AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0435480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0435480 MtrunA17_Chr3g0142501 99.622 529 2 0 1 529 1 529 0.0 1095
Msa0435480 MtrunA17_Chr8g0372031 62.330 515 191 1 14 528 23 534 0.0 638
Msa0435480 MtrunA17_Chr5g0439311 44.798 471 246 9 58 519 32 497 5.18e-138 409
Msa0435480 MtrunA17_Chr4g0038131 43.154 482 255 7 58 528 29 502 3.11e-136 408
Msa0435480 MtrunA17_Chr8g0388051 46.482 469 237 10 58 518 29 491 2.21e-135 406
Msa0435480 MtrunA17_Chr3g0119371 43.524 471 252 9 58 519 41 506 6.17e-130 389
Msa0435480 MtrunA17_Chr1g0164201 44.563 469 239 10 58 518 26 481 1.10e-126 379
Msa0435480 MtrunA17_Chr5g0397201 43.644 472 245 7 58 523 41 497 5.32e-125 375
Msa0435480 MtrunA17_Chr3g0145261 42.827 474 250 9 56 519 23 485 2.52e-122 368
Msa0435480 MtrunA17_Chr3g0119821 42.004 469 253 8 56 516 34 491 7.87e-122 367
Msa0435480 MtrunA17_Chr3g0086311 41.453 468 252 7 58 520 31 481 9.00e-119 358
Msa0435480 MtrunA17_Chr1g0195271 41.079 482 266 9 51 525 33 503 3.45e-115 350
Msa0435480 MtrunA17_Chr2g0291461 41.698 530 267 14 14 518 77 589 2.97e-114 351
Msa0435480 MtrunA17_Chr5g0444721 39.219 538 242 14 58 518 35 564 1.53e-113 348
Msa0435480 MtrunA17_Chr8g0391391 41.300 477 247 11 56 516 29 488 3.11e-113 345
Msa0435480 MtrunA17_Chr3g0080171 41.880 468 248 10 58 516 26 478 4.44e-112 341
Msa0435480 MtrunA17_Chr4g0018301 40.343 466 255 8 58 516 46 495 3.67e-110 337
Msa0435480 MtrunA17_Chr3g0120661 39.212 533 285 15 14 524 82 597 5.32e-106 330
Msa0435480 MtrunA17_Chr5g0397181 40.686 408 222 5 117 519 1 393 1.95e-104 318
Msa0435480 MtrunA17_Chr4g0018361 38.703 478 260 12 56 516 26 487 1.11e-101 315
Msa0435480 MtrunA17_Chr3g0126111 36.981 530 282 18 18 519 76 581 2.95e-95 301
Msa0435480 MtrunA17_Chr3g0136381 40.385 364 199 5 58 420 31 377 1.85e-91 286
Msa0435480 MtrunA17_Chr4g0018341 39.024 287 155 7 236 516 2 274 1.35e-58 196
Msa0435480 MtrunA17_Chr4g0018351 43.085 188 104 2 53 239 26 211 2.81e-44 155
Msa0435480 MtrunA17_Chr1g0164181 43.889 180 97 1 98 273 3 182 4.85e-41 150
Msa0435480 MtrunA17_Chr1g0164181 40.476 168 93 4 354 516 164 329 5.71e-35 134
Msa0435480 MtrunA17_Chr4g0072811 44.586 157 86 1 373 528 19 175 2.80e-38 139
Msa0435480 MtrunA17_Chr7g0269571 35.227 176 98 3 366 526 43 217 2.35e-31 121
Msa0435480 MtrunA17_Chr3g0136371 47.778 90 43 2 421 506 2 91 3.76e-21 88.6
Msa0435480 MtrunA17_Chr4g0022271 37.405 131 71 4 375 500 29 153 6.09e-20 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0435480 AT1G19940.2 68.371 528 154 4 1 528 1 515 0.0 709
Msa0435480 AT1G19940.1 68.371 528 154 4 1 528 1 515 0.0 709
Msa0435480 AT1G75680.1 69.187 529 157 5 1 528 1 524 0.0 708
Msa0435480 AT1G19940.3 65.952 420 130 4 1 420 1 407 0.0 546
Msa0435480 AT4G11050.2 45.798 476 244 9 58 525 27 496 1.65e-139 414
Msa0435480 AT4G11050.3 46.008 476 243 10 58 525 27 496 9.95e-139 415
Msa0435480 AT4G11050.1 46.008 476 243 10 58 525 27 496 1.11e-138 415
Msa0435480 AT1G64390.1 44.676 479 251 9 58 528 26 498 1.54e-136 409
Msa0435480 AT2G32990.1 43.644 472 244 10 58 516 40 502 3.82e-131 392
Msa0435480 AT2G44540.1 44.397 473 247 7 52 518 28 490 1.71e-128 384
Msa0435480 AT2G44550.1 45.435 471 238 9 53 516 29 487 3.03e-128 383
Msa0435480 AT2G44560.1 45.032 473 244 8 52 518 28 490 4.74e-126 378
Msa0435480 AT1G48930.1 46.055 469 235 7 58 516 31 491 4.04e-125 380
Msa0435480 AT2G44570.1 42.887 471 252 9 55 518 31 491 3.85e-122 368
Msa0435480 AT4G23560.1 42.463 471 251 6 57 522 23 478 2.19e-119 360
Msa0435480 AT1G71380.1 42.706 473 248 9 52 516 19 476 1.15e-118 358
Msa0435480 AT4G02290.1 41.667 468 255 9 56 516 51 507 1.15e-118 360
Msa0435480 AT1G02800.1 41.983 474 255 10 55 521 41 501 6.30e-118 357
Msa0435480 AT3G43860.2 41.845 466 249 7 58 518 35 483 3.12e-117 355
Msa0435480 AT3G43860.1 41.845 466 249 7 58 518 35 483 3.12e-117 355
Msa0435480 AT1G22880.1 42.616 474 249 9 58 523 25 483 5.19e-117 354
Msa0435480 AT4G09740.1 42.340 470 251 7 58 522 24 478 6.86e-117 353
Msa0435480 AT4G39010.1 40.764 471 259 9 56 516 28 488 6.66e-115 349
Msa0435480 AT1G23210.1 40.000 470 254 9 58 515 29 482 5.90e-114 347
Msa0435480 AT1G70710.1 40.127 471 252 9 58 515 29 482 6.75e-114 347
Msa0435480 AT4G39000.1 39.496 476 268 9 51 516 19 484 6.04e-111 339
Msa0435480 AT5G49720.1 40.566 530 273 14 14 518 74 586 3.83e-108 336
Msa0435480 AT4G24260.1 43.149 489 244 14 58 522 109 587 9.64e-105 327
Msa0435480 AT4G38990.2 37.654 486 268 12 51 516 17 487 1.92e-100 312
Msa0435480 AT1G65610.1 36.484 529 298 13 14 521 82 593 3.20e-100 315
Msa0435480 AT1G22880.2 41.546 414 220 8 117 523 1 399 3.65e-99 305
Msa0435480 AT4G02290.2 40.148 406 226 8 117 516 1 395 1.44e-95 296
Msa0435480 AT2G44570.2 41.514 383 212 7 55 435 31 403 6.58e-89 279
Msa0435480 AT4G39010.2 39.516 372 209 8 56 421 28 389 9.00e-83 263
Msa0435480 AT1G22880.3 44.728 313 155 7 58 366 25 323 8.85e-71 230
Msa0435480 AT4G24260.3 42.119 387 193 13 58 420 109 488 8.10e-70 232
Msa0435480 AT4G24260.2 44.164 317 150 11 58 352 109 420 1.67e-63 214
Msa0435480 AT4G38990.1 36.311 347 183 7 51 392 17 330 1.47e-59 201

Find 183 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAACAGAGTTTGGGGTTT+TGG 0.147944 3_2:+88669731 None:intergenic
GTTTATTGCGTTTGTGATTC+TGG 0.168400 3_2:-88669636 Msa0435480:CDS
TATTATAACTCAACTGGATA+TGG 0.212670 3_2:-88668438 Msa0435480:CDS
TAATAACACATTTCTTATTT+AGG 0.225442 3_2:-88669846 Msa0435480:five_prime_UTR
TTTATATAGATGGTCTGATA+TGG 0.236900 3_2:-88667480 Msa0435480:intron
GAGCATAGTCTTCTCCATTT+TGG 0.237012 3_2:+88668340 None:intergenic
ACAACGATAATGTCTATATT+TGG 0.241703 3_2:+88669879 None:intergenic
ATGAGACTTACATTGATTCT+AGG 0.242483 3_2:-88666710 Msa0435480:CDS
GTACTTCCTTGTAAAATATA+TGG 0.249625 3_2:-88666342 Msa0435480:three_prime_UTR
TCCCCATTTCTCGCCGCAAC+CGG 0.259382 3_2:-88670045 Msa0435480:five_prime_UTR
TTGAGGGGTATAATGGTAAA+AGG 0.262319 3_2:+88670217 None:intergenic
GGAGAAGACTATGCTCAATT+TGG 0.277714 3_2:-88668333 Msa0435480:CDS
TAATGTCTATATTTGGAAAT+AGG 0.284072 3_2:+88669886 None:intergenic
CAAATGCAGAAAACAGAGTT+TGG 0.299311 3_2:+88669723 None:intergenic
GGAGAATGTTCTGTATATTC+AGG 0.309453 3_2:-88668847 Msa0435480:intron
TCGTGGGCAATTCTAGAATA+TGG 0.312428 3_2:-88668957 Msa0435480:CDS
AGCAATGGCATCAGCATCTT+TGG 0.319777 3_2:-88668580 Msa0435480:CDS
AGTTAGCAATGTATTTGTTT+GGG 0.320297 3_2:-88669805 Msa0435480:five_prime_UTR
GGAGGACCGGGAACCGGTTC+GGG 0.321906 3_2:+88669548 None:intergenic
TTTGTGGCTGTTGGAGAGTC+TGG 0.335910 3_2:+88667835 None:intergenic
GAGAGGGGATTCGGCTCTTA+AGG 0.338315 3_2:-88669078 Msa0435480:CDS
CAGTATGTGACTGGCCAAAA+TGG 0.350134 3_2:-88668354 Msa0435480:CDS
GCCGGGGATCACATGAAGTT+TGG 0.352977 3_2:-88669011 Msa0435480:CDS
CTTTCAAGTTCATATGGTTC+CGG 0.354604 3_2:-88667907 Msa0435480:CDS
GACCCGGTTGCGGCGAGAAA+TGG 0.355828 3_2:+88670042 None:intergenic
GAGTTAGCAATGTATTTGTT+TGG 0.360242 3_2:-88669806 Msa0435480:five_prime_UTR
GATAAACCCGAACCGGTTCC+CGG 0.365719 3_2:-88669554 Msa0435480:CDS
GTGTTGGAGGAAAATGGATA+TGG 0.365793 3_2:+88670010 None:intergenic
TTATAATATGTCGCAACTTC+AGG 0.368599 3_2:+88668453 None:intergenic
GGAGCTACATACTATAGTTT+AGG 0.374553 3_2:+88666587 None:intergenic
TGTCCCAACTGAACCAGGTT+GGG 0.383206 3_2:+88668307 None:intergenic
AGGAGGACCGGGAACCGGTT+CGG 0.385546 3_2:+88669547 None:intergenic
GTCGTTGTGTTGGAGGAAAA+TGG 0.386601 3_2:+88670004 None:intergenic
TTCTCATATCCAACTTCATA+AGG 0.387488 3_2:-88670167 Msa0435480:five_prime_UTR
GCTAGGTTGTTGGTTGGTGC+TGG 0.390689 3_2:-88669970 Msa0435480:five_prime_UTR
ACCCGGTTGCGGCGAGAAAT+GGG 0.395938 3_2:+88670043 None:intergenic
AAATGCAGAAAACAGAGTTT+GGG 0.396742 3_2:+88669724 None:intergenic
ATTATAACTCAACTGGATAT+GGG 0.400764 3_2:-88668437 Msa0435480:CDS
AATTGTTTGAAATCGTTAAA+CGG 0.407563 3_2:+88669942 None:intergenic
AAGGGCCTTTCAAGTTCATA+TGG 0.416309 3_2:-88667913 Msa0435480:CDS
TCCCACAATTTGTGCATCAC+AGG 0.417030 3_2:-88666851 Msa0435480:CDS
TTTCTCGCCGCAACCGGGTC+GGG 0.419432 3_2:-88670039 Msa0435480:five_prime_UTR
TCTCGTCAATGCTCATCCTT+CGG 0.427984 3_2:-88668868 Msa0435480:CDS
ACTAATAATACGTGATGATA+AGG 0.428647 3_2:+88666502 None:intergenic
AATAAGTTGGAGAGGGGATT+CGG 0.430660 3_2:-88669087 Msa0435480:CDS
AATGGATGCTGTTGGCCAAT+TGG 0.431030 3_2:-88668928 Msa0435480:CDS
TTCCAGGCTGATTACGTGTT+GGG 0.431458 3_2:-88666921 Msa0435480:intron
TTCAGCTGCAACATCTGATC+CGG 0.435202 3_2:+88668611 None:intergenic
ATCAATGGCACCAGGAGGAC+CGG 0.439759 3_2:+88669535 None:intergenic
GCGACATATTATAACTCAAC+TGG 0.441782 3_2:-88668444 Msa0435480:CDS
TGAGTGTGAACCGTGGTGTC+TGG 0.442330 3_2:-88666445 Msa0435480:three_prime_UTR
CCGAATCCCAATGTAGCTAC+TGG 0.444550 3_2:-88666759 Msa0435480:CDS
GTTGCAAGGATGGGTGGCAG+TGG 0.446186 3_2:-88666797 Msa0435480:CDS
TCTAGAATATGGAGATCAAA+TGG 0.446875 3_2:-88668946 Msa0435480:CDS
ATCTAGAGTAAGCTTCTTCA+AGG 0.446995 3_2:-88667938 Msa0435480:CDS
AGCTGAAACTGCAGCAGCAA+TGG 0.448020 3_2:-88668595 Msa0435480:CDS
CCCCATTTCTCGCCGCAACC+GGG 0.448967 3_2:-88670044 Msa0435480:five_prime_UTR
AAGTTTAGTCACCACATCTT+CGG 0.449573 3_2:-88666625 Msa0435480:CDS
AGTCATTAATTAATGTATAC+AGG 0.454381 3_2:-88666415 Msa0435480:three_prime_UTR
GCACCAGGAGGACCGGGAAC+CGG 0.455702 3_2:+88669542 None:intergenic
CATCACGTATTATTAGTGTA+TGG 0.456168 3_2:-88666496 Msa0435480:three_prime_UTR
TCGAGACTTTGCCAGATCTC+AGG 0.456961 3_2:-88667326 Msa0435480:intron
TTATATAGATGGTCTGATAT+GGG 0.457104 3_2:-88667479 Msa0435480:intron
AGTTGGGACAACAAGCTTGC+CGG 0.460646 3_2:-88668294 Msa0435480:CDS
CAACACTTGTGATCTGCAAC+AGG 0.466398 3_2:+88668693 None:intergenic
AATCTTGTGCTGGTTCCAAT+TGG 0.470000 3_2:+88668913 None:intergenic
TAGAGAACAACAAAATAAGT+TGG 0.470544 3_2:-88669100 Msa0435480:CDS
CCAGTAGCTACATTGGGATT+CGG 0.470664 3_2:+88666759 None:intergenic
CCCTGTGATGCACAAATTGT+GGG 0.472083 3_2:+88666850 None:intergenic
CTCAATTTGGAAGCCCAACC+TGG 0.472205 3_2:-88668320 Msa0435480:CDS
GTCTGATATGGGTGAGTGAA+TGG 0.473028 3_2:-88667468 Msa0435480:CDS
GCTAAGAATGCAGATGCAAC+AGG 0.473355 3_2:+88667430 None:intergenic
ATGAATGCATACCTGAGATC+TGG 0.474526 3_2:+88667315 None:intergenic
ACAGATCAATAACGTGATTA+CGG 0.475142 3_2:+88666283 None:intergenic
CTTGTTGTCCCAACTGAACC+AGG 0.475271 3_2:+88668302 None:intergenic
GGAAATGTCCCTTATGAAGT+TGG 0.475379 3_2:+88670158 None:intergenic
ATTTCTCGCCGCAACCGGGT+CGG 0.478416 3_2:-88670040 Msa0435480:five_prime_UTR
AGGATACGTTCACTTGTAAG+AGG 0.479664 3_2:+88668637 None:intergenic
ATACTCTGTCGTTGTGTTGG+AGG 0.482880 3_2:+88669997 None:intergenic
CAAAAGGAGGATGTTGTGGT+TGG 0.485199 3_2:-88669658 Msa0435480:CDS
TCAATGCAGTTTCAGATCGA+TGG 0.485525 3_2:+88669917 None:intergenic
TACTGCCTCGGTGCTATCGT+GGG 0.488542 3_2:-88668973 Msa0435480:CDS
GAACCGGTTCCCGGTCCTCC+TGG 0.489943 3_2:-88669545 Msa0435480:CDS
ATGGGGAGAAGGAGTCGAAA+TGG 0.490979 3_2:+88670061 None:intergenic
GGTCTGACCCGACCCGGTTG+CGG 0.492298 3_2:+88670032 None:intergenic
ACCTACTTACTTCTAAATCT+AGG 0.493860 3_2:-88670115 Msa0435480:five_prime_UTR
GTAGCTACTGGAGCACTTGT+TGG 0.494083 3_2:-88666747 Msa0435480:CDS
GTAAGCTTCTTCAAGGCAAA+GGG 0.494576 3_2:-88667931 Msa0435480:CDS
AGTATACTCTGTCGTTGTGT+TGG 0.494988 3_2:+88669994 None:intergenic
AACAACAAAATAAGTTGGAG+AGG 0.494998 3_2:-88669095 Msa0435480:CDS
AAATTCAGATAAACCCGAAC+CGG 0.495107 3_2:-88669561 Msa0435480:CDS
CAAAAGGAATGTATGATGCC+GGG 0.495516 3_2:-88669028 Msa0435480:CDS
GCAGATTTAGATCTAACAAA+AGG 0.496053 3_2:-88669044 Msa0435480:CDS
TCGAAGATCTGATGGTTTGA+AGG 0.496987 3_2:+88667345 None:intergenic
GAAGCCCAACCTGGTTCAGT+TGG 0.502198 3_2:-88668311 Msa0435480:CDS
CCCACAATTTGTGCATCACA+GGG 0.503590 3_2:-88666850 Msa0435480:CDS
GTGATTCTGGCTCTTGTGGT+CGG 0.505371 3_2:-88669623 Msa0435480:CDS
AAGCCCAACCTGGTTCAGTT+GGG 0.506162 3_2:-88668310 Msa0435480:CDS
ACAAAAGGAATGTATGATGC+CGG 0.506505 3_2:-88669029 Msa0435480:CDS
TATAACAGTGCTGTCATAGT+TGG 0.509805 3_2:-88666657 Msa0435480:CDS
ATACTAGCTAGGTTGTTGGT+TGG 0.510801 3_2:-88669976 Msa0435480:five_prime_UTR
TGACTCATGCTAGCGTCGGT+GGG 0.511117 3_2:+88670255 None:intergenic
TGCAACATCTGATCCGGGAC+AGG 0.511750 3_2:+88668617 None:intergenic
GAGTATACTAGCTAGGTTGT+TGG 0.514068 3_2:-88669980 Msa0435480:five_prime_UTR
GCTACTGGAGCACTTGTTGG+TGG 0.515300 3_2:-88666744 Msa0435480:CDS
ACCTGTAGCATGGTAGAGCC+AGG 0.516769 3_2:+88668392 None:intergenic
GTTAGCAATGTATTTGTTTG+GGG 0.523868 3_2:-88669804 Msa0435480:five_prime_UTR
TTGTCCCAACTGAACCAGGT+TGG 0.523981 3_2:+88668306 None:intergenic
AACCAGCACAAGATTCTCTC+AGG 0.525412 3_2:-88668905 Msa0435480:CDS
TAGTTTAGGAGAAGGATTGA+AGG 0.527196 3_2:+88666601 None:intergenic
AGCTCTTCATACCTGAGTTC+CGG 0.531252 3_2:+88668275 None:intergenic
CACCTGAGAGAATCTTGTGC+TGG 0.533013 3_2:+88668903 None:intergenic
TCTCATATCCAACTTCATAA+GGG 0.534299 3_2:-88670166 Msa0435480:five_prime_UTR
TTGACTCATGCTAGCGTCGG+TGG 0.535961 3_2:+88670254 None:intergenic
CCCCTGTGATGCACAAATTG+TGG 0.536207 3_2:+88666849 None:intergenic
AGTGCTCCAGTAGCTACATT+GGG 0.536888 3_2:+88666753 None:intergenic
CAACAAGCTTGCCGGAACTC+AGG 0.539769 3_2:-88668286 Msa0435480:intron
TCCTACCTTCAGTATGTGAC+TGG 0.540197 3_2:-88668363 Msa0435480:CDS
CTTCCAGGCTGATTACGTGT+TGG 0.540229 3_2:-88666922 Msa0435480:intron
CGGAACCATATGAACTTGAA+AGG 0.540605 3_2:+88667908 None:intergenic
AAGTGCTCCAGTAGCTACAT+TGG 0.543749 3_2:+88666752 None:intergenic
GCAAAGTCTCGAAGATCTGA+TGG 0.544007 3_2:+88667337 None:intergenic
TTACTGCCTCGGTGCTATCG+TGG 0.544348 3_2:-88668974 Msa0435480:CDS
ATGTAAGTCTCATTTAAGAA+AGG 0.549620 3_2:+88666720 None:intergenic
GTTTGTGATTCTGGCTCTTG+TGG 0.550904 3_2:-88669627 Msa0435480:CDS
AGTAAGCTTCTTCAAGGCAA+AGG 0.552883 3_2:-88667932 Msa0435480:CDS
ACCTGGCTCTACCATGCTAC+AGG 0.553331 3_2:-88668393 Msa0435480:CDS
ACCAAACTTCATGTGATCCC+CGG 0.556653 3_2:+88669010 None:intergenic
CAATAGAATAAGCTCAGAGC+TGG 0.556969 3_2:+88666364 None:intergenic
CAAGTGAACGTATCCTGTCC+CGG 0.560701 3_2:-88668630 Msa0435480:CDS
GTGAACCGTGGTGTCTGGAT+AGG 0.561179 3_2:-88666440 Msa0435480:three_prime_UTR
GGATTGAAGGGCCGAAGATG+TGG 0.569561 3_2:+88666614 None:intergenic
CTGTTGCAGATCACAAGTGT+TGG 0.571688 3_2:-88668692 Msa0435480:CDS
TCAATGGCACCAGGAGGACC+GGG 0.573055 3_2:+88669536 None:intergenic
ACAGCACTGTTATATGTGCT+TGG 0.573334 3_2:+88666666 None:intergenic
GGGGATTCGGCTCTTAAGGA+TGG 0.573397 3_2:-88669074 Msa0435480:CDS
TGCGGCGAGAAATGGGGAGA+AGG 0.575232 3_2:+88670050 None:intergenic
AGTTTAGGAGAAGGATTGAA+GGG 0.578741 3_2:+88666602 None:intergenic
ACATACTATAGTTTAGGAGA+AGG 0.578891 3_2:+88666593 None:intergenic
TTATAACTCAACTGGATATG+GGG 0.582247 3_2:-88668436 Msa0435480:CDS
AAGACCACACATTACAGCCT+CGG 0.582653 3_2:+88667861 None:intergenic
ACAACAAAATAAGTTGGAGA+GGG 0.586545 3_2:-88669094 Msa0435480:CDS
AGCTACATTGGGATTCGGAT+CGG 0.590300 3_2:+88666764 None:intergenic
GACTCATGCTAGCGTCGGTG+GGG 0.591120 3_2:+88670256 None:intergenic
TCTAGGAACAATTCTATGCA+AGG 0.591369 3_2:-88666693 Msa0435480:CDS
TCAGCTGCAACATCTGATCC+GGG 0.591508 3_2:+88668612 None:intergenic
GATATGGGTCTGACCCGACC+CGG 0.592804 3_2:+88670026 None:intergenic
TGTTGGAGGAAAATGGATAT+GGG 0.596187 3_2:+88670011 None:intergenic
CGTTCCTCAGTAATTAACTC+AGG 0.597205 3_2:+88668663 None:intergenic
GCCTAGATTTAGAAGTAAGT+AGG 0.598675 3_2:+88670114 None:intergenic
AGATCAAAAGGAGGATGTTG+TGG 0.599433 3_2:-88669662 Msa0435480:CDS
CCCGGTTGCGGCGAGAAATG+GGG 0.601279 3_2:+88670044 None:intergenic
GTAATCACGTTATTGATCTG+TGG 0.604164 3_2:-88666281 Msa0435480:three_prime_UTR
CAGCACAAGATTCTCTCAGG+TGG 0.615600 3_2:-88668902 Msa0435480:CDS
TTTGGCCAGTCACATACTGA+AGG 0.616951 3_2:+88668358 None:intergenic
AGGAATCATCACCTGTAGCA+TGG 0.618916 3_2:+88668382 None:intergenic
AATGCAGAAAACAGAGTTTG+GGG 0.620773 3_2:+88669725 None:intergenic
AAACTGGTTGCAAGGATGGG+TGG 0.621140 3_2:-88666803 Msa0435480:CDS
TATTACTGCATGTAGAATCA+CGG 0.626929 3_2:+88670137 None:intergenic
AAAAGGAATGTATGATGCCG+GGG 0.628087 3_2:-88669027 Msa0435480:CDS
ATGGTAATGAACGATATCGC+GGG 0.628262 3_2:+88670080 None:intergenic
AACGACAGAGTATACTAGCT+AGG 0.630471 3_2:-88669987 Msa0435480:five_prime_UTR
GGATACGTTCACTTGTAAGA+GGG 0.631666 3_2:+88668638 None:intergenic
GAATAAGCTCAGAGCTGGTG+AGG 0.639588 3_2:+88666369 None:intergenic
GGAGATCAAATGGATGCTGT+TGG 0.641613 3_2:-88668936 Msa0435480:CDS
TCCGCCGAGGCTGTAATGTG+TGG 0.641659 3_2:-88667865 Msa0435480:CDS
ACCAGAAAACTCATATGCTG+AGG 0.647665 3_2:+88666891 None:intergenic
ACCGAGGCAGTAAAAGCCAT+AGG 0.648080 3_2:+88668984 None:intergenic
CAACAAAATAAGTTGGAGAG+GGG 0.657191 3_2:-88669093 Msa0435480:CDS
ATATACAGAACATTCTCCGA+AGG 0.657437 3_2:+88668852 None:intergenic
GCCAGTCACATACTGAAGGT+AGG 0.663540 3_2:+88668362 None:intergenic
AGATTGACTCATGCTAGCGT+CGG 0.665494 3_2:+88670251 None:intergenic
ACCACACATTACAGCCTCGG+CGG 0.674391 3_2:+88667864 None:intergenic
GATACGTTCACTTGTAAGAG+GGG 0.676663 3_2:+88668639 None:intergenic
AATGGTAATGAACGATATCG+CGG 0.691941 3_2:+88670079 None:intergenic
CCACAATTTGTGCATCACAG+GGG 0.697583 3_2:-88666849 Msa0435480:CDS
TAGACCTGAGTTAATTACTG+AGG 0.715470 3_2:-88668667 Msa0435480:CDS
ACTCAAAAGAAGTTGCGACG+CGG 0.717202 3_2:-88666552 Msa0435480:three_prime_UTR
AAATTATAGAAAATCCGCCG+AGG 0.730261 3_2:-88667878 Msa0435480:CDS
ACTAGCCTATCCAGACACCA+CGG 0.756467 3_2:+88666435 None:intergenic
AATTGCCCACGATAGCACCG+AGG 0.782103 3_2:+88668968 None:intergenic
TGAAGTTGGATATGAGAACG+TGG 0.785477 3_2:+88670172 None:intergenic
AATATATTGAGTGTGAACCG+TGG 0.788543 3_2:-88666452 Msa0435480:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATAAAAAAAAACACTT+CGG + chr3_2:88668346-88668365 None:intergenic 10.0%
!! TAGAAATATATTACTAAAAA+TGG + chr3_2:88668978-88668997 None:intergenic 10.0%
!! TATAAAACATTTAATGTTAT+TGG + chr3_2:88669373-88669392 None:intergenic 10.0%
!!! TAATAACACATTTCTTATTT+AGG - chr3_2:88666668-88666687 Msa0435480:CDS 15.0%
!!! TTCTTTTTCTTTTATATAGA+TGG - chr3_2:88669024-88669043 Msa0435480:CDS 15.0%
!! GTAAATTCTTCTTATATTAA+GGG + chr3_2:88669253-88669272 None:intergenic 15.0%
!!! AGGAGTTTATTTTTTTTTTT+TGG - chr3_2:88669288-88669307 Msa0435480:intron 15.0%
!! TTAATTAGTATAAAATTGAG+TGG - chr3_2:88669330-88669349 Msa0435480:intron 15.0%
!!! TTTAATGTTATTGGTTTAAT+TGG + chr3_2:88669364-88669383 None:intergenic 15.0%
!! TTTAGTATAAATTTACATGT+AGG + chr3_2:88669396-88669415 None:intergenic 15.0%
!! ATTTATCTGACATTAAATAA+AGG - chr3_2:88669417-88669436 Msa0435480:intron 15.0%
!! TTTATCTGACATTAAATAAA+GGG - chr3_2:88669418-88669437 Msa0435480:intron 15.0%
!!! AATTGTTTGAAATCGTTAAA+CGG + chr3_2:88666575-88666594 None:intergenic 20.0%
!! TAATGTCTATATTTGGAAAT+AGG + chr3_2:88666631-88666650 None:intergenic 20.0%
!!! ATATTCCTTTTTTTCATTCT+CGG - chr3_2:88667060-88667079 Msa0435480:intron 20.0%
!!! AAAACAGTTATTTACTTTTG+CGG - chr3_2:88668006-88668025 Msa0435480:intron 20.0%
!!! AATAAGTAGAAGTATCATTT+AGG + chr3_2:88668432-88668451 None:intergenic 20.0%
!! CTAATCAGATTATAAGTTAA+GGG + chr3_2:88668903-88668922 None:intergenic 20.0%
!!! AATAGTTTTATTAGATAGTC+TGG - chr3_2:88668930-88668949 Msa0435480:CDS 20.0%
!!! TCTGAATCACATTTTATATT+GGG + chr3_2:88669147-88669166 None:intergenic 20.0%
!!! ATCTGAATCACATTTTATAT+TGG + chr3_2:88669148-88669167 None:intergenic 20.0%
!! GGTAAATTCTTCTTATATTA+AGG + chr3_2:88669254-88669273 None:intergenic 20.0%
!! AGTCATTAATTAATGTATAC+AGG - chr3_2:88670099-88670118 Msa0435480:five_prime_UTR 20.0%
!!! AATCAACCATATATTTTACA+AGG + chr3_2:88670181-88670200 None:intergenic 20.0%
!!! ATTCTTTTTGTTATTGTTGT+TGG - chr3_2:88670198-88670217 Msa0435480:five_prime_UTR 20.0%
! ACAACGATAATGTCTATATT+TGG + chr3_2:88666638-88666657 None:intergenic 25.0%
! AGTTAGCAATGTATTTGTTT+GGG - chr3_2:88666709-88666728 Msa0435480:CDS 25.0%
!!! AGAAGCATATTTTTGATCAA+TGG + chr3_2:88666997-88667016 None:intergenic 25.0%
! TTGTGAAATGCAAGAAATAA+AGG + chr3_2:88667089-88667108 None:intergenic 25.0%
!!! TAATGTTTTAAAAACCGAAC+TGG - chr3_2:88667180-88667199 Msa0435480:intron 25.0%
!!! TGGTTTTGAAAACATTGTTT+TGG - chr3_2:88667319-88667338 Msa0435480:intron 25.0%
! TAGAGAACAACAAAATAAGT+TGG - chr3_2:88667414-88667433 Msa0435480:CDS 25.0%
! TTCATTTATCAAAATCGATG+TGG - chr3_2:88667786-88667805 Msa0435480:intron 25.0%
! TATTATAACTCAACTGGATA+TGG - chr3_2:88668076-88668095 Msa0435480:intron 25.0%
! ATTATAACTCAACTGGATAT+GGG - chr3_2:88668077-88668096 Msa0435480:intron 25.0%
! TAGAATTTGGAAACAAGATT+CGG + chr3_2:88668266-88668285 None:intergenic 25.0%
! TTGTTTCCAAATTCTAAACT+AGG - chr3_2:88668270-88668289 Msa0435480:intron 25.0%
!! AATGATCCTAGTTTAGAATT+TGG + chr3_2:88668279-88668298 None:intergenic 25.0%
! AATGCTTTCATGTATATACT+AGG - chr3_2:88668468-88668487 Msa0435480:CDS 25.0%
! ATGCTTTCATGTATATACTA+GGG - chr3_2:88668469-88668488 Msa0435480:CDS 25.0%
!! TCTGACTTGATATTAACTAA+TGG - chr3_2:88668738-88668757 Msa0435480:intron 25.0%
!! CTGACTTGATATTAACTAAT+GGG - chr3_2:88668739-88668758 Msa0435480:intron 25.0%
! AATTTGTGTATTCAATGCAT+TGG - chr3_2:88668799-88668818 Msa0435480:intron 25.0%
! GCTAATCAGATTATAAGTTA+AGG + chr3_2:88668904-88668923 None:intergenic 25.0%
! TTTATATAGATGGTCTGATA+TGG - chr3_2:88669034-88669053 Msa0435480:CDS 25.0%
! TTATATAGATGGTCTGATAT+GGG - chr3_2:88669035-88669054 Msa0435480:CDS 25.0%
!!! TTTTTTTTTGGTACAGATCA+AGG - chr3_2:88669300-88669319 Msa0435480:intron 25.0%
!!! AAGAAATTGTGCGTATTTTT+TGG + chr3_2:88669506-88669525 None:intergenic 25.0%
! TACGCACAATTTCTTATAAT+AGG - chr3_2:88669511-88669530 Msa0435480:CDS 25.0%
! ACGCACAATTTCTTATAATA+GGG - chr3_2:88669512-88669531 Msa0435480:CDS 25.0%
! ATGTAAGTCTCATTTAAGAA+AGG + chr3_2:88669797-88669816 None:intergenic 25.0%
! ACTAATAATACGTGATGATA+AGG + chr3_2:88670015-88670034 None:intergenic 25.0%
! GTACTTCCTTGTAAAATATA+TGG - chr3_2:88670172-88670191 Msa0435480:five_prime_UTR 25.0%
TTCTCATATCCAACTTCATA+AGG - chr3_2:88666347-88666366 Msa0435480:three_prime_UTR 30.0%
TCTCATATCCAACTTCATAA+GGG - chr3_2:88666348-88666367 Msa0435480:three_prime_UTR 30.0%
TATTACTGCATGTAGAATCA+CGG + chr3_2:88666380-88666399 None:intergenic 30.0%
ACCTACTTACTTCTAAATCT+AGG - chr3_2:88666399-88666418 Msa0435480:three_prime_UTR 30.0%
GAGTTAGCAATGTATTTGTT+TGG - chr3_2:88666708-88666727 Msa0435480:CDS 30.0%
GTTAGCAATGTATTTGTTTG+GGG - chr3_2:88666710-88666729 Msa0435480:CDS 30.0%
AAATGCAGAAAACAGAGTTT+GGG + chr3_2:88666793-88666812 None:intergenic 30.0%
AGAGAAAAATCGAGATCAAA+AGG - chr3_2:88666840-88666859 Msa0435480:CDS 30.0%
ATTTCTTGCATTTCACAATG+TGG - chr3_2:88667091-88667110 Msa0435480:intron 30.0%
!! CAATGTGGTTGGTTTATTAT+AGG - chr3_2:88667106-88667125 Msa0435480:intron 30.0%
!! AATACTTTGGTGGGTTATTT+AGG + chr3_2:88667275-88667294 None:intergenic 30.0%
! AACAACAAAATAAGTTGGAG+AGG - chr3_2:88667419-88667438 Msa0435480:CDS 30.0%
! ACAACAAAATAAGTTGGAGA+GGG - chr3_2:88667420-88667439 Msa0435480:CDS 30.0%
GCAGATTTAGATCTAACAAA+AGG - chr3_2:88667470-88667489 Msa0435480:CDS 30.0%
! TCTAGAATATGGAGATCAAA+TGG - chr3_2:88667568-88667587 Msa0435480:intron 30.0%
! TTCTGTATATTCAGGTTAGT+TGG - chr3_2:88667675-88667694 Msa0435480:intron 30.0%
TTATAATATGTCGCAACTTC+AGG + chr3_2:88668064-88668083 None:intergenic 30.0%
TTATAACTCAACTGGATATG+GGG - chr3_2:88668078-88668097 Msa0435480:intron 30.0%
GTCTATTCTATGTAATGTGT+AGG + chr3_2:88668381-88668400 None:intergenic 30.0%
TAGGATAAGATAATGCCATA+AGG + chr3_2:88668413-88668432 None:intergenic 30.0%
TGCTTTCATGTATATACTAG+GGG - chr3_2:88668470-88668489 Msa0435480:CDS 30.0%
ATAATCCTTCTTCTTAATGC+AGG - chr3_2:88668546-88668565 Msa0435480:CDS 30.0%
!! TTTTCTATAATTTTGGAGGC+CGG + chr3_2:88668629-88668648 None:intergenic 30.0%
! CGGATTTTCTATAATTTTGG+AGG + chr3_2:88668633-88668652 None:intergenic 30.0%
!!! AATTTTCATAAAAAGTGCCC+CGG + chr3_2:88668783-88668802 None:intergenic 30.0%
!!! AGTTTTATTAGATAGTCTGG+AGG - chr3_2:88668933-88668952 Msa0435480:CDS 30.0%
! TTTTTGTAGAATACTCTCTC+TGG - chr3_2:88669227-88669246 Msa0435480:intron 30.0%
TTTACCAAAATCACAGATCA+AGG - chr3_2:88669268-88669287 Msa0435480:intron 30.0%
AAAACTTGTCTAATACTTCC+AGG - chr3_2:88669577-88669596 Msa0435480:CDS 30.0%
!! ATGAGACTTACATTGATTCT+AGG - chr3_2:88669804-88669823 Msa0435480:five_prime_UTR 30.0%
ACATACTATAGTTTAGGAGA+AGG + chr3_2:88669924-88669943 None:intergenic 30.0%
!! CTTTTGAGTGGAATTGAATA+TGG + chr3_2:88669951-88669970 None:intergenic 30.0%
CATCACGTATTATTAGTGTA+TGG - chr3_2:88670018-88670037 Msa0435480:five_prime_UTR 30.0%
ACAGATCAATAACGTGATTA+CGG + chr3_2:88670234-88670253 None:intergenic 30.0%
! TTGAGGGGTATAATGGTAAA+AGG + chr3_2:88666300-88666319 None:intergenic 35.0%
GCCTAGATTTAGAAGTAAGT+AGG + chr3_2:88666403-88666422 None:intergenic 35.0%
! AATGGTAATGAACGATATCG+CGG + chr3_2:88666438-88666457 None:intergenic 35.0%
TGTTGGAGGAAAATGGATAT+GGG + chr3_2:88666506-88666525 None:intergenic 35.0%
AATGCAGAAAACAGAGTTTG+GGG + chr3_2:88666792-88666811 None:intergenic 35.0%
CAAATGCAGAAAACAGAGTT+TGG + chr3_2:88666794-88666813 None:intergenic 35.0%
GAAAAATCGAGATCAAAAGG+AGG - chr3_2:88666843-88666862 Msa0435480:CDS 35.0%
GTTTATTGCGTTTGTGATTC+TGG - chr3_2:88666878-88666897 Msa0435480:CDS 35.0%
AAATTCAGATAAACCCGAAC+CGG - chr3_2:88666953-88666972 Msa0435480:intron 35.0%
!! TATTTTTGATCAATGGCACC+AGG + chr3_2:88666990-88667009 None:intergenic 35.0%
GGTAACCGAGAATGAAAAAA+AGG + chr3_2:88667068-88667087 None:intergenic 35.0%
AACCGAACTGGATATTGAAT+CGG - chr3_2:88667192-88667211 Msa0435480:intron 35.0%
TACGGTTCAAATACTTTGGT+GGG + chr3_2:88667284-88667303 None:intergenic 35.0%
ATGCTACGGTTCAAATACTT+TGG + chr3_2:88667288-88667307 None:intergenic 35.0%
CCAAATCAAATCACATGCTA+CGG + chr3_2:88667302-88667321 None:intergenic 35.0%
GACCATTAACCAACTAGAAT+GGG + chr3_2:88667361-88667380 None:intergenic 35.0%
TGACCATTAACCAACTAGAA+TGG + chr3_2:88667362-88667381 None:intergenic 35.0%
! CAACAAAATAAGTTGGAGAG+GGG - chr3_2:88667421-88667440 Msa0435480:CDS 35.0%
ACAAAAGGAATGTATGATGC+CGG - chr3_2:88667485-88667504 Msa0435480:intron 35.0%
!!! CATGAAGTTTGGTTTTCCTA+TGG - chr3_2:88667514-88667533 Msa0435480:intron 35.0%
ATATACAGAACATTCTCCGA+AGG + chr3_2:88667665-88667684 None:intergenic 35.0%
GGAGAATGTTCTGTATATTC+AGG - chr3_2:88667667-88667686 Msa0435480:intron 35.0%
TTTATCAAAATCGATGTGGC+AGG - chr3_2:88667790-88667809 Msa0435480:intron 35.0%
TAGACCTGAGTTAATTACTG+AGG - chr3_2:88667847-88667866 Msa0435480:CDS 35.0%
! ATAACTGTTTTGCATGCTTG+AGG + chr3_2:88667997-88668016 None:intergenic 35.0%
GCGACATATTATAACTCAAC+TGG - chr3_2:88668070-88668089 Msa0435480:intron 35.0%
ATAGACTCAATCAAGCCTTA+TGG - chr3_2:88668395-88668414 Msa0435480:CDS 35.0%
CAAAACCTGCATTAAGAAGA+AGG + chr3_2:88668554-88668573 None:intergenic 35.0%
! ATCTAGAGTAAGCTTCTTCA+AGG - chr3_2:88668576-88668595 Msa0435480:CDS 35.0%
!! CTTTCAAGTTCATATGGTTC+CGG - chr3_2:88668607-88668626 Msa0435480:CDS 35.0%
!! CGGCGGATTTTCTATAATTT+TGG + chr3_2:88668636-88668655 None:intergenic 35.0%
AAATTATAGAAAATCCGCCG+AGG - chr3_2:88668636-88668655 Msa0435480:CDS 35.0%
!!! ACTATCAGTTCTGCTTTTTG+TGG + chr3_2:88668698-88668717 None:intergenic 35.0%
ATCAAGTCAGATAGCATTCA+AGG + chr3_2:88668729-88668748 None:intergenic 35.0%
!!! ATTTTCATAAAAAGTGCCCC+GGG + chr3_2:88668782-88668801 None:intergenic 35.0%
AACGATCGTAACACTCTTTA+AGG + chr3_2:88668873-88668892 None:intergenic 35.0%
! AACTCCTTGATCTGTGATTT+TGG + chr3_2:88669275-88669294 None:intergenic 35.0%
ATAGGGATCAGAGATAGTAT+CGG - chr3_2:88669529-88669548 Msa0435480:CDS 35.0%
ATTCCTGCTAATGCAAAAAC+TGG - chr3_2:88669695-88669714 Msa0435480:exon 35.0%
TAATGCAAAAACTGGTTGCA+AGG - chr3_2:88669703-88669722 Msa0435480:five_prime_UTR 35.0%
TCTAGGAACAATTCTATGCA+AGG - chr3_2:88669821-88669840 Msa0435480:five_prime_UTR 35.0%
TATAACAGTGCTGTCATAGT+TGG - chr3_2:88669857-88669876 Msa0435480:five_prime_UTR 35.0%
AAGTTTAGTCACCACATCTT+CGG - chr3_2:88669889-88669908 Msa0435480:five_prime_UTR 35.0%
AGTTTAGGAGAAGGATTGAA+GGG + chr3_2:88669915-88669934 None:intergenic 35.0%
TAGTTTAGGAGAAGGATTGA+AGG + chr3_2:88669916-88669935 None:intergenic 35.0%
GGAGCTACATACTATAGTTT+AGG + chr3_2:88669930-88669949 None:intergenic 35.0%
AATATATTGAGTGTGAACCG+TGG - chr3_2:88670062-88670081 Msa0435480:five_prime_UTR 35.0%
GTAATCACGTTATTGATCTG+TGG - chr3_2:88670233-88670252 Msa0435480:five_prime_UTR 35.0%
!! GTGGATTTTGAGGGGTATAA+TGG + chr3_2:88666307-88666326 None:intergenic 40.0%
!! TTTTGTCGGTGGATTTTGAG+GGG + chr3_2:88666315-88666334 None:intergenic 40.0%
!! GTTTTGTCGGTGGATTTTGA+GGG + chr3_2:88666316-88666335 None:intergenic 40.0%
!! TGTTTTGTCGGTGGATTTTG+AGG + chr3_2:88666317-88666336 None:intergenic 40.0%
!!! AACGTGGTGTTGTGTTTTGT+CGG + chr3_2:88666329-88666348 None:intergenic 40.0%
TGAAGTTGGATATGAGAACG+TGG + chr3_2:88666345-88666364 None:intergenic 40.0%
GGAAATGTCCCTTATGAAGT+TGG + chr3_2:88666359-88666378 None:intergenic 40.0%
! ATGGTAATGAACGATATCGC+GGG + chr3_2:88666437-88666456 None:intergenic 40.0%
GTGTTGGAGGAAAATGGATA+TGG + chr3_2:88666507-88666526 None:intergenic 40.0%
AGTATACTCTGTCGTTGTGT+TGG + chr3_2:88666523-88666542 None:intergenic 40.0%
AACGACAGAGTATACTAGCT+AGG - chr3_2:88666527-88666546 Msa0435480:three_prime_UTR 40.0%
GAGTATACTAGCTAGGTTGT+TGG - chr3_2:88666534-88666553 Msa0435480:three_prime_UTR 40.0%
ATACTAGCTAGGTTGTTGGT+TGG - chr3_2:88666538-88666557 Msa0435480:three_prime_UTR 40.0%
TCAATGCAGTTTCAGATCGA+TGG + chr3_2:88666600-88666619 None:intergenic 40.0%
!! GAAAACAGAGTTTGGGGTTT+TGG + chr3_2:88666786-88666805 None:intergenic 40.0%
AGATCAAAAGGAGGATGTTG+TGG - chr3_2:88666852-88666871 Msa0435480:CDS 40.0%
CTTGCATTTCACAATGTGGT+TGG - chr3_2:88667095-88667114 Msa0435480:intron 40.0%
!! TGCCGATTCAATATCCAGTT+CGG + chr3_2:88667197-88667216 None:intergenic 40.0%
TATTGAATCGGCAAGATCTC+TGG - chr3_2:88667204-88667223 Msa0435480:intron 40.0%
!! ACTTTGGTGGGTTATTTAGG+CGG + chr3_2:88667272-88667291 None:intergenic 40.0%
CTACGGTTCAAATACTTTGG+TGG + chr3_2:88667285-88667304 None:intergenic 40.0%
CCGTAGCATGTGATTTGATT+TGG - chr3_2:88667299-88667318 Msa0435480:intron 40.0%
! TGCCCATTCTAGTTGGTTAA+TGG - chr3_2:88667356-88667375 Msa0435480:CDS 40.0%
TGTTATTCATGTGATGCAGC+TGG - chr3_2:88667386-88667405 Msa0435480:CDS 40.0%
! AATAAGTTGGAGAGGGGATT+CGG - chr3_2:88667427-88667446 Msa0435480:CDS 40.0%
CAAAAGGAATGTATGATGCC+GGG - chr3_2:88667486-88667505 Msa0435480:intron 40.0%
AAAAGGAATGTATGATGCCG+GGG - chr3_2:88667487-88667506 Msa0435480:intron 40.0%
!! TCGTGGGCAATTCTAGAATA+TGG - chr3_2:88667557-88667576 Msa0435480:intron 40.0%
!! AATCTTGTGCTGGTTCCAAT+TGG + chr3_2:88667604-88667623 None:intergenic 40.0%
CGTTCCTCAGTAATTAACTC+AGG + chr3_2:88667854-88667873 None:intergenic 40.0%
GATACGTTCACTTGTAAGAG+GGG + chr3_2:88667878-88667897 None:intergenic 40.0%
GGATACGTTCACTTGTAAGA+GGG + chr3_2:88667879-88667898 None:intergenic 40.0%
AGGATACGTTCACTTGTAAG+AGG + chr3_2:88667880-88667899 None:intergenic 40.0%
! ATATGGGGATGAGCTTTTGT+GGG - chr3_2:88668093-88668112 Msa0435480:intron 40.0%
! GAGCATAGTCTTCTCCATTT+TGG + chr3_2:88668177-88668196 None:intergenic 40.0%
GGAGAAGACTATGCTCAATT+TGG - chr3_2:88668181-88668200 Msa0435480:intron 40.0%
AGTAAGCTTCTTCAAGGCAA+AGG - chr3_2:88668582-88668601 Msa0435480:CDS 40.0%
GTAAGCTTCTTCAAGGCAAA+GGG - chr3_2:88668583-88668602 Msa0435480:CDS 40.0%
!! AAGGGCCTTTCAAGTTCATA+TGG - chr3_2:88668601-88668620 Msa0435480:CDS 40.0%
CGGAACCATATGAACTTGAA+AGG + chr3_2:88668609-88668628 None:intergenic 40.0%
!!! TTTTCATAAAAAGTGCCCCG+GGG + chr3_2:88668781-88668800 None:intergenic 40.0%
TCGAAGATCTGATGGTTTGA+AGG + chr3_2:88669172-88669191 None:intergenic 40.0%
ATGAATGCATACCTGAGATC+TGG + chr3_2:88669202-88669221 None:intergenic 40.0%
! TCCTCAGCATATGAGTTTTC+TGG - chr3_2:88669622-88669641 Msa0435480:CDS 40.0%
ACCAGAAAACTCATATGCTG+AGG + chr3_2:88669626-88669645 None:intergenic 40.0%
! TCAGCATATGAGTTTTCTGG+TGG - chr3_2:88669625-88669644 Msa0435480:CDS 40.0%
!! CAGCATATGAGTTTTCTGGT+GGG - chr3_2:88669626-88669645 Msa0435480:CDS 40.0%
!! ATGAGTTTTCTGGTGGGATA+TGG - chr3_2:88669632-88669651 Msa0435480:CDS 40.0%
! CAACCAGTTTTTGCATTAGC+AGG + chr3_2:88669701-88669720 None:intergenic 40.0%
CAAAAACTGGTTGCAAGGAT+GGG - chr3_2:88669708-88669727 Msa0435480:five_prime_UTR 40.0%
ACAGCACTGTTATATGTGCT+TGG + chr3_2:88669851-88669870 None:intergenic 40.0%
!! CGACGCGGATTTAAGTTTTA+TGG - chr3_2:88669977-88669996 Msa0435480:five_prime_UTR 40.0%
CAATAGAATAAGCTCAGAGC+TGG + chr3_2:88670153-88670172 None:intergenic 40.0%
! AGATTGACTCATGCTAGCGT+CGG + chr3_2:88666266-88666285 None:intergenic 45.0%
GTCGTTGTGTTGGAGGAAAA+TGG + chr3_2:88666513-88666532 None:intergenic 45.0%
ATACTCTGTCGTTGTGTTGG+AGG + chr3_2:88666520-88666539 None:intergenic 45.0%
CAAAAGGAGGATGTTGTGGT+TGG - chr3_2:88666856-88666875 Msa0435480:CDS 45.0%
!! GTTTGTGATTCTGGCTCTTG+TGG - chr3_2:88666887-88666906 Msa0435480:CDS 45.0%
! TTTTGATCAATGGCACCAGG+AGG + chr3_2:88666987-88667006 None:intergenic 45.0%
ATCGTGGTTTCATCGCAGTT+TGG + chr3_2:88667245-88667264 None:intergenic 45.0%
TTATTTAGGCGGCTCAATCG+TGG + chr3_2:88667261-88667280 None:intergenic 45.0%
ATGTTGCTGCCCATTCTAGT+TGG - chr3_2:88667349-88667368 Msa0435480:CDS 45.0%
ACCAAACTTCATGTGATCCC+CGG + chr3_2:88667507-88667526 None:intergenic 45.0%
! TCCTATGGCTTTTACTGCCT+CGG - chr3_2:88667529-88667548 Msa0435480:intron 45.0%
GGAGATCAAATGGATGCTGT+TGG - chr3_2:88667578-88667597 Msa0435480:intron 45.0%
AATGGATGCTGTTGGCCAAT+TGG - chr3_2:88667586-88667605 Msa0435480:intron 45.0%
AACCAGCACAAGATTCTCTC+AGG - chr3_2:88667609-88667628 Msa0435480:intron 45.0%
TCTCGTCAATGCTCATCCTT+CGG - chr3_2:88667646-88667665 Msa0435480:intron 45.0%
TCAAAATCGATGTGGCAGGT+TGG - chr3_2:88667794-88667813 Msa0435480:intron 45.0%
CAACACTTGTGATCTGCAAC+AGG + chr3_2:88667824-88667843 None:intergenic 45.0%
CTGTTGCAGATCACAAGTGT+TGG - chr3_2:88667822-88667841 Msa0435480:CDS 45.0%
TTCAGCTGCAACATCTGATC+CGG + chr3_2:88667906-88667925 None:intergenic 45.0%
AGCAATGGCATCAGCATCTT+TGG - chr3_2:88667934-88667953 Msa0435480:CDS 45.0%
! ACTTTTGCGGACAAGCATAG+AGG - chr3_2:88668019-88668038 Msa0435480:intron 45.0%
! GATATGGGGATGAGCTTTTG+TGG - chr3_2:88668092-88668111 Msa0435480:intron 45.0%
AGGAATCATCACCTGTAGCA+TGG + chr3_2:88668135-88668154 None:intergenic 45.0%
TCCTACCTTCAGTATGTGAC+TGG - chr3_2:88668151-88668170 Msa0435480:intron 45.0%
TTTGGCCAGTCACATACTGA+AGG + chr3_2:88668159-88668178 None:intergenic 45.0%
! CAGTATGTGACTGGCCAAAA+TGG - chr3_2:88668160-88668179 Msa0435480:intron 45.0%
AGCTCTTCATACCTGAGTTC+CGG + chr3_2:88668242-88668261 None:intergenic 45.0%
AAGACCACACATTACAGCCT+CGG + chr3_2:88668656-88668675 None:intergenic 45.0%
!!! GTTCTGCTTTTTGTGGCTGT+TGG + chr3_2:88668691-88668710 None:intergenic 45.0%
!! TTTCATAAAAAGTGCCCCGG+GGG + chr3_2:88668780-88668799 None:intergenic 45.0%
GTCTGGAGGAACACAAACTA+TGG - chr3_2:88668947-88668966 Msa0435480:CDS 45.0%
GTCTGATATGGGTGAGTGAA+TGG - chr3_2:88669046-88669065 Msa0435480:CDS 45.0%
GCTAAGAATGCAGATGCAAC+AGG + chr3_2:88669087-88669106 None:intergenic 45.0%
GCAAAGTCTCGAAGATCTGA+TGG + chr3_2:88669180-88669199 None:intergenic 45.0%
TTCCAGGCTGATTACGTGTT+GGG - chr3_2:88669593-88669612 Msa0435480:CDS 45.0%
TCCCACAATTTGTGCATCAC+AGG - chr3_2:88669663-88669682 Msa0435480:CDS 45.0%
CCCTGTGATGCACAAATTGT+GGG + chr3_2:88669667-88669686 None:intergenic 45.0%
CCCACAATTTGTGCATCACA+GGG - chr3_2:88669664-88669683 Msa0435480:CDS 45.0%
CCACAATTTGTGCATCACAG+GGG - chr3_2:88669665-88669684 Msa0435480:CDS 45.0%
GCAAAAACTGGTTGCAAGGA+TGG - chr3_2:88669707-88669726 Msa0435480:five_prime_UTR 45.0%
AGCTACATTGGGATTCGGAT+CGG + chr3_2:88669753-88669772 None:intergenic 45.0%
CCAGTAGCTACATTGGGATT+CGG + chr3_2:88669758-88669777 None:intergenic 45.0%
AGTGCTCCAGTAGCTACATT+GGG + chr3_2:88669764-88669783 None:intergenic 45.0%
AAGTGCTCCAGTAGCTACAT+TGG + chr3_2:88669765-88669784 None:intergenic 45.0%
ACTCAAAAGAAGTTGCGACG+CGG - chr3_2:88669962-88669981 Msa0435480:five_prime_UTR 45.0%
!!! GTGGTGTTGTGTTTTGTCGG+TGG + chr3_2:88666326-88666345 None:intergenic 50.0%
ATGGGGAGAAGGAGTCGAAA+TGG + chr3_2:88666456-88666475 None:intergenic 50.0%
!! GTGATTCTGGCTCTTGTGGT+CGG - chr3_2:88666891-88666910 Msa0435480:CDS 50.0%
TCGGCAAGATCTCTGGATCA+TGG - chr3_2:88667211-88667230 Msa0435480:intron 50.0%
ACCGAGGCAGTAAAAGCCAT+AGG + chr3_2:88667533-88667552 None:intergenic 50.0%
CACCTGAGAGAATCTTGTGC+TGG + chr3_2:88667614-88667633 None:intergenic 50.0%
CAGCACAAGATTCTCTCAGG+TGG - chr3_2:88667612-88667631 Msa0435480:intron 50.0%
CAAGTGAACGTATCCTGTCC+CGG - chr3_2:88667884-88667903 Msa0435480:CDS 50.0%
TCAGCTGCAACATCTGATCC+GGG + chr3_2:88667905-88667924 None:intergenic 50.0%
AGCTGAAACTGCAGCAGCAA+TGG - chr3_2:88667919-88667938 Msa0435480:CDS 50.0%
GCCAGTCACATACTGAAGGT+AGG + chr3_2:88668155-88668174 None:intergenic 50.0%
CTCAATTTGGAAGCCCAACC+TGG - chr3_2:88668194-88668213 Msa0435480:intron 50.0%
AAGCCCAACCTGGTTCAGTT+GGG - chr3_2:88668204-88668223 Msa0435480:intron 50.0%
TGTCCCAACTGAACCAGGTT+GGG + chr3_2:88668210-88668229 None:intergenic 50.0%
TTGTCCCAACTGAACCAGGT+TGG + chr3_2:88668211-88668230 None:intergenic 50.0%
! CTTGTTGTCCCAACTGAACC+AGG + chr3_2:88668215-88668234 None:intergenic 50.0%
AGTTGGGACAACAAGCTTGC+CGG - chr3_2:88668220-88668239 Msa0435480:intron 50.0%
TTTGTGGCTGTTGGAGAGTC+TGG + chr3_2:88668682-88668701 None:intergenic 50.0%
GAAATGCTAATGAGTGCCCC+CGG - chr3_2:88668761-88668780 Msa0435480:intron 50.0%
AAATGCTAATGAGTGCCCCC+GGG - chr3_2:88668762-88668781 Msa0435480:intron 50.0%
TCGAGACTTTGCCAGATCTC+AGG - chr3_2:88669188-88669207 Msa0435480:intron 50.0%
CTTCCAGGCTGATTACGTGT+TGG - chr3_2:88669592-88669611 Msa0435480:CDS 50.0%
CCCCTGTGATGCACAAATTG+TGG + chr3_2:88669668-88669687 None:intergenic 50.0%
AAACTGGTTGCAAGGATGGG+TGG - chr3_2:88669711-88669730 Msa0435480:five_prime_UTR 50.0%
CCGAATCCCAATGTAGCTAC+TGG - chr3_2:88669755-88669774 Msa0435480:five_prime_UTR 50.0%
! GTAGCTACTGGAGCACTTGT+TGG - chr3_2:88669767-88669786 Msa0435480:five_prime_UTR 50.0%
! GCGTCGCAACTTCTTTTGAG+TGG + chr3_2:88669963-88669982 None:intergenic 50.0%
! ACTAGCCTATCCAGACACCA+CGG + chr3_2:88670082-88670101 None:intergenic 50.0%
GAATAAGCTCAGAGCTGGTG+AGG + chr3_2:88670148-88670167 None:intergenic 50.0%
!! TGACTCATGCTAGCGTCGGT+GGG + chr3_2:88666262-88666281 None:intergenic 55.0%
! TTGACTCATGCTAGCGTCGG+TGG + chr3_2:88666263-88666282 None:intergenic 55.0%
! GCTAGGTTGTTGGTTGGTGC+TGG - chr3_2:88666544-88666563 Msa0435480:three_prime_UTR 55.0%
! GATAAACCCGAACCGGTTCC+CGG - chr3_2:88666960-88666979 Msa0435480:intron 55.0%
ATCAATGGCACCAGGAGGAC+CGG + chr3_2:88666982-88667001 None:intergenic 55.0%
GAGAGGGGATTCGGCTCTTA+AGG - chr3_2:88667436-88667455 Msa0435480:CDS 55.0%
GGGGATTCGGCTCTTAAGGA+TGG - chr3_2:88667440-88667459 Msa0435480:CDS 55.0%
GCCGGGGATCACATGAAGTT+TGG - chr3_2:88667503-88667522 Msa0435480:intron 55.0%
!! TTACTGCCTCGGTGCTATCG+TGG - chr3_2:88667540-88667559 Msa0435480:intron 55.0%
!! TACTGCCTCGGTGCTATCGT+GGG - chr3_2:88667541-88667560 Msa0435480:intron 55.0%
AATTGCCCACGATAGCACCG+AGG + chr3_2:88667549-88667568 None:intergenic 55.0%
TGCAACATCTGATCCGGGAC+AGG + chr3_2:88667900-88667919 None:intergenic 55.0%
! AGCTTTTGTGGGCAGCTACC+TGG - chr3_2:88668104-88668123 Msa0435480:intron 55.0%
!! ACCTGGCTCTACCATGCTAC+AGG - chr3_2:88668121-88668140 Msa0435480:intron 55.0%
ACCTGTAGCATGGTAGAGCC+AGG + chr3_2:88668125-88668144 None:intergenic 55.0%
GAAGCCCAACCTGGTTCAGT+TGG - chr3_2:88668203-88668222 Msa0435480:intron 55.0%
CAACAAGCTTGCCGGAACTC+AGG - chr3_2:88668228-88668247 Msa0435480:intron 55.0%
ACCACACATTACAGCCTCGG+CGG + chr3_2:88668653-88668672 None:intergenic 55.0%
AATGCTAATGAGTGCCCCCG+GGG - chr3_2:88668763-88668782 Msa0435480:intron 55.0%
TGCCCAACACGTAATCAGCC+TGG + chr3_2:88669598-88669617 None:intergenic 55.0%
! GCTACTGGAGCACTTGTTGG+TGG - chr3_2:88669770-88669789 Msa0435480:five_prime_UTR 55.0%
GGATTGAAGGGCCGAAGATG+TGG + chr3_2:88669903-88669922 None:intergenic 55.0%
TGAGTGTGAACCGTGGTGTC+TGG - chr3_2:88670069-88670088 Msa0435480:five_prime_UTR 55.0%
GTGAACCGTGGTGTCTGGAT+AGG - chr3_2:88670074-88670093 Msa0435480:five_prime_UTR 55.0%
!! GACTCATGCTAGCGTCGGTG+GGG + chr3_2:88666261-88666280 None:intergenic 60.0%
TGCGGCGAGAAATGGGGAGA+AGG + chr3_2:88666467-88666486 None:intergenic 60.0%
TCCCCATTTCTCGCCGCAAC+CGG - chr3_2:88666469-88666488 Msa0435480:three_prime_UTR 60.0%
ACCCGGTTGCGGCGAGAAAT+GGG + chr3_2:88666474-88666493 None:intergenic 60.0%
ATTTCTCGCCGCAACCGGGT+CGG - chr3_2:88666474-88666493 Msa0435480:three_prime_UTR 60.0%
GATATGGGTCTGACCCGACC+CGG + chr3_2:88666491-88666510 None:intergenic 60.0%
TCAATGGCACCAGGAGGACC+GGG + chr3_2:88666981-88667000 None:intergenic 60.0%
TCCGCCGAGGCTGTAATGTG+TGG - chr3_2:88668649-88668668 Msa0435480:CDS 60.0%
GTTGCAAGGATGGGTGGCAG+TGG - chr3_2:88669717-88669736 Msa0435480:five_prime_UTR 60.0%
CCCGGTTGCGGCGAGAAATG+GGG + chr3_2:88666473-88666492 None:intergenic 65.0%
CCCCATTTCTCGCCGCAACC+GGG - chr3_2:88666470-88666489 Msa0435480:three_prime_UTR 65.0%
GACCCGGTTGCGGCGAGAAA+TGG + chr3_2:88666475-88666494 None:intergenic 65.0%
TTTCTCGCCGCAACCGGGTC+GGG - chr3_2:88666475-88666494 Msa0435480:three_prime_UTR 65.0%
AGGAGGACCGGGAACCGGTT+CGG + chr3_2:88666970-88666989 None:intergenic 65.0%
GGTCTGACCCGACCCGGTTG+CGG + chr3_2:88666485-88666504 None:intergenic 70.0%
! GGAGGACCGGGAACCGGTTC+GGG + chr3_2:88666969-88666988 None:intergenic 70.0%
! GAACCGGTTCCCGGTCCTCC+TGG - chr3_2:88666969-88666988 Msa0435480:intron 70.0%
GCACCAGGAGGACCGGGAAC+CGG + chr3_2:88666975-88666994 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 88666255 88670281 88666255 ID=Msa0435480;Name=Msa0435480
chr3_2 mRNA 88666255 88670281 88666255 ID=Msa0435480-mRNA-1;Parent=Msa0435480;Name=Msa0435480-mRNA-1;_AED=0.05;_eAED=0.05;_QI=582|1|1|1|1|1|6|350|529
chr3_2 exon 88666255 88666937 88666255 ID=Msa0435480-mRNA-1:exon:26137;Parent=Msa0435480-mRNA-1
chr3_2 exon 88667327 88667493 88667327 ID=Msa0435480-mRNA-1:exon:26136;Parent=Msa0435480-mRNA-1
chr3_2 exon 88667821 88667968 88667821 ID=Msa0435480-mRNA-1:exon:26135;Parent=Msa0435480-mRNA-1
chr3_2 exon 88668287 88668724 88668287 ID=Msa0435480-mRNA-1:exon:26134;Parent=Msa0435480-mRNA-1
chr3_2 exon 88668848 88669131 88668848 ID=Msa0435480-mRNA-1:exon:26133;Parent=Msa0435480-mRNA-1
chr3_2 exon 88669480 88670281 88669480 ID=Msa0435480-mRNA-1:exon:26132;Parent=Msa0435480-mRNA-1
chr3_2 five_prime_UTR 88669700 88670281 88669700 ID=Msa0435480-mRNA-1:five_prime_utr;Parent=Msa0435480-mRNA-1
chr3_2 CDS 88669480 88669699 88669480 ID=Msa0435480-mRNA-1:cds;Parent=Msa0435480-mRNA-1
chr3_2 CDS 88668848 88669131 88668848 ID=Msa0435480-mRNA-1:cds;Parent=Msa0435480-mRNA-1
chr3_2 CDS 88668287 88668724 88668287 ID=Msa0435480-mRNA-1:cds;Parent=Msa0435480-mRNA-1
chr3_2 CDS 88667821 88667968 88667821 ID=Msa0435480-mRNA-1:cds;Parent=Msa0435480-mRNA-1
chr3_2 CDS 88667327 88667493 88667327 ID=Msa0435480-mRNA-1:cds;Parent=Msa0435480-mRNA-1
chr3_2 CDS 88666605 88666937 88666605 ID=Msa0435480-mRNA-1:cds;Parent=Msa0435480-mRNA-1
chr3_2 three_prime_UTR 88666255 88666604 88666255 ID=Msa0435480-mRNA-1:three_prime_utr;Parent=Msa0435480-mRNA-1
Gene Sequence

>Msa0435480

ATGAGAGAAAAATCGAGATCAAAAGGAGGATGTTGTGGTTGGTTTATTGCGTTTGTGATTCTGGCTCTTGTGGTCGGTGCTATTGTTTATGCTGTTAAGAAGAAAATCGATAACTCAAATTCAGATAAACCCGAACCGGTTCCCGGTCCTCCTGGTGCCATTGATCAAAAATATGCTTCTGCTCTCAAAACTGCAATGCAATTCTTCGACGTGCAAAAATCTGGCAAGTTAGAGAACAACAAAATAAGTTGGAGAGGGGATTCGGCTCTTAAGGATGGAAAGCAAGCAGATTTAGATCTAACAAAAGGAATGTATGATGCCGGGGATCACATGAAGTTTGGTTTTCCTATGGCTTTTACTGCCTCGGTGCTATCGTGGGCAATTCTAGAATATGGAGATCAAATGGATGCTGTTGGCCAATTGGAACCAGCACAAGATTCTCTCAGGTGGATCACTGATTTTCTCGTCAATGCTCATCCTTCGGAGAATGTTCTGTATATTCAGGTTGGTGATCCTGTTGCAGATCACAAGTGTTGGAATAGACCTGAGTTAATTACTGAGGAACGACCCCTCTTACAAGTGAACGTATCCTGTCCCGGATCAGATGTTGCAGCTGAAACTGCAGCAGCAATGGCATCAGCATCTTTGGTCTTCAAAAAGTCAGATGCTACATATTCAAGCACTCTCCTCAAGCATGCAAAACAGTTATTTACTTTTGCGGACAAGCATAGAGGAATTTACAGTGAGAATATACCTGAAGTTGCGACATATTATAACTCAACTGGATATGGGGATGAGCTTTTGTGGGCAGCTACCTGGCTCTACCATGCTACAGGTGATGATTCCTACCTTCAGTATGTGACTGGCCAAAATGGAGAAGACTATGCTCAATTTGGAAGCCCAACCTGGTTCAGTTGGGACAACAAGCTTGCCGGAACTCAGGTTTTGTTATCTAGAGTAAGCTTCTTCAAGGCAAAGGGCCTTTCAAGTTCATATGGTTCCGGCCTCCAAAATTATAGAAAATCCGCCGAGGCTGTAATGTGTGGTCTTCTTCCAGACTCTCCAACAGCCACAAAAAGCAGAACTGATAATGGTCTGATATGGGTGAGTGAATGGAACGCTTTGCAGCATCCTGTTGCATCTGCATTCTTAGCTTCTGTTTACAGTGACTATATGCTTACAACGCAGACTCCCAATATAAAATGTGATTCAGATTCCTTCAAACCATCAGATCTTCGAGACTTTGCCAGATCTCAGGCTGATTACGTGTTGGGCAAGAATCCTCAGCATATGAGTTTTCTGGTGGGATATGGAAAGAATTTCCCACAATTTGTGCATCACAGGGGAGCTTCAATTCCTGCTAATGCAAAAACTGGTTGCAAGGATGGGTGGCAGTGGCTTGACTCATCCGATCCGAATCCCAATGTAGCTACTGGAGCACTTGTTGGTGGACCTTTCTTAAATGAGACTTACATTGATTCTAGGAACAATTCTATGCAAGGAGAACCAAGCACATATAACAGTGCTGTCATAGTTGGTCTCTTATCAAGTTTAGTCACCACATCTTCGGCCCTTCAATCCTTCTCCTAA
Protein sequence

>Msa0435480

MREKSRSKGGCCGWFIAFVILALVVGAIVYAVKKKIDNSNSDKPEPVPGPPGAIDQKYASALKTAMQFFDVQKSGKLENNKISWRGDSALKDGKQADLDLTKGMYDAGDHMKFGFPMAFTASVLSWAILEYGDQMDAVGQLEPAQDSLRWITDFLVNAHPSENVLYIQVGDPVADHKCWNRPELITEERPLLQVNVSCPGSDVAAETAAAMASASLVFKKSDATYSSTLLKHAKQLFTFADKHRGIYSENIPEVATYYNSTGYGDELLWAATWLYHATGDDSYLQYVTGQNGEDYAQFGSPTWFSWDNKLAGTQVLLSRVSFFKAKGLSSSYGSGLQNYRKSAEAVMCGLLPDSPTATKSRTDNGLIWVSEWNALQHPVASAFLASVYSDYMLTTQTPNIKCDSDSFKPSDLRDFARSQADYVLGKNPQHMSFLVGYGKNFPQFVHHRGASIPANAKTGCKDGWQWLDSSDPNPNVATGALVGGPFLNETYIDSRNNSMQGEPSTYNSAVIVGLLSSLVTTSSALQSFS*