Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385780 | XP_013462254.1 | 90.948 | 696 | 51 | 5 | 1 | 684 | 1 | 696 | 0.0 | 1220 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385780 | sp|A0A178VBJ0|APSR1_ARATH | 26.471 | 442 | 280 | 8 | 262 | 672 | 199 | 626 | 2.51e-30 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385780 | A0A072V2N3 | 90.948 | 696 | 51 | 5 | 1 | 684 | 1 | 696 | 0.0 | 1220 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036870 | Msa0385780 | 0.802580 | 5.243385e-49 | -8.615850e-47 |
| Msa0385780 | Msa0776600 | 0.943000 | 2.641762e-102 | -8.615850e-47 |
| Msa0385780 | Msa1433810 | 0.804259 | 2.353316e-49 | -8.615850e-47 |
| Msa0385780 | Msa1451700 | 0.931554 | 3.183274e-94 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385780 | MtrunA17_Chr3g0143731 | 90.948 | 696 | 51 | 5 | 1 | 684 | 1 | 696 | 0.0 | 1220 |
| Msa0385780 | MtrunA17_Chr3g0124841 | 31.126 | 453 | 255 | 6 | 267 | 670 | 458 | 902 | 1.19e-51 | 192 |
| Msa0385780 | MtrunA17_Chr1g0211271 | 26.209 | 641 | 418 | 16 | 1 | 601 | 1 | 626 | 2.68e-40 | 157 |
| Msa0385780 | MtrunA17_Chr5g0440551 | 23.935 | 798 | 414 | 25 | 1 | 673 | 1 | 730 | 2.77e-38 | 152 |
| Msa0385780 | MtrunA17_Chr4g0072011 | 26.810 | 511 | 284 | 16 | 192 | 670 | 272 | 724 | 7.47e-35 | 141 |
| Msa0385780 | MtrunA17_Chr3g0130761 | 28.539 | 438 | 269 | 11 | 267 | 667 | 344 | 774 | 1.23e-34 | 140 |
| Msa0385780 | MtrunA17_Chr2g0298171 | 27.517 | 447 | 264 | 14 | 265 | 681 | 534 | 950 | 9.52e-34 | 138 |
| Msa0385780 | MtrunA17_Chr2g0331821 | 25.114 | 438 | 277 | 9 | 276 | 674 | 333 | 758 | 2.16e-29 | 124 |
| Msa0385780 | MtrunA17_Chr5g0405741 | 26.879 | 346 | 232 | 6 | 263 | 595 | 204 | 541 | 1.24e-28 | 121 |
| Msa0385780 | MtrunA17_Chr8g0335341 | 24.041 | 678 | 389 | 15 | 1 | 605 | 1 | 625 | 5.52e-28 | 120 |
| Msa0385780 | MtrunA17_Chr3g0118401 | 26.282 | 468 | 248 | 17 | 263 | 673 | 327 | 754 | 9.87e-27 | 116 |
| Msa0385780 | MtrunA17_Chr7g0250681 | 25.561 | 446 | 270 | 11 | 257 | 658 | 399 | 826 | 7.23e-25 | 110 |
| Msa0385780 | MtrunA17_Chr4g0004471 | 28.679 | 265 | 180 | 4 | 347 | 607 | 204 | 463 | 8.20e-22 | 100 |
| Msa0385780 | MtrunA17_Chr8g0382551 | 26.383 | 470 | 245 | 16 | 1 | 402 | 1 | 437 | 1.24e-21 | 98.2 |
| Msa0385780 | MtrunA17_Chr2g0303521 | 26.038 | 265 | 170 | 7 | 350 | 597 | 296 | 551 | 1.57e-17 | 86.7 |
| Msa0385780 | MtrunA17_Chr5g0448571 | 39.130 | 115 | 39 | 4 | 1 | 94 | 1 | 105 | 9.02e-15 | 78.2 |
| Msa0385780 | MtrunA17_Chr8g0382541 | 28.235 | 170 | 106 | 4 | 428 | 590 | 1 | 161 | 1.37e-14 | 73.9 |
| Msa0385780 | MtrunA17_Chr1g0208081 | 36.667 | 90 | 51 | 1 | 351 | 434 | 8 | 97 | 2.27e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385780 | AT1G20530.1 | 35.389 | 681 | 354 | 16 | 1 | 667 | 1 | 609 | 3.14e-104 | 330 |
| Msa0385780 | AT2G17110.1 | 32.119 | 741 | 417 | 19 | 1 | 674 | 1 | 722 | 7.11e-93 | 304 |
| Msa0385780 | AT4G35240.4 | 31.918 | 636 | 330 | 16 | 72 | 674 | 269 | 834 | 1.73e-76 | 262 |
| Msa0385780 | AT4G35240.4 | 53.571 | 56 | 25 | 1 | 1 | 56 | 1 | 55 | 5.20e-13 | 73.2 |
| Msa0385780 | AT4G35240.3 | 31.918 | 636 | 330 | 16 | 72 | 674 | 269 | 834 | 1.73e-76 | 262 |
| Msa0385780 | AT4G35240.3 | 53.571 | 56 | 25 | 1 | 1 | 56 | 1 | 55 | 5.20e-13 | 73.2 |
| Msa0385780 | AT4G35240.2 | 31.918 | 636 | 330 | 16 | 72 | 674 | 269 | 834 | 2.71e-76 | 262 |
| Msa0385780 | AT4G35240.2 | 53.571 | 56 | 25 | 1 | 1 | 56 | 1 | 55 | 5.68e-13 | 72.8 |
| Msa0385780 | AT4G35240.1 | 31.918 | 636 | 330 | 16 | 72 | 674 | 269 | 834 | 2.71e-76 | 262 |
| Msa0385780 | AT4G35240.1 | 53.571 | 56 | 25 | 1 | 1 | 56 | 1 | 55 | 5.68e-13 | 72.8 |
| Msa0385780 | AT1G77500.1 | 33.255 | 424 | 258 | 7 | 263 | 665 | 449 | 868 | 9.70e-59 | 213 |
| Msa0385780 | AT1G21740.1 | 31.330 | 466 | 258 | 8 | 259 | 673 | 493 | 947 | 1.20e-56 | 208 |
| Msa0385780 | AT4G39790.1 | 26.367 | 622 | 381 | 20 | 1 | 573 | 9 | 602 | 6.46e-39 | 153 |
| Msa0385780 | AT1G02110.1 | 25.000 | 764 | 411 | 24 | 1 | 671 | 1 | 695 | 1.66e-35 | 143 |
| Msa0385780 | AT4G30130.3 | 24.493 | 641 | 395 | 16 | 1 | 566 | 1 | 627 | 8.07e-33 | 135 |
| Msa0385780 | AT4G30130.1 | 24.493 | 641 | 395 | 16 | 1 | 566 | 1 | 627 | 8.07e-33 | 135 |
| Msa0385780 | AT3G51290.3 | 26.471 | 442 | 280 | 8 | 262 | 672 | 199 | 626 | 2.55e-31 | 130 |
| Msa0385780 | AT3G51290.2 | 26.185 | 443 | 280 | 9 | 262 | 672 | 199 | 626 | 5.60e-31 | 130 |
| Msa0385780 | AT2G27090.2 | 26.420 | 352 | 216 | 8 | 263 | 574 | 307 | 655 | 7.02e-30 | 126 |
| Msa0385780 | AT2G27090.1 | 26.420 | 352 | 216 | 8 | 263 | 574 | 307 | 655 | 7.02e-30 | 126 |
| Msa0385780 | AT5G54480.1 | 32.046 | 259 | 156 | 5 | 348 | 599 | 397 | 642 | 9.02e-29 | 122 |
| Msa0385780 | AT1G52320.2 | 25.236 | 424 | 278 | 8 | 276 | 668 | 362 | 777 | 1.69e-27 | 119 |
| Msa0385780 | AT1G52320.5 | 25.236 | 424 | 278 | 8 | 276 | 668 | 362 | 777 | 1.69e-27 | 119 |
| Msa0385780 | AT1G52320.1 | 25.236 | 424 | 278 | 8 | 276 | 668 | 339 | 754 | 1.80e-27 | 119 |
| Msa0385780 | AT1G52320.3 | 25.472 | 424 | 277 | 8 | 276 | 668 | 36 | 451 | 3.94e-27 | 115 |
| Msa0385780 | AT1G52320.4 | 25.472 | 424 | 277 | 8 | 276 | 668 | 36 | 451 | 3.94e-27 | 115 |
| Msa0385780 | AT3G51290.1 | 26.018 | 442 | 276 | 9 | 262 | 672 | 199 | 620 | 6.42e-27 | 116 |
| Msa0385780 | AT2G19090.1 | 31.301 | 246 | 150 | 5 | 351 | 580 | 482 | 724 | 8.42e-25 | 110 |
| Msa0385780 | AT3G60320.1 | 25.721 | 451 | 266 | 12 | 257 | 658 | 349 | 779 | 9.90e-24 | 107 |
| Msa0385780 | AT5G25590.1 | 23.502 | 434 | 283 | 8 | 271 | 667 | 337 | 758 | 2.42e-21 | 99.8 |
| Msa0385780 | AT4G30130.4 | 24.335 | 489 | 298 | 12 | 1 | 428 | 1 | 478 | 1.80e-18 | 89.7 |
| Msa0385780 | AT4G30130.2 | 24.335 | 489 | 298 | 12 | 1 | 428 | 1 | 478 | 1.80e-18 | 89.7 |
| Msa0385780 | AT2G34670.2 | 24.188 | 277 | 190 | 5 | 350 | 616 | 336 | 602 | 7.57e-16 | 82.0 |
| Msa0385780 | AT2G34670.1 | 25.229 | 218 | 146 | 4 | 350 | 560 | 336 | 543 | 1.27e-11 | 68.2 |
Find 136 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTCCGGGAATGTGATTT+TGG | 0.182499 | 3_1:-89470885 | Msa0385780:CDS |
| TGAAACAGTGAAAGAAATTC+AGG | 0.247480 | 3_1:-89470927 | Msa0385780:CDS |
| ATTTAACTCGGAAAAGTTTC+CGG | 0.282554 | 3_1:+89471264 | None:intergenic |
| GTTATGTTTAGATGGGAAAA+TGG | 0.295262 | 3_1:+89471748 | None:intergenic |
| AACCCATCGTTATGTTTAGA+TGG | 0.301194 | 3_1:+89471740 | None:intergenic |
| TTTGAAAGAGCATCGGATTC+CGG | 0.302014 | 3_1:-89470899 | Msa0385780:CDS |
| TTTCAACAATTTCCTGATAC+TGG | 0.313090 | 3_1:+89469167 | None:intergenic |
| GGAACTTAAGCTTCTTAGAT+TGG | 0.320170 | 3_1:-89469054 | Msa0385780:CDS |
| AATGTAATTGAAGCTGTAAA+TGG | 0.333095 | 3_1:-89468866 | Msa0385780:CDS |
| GTTGAGACGTATAAATAAAA+AGG | 0.333127 | 3_1:-89469832 | Msa0385780:CDS |
| TGAGAGTGAGGGTTTGGTTT+CGG | 0.334144 | 3_1:+89471534 | None:intergenic |
| ATCTTACTAGCCAATCATTC+AGG | 0.336155 | 3_1:+89469002 | None:intergenic |
| AGCTTTGGCCGCAGATTAAT+AGG | 0.341152 | 3_1:-89469686 | Msa0385780:CDS |
| ATGTTACAAACGCCAGTATC+AGG | 0.344767 | 3_1:-89469179 | Msa0385780:CDS |
| GTCATAAAAGTCACATTATC+AGG | 0.369634 | 3_1:+89471340 | None:intergenic |
| CGGAAGAATCTTCAAATTGT+TGG | 0.372285 | 3_1:+89471557 | None:intergenic |
| AAATGAAGAAGGGAATAATA+AGG | 0.376445 | 3_1:-89471044 | Msa0385780:CDS |
| TTGAAAGAGCATCGGATTCC+GGG | 0.378220 | 3_1:-89470898 | Msa0385780:CDS |
| GGTTCCAATTGCAAAAGAAC+TGG | 0.390507 | 3_1:-89468690 | Msa0385780:CDS |
| GGAGCAAAAGTTGGACAAAA+TGG | 0.395596 | 3_1:-89468735 | Msa0385780:CDS |
| GGAGAGTAGGAATCGTAAAT+AGG | 0.403861 | 3_1:+89471307 | None:intergenic |
| TGGTATGAAGTGGTGTTTAT+TGG | 0.407417 | 3_1:+89471859 | None:intergenic |
| CTCCTCCGAGCAATTCTGCT+TGG | 0.412105 | 3_1:-89471228 | Msa0385780:CDS |
| TCCTCCGAGCAATTCTGCTT+GGG | 0.412629 | 3_1:-89471227 | Msa0385780:CDS |
| TGAGGAGACATCTAAAGCTT+TGG | 0.413492 | 3_1:+89469144 | None:intergenic |
| CTCAAGACTTGACCGGCTTC+CGG | 0.416738 | 3_1:-89471710 | Msa0385780:CDS |
| CATTTCCAAAATCACATTCC+CGG | 0.416886 | 3_1:+89470880 | None:intergenic |
| CTTACTGATGAAAGGTTTCT+CGG | 0.419023 | 3_1:-89469223 | Msa0385780:intron |
| CAGAATGATTCGACTCCCTT+TGG | 0.419176 | 3_1:-89468953 | Msa0385780:CDS |
| CAAATTGTTGGAAGAAATGA+AGG | 0.422702 | 3_1:+89471569 | None:intergenic |
| CGTCAATTTACTAATAGAGT+TGG | 0.429101 | 3_1:+89469716 | None:intergenic |
| TGGATATCTTGTCAACTACT+TGG | 0.437688 | 3_1:+89469736 | None:intergenic |
| ATGTAATTGAAGCTGTAAAT+GGG | 0.444055 | 3_1:-89468865 | Msa0385780:CDS |
| ATTCCACACATTTAACCATC+AGG | 0.454962 | 3_1:+89470680 | None:intergenic |
| CAACTCTATTAGTAAATTGA+CGG | 0.477659 | 3_1:-89469715 | Msa0385780:CDS |
| GCAAAAGAACTGGGAGAAGT+AGG | 0.477697 | 3_1:-89468680 | Msa0385780:CDS |
| TCTTACTAGCCAATCATTCA+GGG | 0.478742 | 3_1:+89469003 | None:intergenic |
| TTGCTCGGAGGAGGCGGTGA+CGG | 0.480688 | 3_1:+89471238 | None:intergenic |
| AATTGACGGAAGAAGAGCTT+TGG | 0.485231 | 3_1:-89469701 | Msa0385780:CDS |
| GCAGAATTGCTCGGAGGAGG+CGG | 0.500113 | 3_1:+89471232 | None:intergenic |
| CAAAAGAACTGGGAGAAGTA+GGG | 0.500472 | 3_1:-89468679 | Msa0385780:CDS |
| GCAAGGCTTTCTGTTGAATG+AGG | 0.505492 | 3_1:+89469126 | None:intergenic |
| ATCAGGAACTGAGGATAAAA+CGG | 0.506925 | 3_1:+89471357 | None:intergenic |
| ATGTGAAAGCCCTGAATGAT+TGG | 0.508812 | 3_1:-89469012 | Msa0385780:CDS |
| TCCTTCGTCGAATCCCCTGA+TGG | 0.509395 | 3_1:-89470695 | Msa0385780:CDS |
| GGACAGGCAGGAGCAAAAGT+TGG | 0.512631 | 3_1:-89468744 | Msa0385780:CDS |
| CTCCCTCGCCGATGCACACG+TGG | 0.512656 | 3_1:-89471629 | Msa0385780:CDS |
| ACCCATCGTTATGTTTAGAT+GGG | 0.515465 | 3_1:+89471741 | None:intergenic |
| CAAGCAGAATTGCTCGGAGG+AGG | 0.516049 | 3_1:+89471229 | None:intergenic |
| CTTTGAGTAAACTATGTATG+TGG | 0.523067 | 3_1:-89470582 | Msa0385780:CDS |
| CCGGTCGTGTTCGACGGAGG+CGG | 0.524060 | 3_1:+89471283 | None:intergenic |
| GATTCTATTAGCTTACAGTC+TGG | 0.524395 | 3_1:-89468626 | Msa0385780:CDS |
| GTCGTGTTCGACGGAGGCGG+AGG | 0.528125 | 3_1:+89471286 | None:intergenic |
| CCGCCTCCGTCGAACACGAC+CGG | 0.529880 | 3_1:-89471283 | Msa0385780:CDS |
| TCAAATCCGAGTTACAGAAA+TGG | 0.530303 | 3_1:-89469075 | Msa0385780:CDS |
| CGACGGAGGCGGAGGAGAGT+AGG | 0.531019 | 3_1:+89471294 | None:intergenic |
| CGATGCACACGTGGCACACA+TGG | 0.533761 | 3_1:-89471620 | Msa0385780:CDS |
| TAAGTTCCATTTCTGTAACT+CGG | 0.534443 | 3_1:+89469069 | None:intergenic |
| TTTCAAATGAATTGAAAAGG+AGG | 0.534596 | 3_1:+89471815 | None:intergenic |
| TTGCTACATTCTTCTAACTC+CGG | 0.535557 | 3_1:+89470977 | None:intergenic |
| GAAACAGATCTTTGTTGCCA+TGG | 0.539505 | 3_1:-89468600 | Msa0385780:CDS |
| TCCCATCTAAACATAACGAT+GGG | 0.543439 | 3_1:-89471742 | Msa0385780:exon |
| ATGAAAGGTTTCTCGGAATG+TGG | 0.545233 | 3_1:-89469216 | Msa0385780:intron |
| CGGCGAGGGAGTAGCTTTGA+CGG | 0.546200 | 3_1:+89471641 | None:intergenic |
| AAAGAAAAGGAAAAGGATAA+CGG | 0.551464 | 3_1:-89471112 | Msa0385780:CDS |
| TGTTTGTGCTCCTACACAAA+TGG | 0.551891 | 3_1:-89468919 | Msa0385780:CDS |
| ATGGAATCCCTCAGAACACT+TGG | 0.552322 | 3_1:-89471601 | Msa0385780:CDS |
| ACAATGACACGGCCGGAAGC+CGG | 0.553121 | 3_1:+89471698 | None:intergenic |
| AAGTTTCCGGTCGTGTTCGA+CGG | 0.553782 | 3_1:+89471277 | None:intergenic |
| TTGGAAGAAATGAAGGAGAG+TGG | 0.556169 | 3_1:+89471576 | None:intergenic |
| TTCATATAAACTAGCAGTAG+TGG | 0.556928 | 3_1:+89468565 | None:intergenic |
| AATCATTCAGGGCTTTCACA+TGG | 0.557484 | 3_1:+89469014 | None:intergenic |
| AACACAGGTGGTGCACCAAA+GGG | 0.559781 | 3_1:+89468938 | None:intergenic |
| CGGTGACGGCGGATTTAACT+CGG | 0.561880 | 3_1:+89471252 | None:intergenic |
| GCAACGCCTCAAGACTTGAC+CGG | 0.564219 | 3_1:-89471717 | Msa0385780:CDS |
| AGTGTGACAGAAAATGAAGA+AGG | 0.568169 | 3_1:-89471055 | Msa0385780:CDS |
| GGTTCTGTTTGAAAGAGCAT+CGG | 0.570789 | 3_1:-89470906 | Msa0385780:CDS |
| CGGAAGCCGGTCAAGTCTTG+AGG | 0.571200 | 3_1:+89471711 | None:intergenic |
| CGTTACAGTCACGGTGGGGA+CGG | 0.572758 | 3_1:-89471163 | Msa0385780:CDS |
| GCATCAATATTAGCATTGCA+AGG | 0.572965 | 3_1:+89469109 | None:intergenic |
| TGGAAGAAATGAAGGAGAGT+GGG | 0.574118 | 3_1:+89471577 | None:intergenic |
| TTCCCATCTAAACATAACGA+TGG | 0.574582 | 3_1:-89471743 | Msa0385780:exon |
| GAAGGCTAGAGAGAGAAAGA+TGG | 0.579930 | 3_1:-89468711 | Msa0385780:CDS |
| CGTACTTTGAATTTCTCGTA+CGG | 0.580664 | 3_1:+89471184 | None:intergenic |
| CGATGAATTTGCAACGGTCA+CGG | 0.581048 | 3_1:+89471674 | None:intergenic |
| GCTTCAGAAGAATTCAACAT+TGG | 0.581654 | 3_1:-89468798 | Msa0385780:CDS |
| AATTCCCAAGCAGAATTGCT+CGG | 0.583332 | 3_1:+89471223 | None:intergenic |
| AAGTACGTTACAGTCACGGT+GGG | 0.586677 | 3_1:-89471168 | Msa0385780:CDS |
| GAGTGGGGCCAAGTGTTCTG+AGG | 0.588327 | 3_1:+89471593 | None:intergenic |
| AAACACAGGTGGTGCACCAA+AGG | 0.589556 | 3_1:+89468937 | None:intergenic |
| GTGTGACAGAAAATGAAGAA+GGG | 0.591937 | 3_1:-89471054 | Msa0385780:CDS |
| TTACACTGACACCAACGTAA+CGG | 0.593029 | 3_1:-89471140 | Msa0385780:CDS |
| CAATCCGCTTTGCGTCCACA+TGG | 0.593447 | 3_1:+89470655 | None:intergenic |
| TCAAGGAGTTTACAAAGACA+AGG | 0.594008 | 3_1:-89470632 | Msa0385780:CDS |
| TCCACACATTTAACCATCAG+GGG | 0.594151 | 3_1:+89470682 | None:intergenic |
| TGCCACGTGTGCATCGGCGA+GGG | 0.594705 | 3_1:+89471627 | None:intergenic |
| CATGTGTGCCACGTGTGCAT+CGG | 0.595077 | 3_1:+89471621 | None:intergenic |
| CTCGGAGGAGGCGGTGACGG+CGG | 0.596358 | 3_1:+89471241 | None:intergenic |
| TTCCACACATTTAACCATCA+GGG | 0.598267 | 3_1:+89470681 | None:intergenic |
| TTCAAAGTACGTTACAGTCA+CGG | 0.598956 | 3_1:-89471172 | Msa0385780:CDS |
| TCACGGCACAATGACACGGC+CGG | 0.601932 | 3_1:+89471691 | None:intergenic |
| GTTCCAATTGCAAAAGAACT+GGG | 0.602146 | 3_1:-89468689 | Msa0385780:CDS |
| TTTGAGTAAACTATGTATGT+GGG | 0.602963 | 3_1:-89470581 | Msa0385780:CDS |
| GGAAGGGTTGTGGTATGAAG+TGG | 0.603362 | 3_1:+89471849 | None:intergenic |
| TTTCCGGTCGTGTTCGACGG+AGG | 0.608571 | 3_1:+89471280 | None:intergenic |
| CAAGGAGTTTACAAAGACAA+GGG | 0.609823 | 3_1:-89470631 | Msa0385780:CDS |
| GAAGCTGTATCATGAAGTCA+AGG | 0.612721 | 3_1:-89470554 | Msa0385780:intron |
| AAAGTTGGACAAAATGGTGA+AGG | 0.613385 | 3_1:-89468729 | Msa0385780:CDS |
| TCCCCTGATGGTTAAATGTG+TGG | 0.614115 | 3_1:-89470683 | Msa0385780:CDS |
| AGTGGGGCCAAGTGTTCTGA+GGG | 0.618801 | 3_1:+89471594 | None:intergenic |
| ACGGTCACGGCACAATGACA+CGG | 0.619706 | 3_1:+89471687 | None:intergenic |
| AGGATAAAACGGTGTCGTGG+TGG | 0.620598 | 3_1:+89471368 | None:intergenic |
| ACCATCAGGGGATTCGACGA+AGG | 0.623509 | 3_1:+89470694 | None:intergenic |
| GGTTCTGATTCAGAATGCAG+AGG | 0.623936 | 3_1:+89471451 | None:intergenic |
| GAGTGAGGGTTTGGTTTCGG+CGG | 0.628949 | 3_1:+89471537 | None:intergenic |
| GTTCTGATTCAGAATGCAGA+GGG | 0.631693 | 3_1:+89471452 | None:intergenic |
| AGTGGCACTGAACTTCTCCA+TGG | 0.633761 | 3_1:+89468583 | None:intergenic |
| GGACGCAAAGCGGATTGTCA+AGG | 0.634785 | 3_1:-89470649 | Msa0385780:CDS |
| GAAGAATTCAACATTGGACA+AGG | 0.637945 | 3_1:-89468792 | Msa0385780:CDS |
| CTGAGGATAAAACGGTGTCG+TGG | 0.638029 | 3_1:+89471365 | None:intergenic |
| GCATTCTGAATCAGAACCAG+AGG | 0.644566 | 3_1:-89471446 | Msa0385780:CDS |
| AAAAGAACTGGGAGAAGTAG+GGG | 0.650526 | 3_1:-89468678 | Msa0385780:CDS |
| ATTCGTCGATGAATTTGCAA+CGG | 0.650583 | 3_1:+89471668 | None:intergenic |
| GTGCCACGTGTGCATCGGCG+AGG | 0.651030 | 3_1:+89471626 | None:intergenic |
| AGAATAAACCTATTAATCTG+CGG | 0.652704 | 3_1:+89469678 | None:intergenic |
| ATCGTAAATAGGTTTGACGT+AGG | 0.656289 | 3_1:+89471318 | None:intergenic |
| AGTCACATTATCAGGAACTG+AGG | 0.657704 | 3_1:+89471348 | None:intergenic |
| ATCACCATGTGGACGCAAAG+CGG | 0.660013 | 3_1:-89470659 | Msa0385780:CDS |
| GGAAGAAATGAAGGAGAGTG+GGG | 0.663765 | 3_1:+89471578 | None:intergenic |
| TTGTGTAGGAGCACAAACAC+AGG | 0.670329 | 3_1:+89468923 | None:intergenic |
| AAGGAGTTTACAAAGACAAG+GGG | 0.677263 | 3_1:-89470630 | Msa0385780:CDS |
| AGTACGTTACAGTCACGGTG+GGG | 0.702538 | 3_1:-89471167 | Msa0385780:CDS |
| AAAGTACGTTACAGTCACGG+TGG | 0.707803 | 3_1:-89471169 | Msa0385780:CDS |
| TGTAGGAGCACAAACACAGG+TGG | 0.724501 | 3_1:+89468926 | None:intergenic |
| TCCCAAGCAGAATTGCTCGG+AGG | 0.746950 | 3_1:+89471226 | None:intergenic |
| AAATGTGTGGAATCACCATG+TGG | 0.781613 | 3_1:-89470670 | Msa0385780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAAATTTGATATATTTAT+AGG | - | chr3_1:89469900-89469919 | Msa0385780:intron | 10.0% |
| !! | CAAAATTTGATATATTTATA+GGG | - | chr3_1:89469901-89469920 | Msa0385780:intron | 10.0% |
| !!! | TAATATTAACTTTATTTTAG+CGG | - | chr3_1:89470227-89470246 | Msa0385780:intron | 10.0% |
| !!! | GTAAATATTACTTATTTTTT+TGG | - | chr3_1:89471834-89471853 | Msa0385780:five_prime_UTR | 10.0% |
| !!! | AAAGAATTAATTGAGATTTT+TGG | - | chr3_1:89469554-89469573 | Msa0385780:intron | 15.0% |
| !!! | ATTATATTATATGCCTTTTA+TGG | - | chr3_1:89470373-89470392 | Msa0385780:intron | 15.0% |
| !!! | TAAATGTTCATTTTTTTTTC+AGG | - | chr3_1:89470406-89470425 | Msa0385780:intron | 15.0% |
| !! | TGTTAGATTTAAGAAAATAT+AGG | + | chr3_1:89471025-89471044 | None:intergenic | 15.0% |
| !!! | ATTTTTTTGGAAATAATGAA+TGG | - | chr3_1:89471847-89471866 | Msa0385780:five_prime_UTR | 15.0% |
| !!! | TATTGGTCAATTTTATCATA+GGG | + | chr3_1:89468431-89468450 | None:intergenic | 20.0% |
| !!! | TTATTGGTCAATTTTATCAT+AGG | + | chr3_1:89468432-89468451 | None:intergenic | 20.0% |
| !!! | TGTTTTCAAATGAATTGAAA+AGG | + | chr3_1:89468495-89468514 | None:intergenic | 20.0% |
| !!! | AATTTTGAAGAAAAAGTTAC+CGG | - | chr3_1:89469308-89469327 | Msa0385780:intron | 20.0% |
| !! | TTATTTAACTCTGTATTAGA+AGG | + | chr3_1:89469817-89469836 | None:intergenic | 20.0% |
| !! | ATTAAGACACTTTATTCTAA+GGG | + | chr3_1:89469944-89469963 | None:intergenic | 20.0% |
| !! | AATTAAGACACTTTATTCTA+AGG | + | chr3_1:89469945-89469964 | None:intergenic | 20.0% |
| !! | TAGGTTCAAATAATTAAACA+TGG | + | chr3_1:89470686-89470705 | None:intergenic | 20.0% |
| !! | TTCAATCATTTCATAATAAG+TGG | + | chr3_1:89470775-89470794 | None:intergenic | 20.0% |
| !! | AACCAAAAAATGATTGAAAA+TGG | - | chr3_1:89470920-89470939 | Msa0385780:CDS | 20.0% |
| !! | ATATAAAGAAATAGTCTCAT+AGG | + | chr3_1:89470950-89470969 | None:intergenic | 20.0% |
| !!! | AGAGAAAAAAGTGAAAATTT+TGG | - | chr3_1:89471539-89471558 | Msa0385780:CDS | 20.0% |
| !! | ATTGGTCAATTTTATCATAG+GGG | + | chr3_1:89468430-89468449 | None:intergenic | 25.0% |
| ! | TTTCAAATGAATTGAAAAGG+AGG | + | chr3_1:89468492-89468511 | None:intergenic | 25.0% |
| ! | AAAGAAAAGGAAAAGGATAA+CGG | - | chr3_1:89469192-89469211 | Msa0385780:CDS | 25.0% |
| ! | AAATGAAGAAGGGAATAATA+AGG | - | chr3_1:89469260-89469279 | Msa0385780:intron | 25.0% |
| !! | GATTGAGTTCAATTTTTGAA+TGG | + | chr3_1:89469473-89469492 | None:intergenic | 25.0% |
| ! | TTTGAGTAAACTATGTATGT+GGG | - | chr3_1:89469723-89469742 | Msa0385780:CDS | 25.0% |
| !! | TTTTTCATGTGACTGTTATA+TGG | + | chr3_1:89470006-89470025 | None:intergenic | 25.0% |
| !!! | TAGATATCTAGGTTTTGTTT+GGG | - | chr3_1:89470162-89470181 | Msa0385780:intron | 25.0% |
| ! | GTTGAGACGTATAAATAAAA+AGG | - | chr3_1:89470472-89470491 | Msa0385780:intron | 25.0% |
| !! | AATACTGATGAAAGCTTTTA+CGG | + | chr3_1:89470522-89470541 | None:intergenic | 25.0% |
| ! | CAACTCTATTAGTAAATTGA+CGG | - | chr3_1:89470589-89470608 | Msa0385780:CDS | 25.0% |
| ! | AGAATAAACCTATTAATCTG+CGG | + | chr3_1:89470629-89470648 | None:intergenic | 25.0% |
| !!! | GTCCATTTTCAATCATTTTT+TGG | + | chr3_1:89470925-89470944 | None:intergenic | 25.0% |
| ! | AATGTAATTGAAGCTGTAAA+TGG | - | chr3_1:89471438-89471457 | Msa0385780:CDS | 25.0% |
| ! | ATGTAATTGAAGCTGTAAAT+GGG | - | chr3_1:89471439-89471458 | Msa0385780:CDS | 25.0% |
| !! | AAAAAGTGAAAATTTTGGAC+AGG | - | chr3_1:89471544-89471563 | Msa0385780:CDS | 25.0% |
| !! | ATTAAGCAAGATCATGTTTT+AGG | - | chr3_1:89471777-89471796 | Msa0385780:five_prime_UTR | 25.0% |
| !! | GTAAAACTAGTGATTTTTGT+TGG | + | chr3_1:89471808-89471827 | None:intergenic | 25.0% |
| ! | TTGGTCAATTTTATCATAGG+GGG | + | chr3_1:89468429-89468448 | None:intergenic | 30.0% |
| ! | GAAAAGGAGGAATTTTCATT+GGG | + | chr3_1:89468479-89468498 | None:intergenic | 30.0% |
| ! | TGAAAAGGAGGAATTTTCAT+TGG | + | chr3_1:89468480-89468499 | None:intergenic | 30.0% |
| GTTATGTTTAGATGGGAAAA+TGG | + | chr3_1:89468559-89468578 | None:intergenic | 30.0% | |
| CAAATTGTTGGAAGAAATGA+AGG | + | chr3_1:89468738-89468757 | None:intergenic | 30.0% | |
| GTCATAAAAGTCACATTATC+AGG | + | chr3_1:89468967-89468986 | None:intergenic | 30.0% | |
| ATTTAACTCGGAAAAGTTTC+CGG | + | chr3_1:89469043-89469062 | None:intergenic | 30.0% | |
| GGATGAAAAAGAAAAGGAAA+AGG | - | chr3_1:89469185-89469204 | Msa0385780:CDS | 30.0% | |
| TGTAGCAAAAAAGTAGAATC+TGG | - | chr3_1:89469342-89469361 | Msa0385780:intron | 30.0% | |
| GTAGCAAAAAAGTAGAATCT+GGG | - | chr3_1:89469343-89469362 | Msa0385780:intron | 30.0% | |
| AAAAAAGTAGAATCTGGGAA+AGG | - | chr3_1:89469348-89469367 | Msa0385780:intron | 30.0% | |
| TGAAACAGTGAAAGAAATTC+AGG | - | chr3_1:89469377-89469396 | Msa0385780:intron | 30.0% | |
| TCAAAAATTGAACTCAATCC+AGG | - | chr3_1:89469474-89469493 | Msa0385780:intron | 30.0% | |
| CTTTGAGTAAACTATGTATG+TGG | - | chr3_1:89469722-89469741 | Msa0385780:CDS | 30.0% | |
| AAACATTTCCAAGAGAATGA+TGG | - | chr3_1:89469970-89469989 | Msa0385780:intron | 30.0% | |
| ! | ATTTTGTACCATCATTCTCT+TGG | + | chr3_1:89469981-89470000 | None:intergenic | 30.0% |
| TGCATTATGCAATGTAGTTT+AGG | - | chr3_1:89470101-89470120 | Msa0385780:intron | 30.0% | |
| GCATTATGCAATGTAGTTTA+GGG | - | chr3_1:89470102-89470121 | Msa0385780:intron | 30.0% | |
| !!! | CTAGATATCTAGGTTTTGTT+TGG | - | chr3_1:89470161-89470180 | Msa0385780:intron | 30.0% |
| !!! | AGATATCTAGGTTTTGTTTG+GGG | - | chr3_1:89470163-89470182 | Msa0385780:intron | 30.0% |
| TTAGTGTCTTCAACCATAAA+AGG | + | chr3_1:89470389-89470408 | None:intergenic | 30.0% | |
| !!! | TTCATTTTTTTTTCAGGCTG+AGG | - | chr3_1:89470412-89470431 | Msa0385780:intron | 30.0% |
| CGTCAATTTACTAATAGAGT+TGG | + | chr3_1:89470591-89470610 | None:intergenic | 30.0% | |
| TTTGAACCTATGTAGTTAGT+TGG | - | chr3_1:89470696-89470715 | Msa0385780:CDS | 30.0% | |
| GAAGTTGAATCTAGTAGAAA+TGG | - | chr3_1:89470807-89470826 | Msa0385780:intron | 30.0% | |
| ACAACTATTTGAATTCTAGC+TGG | - | chr3_1:89470840-89470859 | Msa0385780:CDS | 30.0% | |
| AGAAAATCATATTCGAGACA+TGG | + | chr3_1:89470892-89470911 | None:intergenic | 30.0% | |
| !!! | CAATCATTTTTTGGTTTGCA+CGG | + | chr3_1:89470916-89470935 | None:intergenic | 30.0% |
| ! | AACAGACTGTTGTATTCTTT+TGG | - | chr3_1:89471041-89471060 | Msa0385780:CDS | 30.0% |
| TTTCAACAATTTCCTGATAC+TGG | + | chr3_1:89471140-89471159 | None:intergenic | 30.0% | |
| TAAGTTCCATTTCTGTAACT+CGG | + | chr3_1:89471238-89471257 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTGACCATTTGTGT+AGG | + | chr3_1:89471398-89471417 | None:intergenic | 30.0% |
| ACACAAATGGTCAAAAACAA+TGG | - | chr3_1:89471398-89471417 | Msa0385780:CDS | 30.0% | |
| TTCATATAAACTAGCAGTAG+TGG | + | chr3_1:89471742-89471761 | None:intergenic | 30.0% | |
| !! | GAATGGTGTGAAGTATTTTA+AGG | - | chr3_1:89471864-89471883 | Msa0385780:five_prime_UTR | 30.0% |
| ! | AATTTTATCATAGGGGGACT+AGG | + | chr3_1:89468423-89468442 | None:intergenic | 35.0% |
| TGGTATGAAGTGGTGTTTAT+TGG | + | chr3_1:89468448-89468467 | None:intergenic | 35.0% | |
| TTCCCATCTAAACATAACGA+TGG | - | chr3_1:89468561-89468580 | Msa0385780:CDS | 35.0% | |
| TCCCATCTAAACATAACGAT+GGG | - | chr3_1:89468562-89468581 | Msa0385780:CDS | 35.0% | |
| ACCCATCGTTATGTTTAGAT+GGG | + | chr3_1:89468566-89468585 | None:intergenic | 35.0% | |
| AACCCATCGTTATGTTTAGA+TGG | + | chr3_1:89468567-89468586 | None:intergenic | 35.0% | |
| ATTCGTCGATGAATTTGCAA+CGG | + | chr3_1:89468639-89468658 | None:intergenic | 35.0% | |
| CGGAAGAATCTTCAAATTGT+TGG | + | chr3_1:89468750-89468769 | None:intergenic | 35.0% | |
| ! | GATTCTTTTTCTGTATCCTC+TGG | + | chr3_1:89468877-89468896 | None:intergenic | 35.0% |
| ATCAGGAACTGAGGATAAAA+CGG | + | chr3_1:89468950-89468969 | None:intergenic | 35.0% | |
| ATCGTAAATAGGTTTGACGT+AGG | + | chr3_1:89468989-89469008 | None:intergenic | 35.0% | |
| ! | CAATTCTGCTTGGGAATTTT+TGG | - | chr3_1:89469086-89469105 | Msa0385780:CDS | 35.0% |
| CGTACTTTGAATTTCTCGTA+CGG | + | chr3_1:89469123-89469142 | None:intergenic | 35.0% | |
| TTCAAAGTACGTTACAGTCA+CGG | - | chr3_1:89469132-89469151 | Msa0385780:CDS | 35.0% | |
| !! | TTCTTTTTCATCCGTTACGT+TGG | + | chr3_1:89469178-89469197 | None:intergenic | 35.0% |
| !! | CGTAACGGATGAAAAAGAAA+AGG | - | chr3_1:89469179-89469198 | Msa0385780:CDS | 35.0% |
| AGTGTGACAGAAAATGAAGA+AGG | - | chr3_1:89469249-89469268 | Msa0385780:intron | 35.0% | |
| GTGTGACAGAAAATGAAGAA+GGG | - | chr3_1:89469250-89469269 | Msa0385780:intron | 35.0% | |
| TTGCTACATTCTTCTAACTC+CGG | + | chr3_1:89469330-89469349 | None:intergenic | 35.0% | |
| CATTTCCAAAATCACATTCC+CGG | + | chr3_1:89469427-89469446 | None:intergenic | 35.0% | |
| !! | ATTTTGGAAATGCTAGACGT+TGG | - | chr3_1:89469435-89469454 | Msa0385780:intron | 35.0% |
| ! | AATTGTACAACTTGCTTACC+TGG | + | chr3_1:89469495-89469514 | None:intergenic | 35.0% |
| TTCCACACATTTAACCATCA+GGG | + | chr3_1:89469626-89469645 | None:intergenic | 35.0% | |
| ATTCCACACATTTAACCATC+AGG | + | chr3_1:89469627-89469646 | None:intergenic | 35.0% | |
| TCAAGGAGTTTACAAAGACA+AGG | - | chr3_1:89469672-89469691 | Msa0385780:intron | 35.0% | |
| CAAGGAGTTTACAAAGACAA+GGG | - | chr3_1:89469673-89469692 | Msa0385780:intron | 35.0% | |
| AAGGAGTTTACAAAGACAAG+GGG | - | chr3_1:89469674-89469693 | Msa0385780:intron | 35.0% | |
| AAACTGATATGCAGAAGAGT+AGG | - | chr3_1:89469869-89469888 | Msa0385780:CDS | 35.0% | |
| AACTGATATGCAGAAGAGTA+GGG | - | chr3_1:89469870-89469889 | Msa0385780:CDS | 35.0% | |
| TTCAGTCAAACGGTTTCATT+AGG | - | chr3_1:89470071-89470090 | Msa0385780:intron | 35.0% | |
| AACCTAGATATCTAGATGTG+AGG | + | chr3_1:89470156-89470175 | None:intergenic | 35.0% | |
| ! | TCAGAGTCTTTGTTCTTTTC+TGG | - | chr3_1:89470276-89470295 | Msa0385780:intron | 35.0% |
| TGGATATCTTGTCAACTACT+TGG | + | chr3_1:89470571-89470590 | None:intergenic | 35.0% | |
| CAAGTACCAACTAACTACAT+AGG | + | chr3_1:89470705-89470724 | None:intergenic | 35.0% | |
| ! | CTATGTAGTTAGTTGGTACT+TGG | - | chr3_1:89470703-89470722 | Msa0385780:CDS | 35.0% |
| AATCATATTCGAGACATGGT+CGG | + | chr3_1:89470888-89470907 | None:intergenic | 35.0% | |
| ACCTTTCATCAGTAAGTAGA+CGG | + | chr3_1:89471077-89471096 | None:intergenic | 35.0% | |
| CTTACTGATGAAAGGTTTCT+CGG | - | chr3_1:89471081-89471100 | Msa0385780:CDS | 35.0% | |
| GCATCAATATTAGCATTGCA+AGG | + | chr3_1:89471198-89471217 | None:intergenic | 35.0% | |
| TCAAATCCGAGTTACAGAAA+TGG | - | chr3_1:89471229-89471248 | Msa0385780:CDS | 35.0% | |
| GGAACTTAAGCTTCTTAGAT+TGG | - | chr3_1:89471250-89471269 | Msa0385780:CDS | 35.0% | |
| TCTTACTAGCCAATCATTCA+GGG | + | chr3_1:89471304-89471323 | None:intergenic | 35.0% | |
| ATCTTACTAGCCAATCATTC+AGG | + | chr3_1:89471305-89471324 | None:intergenic | 35.0% | |
| GCTTCAGAAGAATTCAACAT+TGG | - | chr3_1:89471506-89471525 | Msa0385780:CDS | 35.0% | |
| GAAGAATTCAACATTGGACA+AGG | - | chr3_1:89471512-89471531 | Msa0385780:CDS | 35.0% | |
| AAAGTTGGACAAAATGGTGA+AGG | - | chr3_1:89471575-89471594 | Msa0385780:CDS | 35.0% | |
| GTTCCAATTGCAAAAGAACT+GGG | - | chr3_1:89471615-89471634 | Msa0385780:CDS | 35.0% | |
| ! | GATTCTATTAGCTTACAGTC+TGG | - | chr3_1:89471678-89471697 | Msa0385780:CDS | 35.0% |
| ! | ATTTTCATTGGGAAGGGTTG+TGG | + | chr3_1:89468468-89468487 | None:intergenic | 40.0% |
| ! | GGAGGAATTTTCATTGGGAA+GGG | + | chr3_1:89468474-89468493 | None:intergenic | 40.0% |
| ! | AGGAGGAATTTTCATTGGGA+AGG | + | chr3_1:89468475-89468494 | None:intergenic | 40.0% |
| TGGAAGAAATGAAGGAGAGT+GGG | + | chr3_1:89468730-89468749 | None:intergenic | 40.0% | |
| TTGGAAGAAATGAAGGAGAG+TGG | + | chr3_1:89468731-89468750 | None:intergenic | 40.0% | |
| ! | CTAGAAGATGATTTTGAGCG+TGG | + | chr3_1:89468808-89468827 | None:intergenic | 40.0% |
| GTTCTGATTCAGAATGCAGA+GGG | + | chr3_1:89468855-89468874 | None:intergenic | 40.0% | |
| AGTCACATTATCAGGAACTG+AGG | + | chr3_1:89468959-89468978 | None:intergenic | 40.0% | |
| GGAGAGTAGGAATCGTAAAT+AGG | + | chr3_1:89469000-89469019 | None:intergenic | 40.0% | |
| AATTCCCAAGCAGAATTGCT+CGG | + | chr3_1:89469084-89469103 | None:intergenic | 40.0% | |
| TTACACTGACACCAACGTAA+CGG | - | chr3_1:89469164-89469183 | Msa0385780:CDS | 40.0% | |
| ! | GGTTCTGTTTGAAAGAGCAT+CGG | - | chr3_1:89469398-89469417 | Msa0385780:intron | 40.0% |
| !! | TTTGAAAGAGCATCGGATTC+CGG | - | chr3_1:89469405-89469424 | Msa0385780:intron | 40.0% |
| TCCACACATTTAACCATCAG+GGG | + | chr3_1:89469625-89469644 | None:intergenic | 40.0% | |
| AAATGTGTGGAATCACCATG+TGG | - | chr3_1:89469634-89469653 | Msa0385780:intron | 40.0% | |
| GAAGCTGTATCATGAAGTCA+AGG | - | chr3_1:89469750-89469769 | Msa0385780:CDS | 40.0% | |
| AGATGTGAGGCTCTCAATTT+AGG | + | chr3_1:89470143-89470162 | None:intergenic | 40.0% | |
| AGCCTCACATCTAGATATCT+AGG | - | chr3_1:89470151-89470170 | Msa0385780:intron | 40.0% | |
| AATTGACGGAAGAAGAGCTT+TGG | - | chr3_1:89470603-89470622 | Msa0385780:CDS | 40.0% | |
| ! | GTAGTTAGTTGGTACTTGGT+AGG | - | chr3_1:89470707-89470726 | Msa0385780:CDS | 40.0% |
| CCTTTCATCAGTAAGTAGAC+GGG | + | chr3_1:89471076-89471095 | None:intergenic | 40.0% | |
| ATGAAAGGTTTCTCGGAATG+TGG | - | chr3_1:89471088-89471107 | Msa0385780:CDS | 40.0% | |
| ATGTTACAAACGCCAGTATC+AGG | - | chr3_1:89471125-89471144 | Msa0385780:CDS | 40.0% | |
| ! | TGAGGAGACATCTAAAGCTT+TGG | + | chr3_1:89471163-89471182 | None:intergenic | 40.0% |
| AATCATTCAGGGCTTTCACA+TGG | + | chr3_1:89471293-89471312 | None:intergenic | 40.0% | |
| ATGTGAAAGCCCTGAATGAT+TGG | - | chr3_1:89471292-89471311 | Msa0385780:CDS | 40.0% | |
| TGTTTGTGCTCCTACACAAA+TGG | - | chr3_1:89471385-89471404 | Msa0385780:CDS | 40.0% | |
| ! | AGTGAAAATTTTGGACAGGC+AGG | - | chr3_1:89471548-89471567 | Msa0385780:CDS | 40.0% |
| GGAGCAAAAGTTGGACAAAA+TGG | - | chr3_1:89471569-89471588 | Msa0385780:CDS | 40.0% | |
| GGTTCCAATTGCAAAAGAAC+TGG | - | chr3_1:89471614-89471633 | Msa0385780:CDS | 40.0% | |
| ! | TCTCCCAGTTCTTTTGCAAT+TGG | + | chr3_1:89471621-89471640 | None:intergenic | 40.0% |
| CAAAAGAACTGGGAGAAGTA+GGG | - | chr3_1:89471625-89471644 | Msa0385780:CDS | 40.0% | |
| AAAAGAACTGGGAGAAGTAG+GGG | - | chr3_1:89471626-89471645 | Msa0385780:CDS | 40.0% | |
| GAAACAGATCTTTGTTGCCA+TGG | - | chr3_1:89471704-89471723 | Msa0385780:CDS | 40.0% | |
| CGATGAATTTGCAACGGTCA+CGG | + | chr3_1:89468633-89468652 | None:intergenic | 45.0% | |
| ATGGAATCCCTCAGAACACT+TGG | - | chr3_1:89468703-89468722 | Msa0385780:CDS | 45.0% | |
| GGAAGAAATGAAGGAGAGTG+GGG | + | chr3_1:89468729-89468748 | None:intergenic | 45.0% | |
| ! | TGAGAGTGAGGGTTTGGTTT+CGG | + | chr3_1:89468773-89468792 | None:intergenic | 45.0% |
| !!! | TGGTTTTGAGAGTGAGGGTT+TGG | + | chr3_1:89468779-89468798 | None:intergenic | 45.0% |
| !!! | GGTGATGGTTTTGAGAGTGA+GGG | + | chr3_1:89468784-89468803 | None:intergenic | 45.0% |
| !!! | AGGTGATGGTTTTGAGAGTG+AGG | + | chr3_1:89468785-89468804 | None:intergenic | 45.0% |
| ! | GAAGATGATTTTGAGCGTGG+AGG | + | chr3_1:89468805-89468824 | None:intergenic | 45.0% |
| ! | GGTTCTGATTCAGAATGCAG+AGG | + | chr3_1:89468856-89468875 | None:intergenic | 45.0% |
| GCATTCTGAATCAGAACCAG+AGG | - | chr3_1:89468858-89468877 | Msa0385780:CDS | 45.0% | |
| AAAGTACGTTACAGTCACGG+TGG | - | chr3_1:89469135-89469154 | Msa0385780:CDS | 45.0% | |
| AAGTACGTTACAGTCACGGT+GGG | - | chr3_1:89469136-89469155 | Msa0385780:CDS | 45.0% | |
| !! | TTGAAAGAGCATCGGATTCC+GGG | - | chr3_1:89469406-89469425 | Msa0385780:intron | 45.0% |
| ! | GGATTCCGGGAATGTGATTT+TGG | - | chr3_1:89469419-89469438 | Msa0385780:intron | 45.0% |
| TCCCCTGATGGTTAAATGTG+TGG | - | chr3_1:89469621-89469640 | Msa0385780:intron | 45.0% | |
| !! | ACAGCGTCGGTAGAACTATT+GGG | + | chr3_1:89470037-89470056 | None:intergenic | 45.0% |
| TGAAACCGTTTGACTGAAGC+TGG | + | chr3_1:89470069-89470088 | None:intergenic | 45.0% | |
| GCTCTCAATTTAGGTGCAAG+TGG | + | chr3_1:89470134-89470153 | None:intergenic | 45.0% | |
| ! | AGCTTTGGCCGCAGATTAAT+AGG | - | chr3_1:89470618-89470637 | Msa0385780:CDS | 45.0% |
| CCCGTCTACTTACTGATGAA+AGG | - | chr3_1:89471073-89471092 | Msa0385780:CDS | 45.0% | |
| GCAAGGCTTTCTGTTGAATG+AGG | + | chr3_1:89471181-89471200 | None:intergenic | 45.0% | |
| CAGAATGATTCGACTCCCTT+TGG | - | chr3_1:89471351-89471370 | Msa0385780:CDS | 45.0% | |
| ! | TTGTGTAGGAGCACAAACAC+AGG | + | chr3_1:89471384-89471403 | None:intergenic | 45.0% |
| GAAGGCTAGAGAGAGAAAGA+TGG | - | chr3_1:89471593-89471612 | Msa0385780:CDS | 45.0% | |
| GCAAAAGAACTGGGAGAAGT+AGG | - | chr3_1:89471624-89471643 | Msa0385780:CDS | 45.0% | |
| TATCATAGGGGGACTAGGAG+TGG | + | chr3_1:89468418-89468437 | None:intergenic | 50.0% | |
| GGAAGGGTTGTGGTATGAAG+TGG | + | chr3_1:89468458-89468477 | None:intergenic | 50.0% | |
| ! | GATTTTGAGCGTGGAGGTGA+TGG | + | chr3_1:89468799-89468818 | None:intergenic | 50.0% |
| !! | AGGATAAAACGGTGTCGTGG+TGG | + | chr3_1:89468939-89468958 | None:intergenic | 50.0% |
| ! | CTGAGGATAAAACGGTGTCG+TGG | + | chr3_1:89468942-89468961 | None:intergenic | 50.0% |
| AAGTTTCCGGTCGTGTTCGA+CGG | + | chr3_1:89469030-89469049 | None:intergenic | 50.0% | |
| TCCTCCGAGCAATTCTGCTT+GGG | - | chr3_1:89469077-89469096 | Msa0385780:CDS | 50.0% | |
| AGTACGTTACAGTCACGGTG+GGG | - | chr3_1:89469137-89469156 | Msa0385780:CDS | 50.0% | |
| ATCACCATGTGGACGCAAAG+CGG | - | chr3_1:89469645-89469664 | Msa0385780:intron | 50.0% | |
| !! | CACAGCGTCGGTAGAACTAT+TGG | + | chr3_1:89470038-89470057 | None:intergenic | 50.0% |
| ! | CAATAGTTCTACCGACGCTG+TGG | - | chr3_1:89470036-89470055 | Msa0385780:intron | 50.0% |
| GTACGCCAGCTTCAGTCAAA+CGG | - | chr3_1:89470061-89470080 | Msa0385780:intron | 50.0% | |
| AACACAGGTGGTGCACCAAA+GGG | + | chr3_1:89471369-89471388 | None:intergenic | 50.0% | |
| AAACACAGGTGGTGCACCAA+AGG | + | chr3_1:89471370-89471389 | None:intergenic | 50.0% | |
| ! | TGTAGGAGCACAAACACAGG+TGG | + | chr3_1:89471381-89471400 | None:intergenic | 50.0% |
| ! | AGTGGCACTGAACTTCTCCA+TGG | + | chr3_1:89471724-89471743 | None:intergenic | 50.0% |
| GCAACGCCTCAAGACTTGAC+CGG | - | chr3_1:89468587-89468606 | Msa0385780:CDS | 55.0% | |
| ! | CTCAAGACTTGACCGGCTTC+CGG | - | chr3_1:89468594-89468613 | Msa0385780:CDS | 55.0% |
| ACGGTCACGGCACAATGACA+CGG | + | chr3_1:89468620-89468639 | None:intergenic | 55.0% | |
| CATGTGTGCCACGTGTGCAT+CGG | + | chr3_1:89468686-89468705 | None:intergenic | 55.0% | |
| AGTGGGGCCAAGTGTTCTGA+GGG | + | chr3_1:89468713-89468732 | None:intergenic | 55.0% | |
| ! | GAGTGAGGGTTTGGTTTCGG+CGG | + | chr3_1:89468770-89468789 | None:intergenic | 55.0% |
| ! | CGGTGACGGCGGATTTAACT+CGG | + | chr3_1:89469055-89469074 | None:intergenic | 55.0% |
| CAAGCAGAATTGCTCGGAGG+AGG | + | chr3_1:89469078-89469097 | None:intergenic | 55.0% | |
| CTCCTCCGAGCAATTCTGCT+TGG | - | chr3_1:89469076-89469095 | Msa0385780:CDS | 55.0% | |
| TCCCAAGCAGAATTGCTCGG+AGG | + | chr3_1:89469081-89469100 | None:intergenic | 55.0% | |
| TCCTTCGTCGAATCCCCTGA+TGG | - | chr3_1:89469609-89469628 | Msa0385780:intron | 55.0% | |
| ACCATCAGGGGATTCGACGA+AGG | + | chr3_1:89469613-89469632 | None:intergenic | 55.0% | |
| CAATCCGCTTTGCGTCCACA+TGG | + | chr3_1:89469652-89469671 | None:intergenic | 55.0% | |
| !! | GGACGCAAAGCGGATTGTCA+AGG | - | chr3_1:89469655-89469674 | Msa0385780:intron | 55.0% |
| ! | TAGTTCTACCGACGCTGTGG+TGG | - | chr3_1:89470039-89470058 | Msa0385780:intron | 55.0% |
| GGACAGGCAGGAGCAAAAGT+TGG | - | chr3_1:89471560-89471579 | Msa0385780:CDS | 55.0% | |
| CGGAAGCCGGTCAAGTCTTG+AGG | + | chr3_1:89468596-89468615 | None:intergenic | 60.0% | |
| ACAATGACACGGCCGGAAGC+CGG | + | chr3_1:89468609-89468628 | None:intergenic | 60.0% | |
| TCACGGCACAATGACACGGC+CGG | + | chr3_1:89468616-89468635 | None:intergenic | 60.0% | |
| !! | CGGCGAGGGAGTAGCTTTGA+CGG | + | chr3_1:89468666-89468685 | None:intergenic | 60.0% |
| CGATGCACACGTGGCACACA+TGG | - | chr3_1:89468684-89468703 | Msa0385780:CDS | 60.0% | |
| GAGTGGGGCCAAGTGTTCTG+AGG | + | chr3_1:89468714-89468733 | None:intergenic | 60.0% | |
| TTTCCGGTCGTGTTCGACGG+AGG | + | chr3_1:89469027-89469046 | None:intergenic | 60.0% | |
| GCAGAATTGCTCGGAGGAGG+CGG | + | chr3_1:89469075-89469094 | None:intergenic | 60.0% | |
| CGTTACAGTCACGGTGGGGA+CGG | - | chr3_1:89469141-89469160 | Msa0385780:CDS | 60.0% | |
| ! | TGCCACGTGTGCATCGGCGA+GGG | + | chr3_1:89468680-89468699 | None:intergenic | 65.0% |
| TTGCTCGGAGGAGGCGGTGA+CGG | + | chr3_1:89469069-89469088 | None:intergenic | 65.0% | |
| CTGGCGTACCACCACAGCGT+CGG | + | chr3_1:89470050-89470069 | None:intergenic | 65.0% | |
| CTCCCTCGCCGATGCACACG+TGG | - | chr3_1:89468675-89468694 | Msa0385780:CDS | 70.0% | |
| ! | GTGCCACGTGTGCATCGGCG+AGG | + | chr3_1:89468681-89468700 | None:intergenic | 70.0% |
| CGACGGAGGCGGAGGAGAGT+AGG | + | chr3_1:89469013-89469032 | None:intergenic | 70.0% | |
| GTCGTGTTCGACGGAGGCGG+AGG | + | chr3_1:89469021-89469040 | None:intergenic | 70.0% | |
| CCGGTCGTGTTCGACGGAGG+CGG | + | chr3_1:89469024-89469043 | None:intergenic | 70.0% | |
| CCGCCTCCGTCGAACACGAC+CGG | - | chr3_1:89469021-89469040 | Msa0385780:CDS | 70.0% | |
| ! | CTCGGAGGAGGCGGTGACGG+CGG | + | chr3_1:89469066-89469085 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 89468413 | 89471913 | 89468413 | ID=Msa0385780;Name=Msa0385780 |
| chr3_1 | mRNA | 89468413 | 89471913 | 89468413 | ID=Msa0385780-mRNA-1;Parent=Msa0385780;Name=Msa0385780-mRNA-1;_AED=0.08;_eAED=0.08;_QI=167|1|1|1|1|1|4|92|684 |
| chr3_1 | exon | 89468413 | 89469231 | 89468413 | ID=Msa0385780-mRNA-1:exon:24372;Parent=Msa0385780-mRNA-1 |
| chr3_1 | exon | 89469675 | 89469898 | 89469675 | ID=Msa0385780-mRNA-1:exon:24371;Parent=Msa0385780-mRNA-1 |
| chr3_1 | exon | 89470555 | 89470742 | 89470555 | ID=Msa0385780-mRNA-1:exon:24370;Parent=Msa0385780-mRNA-1 |
| chr3_1 | exon | 89470831 | 89471913 | 89470831 | ID=Msa0385780-mRNA-1:exon:24369;Parent=Msa0385780-mRNA-1 |
| chr3_1 | five_prime_UTR | 89471747 | 89471913 | 89471747 | ID=Msa0385780-mRNA-1:five_prime_utr;Parent=Msa0385780-mRNA-1 |
| chr3_1 | CDS | 89470831 | 89471746 | 89470831 | ID=Msa0385780-mRNA-1:cds;Parent=Msa0385780-mRNA-1 |
| chr3_1 | CDS | 89470555 | 89470742 | 89470555 | ID=Msa0385780-mRNA-1:cds;Parent=Msa0385780-mRNA-1 |
| chr3_1 | CDS | 89469675 | 89469898 | 89469675 | ID=Msa0385780-mRNA-1:cds;Parent=Msa0385780-mRNA-1 |
| chr3_1 | CDS | 89468505 | 89469231 | 89468505 | ID=Msa0385780-mRNA-1:cds;Parent=Msa0385780-mRNA-1 |
| chr3_1 | three_prime_UTR | 89468413 | 89468504 | 89468413 | ID=Msa0385780-mRNA-1:three_prime_utr;Parent=Msa0385780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
