Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386080 | XP_013462297.1 | 96.703 | 364 | 11 | 1 | 10 | 372 | 3 | 366 | 0.0 | 736 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386080 | sp|Q8LAH7|OPR1_ARATH | 68.852 | 366 | 109 | 1 | 10 | 370 | 5 | 370 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386080 | A0A072V3D1 | 96.703 | 364 | 11 | 1 | 10 | 372 | 3 | 366 | 0.0 | 736 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0186270 | Msa0386080 | 0.823775 | 1.155090e-53 | -8.615850e-47 |
| Msa0386080 | Msa0387340 | 0.831671 | 1.462434e-55 | -8.615850e-47 |
| Msa0386080 | Msa1173540 | 0.838949 | 2.121885e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386080 | MtrunA17_Chr3g0144001 | 96.703 | 364 | 11 | 1 | 10 | 372 | 3 | 366 | 0.0 | 736 |
| Msa0386080 | MtrunA17_Chr5g0394891 | 70.492 | 366 | 103 | 1 | 9 | 369 | 4 | 369 | 0.0 | 555 |
| Msa0386080 | MtrunA17_Chr5g0394771 | 70.986 | 355 | 102 | 1 | 15 | 369 | 38 | 391 | 0.0 | 545 |
| Msa0386080 | MtrunA17_Chr5g0394861 | 69.613 | 362 | 103 | 2 | 15 | 369 | 10 | 371 | 0.0 | 534 |
| Msa0386080 | MtrunA17_Chr5g0394751 | 69.577 | 355 | 107 | 1 | 15 | 369 | 6 | 359 | 0.0 | 531 |
| Msa0386080 | MtrunA17_Chr5g0395841 | 67.688 | 359 | 111 | 1 | 15 | 368 | 12 | 370 | 0.0 | 531 |
| Msa0386080 | MtrunA17_Chr5g0394841 | 67.680 | 362 | 110 | 2 | 15 | 369 | 10 | 371 | 0.0 | 525 |
| Msa0386080 | MtrunA17_Chr5g0394811 | 66.389 | 360 | 116 | 2 | 15 | 369 | 119 | 478 | 0.0 | 515 |
| Msa0386080 | MtrunA17_Chr5g0394811 | 79.208 | 101 | 21 | 0 | 23 | 123 | 1 | 101 | 8.05e-51 | 176 |
| Msa0386080 | MtrunA17_Chr4g0070561 | 53.514 | 370 | 154 | 5 | 17 | 368 | 19 | 388 | 8.26e-138 | 398 |
| Msa0386080 | MtrunA17_Chr5g0394791 | 64.072 | 167 | 49 | 2 | 15 | 176 | 9 | 169 | 7.77e-71 | 220 |
| Msa0386080 | MtrunA17_Chr5g0394801 | 54.255 | 188 | 59 | 1 | 174 | 361 | 25 | 185 | 4.76e-66 | 209 |
| Msa0386080 | MtrunA17_Chr3g0130471 | 72.093 | 43 | 12 | 0 | 194 | 236 | 1 | 43 | 4.88e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386080 | AT1G76680.1 | 68.852 | 366 | 109 | 1 | 10 | 370 | 5 | 370 | 0.0 | 536 |
| Msa0386080 | AT1G76690.1 | 67.760 | 366 | 113 | 1 | 10 | 370 | 7 | 372 | 0.0 | 535 |
| Msa0386080 | AT1G76680.2 | 64.450 | 391 | 109 | 2 | 10 | 370 | 5 | 395 | 0.0 | 523 |
| Msa0386080 | AT1G09400.1 | 66.154 | 325 | 109 | 1 | 23 | 347 | 1 | 324 | 3.62e-164 | 462 |
| Msa0386080 | AT2G06050.2 | 52.139 | 374 | 157 | 4 | 17 | 368 | 12 | 385 | 6.17e-136 | 393 |
| Msa0386080 | AT2G06050.1 | 52.139 | 374 | 157 | 4 | 17 | 368 | 12 | 385 | 6.17e-136 | 393 |
| Msa0386080 | AT2G06050.3 | 52.139 | 374 | 157 | 4 | 17 | 368 | 12 | 385 | 6.17e-136 | 393 |
| Msa0386080 | AT1G09400.2 | 67.170 | 265 | 86 | 1 | 83 | 347 | 2 | 265 | 6.65e-134 | 383 |
| Msa0386080 | AT1G17990.1 | 65.251 | 259 | 88 | 2 | 9 | 266 | 1 | 258 | 1.96e-128 | 370 |
| Msa0386080 | AT1G18020.1 | 65.251 | 259 | 88 | 2 | 9 | 266 | 1 | 258 | 1.96e-128 | 370 |
| Msa0386080 | AT1G17990.2 | 62.548 | 259 | 87 | 3 | 9 | 266 | 1 | 250 | 1.08e-119 | 347 |
Find 101 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCAAATACCAGGTGTATT+TGG | 0.127154 | 3_1:+89833944 | None:intergenic |
| CTGAAGTCATTGACAACTTT+TGG | 0.134544 | 3_1:+89833012 | None:intergenic |
| AAGGACCTTGTTCTTGTTAA+AGG | 0.178211 | 3_1:+89834588 | None:intergenic |
| TGTCGTTCACTTTGTCCTTT+AGG | 0.228951 | 3_1:+89832597 | None:intergenic |
| ACCCAAATACACCTGGTATT+TGG | 0.251049 | 3_1:-89833946 | Msa0386080:CDS |
| GATCTTTCTCATGGGCATTA+AGG | 0.258096 | 3_1:+89832313 | None:intergenic |
| CTAATAATTACCTGCTTCTA+TGG | 0.268887 | 3_1:+89832972 | None:intergenic |
| CCCAATCTCAAGCACAAATA+AGG | 0.295144 | 3_1:-89833100 | Msa0386080:CDS |
| TTCTTGATTGGGGAAGCCTC+AGG | 0.303380 | 3_1:-89834504 | Msa0386080:CDS |
| GCCTTATTTGTGCTTGAGAT+TGG | 0.310703 | 3_1:+89833099 | None:intergenic |
| TCTTATCAGCCTTGTTCAAT+TGG | 0.321623 | 3_1:+89832147 | None:intergenic |
| GGTGCGGATTTGGTAGCTTA+TGG | 0.322401 | 3_1:-89832221 | Msa0386080:CDS |
| TACCAAATCCGCACCATTGC+TGG | 0.328132 | 3_1:+89832229 | None:intergenic |
| CCTTATTTGTGCTTGAGATT+GGG | 0.328207 | 3_1:+89833100 | None:intergenic |
| CAAAGGGTGGCTTCTTGATT+GGG | 0.332102 | 3_1:-89834515 | Msa0386080:CDS |
| ACAAAGGGTGGCTTCTTGAT+TGG | 0.332916 | 3_1:-89834516 | Msa0386080:CDS |
| GCATCCAACTCAAATCTTCT+AGG | 0.344741 | 3_1:+89832170 | None:intergenic |
| AATGGAACATTTATTGTTGC+TGG | 0.345581 | 3_1:-89832287 | Msa0386080:CDS |
| TCCAAATACCAGGTGTATTT+GGG | 0.345635 | 3_1:+89833945 | None:intergenic |
| GCTAAGTCATTAAGTGAATT+AGG | 0.356165 | 3_1:-89832404 | Msa0386080:CDS |
| GGCCAGCAATGGTGCGGATT+TGG | 0.384528 | 3_1:-89832231 | Msa0386080:CDS |
| TACACCAATGATCCTGTTGT+TGG | 0.393076 | 3_1:-89832116 | Msa0386080:CDS |
| CTTATCAGCCTTGTTCAATT+GGG | 0.402003 | 3_1:+89832148 | None:intergenic |
| TCAAATCTTCTAGGAAGATC+TGG | 0.403955 | 3_1:+89832179 | None:intergenic |
| GACTCTAACCCTCATGCTTT+AGG | 0.410599 | 3_1:-89832437 | Msa0386080:CDS |
| TTGTTGCTGGTGGATACAAT+AGG | 0.419806 | 3_1:-89832274 | Msa0386080:CDS |
| CATGGGCATTAAGGACTCAT+TGG | 0.438978 | 3_1:+89832322 | None:intergenic |
| GTGGAGATACATGGAGCTAA+TGG | 0.442093 | 3_1:-89832638 | Msa0386080:CDS |
| AAAGCAGTTGTTGATGAGAT+TGG | 0.442364 | 3_1:-89832515 | Msa0386080:CDS |
| TCTTGATTGGGGAAGCCTCA+GGG | 0.444023 | 3_1:-89834503 | Msa0386080:CDS |
| GAGAATAAGAAAGTGGTTGA+AGG | 0.446077 | 3_1:-89834799 | Msa0386080:CDS |
| CTTATTTGTGCTTGAGATTG+GGG | 0.454648 | 3_1:+89833101 | None:intergenic |
| CCATGTTGTATGGGGTGAGA+AGG | 0.460955 | 3_1:+89834761 | None:intergenic |
| AACAAGGTCCTTCAATTTCG+TGG | 0.462495 | 3_1:-89834577 | Msa0386080:CDS |
| ATATCCAACAACAGGATCAT+TGG | 0.464074 | 3_1:+89832112 | None:intergenic |
| GCTGGAAGAGTGTCCAACTA+TGG | 0.469322 | 3_1:-89833839 | Msa0386080:intron |
| GTTGGAGCTGTTCATGAGAA+AGG | 0.473716 | 3_1:-89833890 | Msa0386080:CDS |
| TCATGAACAGCTCCAACAAT+GGG | 0.476202 | 3_1:+89833896 | None:intergenic |
| TCAAACATGGTGCACATCCC+AGG | 0.477008 | 3_1:+89832356 | None:intergenic |
| CTTGCTTGATCAATTCCTAA+AGG | 0.484914 | 3_1:-89832612 | Msa0386080:CDS |
| TATTCTCAACGAACAACAAA+GGG | 0.489010 | 3_1:-89834531 | Msa0386080:CDS |
| TATTGTCATGTCATTGAACC+TGG | 0.489334 | 3_1:-89832374 | Msa0386080:CDS |
| CTCATGAACAGCTCCAACAA+TGG | 0.489730 | 3_1:+89833895 | None:intergenic |
| TCCATTGAAGATCTTTCTCA+TGG | 0.490323 | 3_1:+89832304 | None:intergenic |
| CCCATGAGAAAGATCTTCAA+TGG | 0.491062 | 3_1:-89832305 | Msa0386080:CDS |
| GTTGTGAGACGTCGAGGAGG+TGG | 0.497052 | 3_1:+89833045 | None:intergenic |
| CATGTTGTATGGGGTGAGAA+GGG | 0.498945 | 3_1:+89834762 | None:intergenic |
| TAATCAGTATATCCAACAAC+AGG | 0.503211 | 3_1:+89832104 | None:intergenic |
| CTAAAACCAGATACCATAGT+TGG | 0.509794 | 3_1:+89833826 | None:intergenic |
| GGAAGAAGAGAATAAGAAAG+TGG | 0.510295 | 3_1:-89834806 | Msa0386080:CDS |
| GAAGCATGGAAACCCATTGT+TGG | 0.513600 | 3_1:-89833908 | Msa0386080:CDS |
| TGGTATTTGGACAAGAGAAC+AGG | 0.514806 | 3_1:-89833933 | Msa0386080:CDS |
| TCTTCCTAGAAGATTTGAGT+TGG | 0.518058 | 3_1:-89832174 | Msa0386080:CDS |
| TTTGATGGAGTGGAGATACA+TGG | 0.518838 | 3_1:-89832647 | Msa0386080:CDS |
| CATTCACAATAATCAGCATA+AGG | 0.519406 | 3_1:+89832464 | None:intergenic |
| CCTTCTCACCCCATACAACA+TGG | 0.541714 | 3_1:-89834761 | Msa0386080:CDS |
| CTTGATTGGGGAAGCCTCAG+GGG | 0.545878 | 3_1:-89834502 | Msa0386080:CDS |
| CGGATTTGGTAGCTTATGGA+AGG | 0.547082 | 3_1:-89832217 | Msa0386080:CDS |
| AACGACAGAGATGATGAGTA+TGG | 0.548461 | 3_1:-89832581 | Msa0386080:CDS |
| CCATTGAAGATCTTTCTCAT+GGG | 0.558552 | 3_1:+89832305 | None:intergenic |
| GGAACATTTATTGTTGCTGG+TGG | 0.563883 | 3_1:-89832284 | Msa0386080:CDS |
| CAAGAGAACAGGTGGAAGCA+TGG | 0.564931 | 3_1:-89833922 | Msa0386080:CDS |
| TGTTCTCTTGTCCAAATACC+AGG | 0.570132 | 3_1:+89833935 | None:intergenic |
| GAAAATTCAATCTGTCCCAC+AGG | 0.576865 | 3_1:-89834738 | Msa0386080:intron |
| AAAGGGTGGCTTCTTGATTG+GGG | 0.577699 | 3_1:-89834514 | Msa0386080:CDS |
| TCGTTGTCGCTTCCCTCTAG+AGG | 0.579003 | 3_1:-89832543 | Msa0386080:CDS |
| TTATTCTCAACGAACAACAA+AGG | 0.581092 | 3_1:-89834532 | Msa0386080:CDS |
| TATGCTGATTATTGTGAATG+TGG | 0.581554 | 3_1:-89832461 | Msa0386080:CDS |
| ACTGCTTTCACAACCTCTAG+AGG | 0.583197 | 3_1:+89832530 | None:intergenic |
| AACAATGTGTTGGCCAGCAA+TGG | 0.583715 | 3_1:-89832242 | Msa0386080:CDS |
| TGAACAGGTTACCAACCAGA+TGG | 0.587082 | 3_1:-89833129 | Msa0386080:intron |
| AGTTGTCAATGACTTCAGAA+TGG | 0.592608 | 3_1:-89833007 | Msa0386080:CDS |
| TGGTTGAGCCACGAAATTGA+AGG | 0.596135 | 3_1:+89834569 | None:intergenic |
| GGTGGATACAATAGGACTGA+AGG | 0.596483 | 3_1:-89832266 | Msa0386080:CDS |
| GGGGTCTCAGACACTGCACA+AGG | 0.597651 | 3_1:-89834483 | Msa0386080:CDS |
| TTGTGAGACGTCGAGGAGGT+GGG | 0.604708 | 3_1:+89833046 | None:intergenic |
| TTATTTGTGCTTGAGATTGG+GGG | 0.607021 | 3_1:+89833102 | None:intergenic |
| GACTGAAGGAAACAATGTGT+TGG | 0.609986 | 3_1:-89832252 | Msa0386080:CDS |
| ACAGAGATGATGAGTATGGT+GGG | 0.612337 | 3_1:-89832577 | Msa0386080:CDS |
| ATGTAGATGCCTAAAGCATG+AGG | 0.612576 | 3_1:+89832428 | None:intergenic |
| TCATGCTTTAGGCATCTACA+TGG | 0.616635 | 3_1:-89832426 | Msa0386080:CDS |
| GAGATTGGAGCTGACAAAGT+TGG | 0.616749 | 3_1:-89832500 | Msa0386080:CDS |
| CTGCTTTCACAACCTCTAGA+GGG | 0.620027 | 3_1:+89832531 | None:intergenic |
| GACAGAGATGATGAGTATGG+TGG | 0.624080 | 3_1:-89832578 | Msa0386080:CDS |
| TCATCGGTTGTGAGACGTCG+AGG | 0.630333 | 3_1:+89833039 | None:intergenic |
| ATGTTGTATGGGGTGAGAAG+GGG | 0.635447 | 3_1:+89834763 | None:intergenic |
| ATTGTCATGTCATTGAACCT+GGG | 0.637262 | 3_1:-89832373 | Msa0386080:CDS |
| TTGCACCTTTAACAAGAACA+AGG | 0.637602 | 3_1:-89834593 | Msa0386080:CDS |
| TCTCAACGAACAACAAAGGG+TGG | 0.642936 | 3_1:-89834528 | Msa0386080:CDS |
| AATAAGGCACTACAAAAGCA+AGG | 0.645729 | 3_1:-89833084 | Msa0386080:CDS |
| TGAAGGTACCCAAATACACC+TGG | 0.648170 | 3_1:-89833953 | Msa0386080:intron |
| TGCAGTGTCTGAGACCCCTG+AGG | 0.651692 | 3_1:+89834488 | None:intergenic |
| TATTTGGACAAGAGAACAGG+TGG | 0.653872 | 3_1:-89833930 | Msa0386080:CDS |
| GTTGGATGCCCAATTGAACA+AGG | 0.658985 | 3_1:-89832156 | Msa0386080:CDS |
| CTTCTCACCCCATACAACAT+GGG | 0.659177 | 3_1:-89834760 | Msa0386080:CDS |
| GGAGCTGTTCATGAGAAAGG+AGG | 0.677401 | 3_1:-89833887 | Msa0386080:CDS |
| TGTAGATGCCTAAAGCATGA+GGG | 0.695124 | 3_1:+89832429 | None:intergenic |
| TGTGTTGGCCAGCAATGGTG+CGG | 0.698432 | 3_1:-89832237 | Msa0386080:CDS |
| GAATAATAAAGAGCAGCATG+TGG | 0.702052 | 3_1:+89834549 | None:intergenic |
| TCGGTTGTGAGACGTCGAGG+AGG | 0.709608 | 3_1:+89833042 | None:intergenic |
| GGGTCTCAGACACTGCACAA+GGG | 0.738404 | 3_1:-89834482 | Msa0386080:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAAAAAAAAAAAAAACAT+TGG | + | chr3_1:89832731-89832750 | None:intergenic | 10.0% |
| !!! | AAGATTTTTTTAAAACTAAT+GGG | + | chr3_1:89833164-89833183 | None:intergenic | 10.0% |
| !!! | AAAGATTTTTTTAAAACTAA+TGG | + | chr3_1:89833165-89833184 | None:intergenic | 10.0% |
| !!! | ATTAGTTTTAAAAAAATCTT+TGG | - | chr3_1:89833164-89833183 | Msa0386080:intron | 10.0% |
| !!! | TTAGTTTTAAAAAAATCTTT+GGG | - | chr3_1:89833165-89833184 | Msa0386080:intron | 10.0% |
| !!! | TTACTTTTTAAAAAATCTTT+GGG | + | chr3_1:89833425-89833444 | None:intergenic | 10.0% |
| !!! | ATTACTTTTTAAAAAATCTT+TGG | + | chr3_1:89833426-89833445 | None:intergenic | 10.0% |
| !!! | AAAGATTTTTTAAAAAGTAA+TGG | - | chr3_1:89833425-89833444 | Msa0386080:intron | 10.0% |
| !!! | AAGATTTTTTAAAAAGTAAT+GGG | - | chr3_1:89833426-89833445 | Msa0386080:intron | 10.0% |
| !! | TATAAAACTAAAATAAATAC+AGG | - | chr3_1:89834213-89834232 | Msa0386080:intron | 10.0% |
| !! | TAAATAAATTATTTACCTGT+GGG | + | chr3_1:89832164-89832183 | None:intergenic | 15.0% |
| !!! | AAATAACATCTCTATTTTTT+TGG | - | chr3_1:89832494-89832513 | Msa0386080:CDS | 15.0% |
| !!! | AATAACATCTCTATTTTTTT+GGG | - | chr3_1:89832495-89832514 | Msa0386080:CDS | 15.0% |
| !!! | ATTGTAAAAATGTTTTTTGT+AGG | + | chr3_1:89832571-89832590 | None:intergenic | 15.0% |
| !!! | TACAAAAAACATTTTTACAA+TGG | - | chr3_1:89832570-89832589 | Msa0386080:CDS | 15.0% |
| !!! | TGTGTTTTATTACATTAAAA+TGG | - | chr3_1:89833526-89833545 | Msa0386080:intron | 15.0% |
| !!! | GTGTTTTATTACATTAAAAT+GGG | - | chr3_1:89833527-89833546 | Msa0386080:intron | 15.0% |
| !! | TTCTTAGATAAAATAATTCT+TGG | - | chr3_1:89833650-89833669 | Msa0386080:intron | 15.0% |
| !! | TGCAATATCAATTTATTATT+TGG | - | chr3_1:89833935-89833954 | Msa0386080:CDS | 15.0% |
| !! | CTAAATAAATTATTTACCTG+TGG | + | chr3_1:89832165-89832184 | None:intergenic | 20.0% |
| !! | ACAAATTTGATTGTTAACAT+TGG | + | chr3_1:89832768-89832787 | None:intergenic | 20.0% |
| !! | ACAATGAATAGTTACAATAT+AGG | + | chr3_1:89832832-89832851 | None:intergenic | 20.0% |
| !! | TATTAAAAGACGAATTGTTT+AGG | - | chr3_1:89833208-89833227 | Msa0386080:intron | 20.0% |
| !! | ACTAAACAATTTACTTCAAA+TGG | - | chr3_1:89833601-89833620 | Msa0386080:intron | 20.0% |
| !! | ATAAAATTGTAATATCATGC+AGG | - | chr3_1:89834029-89834048 | Msa0386080:intron | 20.0% |
| !! | TAAAATTGTAATATCATGCA+GGG | - | chr3_1:89834030-89834049 | Msa0386080:intron | 20.0% |
| !!! | AAAATAAATACAGGTTTTGA+TGG | - | chr3_1:89834222-89834241 | Msa0386080:intron | 20.0% |
| !!! | ATTTTTGTGTGTGTCTTATT+AGG | - | chr3_1:89832261-89832280 | Msa0386080:CDS | 25.0% |
| !! | CCAACAAATAATCTAAAGTT+CGG | + | chr3_1:89833293-89833312 | None:intergenic | 25.0% |
| ! | TGGTTAATAAACTAAGAACT+CGG | - | chr3_1:89833621-89833640 | Msa0386080:intron | 25.0% |
| ! | TGAATTTTCCCATGTTGTAT+GGG | + | chr3_1:89832135-89832154 | None:intergenic | 30.0% |
| ! | TTGAATTTTCCCATGTTGTA+TGG | + | chr3_1:89832136-89832155 | None:intergenic | 30.0% |
| AGTTCAAATCAATGTGATGA+GGG | + | chr3_1:89832199-89832218 | None:intergenic | 30.0% | |
| AAGTTCAAATCAATGTGATG+AGG | + | chr3_1:89832200-89832219 | None:intergenic | 30.0% | |
| TTATTCTCAACGAACAACAA+AGG | - | chr3_1:89832352-89832371 | Msa0386080:CDS | 30.0% | |
| TATTCTCAACGAACAACAAA+GGG | - | chr3_1:89832353-89832372 | Msa0386080:CDS | 30.0% | |
| TGAGCTTGAGAACAAAAATA+GGG | + | chr3_1:89832439-89832458 | None:intergenic | 30.0% | |
| ATGAGCTTGAGAACAAAAAT+AGG | + | chr3_1:89832440-89832459 | None:intergenic | 30.0% | |
| GTGTATATGTATGTAATGAC+TGG | - | chr3_1:89832594-89832613 | Msa0386080:CDS | 30.0% | |
| TTAGATCAAATGAGATGCAA+TGG | - | chr3_1:89832694-89832713 | Msa0386080:intron | 30.0% | |
| !! | TCTCAATGTTTTTGAATCCT+TGG | - | chr3_1:89832904-89832923 | Msa0386080:intron | 30.0% |
| ! | TTTGAATCCTTGGTAATTGA+AGG | - | chr3_1:89832914-89832933 | Msa0386080:intron | 30.0% |
| ! | GCATATTCTTTTGTCAACTT+TGG | - | chr3_1:89833019-89833038 | Msa0386080:CDS | 30.0% |
| ! | CGAATTGTTTAGGAGAATTT+TGG | - | chr3_1:89833218-89833237 | Msa0386080:intron | 30.0% |
| AAAAACTGATGACACAAACA+AGG | + | chr3_1:89833246-89833265 | None:intergenic | 30.0% | |
| CCGAACTTTAGATTATTTGT+TGG | - | chr3_1:89833290-89833309 | Msa0386080:intron | 30.0% | |
| AACGTTCTATCGATATATGT+AGG | + | chr3_1:89833733-89833752 | None:intergenic | 30.0% | |
| ! | TGAAGTCATTGACAACTTTT+GGG | + | chr3_1:89833874-89833893 | None:intergenic | 30.0% |
| CTAATAATTACCTGCTTCTA+TGG | + | chr3_1:89833915-89833934 | None:intergenic | 30.0% | |
| CTCTAGTGTAATCTAATTAG+AGG | + | chr3_1:89834066-89834085 | None:intergenic | 30.0% | |
| CATTCACAATAATCAGCATA+AGG | + | chr3_1:89834423-89834442 | None:intergenic | 30.0% | |
| ! | TATGCTGATTATTGTGAATG+TGG | - | chr3_1:89834423-89834442 | Msa0386080:intron | 30.0% |
| GCTAAGTCATTAAGTGAATT+AGG | - | chr3_1:89834480-89834499 | Msa0386080:intron | 30.0% | |
| AATGGAACATTTATTGTTGC+TGG | - | chr3_1:89834597-89834616 | Msa0386080:CDS | 30.0% | |
| TAATCAGTATATCCAACAAC+AGG | + | chr3_1:89834783-89834802 | None:intergenic | 30.0% | |
| !! | CTAGTAGCATTTTCAAGAAA+TGG | + | chr3_1:89834807-89834826 | None:intergenic | 30.0% |
| GGAAGAAGAGAATAAGAAAG+TGG | - | chr3_1:89832078-89832097 | Msa0386080:CDS | 35.0% | |
| GAGAATAAGAAAGTGGTTGA+AGG | - | chr3_1:89832085-89832104 | Msa0386080:CDS | 35.0% | |
| ! | GAATTTTCCCATGTTGTATG+GGG | + | chr3_1:89832134-89832153 | None:intergenic | 35.0% |
| TTGCACCTTTAACAAGAACA+AGG | - | chr3_1:89832291-89832310 | Msa0386080:CDS | 35.0% | |
| AAGGACCTTGTTCTTGTTAA+AGG | + | chr3_1:89832299-89832318 | None:intergenic | 35.0% | |
| GAATAATAAAGAGCAGCATG+TGG | + | chr3_1:89832338-89832357 | None:intergenic | 35.0% | |
| GAGAACAAAAATAGGGTAGT+TGG | + | chr3_1:89832432-89832451 | None:intergenic | 35.0% | |
| TCCAAATACCAGGTGTATTT+GGG | + | chr3_1:89832942-89832961 | None:intergenic | 35.0% | |
| CTAAAACCAGATACCATAGT+TGG | + | chr3_1:89833061-89833080 | None:intergenic | 35.0% | |
| TACTTGCGTTAGACAATTCT+TGG | + | chr3_1:89833345-89833364 | None:intergenic | 35.0% | |
| AGAATTGTCTAACGCAAGTA+AGG | - | chr3_1:89833345-89833364 | Msa0386080:intron | 35.0% | |
| ! | TCGATAGAACGTTTTTGAAC+AGG | - | chr3_1:89833740-89833759 | Msa0386080:intron | 35.0% |
| TTATTTGTGCTTGAGATTGG+GGG | + | chr3_1:89833785-89833804 | None:intergenic | 35.0% | |
| CTTATTTGTGCTTGAGATTG+GGG | + | chr3_1:89833786-89833805 | None:intergenic | 35.0% | |
| ! | CCTTATTTGTGCTTGAGATT+GGG | + | chr3_1:89833787-89833806 | None:intergenic | 35.0% |
| ! | AATAAGGCACTACAAAAGCA+AGG | - | chr3_1:89833800-89833819 | Msa0386080:intron | 35.0% |
| !!! | GACAACTTTTGGGATTTCAT+CGG | + | chr3_1:89833864-89833883 | None:intergenic | 35.0% |
| ! | CTGAAGTCATTGACAACTTT+TGG | + | chr3_1:89833875-89833894 | None:intergenic | 35.0% |
| AGTTGTCAATGACTTCAGAA+TGG | - | chr3_1:89833877-89833896 | Msa0386080:CDS | 35.0% | |
| ACATCATTGCTATGTATGCA+AGG | + | chr3_1:89834094-89834113 | None:intergenic | 35.0% | |
| !! | AAATACAGGTTTTGATGGAG+TGG | - | chr3_1:89834227-89834246 | Msa0386080:intron | 35.0% |
| CTTGCTTGATCAATTCCTAA+AGG | - | chr3_1:89834272-89834291 | Msa0386080:intron | 35.0% | |
| ! | AAAGCAGTTGTTGATGAGAT+TGG | - | chr3_1:89834369-89834388 | Msa0386080:intron | 35.0% |
| TATTGTCATGTCATTGAACC+TGG | - | chr3_1:89834510-89834529 | Msa0386080:CDS | 35.0% | |
| ATTGTCATGTCATTGAACCT+GGG | - | chr3_1:89834511-89834530 | Msa0386080:CDS | 35.0% | |
| !! | GGTGTCACATTTTTCAAACA+TGG | + | chr3_1:89834544-89834563 | None:intergenic | 35.0% |
| CCATTGAAGATCTTTCTCAT+GGG | + | chr3_1:89834582-89834601 | None:intergenic | 35.0% | |
| TCCATTGAAGATCTTTCTCA+TGG | + | chr3_1:89834583-89834602 | None:intergenic | 35.0% | |
| ! | TCAAATCTTCTAGGAAGATC+TGG | + | chr3_1:89834708-89834727 | None:intergenic | 35.0% |
| TCTTCCTAGAAGATTTGAGT+TGG | - | chr3_1:89834710-89834729 | Msa0386080:intron | 35.0% | |
| !! | CTTATCAGCCTTGTTCAATT+GGG | + | chr3_1:89834739-89834758 | None:intergenic | 35.0% |
| !! | TCTTATCAGCCTTGTTCAAT+TGG | + | chr3_1:89834740-89834759 | None:intergenic | 35.0% |
| ATATCCAACAACAGGATCAT+TGG | + | chr3_1:89834775-89834794 | None:intergenic | 35.0% | |
| GAAAATTCAATCTGTCCCAC+AGG | - | chr3_1:89832146-89832165 | Msa0386080:CDS | 40.0% | |
| AATCAATGTGATGAGGGTCT+AGG | + | chr3_1:89832193-89832212 | None:intergenic | 40.0% | |
| AACAAGGTCCTTCAATTTCG+TGG | - | chr3_1:89832307-89832326 | Msa0386080:CDS | 40.0% | |
| TTGGGTACCTTCAATTACCA+AGG | + | chr3_1:89832924-89832943 | None:intergenic | 40.0% | |
| ACCCAAATACACCTGGTATT+TGG | - | chr3_1:89832938-89832957 | Msa0386080:intron | 40.0% | |
| GTCCAAATACCAGGTGTATT+TGG | + | chr3_1:89832943-89832962 | None:intergenic | 40.0% | |
| TGTTCTCTTGTCCAAATACC+AGG | + | chr3_1:89832952-89832971 | None:intergenic | 40.0% | |
| TGGTATTTGGACAAGAGAAC+AGG | - | chr3_1:89832951-89832970 | Msa0386080:intron | 40.0% | |
| TATTTGGACAAGAGAACAGG+TGG | - | chr3_1:89832954-89832973 | Msa0386080:intron | 40.0% | |
| TCATGAACAGCTCCAACAAT+GGG | + | chr3_1:89832991-89833010 | None:intergenic | 40.0% | |
| !! | CCGTATTGTTTCTAATGCAG+GGG | + | chr3_1:89833118-89833137 | None:intergenic | 40.0% |
| CCCCTGCATTAGAAACAATA+CGG | - | chr3_1:89833115-89833134 | Msa0386080:CDS | 40.0% | |
| !! | CCCGTATTGTTTCTAATGCA+GGG | + | chr3_1:89833119-89833138 | None:intergenic | 40.0% |
| CCCTGCATTAGAAACAATAC+GGG | - | chr3_1:89833116-89833135 | Msa0386080:CDS | 40.0% | |
| GTCAGATTTCGCTTATCATG+TGG | - | chr3_1:89833267-89833286 | Msa0386080:intron | 40.0% | |
| CCCAATCTCAAGCACAAATA+AGG | - | chr3_1:89833784-89833803 | Msa0386080:intron | 40.0% | |
| !! | GCCTTATTTGTGCTTGAGAT+TGG | + | chr3_1:89833788-89833807 | None:intergenic | 40.0% |
| ! | ACCTGCTTCTATGGCATTTT+TGG | + | chr3_1:89833906-89833925 | None:intergenic | 40.0% |
| TTTGATGGAGTGGAGATACA+TGG | - | chr3_1:89834237-89834256 | Msa0386080:intron | 40.0% | |
| TGTCGTTCACTTTGTCCTTT+AGG | + | chr3_1:89834290-89834309 | None:intergenic | 40.0% | |
| AACGACAGAGATGATGAGTA+TGG | - | chr3_1:89834303-89834322 | Msa0386080:intron | 40.0% | |
| ACAGAGATGATGAGTATGGT+GGG | - | chr3_1:89834307-89834326 | Msa0386080:intron | 40.0% | |
| TGTAGATGCCTAAAGCATGA+GGG | + | chr3_1:89834458-89834477 | None:intergenic | 40.0% | |
| ATGTAGATGCCTAAAGCATG+AGG | + | chr3_1:89834459-89834478 | None:intergenic | 40.0% | |
| ! | TCATGCTTTAGGCATCTACA+TGG | - | chr3_1:89834458-89834477 | Msa0386080:intron | 40.0% |
| GATCTTTCTCATGGGCATTA+AGG | + | chr3_1:89834574-89834593 | None:intergenic | 40.0% | |
| CCCATGAGAAAGATCTTCAA+TGG | - | chr3_1:89834579-89834598 | Msa0386080:CDS | 40.0% | |
| GGAACATTTATTGTTGCTGG+TGG | - | chr3_1:89834600-89834619 | Msa0386080:CDS | 40.0% | |
| ! | TTGTTGCTGGTGGATACAAT+AGG | - | chr3_1:89834610-89834629 | Msa0386080:intron | 40.0% |
| GACTGAAGGAAACAATGTGT+TGG | - | chr3_1:89834632-89834651 | Msa0386080:intron | 40.0% | |
| ! | AGCTTATGGAAGGCTCTTTT+TGG | - | chr3_1:89834677-89834696 | Msa0386080:intron | 40.0% |
| GCATCCAACTCAAATCTTCT+AGG | + | chr3_1:89834717-89834736 | None:intergenic | 40.0% | |
| TACACCAATGATCCTGTTGT+TGG | - | chr3_1:89834768-89834787 | Msa0386080:CDS | 40.0% | |
| ATGTTGTATGGGGTGAGAAG+GGG | + | chr3_1:89832124-89832143 | None:intergenic | 45.0% | |
| CATGTTGTATGGGGTGAGAA+GGG | + | chr3_1:89832125-89832144 | None:intergenic | 45.0% | |
| CTTCTCACCCCATACAACAT+GGG | - | chr3_1:89832124-89832143 | Msa0386080:CDS | 45.0% | |
| TGGTTGAGCCACGAAATTGA+AGG | + | chr3_1:89832318-89832337 | None:intergenic | 45.0% | |
| TCTCAACGAACAACAAAGGG+TGG | - | chr3_1:89832356-89832375 | Msa0386080:CDS | 45.0% | |
| ACAAAGGGTGGCTTCTTGAT+TGG | - | chr3_1:89832368-89832387 | Msa0386080:CDS | 45.0% | |
| CAAAGGGTGGCTTCTTGATT+GGG | - | chr3_1:89832369-89832388 | Msa0386080:CDS | 45.0% | |
| AAAGGGTGGCTTCTTGATTG+GGG | - | chr3_1:89832370-89832389 | Msa0386080:CDS | 45.0% | |
| !! | TGAAGGTACCCAAATACACC+TGG | - | chr3_1:89832931-89832950 | Msa0386080:intron | 45.0% |
| GAAGCATGGAAACCCATTGT+TGG | - | chr3_1:89832976-89832995 | Msa0386080:intron | 45.0% | |
| CTCATGAACAGCTCCAACAA+TGG | + | chr3_1:89832992-89833011 | None:intergenic | 45.0% | |
| GTTGGAGCTGTTCATGAGAA+AGG | - | chr3_1:89832994-89833013 | Msa0386080:CDS | 45.0% | |
| ! | TTTTGTCAACTTTGGCACGC+TGG | - | chr3_1:89833027-89833046 | Msa0386080:CDS | 45.0% |
| GAGTGTCCAACTATGGTATC+TGG | - | chr3_1:89833052-89833071 | Msa0386080:CDS | 45.0% | |
| !! | GCCCGTATTGTTTCTAATGC+AGG | + | chr3_1:89833120-89833139 | None:intergenic | 45.0% |
| TGAACAGGTTACCAACCAGA+TGG | - | chr3_1:89833755-89833774 | Msa0386080:intron | 45.0% | |
| GCCAAAAATGCCATAGAAGC+AGG | - | chr3_1:89833902-89833921 | Msa0386080:CDS | 45.0% | |
| GTGGAGATACATGGAGCTAA+TGG | - | chr3_1:89834246-89834265 | Msa0386080:intron | 45.0% | |
| GACAGAGATGATGAGTATGG+TGG | - | chr3_1:89834306-89834325 | Msa0386080:intron | 45.0% | |
| CTGCTTTCACAACCTCTAGA+GGG | + | chr3_1:89834356-89834375 | None:intergenic | 45.0% | |
| ACTGCTTTCACAACCTCTAG+AGG | + | chr3_1:89834357-89834376 | None:intergenic | 45.0% | |
| GAGATTGGAGCTGACAAAGT+TGG | - | chr3_1:89834384-89834403 | Msa0386080:intron | 45.0% | |
| GACTCTAACCCTCATGCTTT+AGG | - | chr3_1:89834447-89834466 | Msa0386080:intron | 45.0% | |
| CATGGGCATTAAGGACTCAT+TGG | + | chr3_1:89834565-89834584 | None:intergenic | 45.0% | |
| GGTGGATACAATAGGACTGA+AGG | - | chr3_1:89834618-89834637 | Msa0386080:intron | 45.0% | |
| ! | AACAATGTGTTGGCCAGCAA+TGG | - | chr3_1:89834642-89834661 | Msa0386080:intron | 45.0% |
| ! | CGGATTTGGTAGCTTATGGA+AGG | - | chr3_1:89834667-89834686 | Msa0386080:intron | 45.0% |
| GTTGGATGCCCAATTGAACA+AGG | - | chr3_1:89834728-89834747 | Msa0386080:intron | 45.0% | |
| CCATGTTGTATGGGGTGAGA+AGG | + | chr3_1:89832126-89832145 | None:intergenic | 50.0% | |
| CCTTCTCACCCCATACAACA+TGG | - | chr3_1:89832123-89832142 | Msa0386080:CDS | 50.0% | |
| TTCTTGATTGGGGAAGCCTC+AGG | - | chr3_1:89832380-89832399 | Msa0386080:CDS | 50.0% | |
| TCTTGATTGGGGAAGCCTCA+GGG | - | chr3_1:89832381-89832400 | Msa0386080:CDS | 50.0% | |
| CAAGAGAACAGGTGGAAGCA+TGG | - | chr3_1:89832962-89832981 | Msa0386080:intron | 50.0% | |
| GGAGCTGTTCATGAGAAAGG+AGG | - | chr3_1:89832997-89833016 | Msa0386080:CDS | 50.0% | |
| !! | GCTGGAAGAGTGTCCAACTA+TGG | - | chr3_1:89833045-89833064 | Msa0386080:CDS | 50.0% |
| TCAAACATGGTGCACATCCC+AGG | + | chr3_1:89834531-89834550 | None:intergenic | 50.0% | |
| TACCAAATCCGCACCATTGC+TGG | + | chr3_1:89834658-89834677 | None:intergenic | 50.0% | |
| ! | GGTGCGGATTTGGTAGCTTA+TGG | - | chr3_1:89834663-89834682 | Msa0386080:intron | 50.0% |
| CTTGATTGGGGAAGCCTCAG+GGG | - | chr3_1:89832382-89832401 | Msa0386080:CDS | 55.0% | |
| GGGTCTCAGACACTGCACAA+GGG | - | chr3_1:89832402-89832421 | Msa0386080:CDS | 55.0% | |
| TTGTGAGACGTCGAGGAGGT+GGG | + | chr3_1:89833841-89833860 | None:intergenic | 55.0% | |
| ! | TCATCGGTTGTGAGACGTCG+AGG | + | chr3_1:89833848-89833867 | None:intergenic | 55.0% |
| ! | TCGTTGTCGCTTCCCTCTAG+AGG | - | chr3_1:89834341-89834360 | Msa0386080:intron | 55.0% |
| ! | TGTGTTGGCCAGCAATGGTG+CGG | - | chr3_1:89834647-89834666 | Msa0386080:intron | 55.0% |
| ! | TGCAGTGTCTGAGACCCCTG+AGG | + | chr3_1:89832399-89832418 | None:intergenic | 60.0% |
| GGGGTCTCAGACACTGCACA+AGG | - | chr3_1:89832401-89832420 | Msa0386080:CDS | 60.0% | |
| TTGGGGGCTGTCCATCTGGT+TGG | + | chr3_1:89833769-89833788 | None:intergenic | 60.0% | |
| GAGATTGGGGGCTGTCCATC+TGG | + | chr3_1:89833773-89833792 | None:intergenic | 60.0% | |
| GTTGTGAGACGTCGAGGAGG+TGG | + | chr3_1:89833842-89833861 | None:intergenic | 60.0% | |
| TCGGTTGTGAGACGTCGAGG+AGG | + | chr3_1:89833845-89833864 | None:intergenic | 60.0% | |
| GGCCAGCAATGGTGCGGATT+TGG | - | chr3_1:89834653-89834672 | Msa0386080:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 89832076 | 89834830 | 89832076 | ID=Msa0386080;Name=Msa0386080 |
| chr3_1 | mRNA | 89832076 | 89834830 | 89832076 | ID=Msa0386080-mRNA-1;Parent=Msa0386080;Name=Msa0386080-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|5|0|373 |
| chr3_1 | exon | 89834739 | 89834830 | 89834739 | ID=Msa0386080-mRNA-1:exon:24658;Parent=Msa0386080-mRNA-1 |
| chr3_1 | exon | 89834483 | 89834623 | 89834483 | ID=Msa0386080-mRNA-1:exon:24657;Parent=Msa0386080-mRNA-1 |
| chr3_1 | exon | 89833840 | 89833970 | 89833840 | ID=Msa0386080-mRNA-1:exon:24656;Parent=Msa0386080-mRNA-1 |
| chr3_1 | exon | 89832983 | 89833144 | 89832983 | ID=Msa0386080-mRNA-1:exon:24655;Parent=Msa0386080-mRNA-1 |
| chr3_1 | exon | 89832076 | 89832671 | 89832076 | ID=Msa0386080-mRNA-1:exon:24654;Parent=Msa0386080-mRNA-1 |
| chr3_1 | CDS | 89834739 | 89834830 | 89834739 | ID=Msa0386080-mRNA-1:cds;Parent=Msa0386080-mRNA-1 |
| chr3_1 | CDS | 89834483 | 89834623 | 89834483 | ID=Msa0386080-mRNA-1:cds;Parent=Msa0386080-mRNA-1 |
| chr3_1 | CDS | 89833840 | 89833970 | 89833840 | ID=Msa0386080-mRNA-1:cds;Parent=Msa0386080-mRNA-1 |
| chr3_1 | CDS | 89832983 | 89833144 | 89832983 | ID=Msa0386080-mRNA-1:cds;Parent=Msa0386080-mRNA-1 |
| chr3_1 | CDS | 89832076 | 89832671 | 89832076 | ID=Msa0386080-mRNA-1:cds;Parent=Msa0386080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
