AlfalfaGEDB | Msa0479390

M. sativa cultivar zhongmu-4 / Msa0479390

KEGG: K01179
GO: -
PFAM: PF00759.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0479390	XP_003603741.2	99.622	529	2	0	1	529	1	529	0.0	1095

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0479390	sp\|Q69SG5\|GUN24_ORYSJ	65.909	528	175	3	5	529	3	528	0.0	714

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0479390	G7J4Q1	99.622	529	2	0	1	529	1	529	0.0	1095

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0385150	Msa0479390	0.947321	8.447385e-106	-8.615850e-47
Msa0385730	Msa0479390	0.802765	4.802564e-49	-8.615850e-47
Msa0435480	Msa0479390	0.950263	2.363644e-108	-8.615850e-47
Msa0479390	Msa0799450	0.804815	1.801907e-49	-8.615850e-47
Msa0479390	Msa1455600	0.987126	3.802482e-169	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0479390	MtrunA17_Chr3g0142501	99.622	529	2	0	1	529	1	529	0.0	1095
Msa0479390	MtrunA17_Chr8g0372031	62.330	515	191	1	14	528	23	534	0.0	638
Msa0479390	MtrunA17_Chr5g0439311	44.798	471	246	9	58	519	32	497	5.18e-138	409
Msa0479390	MtrunA17_Chr4g0038131	43.154	482	255	7	58	528	29	502	3.11e-136	408
Msa0479390	MtrunA17_Chr8g0388051	46.482	469	237	10	58	518	29	491	2.21e-135	406
Msa0479390	MtrunA17_Chr3g0119371	43.524	471	252	9	58	519	41	506	6.17e-130	389
Msa0479390	MtrunA17_Chr1g0164201	44.563	469	239	10	58	518	26	481	1.10e-126	379
Msa0479390	MtrunA17_Chr5g0397201	43.644	472	245	7	58	523	41	497	5.32e-125	375
Msa0479390	MtrunA17_Chr3g0145261	42.827	474	250	9	56	519	23	485	2.52e-122	368
Msa0479390	MtrunA17_Chr3g0119821	42.004	469	253	8	56	516	34	491	7.87e-122	367

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0479390	AT1G19940.2	68.371	528	154	4	1	528	1	515	0.0	709
Msa0479390	AT1G19940.1	68.371	528	154	4	1	528	1	515	0.0	709
Msa0479390	AT1G75680.1	69.187	529	157	5	1	528	1	524	0.0	708
Msa0479390	AT1G19940.3	65.952	420	130	4	1	420	1	407	0.0	546
Msa0479390	AT4G11050.2	45.798	476	244	9	58	525	27	496	1.65e-139	414
Msa0479390	AT4G11050.3	46.008	476	243	10	58	525	27	496	9.95e-139	415
Msa0479390	AT4G11050.1	46.008	476	243	10	58	525	27	496	1.11e-138	415
Msa0479390	AT1G64390.1	44.676	479	251	9	58	528	26	498	1.54e-136	409
Msa0479390	AT2G32990.1	43.644	472	244	10	58	516	40	502	3.82e-131	392
Msa0479390	AT2G44540.1	44.397	473	247	7	52	518	28	490	1.71e-128	384

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Find 181 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAATGTATGATGCCG+GGG	0.628087	3_3:+84379593	Msa0479390:CDS
AAACTGGTTGCAAGGATGGG+TGG	0.621140	3_3:+84381817	Msa0479390:CDS
AAATGCAGAAAACAGAGTTT+GGG	0.396742	3_3:-84378896	None:intergenic
AAATTATAGAAAATCCGCCG+AGG	0.730261	3_3:+84380742	Msa0479390:CDS
AAATTCAGATAAACCCGAAC+CGG	0.495107	3_3:+84379059	Msa0479390:CDS
AACAACAAAATAAGTTGGAG+AGG	0.494998	3_3:+84379525	Msa0479390:CDS
AACCAGCACAAGATTCTCTC+AGG	0.525412	3_3:+84379715	Msa0479390:CDS
AACGACAGAGTATACTAGCT+AGG	0.630471	3_3:+84378632	Msa0479390:five_prime_UTR
AAGACCACACATTACAGCCT+CGG	0.582653	3_3:-84380759	None:intergenic
AAGCCCAACCTGGTTCAGTT+GGG	0.506162	3_3:+84380310	Msa0479390:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTCATATCCAACTTCATA+AGG	+	chr3_3:84378452-84378471	Msa0479390:five_prime_UTR	30.0%
TCTCATATCCAACTTCATAA+GGG	+	chr3_3:84378453-84378472	Msa0479390:five_prime_UTR	30.0%
CCTAGATTTAGAAGTAAGTA+GGG	-	chr3_3:84378507-84378526	None:intergenic	30.0%
GAGTTAGCAATGTATTTGTT+TGG	+	chr3_3:84378813-84378832	Msa0479390:five_prime_UTR	30.0%
GTTAGCAATGTATTTGTTTG+GGG	+	chr3_3:84378815-84378834	Msa0479390:five_prime_UTR	30.0%
AAATGCAGAAAACAGAGTTT+GGG	-	chr3_3:84378899-84378918	None:intergenic	30.0%
AGAGAAAAATCGAGATCAAA+AGG	+	chr3_3:84378946-84378965	Msa0479390:CDS	30.0%
ATTTCTTGCATTTCACAATG+TGG	+	chr3_3:84379197-84379216	Msa0479390:intron	30.0%
GCAGATTTAGATCTAACAAA+AGG	+	chr3_3:84379576-84379595	Msa0479390:CDS	30.0%
TTATAATATGTCGCAACTTC+AGG	-	chr3_3:84380170-84380189	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	84378357	84382387	84378357	ID=Msa0479390;Name=Msa0479390
chr3_3	mRNA	84378357	84382387	84378357	ID=Msa0479390-mRNA-1;Parent=Msa0479390;Name=Msa0479390-mRNA-1;_AED=0.03;_eAED=0.03;_QI=586\|1\|1\|1\|1\|1\|6\|350\|529
chr3_3	exon	84378357	84379162	84378357	ID=Msa0479390-mRNA-1:exon:23910;Parent=Msa0479390-mRNA-1
chr3_3	exon	84379511	84379794	84379511	ID=Msa0479390-mRNA-1:exon:23911;Parent=Msa0479390-mRNA-1
chr3_3	exon	84379918	84380355	84379918	ID=Msa0479390-mRNA-1:exon:23912;Parent=Msa0479390-mRNA-1
chr3_3	exon	84380674	84380821	84380674	ID=Msa0479390-mRNA-1:exon:23913;Parent=Msa0479390-mRNA-1
chr3_3	exon	84381149	84381315	84381149	ID=Msa0479390-mRNA-1:exon:23914;Parent=Msa0479390-mRNA-1
chr3_3	exon	84381705	84382387	84381705	ID=Msa0479390-mRNA-1:exon:23915;Parent=Msa0479390-mRNA-1
chr3_3	five_prime_UTR	84378357	84378942	84378357	ID=Msa0479390-mRNA-1:five_prime_utr;Parent=Msa0479390-mRNA-1
chr3_3	CDS	84378943	84379162	84378943	ID=Msa0479390-mRNA-1:cds;Parent=Msa0479390-mRNA-1
chr3_3	CDS	84379511	84379794	84379511	ID=Msa0479390-mRNA-1:cds;Parent=Msa0479390-mRNA-1
chr3_3	CDS	84379918	84380355	84379918	ID=Msa0479390-mRNA-1:cds;Parent=Msa0479390-mRNA-1
chr3_3	CDS	84380674	84380821	84380674	ID=Msa0479390-mRNA-1:cds;Parent=Msa0479390-mRNA-1
chr3_3	CDS	84381149	84381315	84381149	ID=Msa0479390-mRNA-1:cds;Parent=Msa0479390-mRNA-1
chr3_3	CDS	84381705	84382037	84381705	ID=Msa0479390-mRNA-1:cds;Parent=Msa0479390-mRNA-1
chr3_3	three_prime_UTR	84382038	84382387	84382038	ID=Msa0479390-mRNA-1:three_prime_utr;Parent=Msa0479390-mRNA-1

Gene Sequence

>Msa0479390

ATGAGAGAAAAATCGAGATCAAAAGGAGGATGTTGTGGTTGGTTTATTGCGTTTGTGATTCTGGCTCTTGTGGTCGGTGCTATTGTTTATGCTGTTAAGAAGAAAATCGATAACTCAAATTCAGATAAACCCGAACCGGTTCCCGGTCCTCCTGGTGCCATTGATCAAAAATATGCTTCTGCTCTCAAAACTGCAATGCAATTCTTCGACGTGCAAAAATCTGGCAAGTTAGAGAACAACAAAATAAGTTGGAGAGGGGATTCGGCTCTTAAGGATGGAAAGCAAGCAGATTTAGATCTAACAAAAGGAATGTATGATGCCGGGGATCACATGAAGTTTGGTTTTCCTATGGCTTTTACTGCCTCAGTGCTATCGTGGGCAATTCTAGAATATGGAGATCAAATGGATGCTGTTGGCCAATTGGAACCAGCACAAGATTCTCTCAGGTGGATCACTGATTTTCTCGTCAATGCTCATCCTTCGGAGAATGTTCTGTATATTCAGGTTGGTGATCCTGTTGCAGATCACAAGTGTTGGAATAGACCTGAGTTAATTACTGAGGAACGACCCCTCTTACAAGTGAACGTATCCTGTCCCGGATCAGATGTTGCAGCTGAAACTGCAGCAGCAATGGCATCAGCATCTTTGGTCTTCAAAAAGTCAGATGCTACATATTCAAGCACTCTCCTCAAGCATGCAAAACAGTTATTTACTTTTGCGGACAAGCATAGAGGAATTTACAGTGAGAATATACCTGAAGTTGCGACATATTATAACTCAACTGGATATGGGGATGAGCTTTTGTGGGCAGCTACCTGGCTCTACCATGCTACAGGTGATGATTCCTACCTTCAGTATGTGACTGGCCAAAATGGAGAAGATTATGCTCAATTTGGAAGCCCAACCTGGTTCAGTTGGGACAACAAGCTTGCCGGAACTCAGGTTTTGTTATCTAGAGTAAGCTTCTTCAAGGCAAAGGGCCTTTCAAGTTCATATGGTTCCGGCCTCCAAAATTATAGAAAATCCGCCGAGGCTGTAATGTGTGGTCTTCTTCCAGACTCTCCAACAGCCACAAAAAGCAGAACTGATAATGGTCTGATATGGGTGAGTGAATGGAACGCTTTGCAGCATCCTGTTGCATCTGCATTCTTAGCTTCTGTTTACAGTGACTATATGCTTACAACGCAGACTCCCAATATAAAATGTGATTCAGATTCCTTCAAACCATCAGATCTTCGAGACTTTGCCAGATCTCAGGCTGATTACGTGTTGGGCAAGAATCCTCAGCATATGAGTTTTCTGGTGGGATATGGAAAGAATTTCCCACAATTTGTGCATCACAGAGGAGCTTCAATTCCTGCTAATGCAAAAACTGGTTGCAAGGATGGGTGGCAGTGGCTTGACTCATCCGATCCGAATCCCAATGTAGCTACTGGAGCACTTGTTGGTGGACCTTTCTTAAATGAGACTTACATTGATTCTAGGAACAATTCTATGCAAGGAGAACCAAGCACATATAACAGTGCTGTCATAGTTGGTCTCTTATCAAGTTTAGTCACCACATCTTCGGCCCTTCAATCCTTCTCCTAA

Protein sequence

>Msa0479390

MREKSRSKGGCCGWFIAFVILALVVGAIVYAVKKKIDNSNSDKPEPVPGPPGAIDQKYASALKTAMQFFDVQKSGKLENNKISWRGDSALKDGKQADLDLTKGMYDAGDHMKFGFPMAFTASVLSWAILEYGDQMDAVGQLEPAQDSLRWITDFLVNAHPSENVLYIQVGDPVADHKCWNRPELITEERPLLQVNVSCPGSDVAAETAAAMASASLVFKKSDATYSSTLLKHAKQLFTFADKHRGIYSENIPEVATYYNSTGYGDELLWAATWLYHATGDDSYLQYVTGQNGEDYAQFGSPTWFSWDNKLAGTQVLLSRVSFFKAKGLSSSYGSGLQNYRKSAEAVMCGLLPDSPTATKSRTDNGLIWVSEWNALQHPVASAFLASVYSDYMLTTQTPNIKCDSDSFKPSDLRDFARSQADYVLGKNPQHMSFLVGYGKNFPQFVHHRGASIPANAKTGCKDGWQWLDSSDPNPNVATGALVGGPFLNETYIDSRNNSMQGEPSTYNSAVIVGLLSSLVTTSSALQSFS*