AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0479390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479390 MtrunA17_Chr3g0142501 99.622 529 2 0 1 529 1 529 0.0 1095
Msa0479390 MtrunA17_Chr8g0372031 62.330 515 191 1 14 528 23 534 0.0 638
Msa0479390 MtrunA17_Chr5g0439311 44.798 471 246 9 58 519 32 497 5.18e-138 409
Msa0479390 MtrunA17_Chr4g0038131 43.154 482 255 7 58 528 29 502 3.11e-136 408
Msa0479390 MtrunA17_Chr8g0388051 46.482 469 237 10 58 518 29 491 2.21e-135 406
Msa0479390 MtrunA17_Chr3g0119371 43.524 471 252 9 58 519 41 506 6.17e-130 389
Msa0479390 MtrunA17_Chr1g0164201 44.563 469 239 10 58 518 26 481 1.10e-126 379
Msa0479390 MtrunA17_Chr5g0397201 43.644 472 245 7 58 523 41 497 5.32e-125 375
Msa0479390 MtrunA17_Chr3g0145261 42.827 474 250 9 56 519 23 485 2.52e-122 368
Msa0479390 MtrunA17_Chr3g0119821 42.004 469 253 8 56 516 34 491 7.87e-122 367
Msa0479390 MtrunA17_Chr3g0086311 41.453 468 252 7 58 520 31 481 9.00e-119 358
Msa0479390 MtrunA17_Chr1g0195271 41.079 482 266 9 51 525 33 503 3.45e-115 350
Msa0479390 MtrunA17_Chr2g0291461 41.698 530 267 14 14 518 77 589 2.97e-114 351
Msa0479390 MtrunA17_Chr5g0444721 39.219 538 242 14 58 518 35 564 1.53e-113 348
Msa0479390 MtrunA17_Chr8g0391391 41.300 477 247 11 56 516 29 488 3.11e-113 345
Msa0479390 MtrunA17_Chr3g0080171 41.880 468 248 10 58 516 26 478 4.44e-112 341
Msa0479390 MtrunA17_Chr4g0018301 40.343 466 255 8 58 516 46 495 3.67e-110 337
Msa0479390 MtrunA17_Chr3g0120661 39.212 533 285 15 14 524 82 597 5.32e-106 330
Msa0479390 MtrunA17_Chr5g0397181 40.686 408 222 5 117 519 1 393 1.95e-104 318
Msa0479390 MtrunA17_Chr4g0018361 38.703 478 260 12 56 516 26 487 1.11e-101 315
Msa0479390 MtrunA17_Chr3g0126111 36.981 530 282 18 18 519 76 581 2.95e-95 301
Msa0479390 MtrunA17_Chr3g0136381 40.385 364 199 5 58 420 31 377 1.85e-91 286
Msa0479390 MtrunA17_Chr4g0018341 39.024 287 155 7 236 516 2 274 1.35e-58 196
Msa0479390 MtrunA17_Chr4g0018351 43.085 188 104 2 53 239 26 211 2.81e-44 155
Msa0479390 MtrunA17_Chr1g0164181 43.889 180 97 1 98 273 3 182 4.85e-41 150
Msa0479390 MtrunA17_Chr1g0164181 40.476 168 93 4 354 516 164 329 5.71e-35 134
Msa0479390 MtrunA17_Chr4g0072811 44.586 157 86 1 373 528 19 175 2.80e-38 139
Msa0479390 MtrunA17_Chr7g0269571 35.227 176 98 3 366 526 43 217 2.35e-31 121
Msa0479390 MtrunA17_Chr3g0136371 47.778 90 43 2 421 506 2 91 3.76e-21 88.6
Msa0479390 MtrunA17_Chr4g0022271 37.405 131 71 4 375 500 29 153 6.09e-20 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479390 AT1G19940.2 68.371 528 154 4 1 528 1 515 0.0 709
Msa0479390 AT1G19940.1 68.371 528 154 4 1 528 1 515 0.0 709
Msa0479390 AT1G75680.1 69.187 529 157 5 1 528 1 524 0.0 708
Msa0479390 AT1G19940.3 65.952 420 130 4 1 420 1 407 0.0 546
Msa0479390 AT4G11050.2 45.798 476 244 9 58 525 27 496 1.65e-139 414
Msa0479390 AT4G11050.3 46.008 476 243 10 58 525 27 496 9.95e-139 415
Msa0479390 AT4G11050.1 46.008 476 243 10 58 525 27 496 1.11e-138 415
Msa0479390 AT1G64390.1 44.676 479 251 9 58 528 26 498 1.54e-136 409
Msa0479390 AT2G32990.1 43.644 472 244 10 58 516 40 502 3.82e-131 392
Msa0479390 AT2G44540.1 44.397 473 247 7 52 518 28 490 1.71e-128 384
Msa0479390 AT2G44550.1 45.435 471 238 9 53 516 29 487 3.03e-128 383
Msa0479390 AT2G44560.1 45.032 473 244 8 52 518 28 490 4.74e-126 378
Msa0479390 AT1G48930.1 46.055 469 235 7 58 516 31 491 4.04e-125 380
Msa0479390 AT2G44570.1 42.887 471 252 9 55 518 31 491 3.85e-122 368
Msa0479390 AT4G23560.1 42.463 471 251 6 57 522 23 478 2.19e-119 360
Msa0479390 AT1G71380.1 42.706 473 248 9 52 516 19 476 1.15e-118 358
Msa0479390 AT4G02290.1 41.667 468 255 9 56 516 51 507 1.15e-118 360
Msa0479390 AT1G02800.1 41.983 474 255 10 55 521 41 501 6.30e-118 357
Msa0479390 AT3G43860.2 41.845 466 249 7 58 518 35 483 3.12e-117 355
Msa0479390 AT3G43860.1 41.845 466 249 7 58 518 35 483 3.12e-117 355
Msa0479390 AT1G22880.1 42.616 474 249 9 58 523 25 483 5.19e-117 354
Msa0479390 AT4G09740.1 42.340 470 251 7 58 522 24 478 6.86e-117 353
Msa0479390 AT4G39010.1 40.764 471 259 9 56 516 28 488 6.66e-115 349
Msa0479390 AT1G23210.1 40.000 470 254 9 58 515 29 482 5.90e-114 347
Msa0479390 AT1G70710.1 40.127 471 252 9 58 515 29 482 6.75e-114 347
Msa0479390 AT4G39000.1 39.496 476 268 9 51 516 19 484 6.04e-111 339
Msa0479390 AT5G49720.1 40.566 530 273 14 14 518 74 586 3.83e-108 336
Msa0479390 AT4G24260.1 43.149 489 244 14 58 522 109 587 9.64e-105 327
Msa0479390 AT4G38990.2 37.654 486 268 12 51 516 17 487 1.92e-100 312
Msa0479390 AT1G65610.1 36.484 529 298 13 14 521 82 593 3.20e-100 315
Msa0479390 AT1G22880.2 41.546 414 220 8 117 523 1 399 3.65e-99 305
Msa0479390 AT4G02290.2 40.148 406 226 8 117 516 1 395 1.44e-95 296
Msa0479390 AT2G44570.2 41.514 383 212 7 55 435 31 403 6.58e-89 279
Msa0479390 AT4G39010.2 39.516 372 209 8 56 421 28 389 9.00e-83 263
Msa0479390 AT1G22880.3 44.728 313 155 7 58 366 25 323 8.85e-71 230
Msa0479390 AT4G24260.3 42.119 387 193 13 58 420 109 488 8.10e-70 232
Msa0479390 AT4G24260.2 44.164 317 150 11 58 352 109 420 1.67e-63 214
Msa0479390 AT4G38990.1 36.311 347 183 7 51 392 17 330 1.47e-59 201

Find 181 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAACAGAGTTTGGGGTTT+TGG 0.147944 3_3:-84378889 None:intergenic
CATCACGTATTATTAGTTTA+TGG 0.157518 3_3:+84382124 Msa0479390:three_prime_UTR
GTTTATTGCGTTTGTGATTC+TGG 0.168400 3_3:+84378984 Msa0479390:CDS
GAGCATAATCTTCTCCATTT+TGG 0.188257 3_3:-84380280 None:intergenic
GGAGAAGATTATGCTCAATT+TGG 0.211354 3_3:+84380287 Msa0479390:CDS
TATTATAACTCAACTGGATA+TGG 0.212670 3_3:+84380182 Msa0479390:CDS
TAATAACACATTTCTTATTT+AGG 0.225442 3_3:+84378773 Msa0479390:five_prime_UTR
TTTATATAGATGGTCTGATA+TGG 0.236900 3_3:+84381140 Msa0479390:intron
ACAACGATAATGTCTATATT+TGG 0.241703 3_3:-84378740 None:intergenic
ATGAGACTTACATTGATTCT+AGG 0.242483 3_3:+84381910 Msa0479390:CDS
GTACTTCCTTGTAAAATATA+TGG 0.249625 3_3:+84382278 Msa0479390:three_prime_UTR
TCCCCATTTCTCGCCGCAAC+CGG 0.259382 3_3:+84378574 Msa0479390:five_prime_UTR
TTGAGGGGTATAATGGTAAA+AGG 0.271920 3_3:-84378402 None:intergenic
TAATGTCTATATTTGGAAAT+AGG 0.284072 3_3:-84378733 None:intergenic
CAAATGCAGAAAACAGAGTT+TGG 0.299311 3_3:-84378897 None:intergenic
GGAGAATGTTCTGTATATTC+AGG 0.309453 3_3:+84379773 Msa0479390:CDS
TCGTGGGCAATTCTAGAATA+TGG 0.312428 3_3:+84379663 Msa0479390:CDS
AGCAATGGCATCAGCATCTT+TGG 0.319777 3_3:+84380040 Msa0479390:CDS
AGTTAGCAATGTATTTGTTT+GGG 0.320297 3_3:+84378814 Msa0479390:five_prime_UTR
GGAGGACCGGGAACCGGTTC+GGG 0.321906 3_3:-84379072 None:intergenic
TTTGTGGCTGTTGGAGAGTC+TGG 0.335910 3_3:-84380785 None:intergenic
GAGAGGGGATTCGGCTCTTA+AGG 0.338315 3_3:+84379542 Msa0479390:CDS
CAGTATGTGACTGGCCAAAA+TGG 0.350134 3_3:+84380266 Msa0479390:CDS
GCCGGGGATCACATGAAGTT+TGG 0.352977 3_3:+84379609 Msa0479390:CDS
CTTTCAAGTTCATATGGTTC+CGG 0.354604 3_3:+84380713 Msa0479390:CDS
GACCCGGTTGCGGCGAGAAA+TGG 0.355828 3_3:-84378577 None:intergenic
GAGTTAGCAATGTATTTGTT+TGG 0.360242 3_3:+84378813 Msa0479390:five_prime_UTR
GATAAACCCGAACCGGTTCC+CGG 0.365719 3_3:+84379066 Msa0479390:CDS
GTGTTGGAGGAAAATGGATA+TGG 0.365793 3_3:-84378609 None:intergenic
TTATAATATGTCGCAACTTC+AGG 0.368599 3_3:-84380167 None:intergenic
GGAGCTACATACTATAGTTT+AGG 0.374553 3_3:-84382033 None:intergenic
TGTCCCAACTGAACCAGGTT+GGG 0.383206 3_3:-84380313 None:intergenic
AGGAGGACCGGGAACCGGTT+CGG 0.385546 3_3:-84379073 None:intergenic
GTCGTTGTGTTGGAGGAAAA+TGG 0.386601 3_3:-84378615 None:intergenic
TTCTCATATCCAACTTCATA+AGG 0.387488 3_3:+84378452 Msa0479390:five_prime_UTR
GCTAGGTTGTTGGTTGGTGC+TGG 0.390689 3_3:+84378649 Msa0479390:five_prime_UTR
ACCCGGTTGCGGCGAGAAAT+GGG 0.395938 3_3:-84378576 None:intergenic
AAATGCAGAAAACAGAGTTT+GGG 0.396742 3_3:-84378896 None:intergenic
AGTCATTAATTAATGTATAC+AGG 0.400302 3_3:+84382205 Msa0479390:three_prime_UTR
ATTATAACTCAACTGGATAT+GGG 0.400764 3_3:+84380183 Msa0479390:CDS
AATTGTTTGAAATCGTTAAA+CGG 0.407563 3_3:-84378677 None:intergenic
ACTAATAATACGTGATGATA+AGG 0.416229 3_3:-84382118 None:intergenic
AAGGGCCTTTCAAGTTCATA+TGG 0.416309 3_3:+84380707 Msa0479390:CDS
TTTCTCGCCGCAACCGGGTC+GGG 0.419432 3_3:+84378580 Msa0479390:five_prime_UTR
TCTCGTCAATGCTCATCCTT+CGG 0.427984 3_3:+84379752 Msa0479390:CDS
AATAAGTTGGAGAGGGGATT+CGG 0.430660 3_3:+84379533 Msa0479390:CDS
AATGGATGCTGTTGGCCAAT+TGG 0.431030 3_3:+84379692 Msa0479390:CDS
TTCCAGGCTGATTACGTGTT+GGG 0.431458 3_3:+84381699 Msa0479390:intron
TTCAGCTGCAACATCTGATC+CGG 0.435202 3_3:-84380009 None:intergenic
ATCAATGGCACCAGGAGGAC+CGG 0.439759 3_3:-84379085 None:intergenic
GCGACATATTATAACTCAAC+TGG 0.441782 3_3:+84380176 Msa0479390:CDS
TGAGTGTGAACCGTGGTGTC+TGG 0.442330 3_3:+84382175 Msa0479390:three_prime_UTR
CCGAATCCCAATGTAGCTAC+TGG 0.444550 3_3:+84381861 Msa0479390:CDS
GTTGCAAGGATGGGTGGCAG+TGG 0.446186 3_3:+84381823 Msa0479390:CDS
TCTAGAATATGGAGATCAAA+TGG 0.446875 3_3:+84379674 Msa0479390:CDS
ATCTAGAGTAAGCTTCTTCA+AGG 0.446995 3_3:+84380682 Msa0479390:CDS
AGCTGAAACTGCAGCAGCAA+TGG 0.448020 3_3:+84380025 Msa0479390:CDS
CCCCATTTCTCGCCGCAACC+GGG 0.448967 3_3:+84378575 Msa0479390:five_prime_UTR
AAGTTTAGTCACCACATCTT+CGG 0.449573 3_3:+84381995 Msa0479390:CDS
GCACCAGGAGGACCGGGAAC+CGG 0.455702 3_3:-84379078 None:intergenic
TCGAGACTTTGCCAGATCTC+AGG 0.456961 3_3:+84381294 Msa0479390:CDS
TTATATAGATGGTCTGATAT+GGG 0.457104 3_3:+84381141 Msa0479390:intron
AGTTGGGACAACAAGCTTGC+CGG 0.460646 3_3:+84380326 Msa0479390:CDS
CAACACTTGTGATCTGCAAC+AGG 0.466398 3_3:-84379927 None:intergenic
CTCTGTGATGCACAAATTGT+GGG 0.469293 3_3:-84381770 None:intergenic
AATCTTGTGCTGGTTCCAAT+TGG 0.470000 3_3:-84379707 None:intergenic
TAGAGAACAACAAAATAAGT+TGG 0.470544 3_3:+84379520 Msa0479390:CDS
CCAGTAGCTACATTGGGATT+CGG 0.470664 3_3:-84381861 None:intergenic
CTCAATTTGGAAGCCCAACC+TGG 0.472205 3_3:+84380300 Msa0479390:CDS
GTCTGATATGGGTGAGTGAA+TGG 0.473028 3_3:+84381152 Msa0479390:CDS
GCTAAGAATGCAGATGCAAC+AGG 0.473355 3_3:-84381190 None:intergenic
ATGAATGCATACCTGAGATC+TGG 0.474526 3_3:-84381305 None:intergenic
ACAGATCAATAACGTGATTA+CGG 0.475142 3_3:-84382337 None:intergenic
CTTGTTGTCCCAACTGAACC+AGG 0.475271 3_3:-84380318 None:intergenic
GGAAATGTCCCTTATGAAGT+TGG 0.475379 3_3:-84378461 None:intergenic
ATTTCTCGCCGCAACCGGGT+CGG 0.478416 3_3:+84378579 Msa0479390:five_prime_UTR
CCCTACTTACTTCTAAATCT+AGG 0.478551 3_3:+84378504 Msa0479390:five_prime_UTR
AGGATACGTTCACTTGTAAG+AGG 0.479664 3_3:-84379983 None:intergenic
ATACTCTGTCGTTGTGTTGG+AGG 0.482880 3_3:-84378622 None:intergenic
CAAAAGGAGGATGTTGTGGT+TGG 0.485199 3_3:+84378962 Msa0479390:CDS
TCAATGCAGTTTCAGATCGA+TGG 0.485525 3_3:-84378702 None:intergenic
GAACCGGTTCCCGGTCCTCC+TGG 0.489943 3_3:+84379075 Msa0479390:CDS
ATGGGGAGAAGGAGTCGAAA+TGG 0.490979 3_3:-84378558 None:intergenic
GGTCTGACCCGACCCGGTTG+CGG 0.492298 3_3:-84378587 None:intergenic
GTAGCTACTGGAGCACTTGT+TGG 0.494083 3_3:+84381873 Msa0479390:CDS
GTAAGCTTCTTCAAGGCAAA+GGG 0.494576 3_3:+84380689 Msa0479390:CDS
AGTATACTCTGTCGTTGTGT+TGG 0.494988 3_3:-84378625 None:intergenic
AACAACAAAATAAGTTGGAG+AGG 0.494998 3_3:+84379525 Msa0479390:CDS
AAATTCAGATAAACCCGAAC+CGG 0.495107 3_3:+84379059 Msa0479390:CDS
CAAAAGGAATGTATGATGCC+GGG 0.495516 3_3:+84379592 Msa0479390:CDS
GCAGATTTAGATCTAACAAA+AGG 0.496053 3_3:+84379576 Msa0479390:CDS
TCGAAGATCTGATGGTTTGA+AGG 0.496987 3_3:-84381275 None:intergenic
CCTCTGTGATGCACAAATTG+TGG 0.501280 3_3:-84381771 None:intergenic
GAAGCCCAACCTGGTTCAGT+TGG 0.502198 3_3:+84380309 Msa0479390:CDS
GTGATTCTGGCTCTTGTGGT+CGG 0.505371 3_3:+84378997 Msa0479390:CDS
AAGCCCAACCTGGTTCAGTT+GGG 0.506162 3_3:+84380310 Msa0479390:CDS
ACAAAAGGAATGTATGATGC+CGG 0.506505 3_3:+84379591 Msa0479390:CDS
TATAACAGTGCTGTCATAGT+TGG 0.509805 3_3:+84381963 Msa0479390:CDS
ATACTAGCTAGGTTGTTGGT+TGG 0.510801 3_3:+84378643 Msa0479390:five_prime_UTR
TGCAACATCTGATCCGGGAC+AGG 0.511750 3_3:-84380003 None:intergenic
GAGTATACTAGCTAGGTTGT+TGG 0.514068 3_3:+84378639 Msa0479390:five_prime_UTR
GCTACTGGAGCACTTGTTGG+TGG 0.515300 3_3:+84381876 Msa0479390:CDS
ACCTGTAGCATGGTAGAGCC+AGG 0.516769 3_3:-84380228 None:intergenic
CCTAGATTTAGAAGTAAGTA+GGG 0.518094 3_3:-84378504 None:intergenic
GTTAGCAATGTATTTGTTTG+GGG 0.523868 3_3:+84378815 Msa0479390:five_prime_UTR
TTGTCCCAACTGAACCAGGT+TGG 0.523981 3_3:-84380314 None:intergenic
AACCAGCACAAGATTCTCTC+AGG 0.525412 3_3:+84379715 Msa0479390:CDS
TACTGCCTCAGTGCTATCGT+GGG 0.526117 3_3:+84379647 Msa0479390:CDS
TAGTTTAGGAGAAGGATTGA+AGG 0.527196 3_3:-84382019 None:intergenic
GCCTAGATTTAGAAGTAAGT+AGG 0.527882 3_3:-84378505 None:intergenic
AGCTCTTCATACCTGAGTTC+CGG 0.531252 3_3:-84380345 None:intergenic
CACCTGAGAGAATCTTGTGC+TGG 0.533013 3_3:-84379717 None:intergenic
TCTCATATCCAACTTCATAA+GGG 0.534299 3_3:+84378453 Msa0479390:five_prime_UTR
AGTGCTCCAGTAGCTACATT+GGG 0.536888 3_3:-84381867 None:intergenic
CTCATGCTAGCTTCGTCGGT+GGG 0.537380 3_3:-84378361 None:intergenic
CAACAAGCTTGCCGGAACTC+AGG 0.539769 3_3:+84380334 Msa0479390:CDS
TCCTACCTTCAGTATGTGAC+TGG 0.540197 3_3:+84380257 Msa0479390:CDS
CTTCCAGGCTGATTACGTGT+TGG 0.540229 3_3:+84381698 Msa0479390:intron
CGGAACCATATGAACTTGAA+AGG 0.540605 3_3:-84380712 None:intergenic
AAGTGCTCCAGTAGCTACAT+TGG 0.543749 3_3:-84381868 None:intergenic
GCAAAGTCTCGAAGATCTGA+TGG 0.544007 3_3:-84381283 None:intergenic
ATGTAAGTCTCATTTAAGAA+AGG 0.549620 3_3:-84381900 None:intergenic
GTTTGTGATTCTGGCTCTTG+TGG 0.550904 3_3:+84378993 Msa0479390:CDS
TTGACTCATGCTAGCTTCGT+CGG 0.552816 3_3:-84378365 None:intergenic
AGTAAGCTTCTTCAAGGCAA+AGG 0.552883 3_3:+84380688 Msa0479390:CDS
ACCTGGCTCTACCATGCTAC+AGG 0.553331 3_3:+84380227 Msa0479390:CDS
ACCAAACTTCATGTGATCCC+CGG 0.556653 3_3:-84379610 None:intergenic
CAATAGAATAAGCTCAGAGC+TGG 0.556969 3_3:-84382256 None:intergenic
CAAGTGAACGTATCCTGTCC+CGG 0.560701 3_3:+84379990 Msa0479390:CDS
GGATTGAAGGGCCGAAGATG+TGG 0.569561 3_3:-84382006 None:intergenic
GTGAACCGTGGTGTCTGGAT+AGG 0.571683 3_3:+84382180 Msa0479390:three_prime_UTR
CTGTTGCAGATCACAAGTGT+TGG 0.571688 3_3:+84379928 Msa0479390:CDS
TCAATGGCACCAGGAGGACC+GGG 0.573055 3_3:-84379084 None:intergenic
ACAGCACTGTTATATGTGCT+TGG 0.573334 3_3:-84381954 None:intergenic
GGGGATTCGGCTCTTAAGGA+TGG 0.573397 3_3:+84379546 Msa0479390:CDS
TGCGGCGAGAAATGGGGAGA+AGG 0.575232 3_3:-84378569 None:intergenic
TTACTGCCTCAGTGCTATCG+TGG 0.577110 3_3:+84379646 Msa0479390:CDS
AGTTTAGGAGAAGGATTGAA+GGG 0.578741 3_3:-84382018 None:intergenic
ACATACTATAGTTTAGGAGA+AGG 0.578891 3_3:-84382027 None:intergenic
TTATAACTCAACTGGATATG+GGG 0.582247 3_3:+84380184 Msa0479390:CDS
AAGACCACACATTACAGCCT+CGG 0.582653 3_3:-84380759 None:intergenic
ACAACAAAATAAGTTGGAGA+GGG 0.586545 3_3:+84379526 Msa0479390:CDS
AGCTACATTGGGATTCGGAT+CGG 0.590300 3_3:-84381856 None:intergenic
TCTAGGAACAATTCTATGCA+AGG 0.591369 3_3:+84381927 Msa0479390:CDS
TCAGCTGCAACATCTGATCC+GGG 0.591508 3_3:-84380008 None:intergenic
GATATGGGTCTGACCCGACC+CGG 0.592804 3_3:-84378593 None:intergenic
TGTTGGAGGAAAATGGATAT+GGG 0.596187 3_3:-84378608 None:intergenic
CGTTCCTCAGTAATTAACTC+AGG 0.597205 3_3:-84379957 None:intergenic
AGATCAAAAGGAGGATGTTG+TGG 0.599433 3_3:+84378958 Msa0479390:CDS
CCCGGTTGCGGCGAGAAATG+GGG 0.601279 3_3:-84378575 None:intergenic
GTAATCACGTTATTGATCTG+TGG 0.604164 3_3:+84382339 Msa0479390:three_prime_UTR
ACTCATGCTAGCTTCGTCGG+TGG 0.611279 3_3:-84378362 None:intergenic
ACTGAGGCAGTAAAAGCCAT+AGG 0.613713 3_3:-84379636 None:intergenic
CAGCACAAGATTCTCTCAGG+TGG 0.615600 3_3:+84379718 Msa0479390:CDS
TTTGGCCAGTCACATACTGA+AGG 0.616951 3_3:-84380262 None:intergenic
AGGAATCATCACCTGTAGCA+TGG 0.618916 3_3:-84380238 None:intergenic
AATGCAGAAAACAGAGTTTG+GGG 0.620773 3_3:-84378895 None:intergenic
AAACTGGTTGCAAGGATGGG+TGG 0.621140 3_3:+84381817 Msa0479390:CDS
GATTACTGCATGTAGAATCA+CGG 0.626929 3_3:-84378482 None:intergenic
AAAAGGAATGTATGATGCCG+GGG 0.628087 3_3:+84379593 Msa0479390:CDS
ATGGTAATGATCGATATCGC+GGG 0.628262 3_3:-84378539 None:intergenic
AACGACAGAGTATACTAGCT+AGG 0.630471 3_3:+84378632 Msa0479390:five_prime_UTR
GGATACGTTCACTTGTAAGA+GGG 0.631666 3_3:-84379982 None:intergenic
GAATAAGCTCAGAGCTGGTG+AGG 0.639588 3_3:-84382251 None:intergenic
GGAGATCAAATGGATGCTGT+TGG 0.641613 3_3:+84379684 Msa0479390:CDS
TCCGCCGAGGCTGTAATGTG+TGG 0.641659 3_3:+84380755 Msa0479390:CDS
ACCAGAAAACTCATATGCTG+AGG 0.647665 3_3:-84381729 None:intergenic
CAACAAAATAAGTTGGAGAG+GGG 0.657191 3_3:+84379527 Msa0479390:CDS
ATATACAGAACATTCTCCGA+AGG 0.657437 3_3:-84379768 None:intergenic
GCCAGTCACATACTGAAGGT+AGG 0.663540 3_3:-84380258 None:intergenic
CCACAATTTGTGCATCACAG+AGG 0.673056 3_3:+84381771 Msa0479390:CDS
ACCACACATTACAGCCTCGG+CGG 0.674391 3_3:-84380756 None:intergenic
GATACGTTCACTTGTAAGAG+GGG 0.676663 3_3:-84379981 None:intergenic
AATGGTAATGATCGATATCG+CGG 0.677546 3_3:-84378540 None:intergenic
TAGACCTGAGTTAATTACTG+AGG 0.715470 3_3:+84379953 Msa0479390:CDS
ACTCAAAAGAAGTTGCGACG+CGG 0.717202 3_3:+84382068 Msa0479390:three_prime_UTR
AAATTATAGAAAATCCGCCG+AGG 0.730261 3_3:+84380742 Msa0479390:CDS
ACTAACCTATCCAGACACCA+CGG 0.763242 3_3:-84382185 None:intergenic
AATTGCCCACGATAGCACTG+AGG 0.772045 3_3:-84379652 None:intergenic
TGAAGTTGGATATGAGAACG+TGG 0.785477 3_3:-84378447 None:intergenic
AATATATTGAGTGTGAACCG+TGG 0.788543 3_3:+84382168 Msa0479390:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATAAAAAAAAACACTT+CGG - chr3_3:84380452-84380471 None:intergenic 10.0%
!! TAGAAATATATTACTAAAAA+TGG - chr3_3:84381084-84381103 None:intergenic 10.0%
!! TATAAAACATTTAATGTTAT+TGG - chr3_3:84381479-84381498 None:intergenic 10.0%
!!! TAATAACACATTTCTTATTT+AGG + chr3_3:84378773-84378792 Msa0479390:five_prime_UTR 15.0%
!!! TTCTTTTTCTTTTATATAGA+TGG + chr3_3:84381130-84381149 Msa0479390:intron 15.0%
!! GTAAATTCTTCTTATATTAA+GGG - chr3_3:84381359-84381378 None:intergenic 15.0%
!! TTAATTAGTATAAAATTGAG+TGG + chr3_3:84381436-84381455 Msa0479390:intron 15.0%
!!! TTTAATGTTATTGGTTTAAT+TGG - chr3_3:84381470-84381489 None:intergenic 15.0%
!! TTTAGTATAAATTTACATGT+AGG - chr3_3:84381502-84381521 None:intergenic 15.0%
!! ATTTATCTGACATTAAATAA+AGG + chr3_3:84381523-84381542 Msa0479390:intron 15.0%
!! TTTATCTGACATTAAATAAA+GGG + chr3_3:84381524-84381543 Msa0479390:intron 15.0%
!!! AATTGTTTGAAATCGTTAAA+CGG - chr3_3:84378680-84378699 None:intergenic 20.0%
!! TAATGTCTATATTTGGAAAT+AGG - chr3_3:84378736-84378755 None:intergenic 20.0%
!!! ATAATCCTTTTTTTCATTCT+CGG + chr3_3:84379166-84379185 Msa0479390:intron 20.0%
!!! AAAACAGTTATTTACTTTTG+CGG + chr3_3:84380112-84380131 Msa0479390:CDS 20.0%
!!! AATAAGTAGAAGTATCATTT+AGG - chr3_3:84380538-84380557 None:intergenic 20.0%
!! CTAATCAGATTATAAGTTAA+GGG - chr3_3:84381009-84381028 None:intergenic 20.0%
!!! AATAGTTTTATTAGATAGTC+TGG + chr3_3:84381036-84381055 Msa0479390:intron 20.0%
!!! TCTGAATCACATTTTATATT+GGG - chr3_3:84381253-84381272 None:intergenic 20.0%
!!! ATCTGAATCACATTTTATAT+TGG - chr3_3:84381254-84381273 None:intergenic 20.0%
!! GGTAAATTCTTCTTATATTA+AGG - chr3_3:84381360-84381379 None:intergenic 20.0%
!!! AGGAGTTGTATTTTTTTTTT+TGG + chr3_3:84381394-84381413 Msa0479390:intron 20.0%
!! AGTCATTAATTAATGTATAC+AGG + chr3_3:84382205-84382224 Msa0479390:three_prime_UTR 20.0%
!!! AATCAACCATATATTTTACA+AGG - chr3_3:84382287-84382306 None:intergenic 20.0%
!!! ATTCTTTTTGTTATTGTTGT+TGG + chr3_3:84382304-84382323 Msa0479390:three_prime_UTR 20.0%
! ACAACGATAATGTCTATATT+TGG - chr3_3:84378743-84378762 None:intergenic 25.0%
! AGTTAGCAATGTATTTGTTT+GGG + chr3_3:84378814-84378833 Msa0479390:five_prime_UTR 25.0%
!!! AGAAGCATATTTTTGATCAA+TGG - chr3_3:84379103-84379122 None:intergenic 25.0%
! TTGTGAAATGCAAGAAATAA+AGG - chr3_3:84379195-84379214 None:intergenic 25.0%
!!! TAATGTTTTAAAAACCGAAC+TGG + chr3_3:84379286-84379305 Msa0479390:intron 25.0%
!!! TGGTTTTGAAAACATTGTTT+TGG + chr3_3:84379425-84379444 Msa0479390:intron 25.0%
! TAGAGAACAACAAAATAAGT+TGG + chr3_3:84379520-84379539 Msa0479390:CDS 25.0%
! TTCATTTATCAAAATCGATG+TGG + chr3_3:84379892-84379911 Msa0479390:intron 25.0%
! TATTATAACTCAACTGGATA+TGG + chr3_3:84380182-84380201 Msa0479390:CDS 25.0%
! ATTATAACTCAACTGGATAT+GGG + chr3_3:84380183-84380202 Msa0479390:CDS 25.0%
! TAGAATTTGGAAACAAGATT+CGG - chr3_3:84380372-84380391 None:intergenic 25.0%
! TTGTTTCCAAATTCTAAACT+AGG + chr3_3:84380376-84380395 Msa0479390:intron 25.0%
!! AATGATCCTAGTTTAGAATT+TGG - chr3_3:84380385-84380404 None:intergenic 25.0%
! AATGCTTTCATGTATATACT+AGG + chr3_3:84380574-84380593 Msa0479390:intron 25.0%
! ATGCTTTCATGTATATACTA+GGG + chr3_3:84380575-84380594 Msa0479390:intron 25.0%
!! TCTGACTTGATATTAACTAA+TGG + chr3_3:84380844-84380863 Msa0479390:intron 25.0%
!! CTGACTTGATATTAACTAAT+GGG + chr3_3:84380845-84380864 Msa0479390:intron 25.0%
! AATTTGTGTATTCAATGCAT+TGG + chr3_3:84380905-84380924 Msa0479390:intron 25.0%
! GCTAATCAGATTATAAGTTA+AGG - chr3_3:84381010-84381029 None:intergenic 25.0%
! TTTATATAGATGGTCTGATA+TGG + chr3_3:84381140-84381159 Msa0479390:intron 25.0%
! TTATATAGATGGTCTGATAT+GGG + chr3_3:84381141-84381160 Msa0479390:intron 25.0%
!!! TTTTTTTTTGGTACAGATCA+AGG + chr3_3:84381406-84381425 Msa0479390:intron 25.0%
!!! AAGAAATTGTGCGTATTTTT+TGG - chr3_3:84381612-84381631 None:intergenic 25.0%
! TACGCACAATTTCTTATAAT+AGG + chr3_3:84381617-84381636 Msa0479390:intron 25.0%
! ACGCACAATTTCTTATAATA+GGG + chr3_3:84381618-84381637 Msa0479390:intron 25.0%
! ATGTAAGTCTCATTTAAGAA+AGG - chr3_3:84381903-84381922 None:intergenic 25.0%
! ACTAATAATACGTGATGATA+AGG - chr3_3:84382121-84382140 None:intergenic 25.0%
!! CATCACGTATTATTAGTTTA+TGG + chr3_3:84382124-84382143 Msa0479390:three_prime_UTR 25.0%
! GTACTTCCTTGTAAAATATA+TGG + chr3_3:84382278-84382297 Msa0479390:three_prime_UTR 25.0%
TTCTCATATCCAACTTCATA+AGG + chr3_3:84378452-84378471 Msa0479390:five_prime_UTR 30.0%
TCTCATATCCAACTTCATAA+GGG + chr3_3:84378453-84378472 Msa0479390:five_prime_UTR 30.0%
CCTAGATTTAGAAGTAAGTA+GGG - chr3_3:84378507-84378526 None:intergenic 30.0%
GAGTTAGCAATGTATTTGTT+TGG + chr3_3:84378813-84378832 Msa0479390:five_prime_UTR 30.0%
GTTAGCAATGTATTTGTTTG+GGG + chr3_3:84378815-84378834 Msa0479390:five_prime_UTR 30.0%
AAATGCAGAAAACAGAGTTT+GGG - chr3_3:84378899-84378918 None:intergenic 30.0%
AGAGAAAAATCGAGATCAAA+AGG + chr3_3:84378946-84378965 Msa0479390:CDS 30.0%
ATTTCTTGCATTTCACAATG+TGG + chr3_3:84379197-84379216 Msa0479390:intron 30.0%
!! CAATGTGGTTGGTTTATTAT+AGG + chr3_3:84379212-84379231 Msa0479390:intron 30.0%
!! AATACTTTGGTGGGTTATTT+AGG - chr3_3:84379381-84379400 None:intergenic 30.0%
! AACAACAAAATAAGTTGGAG+AGG + chr3_3:84379525-84379544 Msa0479390:CDS 30.0%
! ACAACAAAATAAGTTGGAGA+GGG + chr3_3:84379526-84379545 Msa0479390:CDS 30.0%
GCAGATTTAGATCTAACAAA+AGG + chr3_3:84379576-84379595 Msa0479390:CDS 30.0%
! TCTAGAATATGGAGATCAAA+TGG + chr3_3:84379674-84379693 Msa0479390:CDS 30.0%
! TTCTGTATATTCAGGTTAGT+TGG + chr3_3:84379781-84379800 Msa0479390:intron 30.0%
TTATAATATGTCGCAACTTC+AGG - chr3_3:84380170-84380189 None:intergenic 30.0%
TTATAACTCAACTGGATATG+GGG + chr3_3:84380184-84380203 Msa0479390:CDS 30.0%
! TAGGATCATTTTATAGCTGA+AGG + chr3_3:84380395-84380414 Msa0479390:intron 30.0%
GTCTATTCTATGTAATGTGT+AGG - chr3_3:84380487-84380506 None:intergenic 30.0%
TAGGATAAGATAATGCCATA+AGG - chr3_3:84380519-84380538 None:intergenic 30.0%
TGCTTTCATGTATATACTAG+GGG + chr3_3:84380576-84380595 Msa0479390:intron 30.0%
ATAATCCTTCTTCTTAATGC+AGG + chr3_3:84380652-84380671 Msa0479390:intron 30.0%
!! TTTTCTATAATTTTGGAGGC+CGG - chr3_3:84380735-84380754 None:intergenic 30.0%
! CGGATTTTCTATAATTTTGG+AGG - chr3_3:84380739-84380758 None:intergenic 30.0%
!!! AATTTTCATAAAAAGTGCCC+CGG - chr3_3:84380889-84380908 None:intergenic 30.0%
!!! AGTTTTATTAGATAGTCTGG+AGG + chr3_3:84381039-84381058 Msa0479390:intron 30.0%
! TTTTTGTAGAATACTCTCTC+TGG + chr3_3:84381333-84381352 Msa0479390:intron 30.0%
TTTACCAAAATCACAGATCA+AGG + chr3_3:84381374-84381393 Msa0479390:intron 30.0%
AAAACTTGTCTAATACTTCC+AGG + chr3_3:84381683-84381702 Msa0479390:intron 30.0%
!! ATGAGACTTACATTGATTCT+AGG + chr3_3:84381910-84381929 Msa0479390:CDS 30.0%
ACATACTATAGTTTAGGAGA+AGG - chr3_3:84382030-84382049 None:intergenic 30.0%
!! CTTTTGAGTGGAATTGAATA+TGG - chr3_3:84382057-84382076 None:intergenic 30.0%
ACAGATCAATAACGTGATTA+CGG - chr3_3:84382340-84382359 None:intergenic 30.0%
! TTGAGGGGTATAATGGTAAA+AGG - chr3_3:84378405-84378424 None:intergenic 35.0%
GATTACTGCATGTAGAATCA+CGG - chr3_3:84378485-84378504 None:intergenic 35.0%
CCCTACTTACTTCTAAATCT+AGG + chr3_3:84378504-84378523 Msa0479390:five_prime_UTR 35.0%
GCCTAGATTTAGAAGTAAGT+AGG - chr3_3:84378508-84378527 None:intergenic 35.0%
! AATGGTAATGATCGATATCG+CGG - chr3_3:84378543-84378562 None:intergenic 35.0%
TGTTGGAGGAAAATGGATAT+GGG - chr3_3:84378611-84378630 None:intergenic 35.0%
AATGCAGAAAACAGAGTTTG+GGG - chr3_3:84378898-84378917 None:intergenic 35.0%
CAAATGCAGAAAACAGAGTT+TGG - chr3_3:84378900-84378919 None:intergenic 35.0%
GAAAAATCGAGATCAAAAGG+AGG + chr3_3:84378949-84378968 Msa0479390:CDS 35.0%
GTTTATTGCGTTTGTGATTC+TGG + chr3_3:84378984-84379003 Msa0479390:CDS 35.0%
AAATTCAGATAAACCCGAAC+CGG + chr3_3:84379059-84379078 Msa0479390:CDS 35.0%
!! TATTTTTGATCAATGGCACC+AGG - chr3_3:84379096-84379115 None:intergenic 35.0%
GGTAACCGAGAATGAAAAAA+AGG - chr3_3:84379174-84379193 None:intergenic 35.0%
AACCGAACTGGATATTGAAT+CGG + chr3_3:84379298-84379317 Msa0479390:intron 35.0%
TACGGTTCAAATACTTTGGT+GGG - chr3_3:84379390-84379409 None:intergenic 35.0%
ATGCTACGGTTCAAATACTT+TGG - chr3_3:84379394-84379413 None:intergenic 35.0%
CCAAATCAAATCACATGCTA+CGG - chr3_3:84379408-84379427 None:intergenic 35.0%
! CAACAAAATAAGTTGGAGAG+GGG + chr3_3:84379527-84379546 Msa0479390:CDS 35.0%
ACAAAAGGAATGTATGATGC+CGG + chr3_3:84379591-84379610 Msa0479390:CDS 35.0%
!!! CATGAAGTTTGGTTTTCCTA+TGG + chr3_3:84379620-84379639 Msa0479390:CDS 35.0%
ATATACAGAACATTCTCCGA+AGG - chr3_3:84379771-84379790 None:intergenic 35.0%
GGAGAATGTTCTGTATATTC+AGG + chr3_3:84379773-84379792 Msa0479390:CDS 35.0%
TTTATCAAAATCGATGTGGC+AGG + chr3_3:84379896-84379915 Msa0479390:intron 35.0%
TAGACCTGAGTTAATTACTG+AGG + chr3_3:84379953-84379972 Msa0479390:CDS 35.0%
! ATAACTGTTTTGCATGCTTG+AGG - chr3_3:84380103-84380122 None:intergenic 35.0%
GCGACATATTATAACTCAAC+TGG + chr3_3:84380176-84380195 Msa0479390:CDS 35.0%
! GAGCATAATCTTCTCCATTT+TGG - chr3_3:84380283-84380302 None:intergenic 35.0%
GGAGAAGATTATGCTCAATT+TGG + chr3_3:84380287-84380306 Msa0479390:CDS 35.0%
ATAGACTCAATCAAGCCTTA+TGG + chr3_3:84380501-84380520 Msa0479390:intron 35.0%
CAAAACCTGCATTAAGAAGA+AGG - chr3_3:84380660-84380679 None:intergenic 35.0%
! ATCTAGAGTAAGCTTCTTCA+AGG + chr3_3:84380682-84380701 Msa0479390:CDS 35.0%
!! CTTTCAAGTTCATATGGTTC+CGG + chr3_3:84380713-84380732 Msa0479390:CDS 35.0%
!! CGGCGGATTTTCTATAATTT+TGG - chr3_3:84380742-84380761 None:intergenic 35.0%
AAATTATAGAAAATCCGCCG+AGG + chr3_3:84380742-84380761 Msa0479390:CDS 35.0%
!!! ACTATCAGTTCTGCTTTTTG+TGG - chr3_3:84380804-84380823 None:intergenic 35.0%
ATCAAGTCAGATAGCATTCA+AGG - chr3_3:84380835-84380854 None:intergenic 35.0%
!!! ATTTTCATAAAAAGTGCCCC+GGG - chr3_3:84380888-84380907 None:intergenic 35.0%
! AACTCCTTGATCTGTGATTT+TGG - chr3_3:84381381-84381400 None:intergenic 35.0%
ATAGGGATCAGAGATAGTAT+CGG + chr3_3:84381635-84381654 Msa0479390:intron 35.0%
ATTCCTGCTAATGCAAAAAC+TGG + chr3_3:84381801-84381820 Msa0479390:CDS 35.0%
TAATGCAAAAACTGGTTGCA+AGG + chr3_3:84381809-84381828 Msa0479390:CDS 35.0%
TCTAGGAACAATTCTATGCA+AGG + chr3_3:84381927-84381946 Msa0479390:CDS 35.0%
TATAACAGTGCTGTCATAGT+TGG + chr3_3:84381963-84381982 Msa0479390:CDS 35.0%
AAGTTTAGTCACCACATCTT+CGG + chr3_3:84381995-84382014 Msa0479390:CDS 35.0%
AGTTTAGGAGAAGGATTGAA+GGG - chr3_3:84382021-84382040 None:intergenic 35.0%
TAGTTTAGGAGAAGGATTGA+AGG - chr3_3:84382022-84382041 None:intergenic 35.0%
GGAGCTACATACTATAGTTT+AGG - chr3_3:84382036-84382055 None:intergenic 35.0%
AATATATTGAGTGTGAACCG+TGG + chr3_3:84382168-84382187 Msa0479390:three_prime_UTR 35.0%
GTAATCACGTTATTGATCTG+TGG + chr3_3:84382339-84382358 Msa0479390:three_prime_UTR 35.0%
!! GTGGATTTTGAGGGGTATAA+TGG - chr3_3:84378412-84378431 None:intergenic 40.0%
!! TTTTGTCGGTGGATTTTGAG+GGG - chr3_3:84378420-84378439 None:intergenic 40.0%
!! GTTTTGTCGGTGGATTTTGA+GGG - chr3_3:84378421-84378440 None:intergenic 40.0%
!! TGTTTTGTCGGTGGATTTTG+AGG - chr3_3:84378422-84378441 None:intergenic 40.0%
!!! AACGTGGTGTTGTGTTTTGT+CGG - chr3_3:84378434-84378453 None:intergenic 40.0%
TGAAGTTGGATATGAGAACG+TGG - chr3_3:84378450-84378469 None:intergenic 40.0%
GGAAATGTCCCTTATGAAGT+TGG - chr3_3:84378464-84378483 None:intergenic 40.0%
! ATGGTAATGATCGATATCGC+GGG - chr3_3:84378542-84378561 None:intergenic 40.0%
GTGTTGGAGGAAAATGGATA+TGG - chr3_3:84378612-84378631 None:intergenic 40.0%
AGTATACTCTGTCGTTGTGT+TGG - chr3_3:84378628-84378647 None:intergenic 40.0%
AACGACAGAGTATACTAGCT+AGG + chr3_3:84378632-84378651 Msa0479390:five_prime_UTR 40.0%
GAGTATACTAGCTAGGTTGT+TGG + chr3_3:84378639-84378658 Msa0479390:five_prime_UTR 40.0%
ATACTAGCTAGGTTGTTGGT+TGG + chr3_3:84378643-84378662 Msa0479390:five_prime_UTR 40.0%
TCAATGCAGTTTCAGATCGA+TGG - chr3_3:84378705-84378724 None:intergenic 40.0%
!! GAAAACAGAGTTTGGGGTTT+TGG - chr3_3:84378892-84378911 None:intergenic 40.0%
AGATCAAAAGGAGGATGTTG+TGG + chr3_3:84378958-84378977 Msa0479390:CDS 40.0%
CTTGCATTTCACAATGTGGT+TGG + chr3_3:84379201-84379220 Msa0479390:intron 40.0%
!! TGCCGATTCAATATCCAGTT+CGG - chr3_3:84379303-84379322 None:intergenic 40.0%
TATTGAATCGGCAAGATCTC+TGG + chr3_3:84379310-84379329 Msa0479390:intron 40.0%
!! ACTTTGGTGGGTTATTTAGG+CGG - chr3_3:84379378-84379397 None:intergenic 40.0%
CTACGGTTCAAATACTTTGG+TGG - chr3_3:84379391-84379410 None:intergenic 40.0%
CCGTAGCATGTGATTTGATT+TGG + chr3_3:84379405-84379424 Msa0479390:intron 40.0%
! TGCCCATTCTAGTTGGTTAA+CGG + chr3_3:84379462-84379481 Msa0479390:intron 40.0%
GACCGTTAACCAACTAGAAT+GGG - chr3_3:84379467-84379486 None:intergenic 40.0%
TGACCGTTAACCAACTAGAA+TGG - chr3_3:84379468-84379487 None:intergenic 40.0%
TGTTATTCATGTGATGCAGC+TGG + chr3_3:84379492-84379511 Msa0479390:intron 40.0%
! AATAAGTTGGAGAGGGGATT+CGG + chr3_3:84379533-84379552 Msa0479390:CDS 40.0%
CAAAAGGAATGTATGATGCC+GGG + chr3_3:84379592-84379611 Msa0479390:CDS 40.0%
AAAAGGAATGTATGATGCCG+GGG + chr3_3:84379593-84379612 Msa0479390:CDS 40.0%
!! TCGTGGGCAATTCTAGAATA+TGG + chr3_3:84379663-84379682 Msa0479390:CDS 40.0%
!! AATCTTGTGCTGGTTCCAAT+TGG - chr3_3:84379710-84379729 None:intergenic 40.0%
CGTTCCTCAGTAATTAACTC+AGG - chr3_3:84379960-84379979 None:intergenic 40.0%
GATACGTTCACTTGTAAGAG+GGG - chr3_3:84379984-84380003 None:intergenic 40.0%
GGATACGTTCACTTGTAAGA+GGG - chr3_3:84379985-84380004 None:intergenic 40.0%
AGGATACGTTCACTTGTAAG+AGG - chr3_3:84379986-84380005 None:intergenic 40.0%
! ATATGGGGATGAGCTTTTGT+GGG + chr3_3:84380199-84380218 Msa0479390:CDS 40.0%
AGTAAGCTTCTTCAAGGCAA+AGG + chr3_3:84380688-84380707 Msa0479390:CDS 40.0%
GTAAGCTTCTTCAAGGCAAA+GGG + chr3_3:84380689-84380708 Msa0479390:CDS 40.0%
!! AAGGGCCTTTCAAGTTCATA+TGG + chr3_3:84380707-84380726 Msa0479390:CDS 40.0%
CGGAACCATATGAACTTGAA+AGG - chr3_3:84380715-84380734 None:intergenic 40.0%
!!! TTTTCATAAAAAGTGCCCCG+GGG - chr3_3:84380887-84380906 None:intergenic 40.0%
AACGATCGTGACACTCTTTA+AGG - chr3_3:84380979-84380998 None:intergenic 40.0%
TCGAAGATCTGATGGTTTGA+AGG - chr3_3:84381278-84381297 None:intergenic 40.0%
ATGAATGCATACCTGAGATC+TGG - chr3_3:84381308-84381327 None:intergenic 40.0%
! TCCTCAGCATATGAGTTTTC+TGG + chr3_3:84381728-84381747 Msa0479390:CDS 40.0%
ACCAGAAAACTCATATGCTG+AGG - chr3_3:84381732-84381751 None:intergenic 40.0%
! TCAGCATATGAGTTTTCTGG+TGG + chr3_3:84381731-84381750 Msa0479390:CDS 40.0%
!! CAGCATATGAGTTTTCTGGT+GGG + chr3_3:84381732-84381751 Msa0479390:CDS 40.0%
!! ATGAGTTTTCTGGTGGGATA+TGG + chr3_3:84381738-84381757 Msa0479390:CDS 40.0%
CTCTGTGATGCACAAATTGT+GGG - chr3_3:84381773-84381792 None:intergenic 40.0%
! CAACCAGTTTTTGCATTAGC+AGG - chr3_3:84381807-84381826 None:intergenic 40.0%
CAAAAACTGGTTGCAAGGAT+GGG + chr3_3:84381814-84381833 Msa0479390:CDS 40.0%
ACAGCACTGTTATATGTGCT+TGG - chr3_3:84381957-84381976 None:intergenic 40.0%
!! CGACGCGGATTTAAGTTTTA+TGG + chr3_3:84382083-84382102 Msa0479390:three_prime_UTR 40.0%
CAATAGAATAAGCTCAGAGC+TGG - chr3_3:84382259-84382278 None:intergenic 40.0%
! TTGACTCATGCTAGCTTCGT+CGG - chr3_3:84378368-84378387 None:intergenic 45.0%
GTCGTTGTGTTGGAGGAAAA+TGG - chr3_3:84378618-84378637 None:intergenic 45.0%
ATACTCTGTCGTTGTGTTGG+AGG - chr3_3:84378625-84378644 None:intergenic 45.0%
CAAAAGGAGGATGTTGTGGT+TGG + chr3_3:84378962-84378981 Msa0479390:CDS 45.0%
!! GTTTGTGATTCTGGCTCTTG+TGG + chr3_3:84378993-84379012 Msa0479390:CDS 45.0%
! TTTTGATCAATGGCACCAGG+AGG - chr3_3:84379093-84379112 None:intergenic 45.0%
ATCGTGGTTTCATCGCAGTT+TGG - chr3_3:84379351-84379370 None:intergenic 45.0%
TTATTTAGGCGGCTCAATCG+TGG - chr3_3:84379367-84379386 None:intergenic 45.0%
ATGTTGCTGCCCATTCTAGT+TGG + chr3_3:84379455-84379474 Msa0479390:intron 45.0%
ACCAAACTTCATGTGATCCC+CGG - chr3_3:84379613-84379632 None:intergenic 45.0%
ACTGAGGCAGTAAAAGCCAT+AGG - chr3_3:84379639-84379658 None:intergenic 45.0%
GGAGATCAAATGGATGCTGT+TGG + chr3_3:84379684-84379703 Msa0479390:CDS 45.0%
AATGGATGCTGTTGGCCAAT+TGG + chr3_3:84379692-84379711 Msa0479390:CDS 45.0%
AACCAGCACAAGATTCTCTC+AGG + chr3_3:84379715-84379734 Msa0479390:CDS 45.0%
TCTCGTCAATGCTCATCCTT+CGG + chr3_3:84379752-84379771 Msa0479390:CDS 45.0%
TCAAAATCGATGTGGCAGGT+TGG + chr3_3:84379900-84379919 Msa0479390:intron 45.0%
CAACACTTGTGATCTGCAAC+AGG - chr3_3:84379930-84379949 None:intergenic 45.0%
CTGTTGCAGATCACAAGTGT+TGG + chr3_3:84379928-84379947 Msa0479390:CDS 45.0%
TTCAGCTGCAACATCTGATC+CGG - chr3_3:84380012-84380031 None:intergenic 45.0%
AGCAATGGCATCAGCATCTT+TGG + chr3_3:84380040-84380059 Msa0479390:CDS 45.0%
! ACTTTTGCGGACAAGCATAG+AGG + chr3_3:84380125-84380144 Msa0479390:CDS 45.0%
! GATATGGGGATGAGCTTTTG+TGG + chr3_3:84380198-84380217 Msa0479390:CDS 45.0%
AGGAATCATCACCTGTAGCA+TGG - chr3_3:84380241-84380260 None:intergenic 45.0%
TCCTACCTTCAGTATGTGAC+TGG + chr3_3:84380257-84380276 Msa0479390:CDS 45.0%
TTTGGCCAGTCACATACTGA+AGG - chr3_3:84380265-84380284 None:intergenic 45.0%
! CAGTATGTGACTGGCCAAAA+TGG + chr3_3:84380266-84380285 Msa0479390:CDS 45.0%
AGCTCTTCATACCTGAGTTC+CGG - chr3_3:84380348-84380367 None:intergenic 45.0%
AAGACCACACATTACAGCCT+CGG - chr3_3:84380762-84380781 None:intergenic 45.0%
!!! GTTCTGCTTTTTGTGGCTGT+TGG - chr3_3:84380797-84380816 None:intergenic 45.0%
!! TTTCATAAAAAGTGCCCCGG+GGG - chr3_3:84380886-84380905 None:intergenic 45.0%
GTCTGGAGGAACACAAACTA+TGG + chr3_3:84381053-84381072 Msa0479390:intron 45.0%
GTCTGATATGGGTGAGTGAA+TGG + chr3_3:84381152-84381171 Msa0479390:CDS 45.0%
GCTAAGAATGCAGATGCAAC+AGG - chr3_3:84381193-84381212 None:intergenic 45.0%
GCAAAGTCTCGAAGATCTGA+TGG - chr3_3:84381286-84381305 None:intergenic 45.0%
TTCCAGGCTGATTACGTGTT+GGG + chr3_3:84381699-84381718 Msa0479390:intron 45.0%
CCTCTGTGATGCACAAATTG+TGG - chr3_3:84381774-84381793 None:intergenic 45.0%
CCACAATTTGTGCATCACAG+AGG + chr3_3:84381771-84381790 Msa0479390:CDS 45.0%
GCAAAAACTGGTTGCAAGGA+TGG + chr3_3:84381813-84381832 Msa0479390:CDS 45.0%
AGCTACATTGGGATTCGGAT+CGG - chr3_3:84381859-84381878 None:intergenic 45.0%
CCAGTAGCTACATTGGGATT+CGG - chr3_3:84381864-84381883 None:intergenic 45.0%
AGTGCTCCAGTAGCTACATT+GGG - chr3_3:84381870-84381889 None:intergenic 45.0%
AAGTGCTCCAGTAGCTACAT+TGG - chr3_3:84381871-84381890 None:intergenic 45.0%
ACTCAAAAGAAGTTGCGACG+CGG + chr3_3:84382068-84382087 Msa0479390:three_prime_UTR 45.0%
ACTAACCTATCCAGACACCA+CGG - chr3_3:84382188-84382207 None:intergenic 45.0%
!!! GTGGTGTTGTGTTTTGTCGG+TGG - chr3_3:84378431-84378450 None:intergenic 50.0%
ATGGGGAGAAGGAGTCGAAA+TGG - chr3_3:84378561-84378580 None:intergenic 50.0%
!! GTGATTCTGGCTCTTGTGGT+CGG + chr3_3:84378997-84379016 Msa0479390:CDS 50.0%
TCGGCAAGATCTCTGGATCA+TGG + chr3_3:84379317-84379336 Msa0479390:intron 50.0%
TTACTGCCTCAGTGCTATCG+TGG + chr3_3:84379646-84379665 Msa0479390:CDS 50.0%
TACTGCCTCAGTGCTATCGT+GGG + chr3_3:84379647-84379666 Msa0479390:CDS 50.0%
AATTGCCCACGATAGCACTG+AGG - chr3_3:84379655-84379674 None:intergenic 50.0%
CACCTGAGAGAATCTTGTGC+TGG - chr3_3:84379720-84379739 None:intergenic 50.0%
CAGCACAAGATTCTCTCAGG+TGG + chr3_3:84379718-84379737 Msa0479390:CDS 50.0%
CAAGTGAACGTATCCTGTCC+CGG + chr3_3:84379990-84380009 Msa0479390:CDS 50.0%
TCAGCTGCAACATCTGATCC+GGG - chr3_3:84380011-84380030 None:intergenic 50.0%
AGCTGAAACTGCAGCAGCAA+TGG + chr3_3:84380025-84380044 Msa0479390:CDS 50.0%
GCCAGTCACATACTGAAGGT+AGG - chr3_3:84380261-84380280 None:intergenic 50.0%
CTCAATTTGGAAGCCCAACC+TGG + chr3_3:84380300-84380319 Msa0479390:CDS 50.0%
AAGCCCAACCTGGTTCAGTT+GGG + chr3_3:84380310-84380329 Msa0479390:CDS 50.0%
TGTCCCAACTGAACCAGGTT+GGG - chr3_3:84380316-84380335 None:intergenic 50.0%
TTGTCCCAACTGAACCAGGT+TGG - chr3_3:84380317-84380336 None:intergenic 50.0%
! CTTGTTGTCCCAACTGAACC+AGG - chr3_3:84380321-84380340 None:intergenic 50.0%
AGTTGGGACAACAAGCTTGC+CGG + chr3_3:84380326-84380345 Msa0479390:CDS 50.0%
TTTGTGGCTGTTGGAGAGTC+TGG - chr3_3:84380788-84380807 None:intergenic 50.0%
GAAATGCTAATGAGTGCCCC+CGG + chr3_3:84380867-84380886 Msa0479390:intron 50.0%
AAATGCTAATGAGTGCCCCC+GGG + chr3_3:84380868-84380887 Msa0479390:intron 50.0%
TCGAGACTTTGCCAGATCTC+AGG + chr3_3:84381294-84381313 Msa0479390:CDS 50.0%
CTTCCAGGCTGATTACGTGT+TGG + chr3_3:84381698-84381717 Msa0479390:intron 50.0%
AAACTGGTTGCAAGGATGGG+TGG + chr3_3:84381817-84381836 Msa0479390:CDS 50.0%
CCGAATCCCAATGTAGCTAC+TGG + chr3_3:84381861-84381880 Msa0479390:CDS 50.0%
! GTAGCTACTGGAGCACTTGT+TGG + chr3_3:84381873-84381892 Msa0479390:CDS 50.0%
! GCGTCGCAACTTCTTTTGAG+TGG - chr3_3:84382069-84382088 None:intergenic 50.0%
GAATAAGCTCAGAGCTGGTG+AGG - chr3_3:84382254-84382273 None:intergenic 50.0%
! CTCATGCTAGCTTCGTCGGT+GGG - chr3_3:84378364-84378383 None:intergenic 55.0%
! ACTCATGCTAGCTTCGTCGG+TGG - chr3_3:84378365-84378384 None:intergenic 55.0%
! GCTAGGTTGTTGGTTGGTGC+TGG + chr3_3:84378649-84378668 Msa0479390:five_prime_UTR 55.0%
! GATAAACCCGAACCGGTTCC+CGG + chr3_3:84379066-84379085 Msa0479390:CDS 55.0%
ATCAATGGCACCAGGAGGAC+CGG - chr3_3:84379088-84379107 None:intergenic 55.0%
GAGAGGGGATTCGGCTCTTA+AGG + chr3_3:84379542-84379561 Msa0479390:CDS 55.0%
GGGGATTCGGCTCTTAAGGA+TGG + chr3_3:84379546-84379565 Msa0479390:CDS 55.0%
GCCGGGGATCACATGAAGTT+TGG + chr3_3:84379609-84379628 Msa0479390:CDS 55.0%
TGCAACATCTGATCCGGGAC+AGG - chr3_3:84380006-84380025 None:intergenic 55.0%
! AGCTTTTGTGGGCAGCTACC+TGG + chr3_3:84380210-84380229 Msa0479390:CDS 55.0%
!! ACCTGGCTCTACCATGCTAC+AGG + chr3_3:84380227-84380246 Msa0479390:CDS 55.0%
ACCTGTAGCATGGTAGAGCC+AGG - chr3_3:84380231-84380250 None:intergenic 55.0%
GAAGCCCAACCTGGTTCAGT+TGG + chr3_3:84380309-84380328 Msa0479390:CDS 55.0%
CAACAAGCTTGCCGGAACTC+AGG + chr3_3:84380334-84380353 Msa0479390:CDS 55.0%
ACCACACATTACAGCCTCGG+CGG - chr3_3:84380759-84380778 None:intergenic 55.0%
AATGCTAATGAGTGCCCCCG+GGG + chr3_3:84380869-84380888 Msa0479390:intron 55.0%
TGCCCAACACGTAATCAGCC+TGG - chr3_3:84381704-84381723 None:intergenic 55.0%
! GCTACTGGAGCACTTGTTGG+TGG + chr3_3:84381876-84381895 Msa0479390:CDS 55.0%
GGATTGAAGGGCCGAAGATG+TGG - chr3_3:84382009-84382028 None:intergenic 55.0%
TGAGTGTGAACCGTGGTGTC+TGG + chr3_3:84382175-84382194 Msa0479390:three_prime_UTR 55.0%
GTGAACCGTGGTGTCTGGAT+AGG + chr3_3:84382180-84382199 Msa0479390:three_prime_UTR 55.0%
TGCGGCGAGAAATGGGGAGA+AGG - chr3_3:84378572-84378591 None:intergenic 60.0%
TCCCCATTTCTCGCCGCAAC+CGG + chr3_3:84378574-84378593 Msa0479390:five_prime_UTR 60.0%
ACCCGGTTGCGGCGAGAAAT+GGG - chr3_3:84378579-84378598 None:intergenic 60.0%
ATTTCTCGCCGCAACCGGGT+CGG + chr3_3:84378579-84378598 Msa0479390:five_prime_UTR 60.0%
GATATGGGTCTGACCCGACC+CGG - chr3_3:84378596-84378615 None:intergenic 60.0%
TCAATGGCACCAGGAGGACC+GGG - chr3_3:84379087-84379106 None:intergenic 60.0%
TCCGCCGAGGCTGTAATGTG+TGG + chr3_3:84380755-84380774 Msa0479390:CDS 60.0%
GTTGCAAGGATGGGTGGCAG+TGG + chr3_3:84381823-84381842 Msa0479390:CDS 60.0%
CCCGGTTGCGGCGAGAAATG+GGG - chr3_3:84378578-84378597 None:intergenic 65.0%
CCCCATTTCTCGCCGCAACC+GGG + chr3_3:84378575-84378594 Msa0479390:five_prime_UTR 65.0%
GACCCGGTTGCGGCGAGAAA+TGG - chr3_3:84378580-84378599 None:intergenic 65.0%
TTTCTCGCCGCAACCGGGTC+GGG + chr3_3:84378580-84378599 Msa0479390:five_prime_UTR 65.0%
AGGAGGACCGGGAACCGGTT+CGG - chr3_3:84379076-84379095 None:intergenic 65.0%
GGTCTGACCCGACCCGGTTG+CGG - chr3_3:84378590-84378609 None:intergenic 70.0%
! GGAGGACCGGGAACCGGTTC+GGG - chr3_3:84379075-84379094 None:intergenic 70.0%
! GAACCGGTTCCCGGTCCTCC+TGG + chr3_3:84379075-84379094 Msa0479390:CDS 70.0%
GCACCAGGAGGACCGGGAAC+CGG - chr3_3:84379081-84379100 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 84378357 84382387 84378357 ID=Msa0479390;Name=Msa0479390
chr3_3 mRNA 84378357 84382387 84378357 ID=Msa0479390-mRNA-1;Parent=Msa0479390;Name=Msa0479390-mRNA-1;_AED=0.03;_eAED=0.03;_QI=586|1|1|1|1|1|6|350|529
chr3_3 exon 84378357 84379162 84378357 ID=Msa0479390-mRNA-1:exon:23910;Parent=Msa0479390-mRNA-1
chr3_3 exon 84379511 84379794 84379511 ID=Msa0479390-mRNA-1:exon:23911;Parent=Msa0479390-mRNA-1
chr3_3 exon 84379918 84380355 84379918 ID=Msa0479390-mRNA-1:exon:23912;Parent=Msa0479390-mRNA-1
chr3_3 exon 84380674 84380821 84380674 ID=Msa0479390-mRNA-1:exon:23913;Parent=Msa0479390-mRNA-1
chr3_3 exon 84381149 84381315 84381149 ID=Msa0479390-mRNA-1:exon:23914;Parent=Msa0479390-mRNA-1
chr3_3 exon 84381705 84382387 84381705 ID=Msa0479390-mRNA-1:exon:23915;Parent=Msa0479390-mRNA-1
chr3_3 five_prime_UTR 84378357 84378942 84378357 ID=Msa0479390-mRNA-1:five_prime_utr;Parent=Msa0479390-mRNA-1
chr3_3 CDS 84378943 84379162 84378943 ID=Msa0479390-mRNA-1:cds;Parent=Msa0479390-mRNA-1
chr3_3 CDS 84379511 84379794 84379511 ID=Msa0479390-mRNA-1:cds;Parent=Msa0479390-mRNA-1
chr3_3 CDS 84379918 84380355 84379918 ID=Msa0479390-mRNA-1:cds;Parent=Msa0479390-mRNA-1
chr3_3 CDS 84380674 84380821 84380674 ID=Msa0479390-mRNA-1:cds;Parent=Msa0479390-mRNA-1
chr3_3 CDS 84381149 84381315 84381149 ID=Msa0479390-mRNA-1:cds;Parent=Msa0479390-mRNA-1
chr3_3 CDS 84381705 84382037 84381705 ID=Msa0479390-mRNA-1:cds;Parent=Msa0479390-mRNA-1
chr3_3 three_prime_UTR 84382038 84382387 84382038 ID=Msa0479390-mRNA-1:three_prime_utr;Parent=Msa0479390-mRNA-1
Gene Sequence

>Msa0479390

ATGAGAGAAAAATCGAGATCAAAAGGAGGATGTTGTGGTTGGTTTATTGCGTTTGTGATTCTGGCTCTTGTGGTCGGTGCTATTGTTTATGCTGTTAAGAAGAAAATCGATAACTCAAATTCAGATAAACCCGAACCGGTTCCCGGTCCTCCTGGTGCCATTGATCAAAAATATGCTTCTGCTCTCAAAACTGCAATGCAATTCTTCGACGTGCAAAAATCTGGCAAGTTAGAGAACAACAAAATAAGTTGGAGAGGGGATTCGGCTCTTAAGGATGGAAAGCAAGCAGATTTAGATCTAACAAAAGGAATGTATGATGCCGGGGATCACATGAAGTTTGGTTTTCCTATGGCTTTTACTGCCTCAGTGCTATCGTGGGCAATTCTAGAATATGGAGATCAAATGGATGCTGTTGGCCAATTGGAACCAGCACAAGATTCTCTCAGGTGGATCACTGATTTTCTCGTCAATGCTCATCCTTCGGAGAATGTTCTGTATATTCAGGTTGGTGATCCTGTTGCAGATCACAAGTGTTGGAATAGACCTGAGTTAATTACTGAGGAACGACCCCTCTTACAAGTGAACGTATCCTGTCCCGGATCAGATGTTGCAGCTGAAACTGCAGCAGCAATGGCATCAGCATCTTTGGTCTTCAAAAAGTCAGATGCTACATATTCAAGCACTCTCCTCAAGCATGCAAAACAGTTATTTACTTTTGCGGACAAGCATAGAGGAATTTACAGTGAGAATATACCTGAAGTTGCGACATATTATAACTCAACTGGATATGGGGATGAGCTTTTGTGGGCAGCTACCTGGCTCTACCATGCTACAGGTGATGATTCCTACCTTCAGTATGTGACTGGCCAAAATGGAGAAGATTATGCTCAATTTGGAAGCCCAACCTGGTTCAGTTGGGACAACAAGCTTGCCGGAACTCAGGTTTTGTTATCTAGAGTAAGCTTCTTCAAGGCAAAGGGCCTTTCAAGTTCATATGGTTCCGGCCTCCAAAATTATAGAAAATCCGCCGAGGCTGTAATGTGTGGTCTTCTTCCAGACTCTCCAACAGCCACAAAAAGCAGAACTGATAATGGTCTGATATGGGTGAGTGAATGGAACGCTTTGCAGCATCCTGTTGCATCTGCATTCTTAGCTTCTGTTTACAGTGACTATATGCTTACAACGCAGACTCCCAATATAAAATGTGATTCAGATTCCTTCAAACCATCAGATCTTCGAGACTTTGCCAGATCTCAGGCTGATTACGTGTTGGGCAAGAATCCTCAGCATATGAGTTTTCTGGTGGGATATGGAAAGAATTTCCCACAATTTGTGCATCACAGAGGAGCTTCAATTCCTGCTAATGCAAAAACTGGTTGCAAGGATGGGTGGCAGTGGCTTGACTCATCCGATCCGAATCCCAATGTAGCTACTGGAGCACTTGTTGGTGGACCTTTCTTAAATGAGACTTACATTGATTCTAGGAACAATTCTATGCAAGGAGAACCAAGCACATATAACAGTGCTGTCATAGTTGGTCTCTTATCAAGTTTAGTCACCACATCTTCGGCCCTTCAATCCTTCTCCTAA
Protein sequence

>Msa0479390

MREKSRSKGGCCGWFIAFVILALVVGAIVYAVKKKIDNSNSDKPEPVPGPPGAIDQKYASALKTAMQFFDVQKSGKLENNKISWRGDSALKDGKQADLDLTKGMYDAGDHMKFGFPMAFTASVLSWAILEYGDQMDAVGQLEPAQDSLRWITDFLVNAHPSENVLYIQVGDPVADHKCWNRPELITEERPLLQVNVSCPGSDVAAETAAAMASASLVFKKSDATYSSTLLKHAKQLFTFADKHRGIYSENIPEVATYYNSTGYGDELLWAATWLYHATGDDSYLQYVTGQNGEDYAQFGSPTWFSWDNKLAGTQVLLSRVSFFKAKGLSSSYGSGLQNYRKSAEAVMCGLLPDSPTATKSRTDNGLIWVSEWNALQHPVASAFLASVYSDYMLTTQTPNIKCDSDSFKPSDLRDFARSQADYVLGKNPQHMSFLVGYGKNFPQFVHHRGASIPANAKTGCKDGWQWLDSSDPNPNVATGALVGGPFLNETYIDSRNNSMQGEPSTYNSAVIVGLLSSLVTTSSALQSFS*