig0036379:-8175 | None:intergenic |
GAGTTAGCAATGTATTTGTT+TGG | 0.360242 | tig0036379:+8411 | Msa1455600:five_prime_UTR |
GATAAACCCGAACCGGTTCC+CGG | 0.365719 | tig0036379:+8666 | Msa1455600:CDS |
GTGTTGGAGGAAAATGGATA+TGG | 0.365793 | tig0036379:-8207 | None:intergenic |
TTATAATATGTCGCAACTTC+AGG | 0.368599 | tig0036379:-9767 | None:intergenic |
GGAGCTACATACTATAGTTT+AGG | 0.374553 | tig0036379:-11634 | None:intergenic |
TGTCCCAACTGAACCAGGTT+GGG | 0.383206 | tig0036379:-9913 | None:intergenic |
AGGAGGACCGGGAACCGGTT+CGG | 0.385546 | tig0036379:-8673 | None:intergenic |
GTCGTTGTGTTGGAGGAAAA+TGG | 0.386601 | tig0036379:-8213 | None:intergenic |
TTCTCATATCCAACTTCATA+AGG | 0.387488 | tig0036379:+8050 | Msa1455600:five_prime_UTR |
GCTAGGTTGTTGGTTGGTGC+TGG | 0.390689 | tig0036379:+8247 | Msa1455600:five_prime_UTR |
ACCCGGTTGCGGCGAGAAAT+GGG | 0.395938 | tig0036379:-8174 | None:intergenic |
AAATGCAGAAAACAGAGTTT+GGG | 0.396742 | tig0036379:-8496 | None:intergenic |
AGTCATTAATTAATGTATAC+AGG | 0.400302 | tig0036379:+11806 | Msa1455600:three_prime_UTR |
ATTATAACTCAACTGGATAT+GGG | 0.400764 | tig0036379:+9783 | Msa1455600:CDS |
AATTGTTTGAAATCGTTAAA+CGG | 0.407563 | tig0036379:-8275 | None:intergenic |
ACTAATAATACGTGATGATA+AGG | 0.416229 | tig0036379:-11719 | None:intergenic |
AAGGGCCTTTCAAGTTCATA+TGG | 0.416309 | tig0036379:+10307 | Msa1455600:CDS |
TTTCTCGCCGCAACCGGGTC+GGG | 0.419432 | tig0036379:+8178 | Msa1455600:five_prime_UTR |
TCTCGTCAATGCTCATCCTT+CGG | 0.427984 | tig0036379:+9352 | Msa1455600:CDS |
AATAAGTTGGAGAGGGGATT+CGG | 0.430660 | tig0036379:+9133 | Msa1455600:CDS |
AATGGATGCTGTTGGCCAAT+TGG | 0.431030 | tig0036379:+9292 | Msa1455600:CDS |
TTCCAGGCTGATTACGTGTT+GGG | 0.431458 | tig0036379:+11300 | Msa1455600:intron |
TTCAGCTGCAACATCTGATC+CGG | 0.435202 | tig0036379:-9609 | None:intergenic |
ATCAATGGCACCAGGAGGAC+CGG | 0.439759 | tig0036379:-8685 | None:intergenic |
GCGACATATTATAACTCAAC+TGG | 0.441782 | tig0036379:+9776 | Msa1455600:CDS |
TGAGTGTGAACCGTGGTGTC+TGG | 0.442330 | tig0036379:+11776 | Msa1455600:three_prime_UTR |
CCGAATCCCAATGTAGCTAC+TGG | 0.444550 | tig0036379:+11462 | Msa1455600:CDS |
GTTGCAAGGATGGGTGGCAG+TGG | 0.446186 | tig0036379:+11424 | Msa1455600:CDS |
TCTAGAATATGGAGATCAAA+TGG | 0.446875 | tig0036379:+9274 | Msa1455600:CDS |
ATCTAGAGTAAGCTTCTTCA+AGG | 0.446995 | tig0036379:+10282 | Msa1455600:CDS |
AGCTGAAACTGCAGCAGCAA+TGG | 0.448020 | tig0036379:+9625 | Msa1455600:CDS |
CCCCATTTCTCGCCGCAACC+GGG | 0.448967 | tig0036379:+8173 | Msa1455600:five_prime_UTR |
AAGTTTAGTCACCACATCTT+CGG | 0.449573 | tig0036379:+11596 | Msa1455600:CDS |
GCACCAGGAGGACCGGGAAC+CGG | 0.455702 | tig0036379:-8678 | None:intergenic |
TCGAGACTTTGCCAGATCTC+AGG | 0.456961 | tig0036379:+10894 | Msa1455600:CDS |
TTATATAGATGGTCTGATAT+GGG | 0.457104 | tig0036379:+10741 | Msa1455600:intron |
AGTTGGGACAACAAGCTTGC+CGG | 0.460646 | tig0036379:+9926 | Msa1455600:CDS |
CAACACTTGTGATCTGCAAC+AGG | 0.466398 | tig0036379:-9527 | None:intergenic |
CTCTGTGATGCACAAATTGT+GGG | 0.469293 | tig0036379:-11371 | None:intergenic |
AATCTTGTGCTGGTTCCAAT+TGG | 0.470000 | tig0036379:-9307 | None:intergenic |
TAGAGAACAACAAAATAAGT+TGG | 0.470544 | tig0036379:+9120 | Msa1455600:CDS |
CCAGTAGCTACATTGGGATT+CGG | 0.470664 | tig0036379:-11462 | None:intergenic |
CTCAATTTGGAAGCCCAACC+TGG | 0.472205 | tig0036379:+9900 | Msa1455600:CDS |
GTCTGATATGGGTGAGTGAA+TGG | 0.473028 | tig0036379:+10752 | Msa1455600:CDS |
GCTAAGAATGCAGATGCAAC+AGG | 0.473355 | tig0036379:-10790 | None:intergenic |
ATGAATGCATACCTGAGATC+TGG | 0.474526 | tig0036379:-10905 | None:intergenic |
ACAGATCAATAACGTGATTA+CGG | 0.475142 | tig0036379:-11938 | None:intergenic |
CTTGTTGTCCCAACTGAACC+AGG | 0.475271 | tig0036379:-9918 | None:intergenic |
GGAAATGTCCCTTATGAAGT+TGG | 0.475379 | tig0036379:-8059 | None:intergenic |
ATTTCTCGCCGCAACCGGGT+CGG | 0.478416 | tig0036379:+8177 | Msa1455600:five_prime_UTR |
AGGATACGTTCACTTGTAAG+AGG | 0.479664 | tig0036379:-9583 | None:intergenic |
ATACTCTGTCGTTGTGTTGG+AGG | 0.482880 | tig0036379:-8220 | None:intergenic |
CAAAAGGAGGATGTTGTGGT+TGG | 0.485199 | tig0036379:+8562 | Msa1455600:CDS |
TCAATGCAGTTTCAGATCGA+TGG | 0.485525 | tig0036379:-8300 | None:intergenic |
GAACCGGTTCCCGGTCCTCC+TGG | 0.489943 | tig0036379:+8675 | Msa1455600:CDS |
ATGGGGAGAAGGAGTCGAAA+TGG | 0.490979 | tig0036379:-8156 | None:intergenic |
GGTCTGACCCGACCCGGTTG+CGG | 0.492298 | tig0036379:-8185 | None:intergenic |
ACCTACTTACTTCTAAATCT+AGG | 0.493860 | tig0036379:+8102 | Msa1455600:five_prime_UTR |
GTAGCTACTGGAGCACTTGT+TGG | 0.494083 | tig0036379:+11474 | Msa1455600:CDS |
GTAAGCTTCTTCAAGGCAAA+GGG | 0.494576 | tig0036379:+10289 | Msa1455600:CDS |
AGTATACTCTGTCGTTGTGT+TGG | 0.494988 | tig0036379:-8223 | None:intergenic |
AACAACAAAATAAGTTGGAG+AGG | 0.494998 | tig0036379:+9125 | Msa1455600:CDS |
AAATTCAGATAAACCCGAAC+CGG | 0.495107 | tig0036379:+8659 | Msa1455600:CDS |
CAAAAGGAATGTATGATGCC+GGG | 0.495516 | tig0036379:+9192 | Msa1455600:CDS |
GCAGATTTAGATCTAACAAA+AGG | 0.496053 | tig0036379:+9176 | Msa1455600:CDS |
TCGAAGATCTGATGGTTTGA+AGG | 0.496987 | tig0036379:-10875 | None:intergenic |
CCTCTGTGATGCACAAATTG+TGG | 0.501280 | tig0036379:-11372 | None:intergenic |
GAAGCCCAACCTGGTTCAGT+TGG | 0.502198 | tig0036379:+9909 | Msa1455600:CDS |
GTGATTCTGGCTCTTGTGGT+CGG | 0.505371 | tig0036379:+8597 | Msa1455600:CDS |
AAGCCCAACCTGGTTCAGTT+GGG | 0.506162 | tig0036379:+9910 | Msa1455600:CDS |
ACAAAAGGAATGTATGATGC+CGG | 0.506505 | tig0036379:+9191 | Msa1455600:CDS |
TATAACAGTGCTGTCATAGT+TGG | 0.509805 | tig0036379:+11564 | Msa1455600:CDS |
ATACTAGCTAGGTTGTTGGT+TGG | 0.510801 | tig0036379:+8241 | Msa1455600:five_prime_UTR |
TGCAACATCTGATCCGGGAC+AGG | 0.511750 | tig0036379:-9603 | None:intergenic |
GAGTATACTAGCTAGGTTGT+TGG | 0.514068 | tig0036379:+8237 | Msa1455600:five_prime_UTR |
GCTACTGGAGCACTTGTTGG+TGG | 0.515300 | tig0036379:+11477 | Msa1455600:CDS |
ACCTGTAGCATGGTAGAGCC+AGG | 0.516769 | tig0036379:-9828 | None:intergenic |
GTTAGCAATGTATTTGTTTG+GGG | 0.523868 | tig0036379:+8413 | Msa1455600:five_prime_UTR |
TTGTCCCAACTGAACCAGGT+TGG | 0.523981 | tig0036379:-9914 | None:intergenic |
AACCAGCACAAGATTCTCTC+AGG | 0.525412 | tig0036379:+9315 | Msa1455600:CDS |
TACTGCCTCAGTGCTATCGT+GGG | 0.526117 | tig0036379:+9247 | Msa1455600:CDS |
TAGTTTAGGAGAAGGATTGA+AGG | 0.527196 | tig0036379:-11620 | None:intergenic |
AGCTCTTCATACCTGAGTTC+CGG | 0.531252 | tig0036379:-9945 | None:intergenic |
CACCTGAGAGAATCTTGTGC+TGG | 0.533013 | tig0036379:-9317 | None:intergenic |
TCTCATATCCAACTTCATAA+GGG | 0.534299 | tig0036379:+8051 | Msa1455600:five_prime_UTR |
AGTGCTCCAGTAGCTACATT+GGG | 0.536888 | tig0036379:-11468 | None:intergenic |
CTCATGCTAGCTTCGTCGGT+GGG | 0.537380 | tig0036379:-7959 | None:intergenic |
CAACAAGCTTGCCGGAACTC+AGG | 0.539769 | tig0036379:+9934 | Msa1455600:CDS |
TCCTACCTTCAGTATGTGAC+TGG | 0.540197 | tig0036379:+9857 | Msa1455600:CDS |
CTTCCAGGCTGATTACGTGT+TGG | 0.540229 | tig0036379:+11299 | Msa1455600:intron |
CGGAACCATATGAACTTGAA+AGG | 0.540605 | tig0036379:-10312 | None:intergenic |
AAGTGCTCCAGTAGCTACAT+TGG | 0.543749 | tig0036379:-11469 | None:intergenic |
GCAAAGTCTCGAAGATCTGA+TGG | 0.544007 | tig0036379:-10883 | None:intergenic |
ATGTAAGTCTCATTTAAGAA+AGG | 0.549620 | tig0036379:-11501 | None:intergenic |
GTTTGTGATTCTGGCTCTTG+TGG | 0.550904 | tig0036379:+8593 | Msa1455600:CDS |
TTGACTCATGCTAGCTTCGT+CGG | 0.552816 | tig0036379:-7963 | None:intergenic |
AGTAAGCTTCTTCAAGGCAA+AGG | 0.552883 | tig0036379:+10288 | Msa1455600:CDS |
ACCTGGCTCTACCATGCTAC+AGG | 0.553331 | tig0036379:+9827 | Msa1455600:CDS |
ACCAAACTTCATGTGATCCC+CGG | 0.556653 | tig0036379:-9210 | None:intergenic |
CAATAGAATAAGCTCAGAGC+TGG | 0.556969 | tig0036379:-11857 | None:intergenic |
CAAGTGAACGTATCCTGTCC+CGG | 0.560701 | tig0036379:+9590 | Msa1455600:CDS |
GGATTGAAGGGCCGAAGATG+TGG | 0.569561 | tig0036379:-11607 | None:intergenic |
GTGAACCGTGGTGTCTGGAT+AGG | 0.571683 | tig0036379:+11781 | Msa1455600:three_prime_UTR |
CTGTTGCAGATCACAAGTGT+TGG | 0.571688 | tig0036379:+9528 | Msa1455600:CDS |
TCAATGGCACCAGGAGGACC+GGG | 0.573055 | tig0036379:-8684 | None:intergenic |
ACAGCACTGTTATATGTGCT+TGG | 0.573334 | tig0036379:-11555 | None:intergenic |
GGGGATTCGGCTCTTAAGGA+TGG | 0.573397 | tig0036379:+9146 | Msa1455600:CDS |
TGCGGCGAGAAATGGGGAGA+AGG | 0.575232 | tig0036379:-8167 | None:intergenic |
TTACTGCCTCAGTGCTATCG+TGG | 0.577110 | tig0036379:+9246 | Msa1455600:CDS |
AGTTTAGGAGAAGGATTGAA+GGG | 0.578741 | tig0036379:-11619 | None:intergenic |
ACATACTATAGTTTAGGAGA+AGG | 0.578891 | tig0036379:-11628 | None:intergenic |
TTATAACTCAACTGGATATG+GGG | 0.582247 | tig0036379:+9784 | Msa1455600:CDS |
AAGACCACACATTACAGCCT+CGG | 0.582653 | tig0036379:-10359 | None:intergenic |
ACAACAAAATAAGTTGGAGA+GGG | 0.586545 | tig0036379:+9126 | Msa1455600:CDS |
AGCTACATTGGGATTCGGAT+CGG | 0.590300 | tig0036379:-11457 | None:intergenic |
TCTAGGAACAATTCTATGCA+AGG | 0.591369 | tig0036379:+11528 | Msa1455600:CDS |
TCAGCTGCAACATCTGATCC+GGG | 0.591508 | tig0036379:-9608 | None:intergenic |
GATATGGGTCTGACCCGACC+CGG | 0.592804 | tig0036379:-8191 | None:intergenic |
TGTTGGAGGAAAATGGATAT+GGG | 0.596187 | tig0036379:-8206 | None:intergenic |
CGTTCCTCAGTAATTAACTC+AGG | 0.597205 | tig0036379:-9557 | None:intergenic |
GCCTAGATTTAGAAGTAAGT+AGG | 0.598675 | tig0036379:-8103 | None:intergenic |
AGATCAAAAGGAGGATGTTG+TGG | 0.599433 | tig0036379:+8558 | Msa1455600:CDS |
CCCGGTTGCGGCGAGAAATG+GGG | 0.601279 | tig0036379:-8173 | None:intergenic |
GTAATCACGTTATTGATCTG+TGG | 0.604164 | tig0036379:+11940 | Msa1455600:three_prime_UTR |
ACTCATGCTAGCTTCGTCGG+TGG | 0.611279 | tig0036379:-7960 | None:intergenic |
ACTGAGGCAGTAAAAGCCAT+AGG | 0.613713 | tig0036379:-9236 | None:intergenic |
CAGCACAAGATTCTCTCAGG+TGG | 0.615600 | tig0036379:+9318 | Msa1455600:CDS |
TTTGGCCAGTCACATACTGA+AGG | 0.616951 | tig0036379:-9862 | None:intergenic |
AGGAATCATCACCTGTAGCA+TGG | 0.618916 | tig0036379:-9838 | None:intergenic |
AATGCAGAAAACAGAGTTTG+GGG | 0.620773 | tig0036379:-8495 | None:intergenic |
AAACTGGTTGCAAGGATGGG+TGG | 0.621140 | tig0036379:+11418 | Msa1455600:CDS |
TATTACTGCATGTAGAATCA+CGG | 0.626929 | tig0036379:-8080 | None:intergenic |
AAAAGGAATGTATGATGCCG+GGG | 0.628087 | tig0036379:+9193 | Msa1455600:CDS |
ATGGTAATGAACGATATCGC+GGG | 0.628262 | tig0036379:-8137 | None:intergenic |
AACGACAGAGTATACTAGCT+AGG | 0.630471 | tig0036379:+8230 | Msa1455600:five_prime_UTR |
GGATACGTTCACTTGTAAGA+GGG | 0.631666 | tig0036379:-9582 | None:intergenic |
GAATAAGCTCAGAGCTGGTG+AGG | 0.639588 | tig0036379:-11852 | None:intergenic |
GGAGATCAAATGGATGCTGT+TGG | 0.641613 | tig0036379:+9284 | Msa1455600:CDS |
TCCGCCGAGGCTGTAATGTG+TGG | 0.641659 | tig0036379:+10355 | Msa1455600:CDS |
ACCAGAAAACTCATATGCTG+AGG | 0.647665 | tig0036379:-11330 | None:intergenic |
CAACAAAATAAGTTGGAGAG+GGG | 0.657191 | tig0036379:+9127 | Msa1455600:CDS |
ATATACAGAACATTCTCCGA+AGG | 0.657437 | tig0036379:-9368 | None:intergenic |
GCCAGTCACATACTGAAGGT+AGG | 0.663540 | tig0036379:-9858 | None:intergenic |
CCACAATTTGTGCATCACAG+AGG | 0.673056 | tig0036379:+11372 | Msa1455600:CDS |
ACCACACATTACAGCCTCGG+CGG | 0.674391 | tig0036379:-10356 | None:intergenic |
GATACGTTCACTTGTAAGAG+GGG | 0.676663 | tig0036379:-9581 | None:intergenic |
AATGGTAATGAACGATATCG+CGG | 0.691941 | tig0036379:-8138 | None:intergenic |
TAGACCTGAGTTAATTACTG+AGG | 0.715470 | tig0036379:+9553 | Msa1455600:CDS |
ACTCAAAAGAAGTTGCGACG+CGG | 0.717202 | tig0036379:+11669 | Msa1455600:three_prime_UTR |
AAATTATAGAAAATCCGCCG+AGG | 0.730261 | tig0036379:+10342 | Msa1455600:CDS |
ACTAACCTATCCAGACACCA+CGG | 0.763242 | tig0036379:-11786 | None:intergenic |
AATTGCCCACGATAGCACTG+AGG | 0.772045 | tig0036379:-9252 | None:intergenic |
TGAAGTTGGATATGAGAACG+TGG | 0.785477 | tig0036379:-8045 | None:intergenic |
AATATATTGAGTGTGAACCG+TGG | 0.788543 | tig0036379:+11769 | Msa1455600:three_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATAAAAAAAAACACTT+CGG | - | tig0036379:10052-10071 | None:intergenic | 10.0% |
!! | TAGAAATATATTACTAAAAA+TGG | - | tig0036379:10684-10703 | None:intergenic | 10.0% |
!! | TATAAAACATTTAATGTTAT+TGG | - | tig0036379:11080-11099 | None:intergenic | 10.0% |
!!! | TAATAACACATTTCTTATTT+AGG | + | tig0036379:8371-8390 | Msa1455600:five_prime_UTR | 15.0% |
!!! | TTCTTTTTCTTTTATATAGA+TGG | + | tig0036379:10730-10749 | Msa1455600:intron | 15.0% |
!! | GTAAATTCTTCTTATATTAA+GGG | - | tig0036379:10959-10978 | None:intergenic | 15.0% |
!! | TTAATTAGTATAAAATTGAG+TGG | + | tig0036379:11037-11056 | Msa1455600:intron | 15.0% |
!!! | TTTAATGTTATTGGTTTAAT+TGG | - | tig0036379:11071-11090 | None:intergenic | 15.0% |
!! | TTTAGTATAAATTTACATGT+AGG | - | tig0036379:11103-11122 | None:intergenic | 15.0% |
!! | ATTTATCTGACATTAAATAA+AGG | + | tig0036379:11124-11143 | Msa1455600:intron | 15.0% |
!! | TTTATCTGACATTAAATAAA+GGG | + | tig0036379:11125-11144 | Msa1455600:intron | 15.0% |
!!! | AATTGTTTGAAATCGTTAAA+CGG | - | tig0036379:8278-8297 | None:intergenic | 20.0% |
!! | TAATGTCTATATTTGGAAAT+AGG | - | tig0036379:8334-8353 | None:intergenic | 20.0% |
!!! | ATAATCCTTTTTTTCATTCT+CGG | + | tig0036379:8766-8785 | Msa1455600:intron | 20.0% |
!!! | AAAACAGTTATTTACTTTTG+CGG | + | tig0036379:9712-9731 | Msa1455600:CDS | 20.0% |
!!! | AATAAGTAGAAGTATCATTT+AGG | - | tig0036379:10138-10157 | None:intergenic | 20.0% |
!! | CTAATCAGATTATAAGTTAA+GGG | - | tig0036379:10609-10628 | None:intergenic | 20.0% |
!!! | AATAGTTTTATTAGATAGTC+TGG | + | tig0036379:10636-10655 | Msa1455600:intron | 20.0% |
!!! | TCTGAATCACATTTTATATT+GGG | - | tig0036379:10853-10872 | None:intergenic | 20.0% |
!!! | ATCTGAATCACATTTTATAT+TGG | - | tig0036379:10854-10873 | None:intergenic | 20.0% |
!! | GGTAAATTCTTCTTATATTA+AGG | - | tig0036379:10960-10979 | None:intergenic | 20.0% |
!!! | GGAGTTGTATTTTTTTTTTT+TGG | + | tig0036379:10995-11014 | Msa1455600:intron | 20.0% |
!! | AGTCATTAATTAATGTATAC+AGG | + | tig0036379:11806-11825 | Msa1455600:three_prime_UTR | 20.0% |
!!! | AATCAACCATATATTTTACA+AGG | - | tig0036379:11888-11907 | None:intergenic | 20.0% |
!!! | ATTCTTTTTGTTATTGTTGT+TGG | + | tig0036379:11905-11924 | Msa1455600:three_prime_UTR | 20.0% |
! | ACAACGATAATGTCTATATT+TGG | - | tig0036379:8341-8360 | None:intergenic | 25.0% |
! | AGTTAGCAATGTATTTGTTT+GGG | + | tig0036379:8412-8431 | Msa1455600:five_prime_UTR | 25.0% |
!!! | AGAAGCATATTTTTGATCAA+TGG | - | tig0036379:8703-8722 | None:intergenic | 25.0% |
! | TTGTGAAATGCAAGAAATAA+AGG | - | tig0036379:8795-8814 | None:intergenic | 25.0% |
!!! | TAATGTTTTAAAAACCGAAC+TGG | + | tig0036379:8886-8905 | Msa1455600:intron | 25.0% |
!!! | TGGTTTTGAAAACATTGTTT+TGG | + | tig0036379:9025-9044 | Msa1455600:intron | 25.0% |
! | TAGAGAACAACAAAATAAGT+TGG | + | tig0036379:9120-9139 | Msa1455600:CDS | 25.0% |
! | TTCATTTATCAAAATCGATG+TGG | + | tig0036379:9492-9511 | Msa1455600:intron | 25.0% |
! | TATTATAACTCAACTGGATA+TGG | + | tig0036379:9782-9801 | Msa1455600:CDS | 25.0% |
! | ATTATAACTCAACTGGATAT+GGG | + | tig0036379:9783-9802 | Msa1455600:CDS | 25.0% |
! | TAGAATTTGGAAACAAGATT+CGG | - | tig0036379:9972-9991 | None:intergenic | 25.0% |
! | TTGTTTCCAAATTCTAAACT+AGG | + | tig0036379:9976-9995 | Msa1455600:intron | 25.0% |
!! | AATGATCCTAGTTTAGAATT+TGG | - | tig0036379:9985-10004 | None:intergenic | 25.0% |
! | AATGCTTTCATGTATATACT+AGG | + | tig0036379:10174-10193 | Msa1455600:intron | 25.0% |
! | ATGCTTTCATGTATATACTA+GGG | + | tig0036379:10175-10194 | Msa1455600:intron | 25.0% |
!! | TCTGACTTGATATTAACTAA+TGG | + | tig0036379:10444-10463 | Msa1455600:intron | 25.0% |
!! | CTGACTTGATATTAACTAAT+GGG | + | tig0036379:10445-10464 | Msa1455600:intron | 25.0% |
! | AATTTGTGTATTCAATGCAT+TGG | + | tig0036379:10505-10524 | Msa1455600:intron | 25.0% |
! | GCTAATCAGATTATAAGTTA+AGG | - | tig0036379:10610-10629 | None:intergenic | 25.0% |
! | TTTATATAGATGGTCTGATA+TGG | + | tig0036379:10740-10759 | Msa1455600:intron | 25.0% |
! | TTATATAGATGGTCTGATAT+GGG | + | tig0036379:10741-10760 | Msa1455600:intron | 25.0% |
!!! | TTTTTTTTTGGTACAGATCA+AGG | + | tig0036379:11007-11026 | Msa1455600:intron | 25.0% |
!!! | AAGAAATTGTGCGTATTTTT+TGG | - | tig0036379:11213-11232 | None:intergenic | 25.0% |
! | TACGCACAATTTCTTATAAT+AGG | + | tig0036379:11218-11237 | Msa1455600:intron | 25.0% |
! | ACGCACAATTTCTTATAATA+GGG | + | tig0036379:11219-11238 | Msa1455600:intron | 25.0% |
! | ATGTAAGTCTCATTTAAGAA+AGG | - | tig0036379:11504-11523 | None:intergenic | 25.0% |
! | ACTAATAATACGTGATGATA+AGG | - | tig0036379:11722-11741 | None:intergenic | 25.0% |
!! | CATCACGTATTATTAGTTTA+TGG | + | tig0036379:11725-11744 | Msa1455600:three_prime_UTR | 25.0% |
! | GTACTTCCTTGTAAAATATA+TGG | + | tig0036379:11879-11898 | Msa1455600:three_prime_UTR | 25.0% |
TTCTCATATCCAACTTCATA+AGG | + | tig0036379:8050-8069 | Msa1455600:five_prime_UTR | 30.0% | |
TCTCATATCCAACTTCATAA+GGG | + | tig0036379:8051-8070 | Msa1455600:five_prime_UTR | 30.0% | |
TATTACTGCATGTAGAATCA+CGG | - | tig0036379:8083-8102 | None:intergenic | 30.0% | |
ACCTACTTACTTCTAAATCT+AGG | + | tig0036379:8102-8121 | Msa1455600:five_prime_UTR | 30.0% | |
GAGTTAGCAATGTATTTGTT+TGG | + | tig0036379:8411-8430 | Msa1455600:five_prime_UTR | 30.0% | |
GTTAGCAATGTATTTGTTTG+GGG | + | tig0036379:8413-8432 | Msa1455600:five_prime_UTR | 30.0% | |
AAATGCAGAAAACAGAGTTT+GGG | - | tig0036379:8499-8518 | None:intergenic | 30.0% | |
AGAGAAAAATCGAGATCAAA+AGG | + | tig0036379:8546-8565 | Msa1455600:CDS | 30.0% | |
ATTTCTTGCATTTCACAATG+TGG | + | tig0036379:8797-8816 | Msa1455600:intron | 30.0% | |
!! | CAATGTGGTTGGTTTATTAT+AGG | + | tig0036379:8812-8831 | Msa1455600:intron | 30.0% |
!! | AATACTTTGGTGGGTTATTT+AGG | - | tig0036379:8981-9000 | None:intergenic | 30.0% |
! | AACAACAAAATAAGTTGGAG+AGG | + | tig0036379:9125-9144 | Msa1455600:CDS | 30.0% |
! | ACAACAAAATAAGTTGGAGA+GGG | + | tig0036379:9126-9145 | Msa1455600:CDS | 30.0% |
GCAGATTTAGATCTAACAAA+AGG | + | tig0036379:9176-9195 | Msa1455600:CDS | 30.0% | |
! | TCTAGAATATGGAGATCAAA+TGG | + | tig0036379:9274-9293 | Msa1455600:CDS | 30.0% |
! | TTCTGTATATTCAGGTTAGT+TGG | + | tig0036379:9381-9400 | Msa1455600:intron | 30.0% |
TTATAATATGTCGCAACTTC+AGG | - | tig0036379:9770-9789 | None:intergenic | 30.0% | |
TTATAACTCAACTGGATATG+GGG | + | tig0036379:9784-9803 | Msa1455600:CDS | 30.0% | |
! | TAGGATCATTTTATAGCTGA+AGG | + | tig0036379:9995-10014 | Msa1455600:intron | 30.0% |
GTCTATTCTATGTAATGTGT+AGG | - | tig0036379:10087-10106 | None:intergenic | 30.0% | |
TAGGATAAGATAATGCCATA+AGG | - | tig0036379:10119-10138 | None:intergenic | 30.0% | |
TGCTTTCATGTATATACTAG+GGG | + | tig0036379:10176-10195 | Msa1455600:intron | 30.0% | |
ATAATCCTTCTTCTTAATGC+AGG | + | tig0036379:10252-10271 | Msa1455600:intron | 30.0% | |
!! | TTTTCTATAATTTTGGAGGC+CGG | - | tig0036379:10335-10354 | None:intergenic | 30.0% |
! | CGGATTTTCTATAATTTTGG+AGG | - | tig0036379:10339-10358 | None:intergenic | 30.0% |
!!! | AATTTTCATAAAAAGTGCCC+CGG | - | tig0036379:10489-10508 | None:intergenic | 30.0% |
!!! | AGTTTTATTAGATAGTCTGG+AGG | + | tig0036379:10639-10658 | Msa1455600:intron | 30.0% |
! | TTTTTGTAGAATACTCTCTC+TGG | + | tig0036379:10933-10952 | Msa1455600:intron | 30.0% |
TTTACCAAAATCACAGATCA+AGG | + | tig0036379:10974-10993 | Msa1455600:intron | 30.0% | |
AAAACTTGTCTAATACTTCC+AGG | + | tig0036379:11284-11303 | Msa1455600:intron | 30.0% | |
!! | ATGAGACTTACATTGATTCT+AGG | + | tig0036379:11511-11530 | Msa1455600:CDS | 30.0% |
ACATACTATAGTTTAGGAGA+AGG | - | tig0036379:11631-11650 | None:intergenic | 30.0% | |
!! | CTTTTGAGTGGAATTGAATA+TGG | - | tig0036379:11658-11677 | None:intergenic | 30.0% |
ACAGATCAATAACGTGATTA+CGG | - | tig0036379:11941-11960 | None:intergenic | 30.0% | |
! | TTGAGGGGTATAATGGTAAA+AGG | - | tig0036379:8003-8022 | None:intergenic | 35.0% |
GCCTAGATTTAGAAGTAAGT+AGG | - | tig0036379:8106-8125 | None:intergenic | 35.0% | |
! | AATGGTAATGAACGATATCG+CGG | - | tig0036379:8141-8160 | None:intergenic | 35.0% |
TGTTGGAGGAAAATGGATAT+GGG | - | tig0036379:8209-8228 | None:intergenic | 35.0% | |
AATGCAGAAAACAGAGTTTG+GGG | - | tig0036379:8498-8517 | None:intergenic | 35.0% | |
CAAATGCAGAAAACAGAGTT+TGG | - | tig0036379:8500-8519 | None:intergenic | 35.0% | |
GAAAAATCGAGATCAAAAGG+AGG | + | tig0036379:8549-8568 | Msa1455600:CDS | 35.0% | |
GTTTATTGCGTTTGTGATTC+TGG | + | tig0036379:8584-8603 | Msa1455600:CDS | 35.0% | |
AAATTCAGATAAACCCGAAC+CGG | + | tig0036379:8659-8678 | Msa1455600:CDS | 35.0% | |
!! | TATTTTTGATCAATGGCACC+AGG | - | tig0036379:8696-8715 | None:intergenic | 35.0% |
GGTAACCGAGAATGAAAAAA+AGG | - | tig0036379:8774-8793 | None:intergenic | 35.0% | |
AACCGAACTGGATATTGAAT+CGG | + | tig0036379:8898-8917 | Msa1455600:intron | 35.0% | |
TACGGTTCAAATACTTTGGT+GGG | - | tig0036379:8990-9009 | None:intergenic | 35.0% | |
ATGCTACGGTTCAAATACTT+TGG | - | tig0036379:8994-9013 | None:intergenic | 35.0% | |
CCAAATCAAATCACATGCTA+CGG | - | tig0036379:9008-9027 | None:intergenic | 35.0% | |
! | CAACAAAATAAGTTGGAGAG+GGG | + | tig0036379:9127-9146 | Msa1455600:CDS | 35.0% |
ACAAAAGGAATGTATGATGC+CGG | + | tig0036379:9191-9210 | Msa1455600:CDS | 35.0% | |
!!! | CATGAAGTTTGGTTTTCCTA+TGG | + | tig0036379:9220-9239 | Msa1455600:CDS | 35.0% |
ATATACAGAACATTCTCCGA+AGG | - | tig0036379:9371-9390 | None:intergenic | 35.0% | |
GGAGAATGTTCTGTATATTC+AGG | + | tig0036379:9373-9392 | Msa1455600:CDS | 35.0% | |
TTTATCAAAATCGATGTGGC+AGG | + | tig0036379:9496-9515 | Msa1455600:intron | 35.0% | |
TAGACCTGAGTTAATTACTG+AGG | + | tig0036379:9553-9572 | Msa1455600:CDS | 35.0% | |
! | ATAACTGTTTTGCATGCTTG+AGG | - | tig0036379:9703-9722 | None:intergenic | 35.0% |
GCGACATATTATAACTCAAC+TGG | + | tig0036379:9776-9795 | Msa1455600:CDS | 35.0% | |
! | GAGCATAATCTTCTCCATTT+TGG | - | tig0036379:9883-9902 | None:intergenic | 35.0% |
GGAGAAGATTATGCTCAATT+TGG | + | tig0036379:9887-9906 | Msa1455600:CDS | 35.0% | |
ATAGACTCAATCAAGCCTTA+TGG | + | tig0036379:10101-10120 | Msa1455600:intron | 35.0% | |
CAAAACCTGCATTAAGAAGA+AGG | - | tig0036379:10260-10279 | None:intergenic | 35.0% | |
! | ATCTAGAGTAAGCTTCTTCA+AGG | + | tig0036379:10282-10301 | Msa1455600:CDS | 35.0% |
!! | CTTTCAAGTTCATATGGTTC+CGG | + | tig0036379:10313-10332 | Msa1455600:CDS | 35.0% |
!! | CGGCGGATTTTCTATAATTT+TGG | - | tig0036379:10342-10361 | None:intergenic | 35.0% |
AAATTATAGAAAATCCGCCG+AGG | + | tig0036379:10342-10361 | Msa1455600:CDS | 35.0% | |
!!! | ACTATCAGTTCTGCTTTTTG+TGG | - | tig0036379:10404-10423 | None:intergenic | 35.0% |
ATCAAGTCAGATAGCATTCA+AGG | - | tig0036379:10435-10454 | None:intergenic | 35.0% | |
!!! | ATTTTCATAAAAAGTGCCCC+GGG | - | tig0036379:10488-10507 | None:intergenic | 35.0% |
! | AACTCCTTGATCTGTGATTT+TGG | - | tig0036379:10981-11000 | None:intergenic | 35.0% |
ATAGGGATCAGAGATAGTAT+CGG | + | tig0036379:11236-11255 | Msa1455600:intron | 35.0% | |
ATTCCTGCTAATGCAAAAAC+TGG | + | tig0036379:11402-11421 | Msa1455600:CDS | 35.0% | |
TAATGCAAAAACTGGTTGCA+AGG | + | tig0036379:11410-11429 | Msa1455600:CDS | 35.0% | |
TCTAGGAACAATTCTATGCA+AGG | + | tig0036379:11528-11547 | Msa1455600:CDS | 35.0% | |
TATAACAGTGCTGTCATAGT+TGG | + | tig0036379:11564-11583 | Msa1455600:CDS | 35.0% | |
AAGTTTAGTCACCACATCTT+CGG | + | tig0036379:11596-11615 | Msa1455600:CDS | 35.0% | |
AGTTTAGGAGAAGGATTGAA+GGG | - | tig0036379:11622-11641 | None:intergenic | 35.0% | |
TAGTTTAGGAGAAGGATTGA+AGG | - | tig0036379:11623-11642 | None:intergenic | 35.0% | |
GGAGCTACATACTATAGTTT+AGG | - | tig0036379:11637-11656 | None:intergenic | 35.0% | |
AATATATTGAGTGTGAACCG+TGG | + | tig0036379:11769-11788 | Msa1455600:three_prime_UTR | 35.0% | |
GTAATCACGTTATTGATCTG+TGG | + | tig0036379:11940-11959 | Msa1455600:three_prime_UTR | 35.0% | |
!! | GTGGATTTTGAGGGGTATAA+TGG | - | tig0036379:8010-8029 | None:intergenic | 40.0% |
!! | TTTTGTCGGTGGATTTTGAG+GGG | - | tig0036379:8018-8037 | None:intergenic | 40.0% |
!! | GTTTTGTCGGTGGATTTTGA+GGG | - | tig0036379:8019-8038 | None:intergenic | 40.0% |
!! | TGTTTTGTCGGTGGATTTTG+AGG | - | tig0036379:8020-8039 | None:intergenic | 40.0% |
!!! | AACGTGGTGTTGTGTTTTGT+CGG | - | tig0036379:8032-8051 | None:intergenic | 40.0% |
TGAAGTTGGATATGAGAACG+TGG | - | tig0036379:8048-8067 | None:intergenic | 40.0% | |
GGAAATGTCCCTTATGAAGT+TGG | - | tig0036379:8062-8081 | None:intergenic | 40.0% | |
! | ATGGTAATGAACGATATCGC+GGG | - | tig0036379:8140-8159 | None:intergenic | 40.0% |
GTGTTGGAGGAAAATGGATA+TGG | - | tig0036379:8210-8229 | None:intergenic | 40.0% | |
AGTATACTCTGTCGTTGTGT+TGG | - | tig0036379:8226-8245 | None:intergenic | 40.0% | |
AACGACAGAGTATACTAGCT+AGG | + | tig0036379:8230-8249 | Msa1455600:five_prime_UTR | 40.0% | |
GAGTATACTAGCTAGGTTGT+TGG | + | tig0036379:8237-8256 | Msa1455600:five_prime_UTR | 40.0% | |
ATACTAGCTAGGTTGTTGGT+TGG | + | tig0036379:8241-8260 | Msa1455600:five_prime_UTR | 40.0% | |
TCAATGCAGTTTCAGATCGA+TGG | - | tig0036379:8303-8322 | None:intergenic | 40.0% | |
!! | GAAAACAGAGTTTGGGGTTT+TGG | - | tig0036379:8492-8511 | None:intergenic | 40.0% |
AGATCAAAAGGAGGATGTTG+TGG | + | tig0036379:8558-8577 | Msa1455600:CDS | 40.0% | |
CTTGCATTTCACAATGTGGT+TGG | + | tig0036379:8801-8820 | Msa1455600:intron | 40.0% | |
!! | TGCCGATTCAATATCCAGTT+CGG | - | tig0036379:8903-8922 | None:intergenic | 40.0% |
TATTGAATCGGCAAGATCTC+TGG | + | tig0036379:8910-8929 | Msa1455600:intron | 40.0% | |
!! | ACTTTGGTGGGTTATTTAGG+CGG | - | tig0036379:8978-8997 | None:intergenic | 40.0% |
CTACGGTTCAAATACTTTGG+TGG | - | tig0036379:8991-9010 | None:intergenic | 40.0% | |
CCGTAGCATGTGATTTGATT+TGG | + | tig0036379:9005-9024 | Msa1455600:intron | 40.0% | |
! | TGCCCATTCTAGTTGGTTAA+CGG | + | tig0036379:9062-9081 | Msa1455600:intron | 40.0% |
GACCGTTAACCAACTAGAAT+GGG | - | tig0036379:9067-9086 | None:intergenic | 40.0% | |
TGACCGTTAACCAACTAGAA+TGG | - | tig0036379:9068-9087 | None:intergenic | 40.0% | |
TGTTATTCATGTGATGCAGC+TGG | + | tig0036379:9092-9111 | Msa1455600:intron | 40.0% | |
! | AATAAGTTGGAGAGGGGATT+CGG | + | tig0036379:9133-9152 | Msa1455600:CDS | 40.0% |
CAAAAGGAATGTATGATGCC+GGG | + | tig0036379:9192-9211 | Msa1455600:CDS | 40.0% | |
AAAAGGAATGTATGATGCCG+GGG | + | tig0036379:9193-9212 | Msa1455600:CDS | 40.0% | |
!! | TCGTGGGCAATTCTAGAATA+TGG | + | tig0036379:9263-9282 | Msa1455600:CDS | 40.0% |
!! | AATCTTGTGCTGGTTCCAAT+TGG | - | tig0036379:9310-9329 | None:intergenic | 40.0% |
CGTTCCTCAGTAATTAACTC+AGG | - | tig0036379:9560-9579 | None:intergenic | 40.0% | |
GATACGTTCACTTGTAAGAG+GGG | - | tig0036379:9584-9603 | None:intergenic | 40.0% | |
GGATACGTTCACTTGTAAGA+GGG | - | tig0036379:9585-9604 | None:intergenic | 40.0% | |
AGGATACGTTCACTTGTAAG+AGG | - | tig0036379:9586-9605 | None:intergenic | 40.0% | |
! | ATATGGGGATGAGCTTTTGT+GGG | + | tig0036379:9799-9818 | Msa1455600:CDS | 40.0% |
AGTAAGCTTCTTCAAGGCAA+AGG | + | tig0036379:10288-10307 | Msa1455600:CDS | 40.0% | |
GTAAGCTTCTTCAAGGCAAA+GGG | + | tig0036379:10289-10308 | Msa1455600:CDS | 40.0% | |
!! | AAGGGCCTTTCAAGTTCATA+TGG | + | tig0036379:10307-10326 | Msa1455600:CDS | 40.0% |
CGGAACCATATGAACTTGAA+AGG | - | tig0036379:10315-10334 | None:intergenic | 40.0% | |
!!! | TTTTCATAAAAAGTGCCCCG+GGG | - | tig0036379:10487-10506 | None:intergenic | 40.0% |
AACGATCGTGACACTCTTTA+AGG | - | tig0036379:10579-10598 | None:intergenic | 40.0% | |
TCGAAGATCTGATGGTTTGA+AGG | - | tig0036379:10878-10897 | None:intergenic | 40.0% | |
ATGAATGCATACCTGAGATC+TGG | - | tig0036379:10908-10927 | None:intergenic | 40.0% | |
! | TCCTCAGCATATGAGTTTTC+TGG | + | tig0036379:11329-11348 | Msa1455600:CDS | 40.0% |
ACCAGAAAACTCATATGCTG+AGG | - | tig0036379:11333-11352 | None:intergenic | 40.0% | |
! | TCAGCATATGAGTTTTCTGG+TGG | + | tig0036379:11332-11351 | Msa1455600:CDS | 40.0% |
!! | CAGCATATGAGTTTTCTGGT+GGG | + | tig0036379:11333-11352 | Msa1455600:CDS | 40.0% |
!! | ATGAGTTTTCTGGTGGGATA+TGG | + | tig0036379:11339-11358 | Msa1455600:CDS | 40.0% |
CTCTGTGATGCACAAATTGT+GGG | - | tig0036379:11374-11393 | None:intergenic | 40.0% | |
! | CAACCAGTTTTTGCATTAGC+AGG | - | tig0036379:11408-11427 | None:intergenic | 40.0% |
CAAAAACTGGTTGCAAGGAT+GGG | + | tig0036379:11415-11434 | Msa1455600:CDS | 40.0% | |
ACAGCACTGTTATATGTGCT+TGG | - | tig0036379:11558-11577 | None:intergenic | 40.0% | |
!! | CGACGCGGATTTAAGTTTTA+TGG | + | tig0036379:11684-11703 | Msa1455600:three_prime_UTR | 40.0% |
CAATAGAATAAGCTCAGAGC+TGG | - | tig0036379:11860-11879 | None:intergenic | 40.0% | |
! | TTGACTCATGCTAGCTTCGT+CGG | - | tig0036379:7966-7985 | None:intergenic | 45.0% |
GTCGTTGTGTTGGAGGAAAA+TGG | - | tig0036379:8216-8235 | None:intergenic | 45.0% | |
ATACTCTGTCGTTGTGTTGG+AGG | - | tig0036379:8223-8242 | None:intergenic | 45.0% | |
CAAAAGGAGGATGTTGTGGT+TGG | + | tig0036379:8562-8581 | Msa1455600:CDS | 45.0% | |
!! | GTTTGTGATTCTGGCTCTTG+TGG | + | tig0036379:8593-8612 | Msa1455600:CDS | 45.0% |
! | TTTTGATCAATGGCACCAGG+AGG | - | tig0036379:8693-8712 | None:intergenic | 45.0% |
ATCGTGGTTTCATCGCAGTT+TGG | - | tig0036379:8951-8970 | None:intergenic | 45.0% | |
TTATTTAGGCGGCTCAATCG+TGG | - | tig0036379:8967-8986 | None:intergenic | 45.0% | |
ATGTTGCTGCCCATTCTAGT+TGG | + | tig0036379:9055-9074 | Msa1455600:intron | 45.0% | |
ACCAAACTTCATGTGATCCC+CGG | - | tig0036379:9213-9232 | None:intergenic | 45.0% | |
ACTGAGGCAGTAAAAGCCAT+AGG | - | tig0036379:9239-9258 | None:intergenic | 45.0% | |
GGAGATCAAATGGATGCTGT+TGG | + | tig0036379:9284-9303 | Msa1455600:CDS | 45.0% | |
AATGGATGCTGTTGGCCAAT+TGG | + | tig0036379:9292-9311 | Msa1455600:CDS | 45.0% | |
AACCAGCACAAGATTCTCTC+AGG | + | tig0036379:9315-9334 | Msa1455600:CDS | 45.0% | |
TCTCGTCAATGCTCATCCTT+CGG | + | tig0036379:9352-9371 | Msa1455600:CDS | 45.0% | |
TCAAAATCGATGTGGCAGGT+TGG | + | tig0036379:9500-9519 | Msa1455600:intron | 45.0% | |
CAACACTTGTGATCTGCAAC+AGG | - | tig0036379:9530-9549 | None:intergenic | 45.0% | |
CTGTTGCAGATCACAAGTGT+TGG | + | tig0036379:9528-9547 | Msa1455600:CDS | 45.0% | |
TTCAGCTGCAACATCTGATC+CGG | - | tig0036379:9612-9631 | None:intergenic | 45.0% | |
AGCAATGGCATCAGCATCTT+TGG | + | tig0036379:9640-9659 | Msa1455600:CDS | 45.0% | |
! | ACTTTTGCGGACAAGCATAG+AGG | + | tig0036379:9725-9744 | Msa1455600:CDS | 45.0% |
! | GATATGGGGATGAGCTTTTG+TGG | + | tig0036379:9798-9817 | Msa1455600:CDS | 45.0% |
AGGAATCATCACCTGTAGCA+TGG | - | tig0036379:9841-9860 | None:intergenic | 45.0% | |
TCCTACCTTCAGTATGTGAC+TGG | + | tig0036379:9857-9876 | Msa1455600:CDS | 45.0% | |
TTTGGCCAGTCACATACTGA+AGG | - | tig0036379:9865-9884 | None:intergenic | 45.0% | |
! | CAGTATGTGACTGGCCAAAA+TGG | + | tig0036379:9866-9885 | Msa1455600:CDS | 45.0% |
AGCTCTTCATACCTGAGTTC+CGG | - | tig0036379:9948-9967 | None:intergenic | 45.0% | |
AAGACCACACATTACAGCCT+CGG | - | tig0036379:10362-10381 | None:intergenic | 45.0% | |
!!! | GTTCTGCTTTTTGTGGCTGT+TGG | - | tig0036379:10397-10416 | None:intergenic | 45.0% |
!! | TTTCATAAAAAGTGCCCCGG+GGG | - | tig0036379:10486-10505 | None:intergenic | 45.0% |
GTCTGGAGGAACACAAACTA+TGG | + | tig0036379:10653-10672 | Msa1455600:intron | 45.0% | |
GTCTGATATGGGTGAGTGAA+TGG | + | tig0036379:10752-10771 | Msa1455600:CDS | 45.0% | |
GCTAAGAATGCAGATGCAAC+AGG | - | tig0036379:10793-10812 | None:intergenic | 45.0% | |
GCAAAGTCTCGAAGATCTGA+TGG | - | tig0036379:10886-10905 | None:intergenic | 45.0% | |
TTCCAGGCTGATTACGTGTT+GGG | + | tig0036379:11300-11319 | Msa1455600:intron | 45.0% | |
CCTCTGTGATGCACAAATTG+TGG | - | tig0036379:11375-11394 | None:intergenic | 45.0% | |
CCACAATTTGTGCATCACAG+AGG | + | tig0036379:11372-11391 | Msa1455600:CDS | 45.0% | |
GCAAAAACTGGTTGCAAGGA+TGG | + | tig0036379:11414-11433 | Msa1455600:CDS | 45.0% | |
AGCTACATTGGGATTCGGAT+CGG | - | tig0036379:11460-11479 | None:intergenic | 45.0% | |
CCAGTAGCTACATTGGGATT+CGG | - | tig0036379:11465-11484 | None:intergenic | 45.0% | |
AGTGCTCCAGTAGCTACATT+GGG | - | tig0036379:11471-11490 | None:intergenic | 45.0% | |
AAGTGCTCCAGTAGCTACAT+TGG | - | tig0036379:11472-11491 | None:intergenic | 45.0% | |
ACTCAAAAGAAGTTGCGACG+CGG | + | tig0036379:11669-11688 | Msa1455600:three_prime_UTR | 45.0% | |
ACTAACCTATCCAGACACCA+CGG | - | tig0036379:11789-11808 | None:intergenic | 45.0% | |
!!! | GTGGTGTTGTGTTTTGTCGG+TGG | - | tig0036379:8029-8048 | None:intergenic | 50.0% |
ATGGGGAGAAGGAGTCGAAA+TGG | - | tig0036379:8159-8178 | None:intergenic | 50.0% | |
!! | GTGATTCTGGCTCTTGTGGT+CGG | + | tig0036379:8597-8616 | Msa1455600:CDS | 50.0% |
TCGGCAAGATCTCTGGATCA+TGG | + | tig0036379:8917-8936 | Msa1455600:intron | 50.0% | |
TTACTGCCTCAGTGCTATCG+TGG | + | tig0036379:9246-9265 | Msa1455600:CDS | 50.0% | |
TACTGCCTCAGTGCTATCGT+GGG | + | tig0036379:9247-9266 | Msa1455600:CDS | 50.0% | |
AATTGCCCACGATAGCACTG+AGG | - | tig0036379:9255-9274 | None:intergenic | 50.0% | |
CACCTGAGAGAATCTTGTGC+TGG | - | tig0036379:9320-9339 | None:intergenic | 50.0% | |
CAGCACAAGATTCTCTCAGG+TGG | + | tig0036379:9318-9337 | Msa1455600:CDS | 50.0% | |
CAAGTGAACGTATCCTGTCC+CGG | + | tig0036379:9590-9609 | Msa1455600:CDS | 50.0% | |
TCAGCTGCAACATCTGATCC+GGG | - | tig0036379:9611-9630 | None:intergenic | 50.0% | |
AGCTGAAACTGCAGCAGCAA+TGG | + | tig0036379:9625-9644 | Msa1455600:CDS | 50.0% | |
GCCAGTCACATACTGAAGGT+AGG | - | tig0036379:9861-9880 | None:intergenic | 50.0% | |
CTCAATTTGGAAGCCCAACC+TGG | + | tig0036379:9900-9919 | Msa1455600:CDS | 50.0% | |
AAGCCCAACCTGGTTCAGTT+GGG | + | tig0036379:9910-9929 | Msa1455600:CDS | 50.0% | |
TGTCCCAACTGAACCAGGTT+GGG | - | tig0036379:9916-9935 | None:intergenic | 50.0% | |
TTGTCCCAACTGAACCAGGT+TGG | - | tig0036379:9917-9936 | None:intergenic | 50.0% | |
! | CTTGTTGTCCCAACTGAACC+AGG | - | tig0036379:9921-9940 | None:intergenic | 50.0% |
AGTTGGGACAACAAGCTTGC+CGG | + | tig0036379:9926-9945 | Msa1455600:CDS | 50.0% | |
TTTGTGGCTGTTGGAGAGTC+TGG | - | tig0036379:10388-10407 | None:intergenic | 50.0% | |
GAAATGCTAATGAGTGCCCC+CGG | + | tig0036379:10467-10486 | Msa1455600:intron | 50.0% | |
AAATGCTAATGAGTGCCCCC+GGG | + | tig0036379:10468-10487 | Msa1455600:intron | 50.0% | |
TCGAGACTTTGCCAGATCTC+AGG | + | tig0036379:10894-10913 | Msa1455600:CDS | 50.0% | |
CTTCCAGGCTGATTACGTGT+TGG | + | tig0036379:11299-11318 | Msa1455600:intron | 50.0% | |
AAACTGGTTGCAAGGATGGG+TGG | + | tig0036379:11418-11437 | Msa1455600:CDS | 50.0% | |
CCGAATCCCAATGTAGCTAC+TGG | + | tig0036379:11462-11481 | Msa1455600:CDS | 50.0% | |
! | GTAGCTACTGGAGCACTTGT+TGG | + | tig0036379:11474-11493 | Msa1455600:CDS | 50.0% |
! | GCGTCGCAACTTCTTTTGAG+TGG | - | tig0036379:11670-11689 | None:intergenic | 50.0% |
GAATAAGCTCAGAGCTGGTG+AGG | - | tig0036379:11855-11874 | None:intergenic | 50.0% | |
! | CTCATGCTAGCTTCGTCGGT+GGG | - | tig0036379:7962-7981 | None:intergenic | 55.0% |
! | ACTCATGCTAGCTTCGTCGG+TGG | - | tig0036379:7963-7982 | None:intergenic | 55.0% |
! | GCTAGGTTGTTGGTTGGTGC+TGG | + | tig0036379:8247-8266 | Msa1455600:five_prime_UTR | 55.0% |
! | GATAAACCCGAACCGGTTCC+CGG | + | tig0036379:8666-8685 | Msa1455600:CDS | 55.0% |
ATCAATGGCACCAGGAGGAC+CGG | - | tig0036379:8688-8707 | None:intergenic | 55.0% | |
GAGAGGGGATTCGGCTCTTA+AGG | + | tig0036379:9142-9161 | Msa1455600:CDS | 55.0% | |
GGGGATTCGGCTCTTAAGGA+TGG | + | tig0036379:9146-9165 | Msa1455600:CDS | 55.0% | |
GCCGGGGATCACATGAAGTT+TGG | + | tig0036379:9209-9228 | Msa1455600:CDS | 55.0% | |
TGCAACATCTGATCCGGGAC+AGG | - | tig0036379:9606-9625 | None:intergenic | 55.0% | |
! | AGCTTTTGTGGGCAGCTACC+TGG | + | tig0036379:9810-9829 | Msa1455600:CDS | 55.0% |
!! | ACCTGGCTCTACCATGCTAC+AGG | + | tig0036379:9827-9846 | Msa1455600:CDS | 55.0% |
ACCTGTAGCATGGTAGAGCC+AGG | - | tig0036379:9831-9850 | None:intergenic | 55.0% | |
GAAGCCCAACCTGGTTCAGT+TGG | + | tig0036379:9909-9928 | Msa1455600:CDS | 55.0% | |
CAACAAGCTTGCCGGAACTC+AGG | + | tig0036379:9934-9953 | Msa1455600:CDS | 55.0% | |
ACCACACATTACAGCCTCGG+CGG | - | tig0036379:10359-10378 | None:intergenic | 55.0% | |
AATGCTAATGAGTGCCCCCG+GGG | + | tig0036379:10469-10488 | Msa1455600:intron | 55.0% | |
TGCCCAACACGTAATCAGCC+TGG | - | tig0036379:11305-11324 | None:intergenic | 55.0% | |
! | GCTACTGGAGCACTTGTTGG+TGG | + | tig0036379:11477-11496 | Msa1455600:CDS | 55.0% |
GGATTGAAGGGCCGAAGATG+TGG | - | tig0036379:11610-11629 | None:intergenic | 55.0% | |
TGAGTGTGAACCGTGGTGTC+TGG | + | tig0036379:11776-11795 | Msa1455600:three_prime_UTR | 55.0% | |
GTGAACCGTGGTGTCTGGAT+AGG | + | tig0036379:11781-11800 | Msa1455600:three_prime_UTR | 55.0% | |
TGCGGCGAGAAATGGGGAGA+AGG | - | tig0036379:8170-8189 | None:intergenic | 60.0% | |
TCCCCATTTCTCGCCGCAAC+CGG | + | tig0036379:8172-8191 | Msa1455600:five_prime_UTR | 60.0% | |
ACCCGGTTGCGGCGAGAAAT+GGG | - | tig0036379:8177-8196 | None:intergenic | 60.0% | |
ATTTCTCGCCGCAACCGGGT+CGG | + | tig0036379:8177-8196 | Msa1455600:five_prime_UTR | 60.0% | |
GATATGGGTCTGACCCGACC+CGG | - | tig0036379:8194-8213 | None:intergenic | 60.0% | |
TCAATGGCACCAGGAGGACC+GGG | - | tig0036379:8687-8706 | None:intergenic | 60.0% | |
TCCGCCGAGGCTGTAATGTG+TGG | + | tig0036379:10355-10374 | Msa1455600:CDS | 60.0% | |
GTTGCAAGGATGGGTGGCAG+TGG | + | tig0036379:11424-11443 | Msa1455600:CDS | 60.0% | |
CCCGGTTGCGGCGAGAAATG+GGG | - | tig0036379:8176-8195 | None:intergenic | 65.0% | |
CCCCATTTCTCGCCGCAACC+GGG | + | tig0036379:8173-8192 | Msa1455600:five_prime_UTR | 65.0% | |
GACCCGGTTGCGGCGAGAAA+TGG | - | tig0036379:8178-8197 | None:intergenic | 65.0% | |
TTTCTCGCCGCAACCGGGTC+GGG | + | tig0036379:8178-8197 | Msa1455600:five_prime_UTR | 65.0% | |
AGGAGGACCGGGAACCGGTT+CGG | - | tig0036379:8676-8695 | None:intergenic | 65.0% | |
GGTCTGACCCGACCCGGTTG+CGG | - | tig0036379:8188-8207 | None:intergenic | 70.0% | |
! | GGAGGACCGGGAACCGGTTC+GGG | - | tig0036379:8675-8694 | None:intergenic | 70.0% |
! | GAACCGGTTCCCGGTCCTCC+TGG | + | tig0036379:8675-8694 | Msa1455600:CDS | 70.0% |
GCACCAGGAGGACCGGGAAC+CGG | - | tig0036379:8681-8700 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0036379 | gene | 7955 | 11988 | 7955 | ID=Msa1455600;Name=Msa1455600 |
tig0036379 | mRNA | 7955 | 11988 | 7955 | ID=Msa1455600-mRNA-1;Parent=Msa1455600;Name=Msa1455600-mRNA-1;_AED=0.03;_eAED=0.03;_QI=588|1|1|1|1|1|6|350|529 |
tig0036379 | exon | 7955 | 8762 | 7955 | ID=Msa1455600-mRNA-1:exon:20327;Parent=Msa1455600-mRNA-1 |
tig0036379 | exon | 9111 | 9394 | 9111 | ID=Msa1455600-mRNA-1:exon:20328;Parent=Msa1455600-mRNA-1 |
tig0036379 | exon | 9518 | 9955 | 9518 | ID=Msa1455600-mRNA-1:exon:20329;Parent=Msa1455600-mRNA-1 |
tig0036379 | exon | 10274 | 10421 | 10274 | ID=Msa1455600-mRNA-1:exon:20330;Parent=Msa1455600-mRNA-1 |
tig0036379 | exon | 10749 | 10915 | 10749 | ID=Msa1455600-mRNA-1:exon:20331;Parent=Msa1455600-mRNA-1 |
tig0036379 | exon | 11306 | 11988 | 11306 | ID=Msa1455600-mRNA-1:exon:20332;Parent=Msa1455600-mRNA-1 |
tig0036379 | five_prime_UTR | 7955 | 8542 | 7955 | ID=Msa1455600-mRNA-1:five_prime_utr;Parent=Msa1455600-mRNA-1 |
tig0036379 | CDS | 8543 | 8762 | 8543 | ID=Msa1455600-mRNA-1:cds;Parent=Msa1455600-mRNA-1 |
tig0036379 | CDS | 9111 | 9394 | 9111 | ID=Msa1455600-mRNA-1:cds;Parent=Msa1455600-mRNA-1 |
tig0036379 | CDS | 9518 | 9955 | 9518 | ID=Msa1455600-mRNA-1:cds;Parent=Msa1455600-mRNA-1 |
tig0036379 | CDS | 10274 | 10421 | 10274 | ID=Msa1455600-mRNA-1:cds;Parent=Msa1455600-mRNA-1 |
tig0036379 | CDS | 10749 | 10915 | 10749 | ID=Msa1455600-mRNA-1:cds;Parent=Msa1455600-mRNA-1 |
tig0036379 | CDS | 11306 | 11638 | 11306 | ID=Msa1455600-mRNA-1:cds;Parent=Msa1455600-mRNA-1 |
tig0036379 | three_prime_UTR | 11639 | 11988 | 11639 | ID=Msa1455600-mRNA-1:three_prime_utr;Parent=Msa1455600-mRNA-1 |
Gene Sequence |
Protein sequence |