Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0186270 | XP_013462297.1 | 96.703 | 364 | 11 | 1 | 10 | 372 | 3 | 366 | 0.0 | 735 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0186270 | sp|Q8LAH7|OPR1_ARATH | 68.579 | 366 | 110 | 1 | 10 | 370 | 5 | 370 | 0.0 | 535 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0186270 | A0A072V3D1 | 96.703 | 364 | 11 | 1 | 10 | 372 | 3 | 366 | 0.0 | 735 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0017710 | Msa0186270 | 0.806674 | 7.335379e-50 | -8.615850e-47 |
Msa0025570 | Msa0186270 | 0.826399 | 2.771140e-54 | -8.615850e-47 |
Msa0073110 | Msa0186270 | 0.812076 | 5.086368e-51 | -8.615850e-47 |
Msa0121320 | Msa0186270 | 0.829214 | 5.834798e-55 | -8.615850e-47 |
Msa0136090 | Msa0186270 | 0.826101 | 3.262479e-54 | -8.615850e-47 |
Msa0140870 | Msa0186270 | -0.814155 | 1.779230e-51 | -8.615850e-47 |
Msa0166180 | Msa0186270 | 0.823680 | 1.215764e-53 | -8.615850e-47 |
Msa0186270 | Msa0211460 | 0.800092 | 1.695256e-48 | -8.615850e-47 |
Msa0186270 | Msa0244310 | 0.801595 | 8.361175e-49 | -8.615850e-47 |
Msa0186270 | Msa0282830 | 0.804277 | 2.334066e-49 | -8.615850e-47 |
Msa0186270 | Msa0307630 | 0.811755 | 5.974935e-51 | -8.615850e-47 |
Msa0186270 | Msa0336520 | 0.814196 | 1.742403e-51 | -8.615850e-47 |
Msa0186270 | Msa0354600 | 0.802067 | 6.687654e-49 | -8.615850e-47 |
Msa0186270 | Msa0386080 | 0.823775 | 1.155090e-53 | -8.615850e-47 |
Msa0186270 | Msa0387340 | 0.918483 | 1.474880e-86 | -8.615850e-47 |
Msa0186270 | Msa0430040 | -0.815903 | 7.280714e-52 | -8.615850e-47 |
Msa0186270 | Msa0433090 | 0.805810 | 1.115495e-49 | -8.615850e-47 |
Msa0186270 | Msa0524710 | 0.809493 | 1.841211e-50 | -8.615850e-47 |
Msa0186270 | Msa0530660 | 0.800972 | 1.121465e-48 | -8.615850e-47 |
Msa0186270 | Msa0567330 | 0.809272 | 2.053398e-50 | -8.615850e-47 |
Msa0186270 | Msa0567570 | 0.819619 | 1.056031e-52 | -8.615850e-47 |
Msa0186270 | Msa0576320 | 0.808326 | 3.272385e-50 | -8.615850e-47 |
Msa0186270 | Msa0587180 | 0.804679 | 1.923775e-49 | -8.615850e-47 |
Msa0186270 | Msa0626980 | 0.807518 | 4.859900e-50 | -8.615850e-47 |
Msa0186270 | Msa0627360 | 0.808702 | 2.720041e-50 | -8.615850e-47 |
Msa0186270 | Msa0659230 | 0.802133 | 6.481728e-49 | -8.615850e-47 |
Msa0186270 | Msa0661670 | 0.956859 | 1.087583e-114 | -8.615850e-47 |
Msa0186270 | Msa0673940 | 0.806114 | 9.623692e-50 | -8.615850e-47 |
Msa0186270 | Msa0708020 | 0.801444 | 8.978651e-49 | -8.615850e-47 |
Msa0186270 | Msa0732970 | 0.807569 | 4.740884e-50 | -8.615850e-47 |
Msa0186270 | Msa0773960 | 0.803350 | 3.635907e-49 | -8.615850e-47 |
Msa0186270 | Msa0792410 | 0.812941 | 3.289628e-51 | -8.615850e-47 |
Msa0186270 | Msa0804170 | 0.804361 | 2.241084e-49 | -8.615850e-47 |
Msa0186270 | Msa0871420 | 0.823629 | 1.249438e-53 | -8.615850e-47 |
Msa0186270 | Msa0936630 | 0.812843 | 3.456545e-51 | -8.615850e-47 |
Msa0186270 | Msa1040330 | 0.832225 | 1.067315e-55 | -8.615850e-47 |
Msa0186270 | Msa1085560 | 0.802767 | 4.798211e-49 | -8.615850e-47 |
Msa0186270 | Msa1085820 | 0.801156 | 1.028245e-48 | -8.615850e-47 |
Msa0186270 | Msa1165860 | 0.805566 | 1.254590e-49 | -8.615850e-47 |
Msa0186270 | Msa1173540 | 0.917690 | 3.901892e-86 | -8.615850e-47 |
Msa0186270 | Msa1220720 | 0.827333 | 1.658131e-54 | -8.615850e-47 |
Msa0186270 | Msa1223540 | 0.800065 | 1.716142e-48 | -8.615850e-47 |
Msa0186270 | Msa1223620 | 0.801782 | 7.655385e-49 | -8.615850e-47 |
Msa0186270 | Msa1223990 | 0.805432 | 1.338729e-49 | -8.615850e-47 |
Msa0186270 | Msa1263520 | 0.804548 | 2.048901e-49 | -8.615850e-47 |
Msa0186270 | Msa1265570 | 0.832888 | 7.308186e-56 | -8.615850e-47 |
Msa0186270 | Msa1273320 | 0.807355 | 5.264034e-50 | -8.615850e-47 |
Msa0186270 | Msa1321010 | 0.800820 | 1.204313e-48 | -8.615850e-47 |
Msa0186270 | Msa1334670 | 0.833655 | 4.708850e-56 | -8.615850e-47 |
Msa0186270 | Msa1344450 | 0.800609 | 1.330314e-48 | -8.615850e-47 |
Msa0186270 | Msa1362590 | 0.806253 | 9.000541e-50 | -8.615850e-47 |
Msa0186270 | Msa1364690 | 0.803201 | 3.903260e-49 | -8.615850e-47 |
Msa0186270 | Msa1365230 | 0.830441 | 2.932077e-55 | -8.615850e-47 |
Msa0186270 | Msa1407810 | 0.815428 | 9.290586e-52 | -8.615850e-47 |
Msa0186270 | Msa1413020 | 0.807751 | 4.338361e-50 | -8.615850e-47 |
Msa0186270 | Msa1433360 | 0.806750 | 7.067847e-50 | -8.615850e-47 |
Msa0186270 | Msa1434700 | 0.803657 | 3.140306e-49 | -8.615850e-47 |
Msa0186270 | Msa1437590 | 0.809328 | 1.997592e-50 | -8.615850e-47 |
Msa0186270 | Msa1437780 | 0.816434 | 5.541095e-52 | -8.615850e-47 |
Msa0186270 | Msa1462610 | 0.810669 | 1.027296e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0186270 | MtrunA17_Chr3g0144001 | 96.703 | 364 | 11 | 1 | 10 | 372 | 3 | 366 | 0.0 | 735 |
Msa0186270 | MtrunA17_Chr5g0394891 | 70.219 | 366 | 104 | 1 | 9 | 369 | 4 | 369 | 0.0 | 554 |
Msa0186270 | MtrunA17_Chr5g0394771 | 70.704 | 355 | 103 | 1 | 15 | 369 | 38 | 391 | 0.0 | 543 |
Msa0186270 | MtrunA17_Chr5g0394861 | 69.337 | 362 | 104 | 2 | 15 | 369 | 10 | 371 | 0.0 | 532 |
Msa0186270 | MtrunA17_Chr5g0395841 | 67.409 | 359 | 112 | 1 | 15 | 368 | 12 | 370 | 0.0 | 530 |
Msa0186270 | MtrunA17_Chr5g0394751 | 69.296 | 355 | 108 | 1 | 15 | 369 | 6 | 359 | 0.0 | 529 |
Msa0186270 | MtrunA17_Chr5g0394841 | 67.403 | 362 | 111 | 2 | 15 | 369 | 10 | 371 | 0.0 | 524 |
Msa0186270 | MtrunA17_Chr5g0394811 | 66.111 | 360 | 117 | 2 | 15 | 369 | 119 | 478 | 0.0 | 513 |
Msa0186270 | MtrunA17_Chr5g0394811 | 79.208 | 101 | 21 | 0 | 23 | 123 | 1 | 101 | 8.13e-51 | 176 |
Msa0186270 | MtrunA17_Chr4g0070561 | 53.243 | 370 | 155 | 5 | 17 | 368 | 19 | 388 | 4.10e-137 | 396 |
Msa0186270 | MtrunA17_Chr5g0394791 | 64.072 | 167 | 49 | 2 | 15 | 176 | 9 | 169 | 7.36e-71 | 220 |
Msa0186270 | MtrunA17_Chr5g0394801 | 53.723 | 188 | 60 | 1 | 174 | 361 | 25 | 185 | 1.46e-65 | 208 |
Msa0186270 | MtrunA17_Chr3g0130471 | 72.093 | 43 | 12 | 0 | 194 | 236 | 1 | 43 | 4.88e-15 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0186270 | AT1G76680.1 | 68.579 | 366 | 110 | 1 | 10 | 370 | 5 | 370 | 0.0 | 535 |
Msa0186270 | AT1G76690.1 | 67.486 | 366 | 114 | 1 | 10 | 370 | 7 | 372 | 0.0 | 533 |
Msa0186270 | AT1G76680.2 | 64.194 | 391 | 110 | 2 | 10 | 370 | 5 | 395 | 0.0 | 520 |
Msa0186270 | AT1G09400.1 | 65.846 | 325 | 110 | 1 | 23 | 347 | 1 | 324 | 1.75e-163 | 461 |
Msa0186270 | AT2G06050.2 | 52.406 | 374 | 156 | 4 | 17 | 368 | 12 | 385 | 1.18e-136 | 395 |
Msa0186270 | AT2G06050.1 | 52.406 | 374 | 156 | 4 | 17 | 368 | 12 | 385 | 1.18e-136 | 395 |
Msa0186270 | AT2G06050.3 | 52.406 | 374 | 156 | 4 | 17 | 368 | 12 | 385 | 1.18e-136 | 395 |
Msa0186270 | AT1G09400.2 | 66.792 | 265 | 87 | 1 | 83 | 347 | 2 | 265 | 3.86e-133 | 381 |
Msa0186270 | AT1G17990.1 | 65.251 | 259 | 88 | 2 | 9 | 266 | 1 | 258 | 2.85e-128 | 369 |
Msa0186270 | AT1G18020.1 | 65.251 | 259 | 88 | 2 | 9 | 266 | 1 | 258 | 2.85e-128 | 369 |
Msa0186270 | AT1G17990.2 | 62.548 | 259 | 87 | 3 | 9 | 266 | 1 | 250 | 1.36e-119 | 347 |
Find 100 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCCAAATACCAGGTGTATT+TGG | 0.127154 | 2_1:-961838 | None:intergenic |
CTGAAGTCATTGACAACTTT+TGG | 0.134544 | 2_1:-962770 | None:intergenic |
AAGGACCTTGTTCTTGTTAA+AGG | 0.178211 | 2_1:-961231 | None:intergenic |
TGTCGTTCACTTTGTCCTTT+AGG | 0.228951 | 2_1:-963202 | None:intergenic |
ACCCAAATACACCTGGTATT+TGG | 0.251049 | 2_1:+961836 | Msa0186270:CDS |
GATCTTTCTCATGGGCATTA+AGG | 0.258096 | 2_1:-963486 | None:intergenic |
CTAATAATTACCTGCTTCTA+TGG | 0.268887 | 2_1:-962810 | None:intergenic |
CCATCCAACTCAAATCTTCT+AGG | 0.299535 | 2_1:-963629 | None:intergenic |
TTCTTGATTGGGGAAGCCTC+AGG | 0.303380 | 2_1:+961315 | Msa0186270:CDS |
TCCAATCTCAAGCACAAATA+AGG | 0.308704 | 2_1:+962682 | Msa0186270:CDS |
GGTGCGGATTTGGTAGCTTA+TGG | 0.322401 | 2_1:+963578 | Msa0186270:CDS |
TACCAAATCCGCACCATTGC+TGG | 0.328132 | 2_1:-963570 | None:intergenic |
CAAAGGGTGGCTTCTTGATT+GGG | 0.332102 | 2_1:+961304 | Msa0186270:CDS |
ACAAAGGGTGGCTTCTTGAT+TGG | 0.332916 | 2_1:+961303 | Msa0186270:CDS |
AATGGAACATTTATTGTTGC+TGG | 0.345581 | 2_1:+963512 | Msa0186270:CDS |
TCCAAATACCAGGTGTATTT+GGG | 0.345635 | 2_1:-961837 | None:intergenic |
TCTTATCAGCCTTGTTCAAT+TGG | 0.354556 | 2_1:-963652 | None:intergenic |
GCTAAGTCATTAAGTGAATT+AGG | 0.356165 | 2_1:+963395 | Msa0186270:CDS |
GCCTTATTTGTGCTTGAGAT+TGG | 0.359941 | 2_1:-962683 | None:intergenic |
GGCCAGCAATGGTGCGGATT+TGG | 0.384528 | 2_1:+963568 | Msa0186270:CDS |
TACACCAATGATCCTGTTGT+TGG | 0.393076 | 2_1:+963683 | Msa0186270:CDS |
GAGATTGGAGGCTGTCCATC+TGG | 0.397247 | 2_1:-962668 | None:intergenic |
TCAAATCTTCTAGGAAGATC+TGG | 0.403955 | 2_1:-963620 | None:intergenic |
GACTCTAACCCTCATGCTTT+AGG | 0.410599 | 2_1:+963362 | Msa0186270:CDS |
TTGTTGCTGGTGGATACAAT+AGG | 0.419806 | 2_1:+963525 | Msa0186270:CDS |
CATGGGCATTAAGGACTCAT+TGG | 0.438978 | 2_1:-963477 | None:intergenic |
GTGGAGATACATGGAGCTAA+TGG | 0.442093 | 2_1:+963161 | Msa0186270:CDS |
AAAGCAGTTGTTGATGAGAT+TGG | 0.442364 | 2_1:+963284 | Msa0186270:CDS |
TCTTGATTGGGGAAGCCTCA+GGG | 0.444023 | 2_1:+961316 | Msa0186270:CDS |
GAGAATAAGAAAGTGGTTGA+AGG | 0.446077 | 2_1:+961018 | Msa0186270:CDS |
CCATGTTGTATGGGGTGAGA+AGG | 0.460955 | 2_1:-961056 | None:intergenic |
ATATCCAACAACAGGATCAT+TGG | 0.464074 | 2_1:-963687 | None:intergenic |
TTATTTGTGCTTGAGATTGG+AGG | 0.468685 | 2_1:-962680 | None:intergenic |
GCTGGAAGAGTGTCCAACTA+TGG | 0.469322 | 2_1:+961943 | Msa0186270:CDS |
GTTGGAGCTGTTCATGAGAA+AGG | 0.473716 | 2_1:+961892 | Msa0186270:CDS |
TCATGAACAGCTCCAACAAT+GGG | 0.476202 | 2_1:-961886 | None:intergenic |
TCAAACATGGTGCACATCCC+AGG | 0.477008 | 2_1:-963443 | None:intergenic |
CTTGCTTGATCAATTCCTAA+AGG | 0.484914 | 2_1:+963187 | Msa0186270:CDS |
TATTCTCAACGAACAACAAA+GGG | 0.489010 | 2_1:+961288 | Msa0186270:CDS |
TATTGTCATGTCATTGAACC+TGG | 0.489334 | 2_1:+963425 | Msa0186270:CDS |
CTCATGAACAGCTCCAACAA+TGG | 0.489730 | 2_1:-961887 | None:intergenic |
TCCATTGAAGATCTTTCTCA+TGG | 0.490323 | 2_1:-963495 | None:intergenic |
CCCATGAGAAAGATCTTCAA+TGG | 0.491062 | 2_1:+963494 | Msa0186270:CDS |
GTTGTGAGACGTCGAGGAGG+TGG | 0.497052 | 2_1:-962737 | None:intergenic |
CATGTTGTATGGGGTGAGAA+GGG | 0.498945 | 2_1:-961055 | None:intergenic |
TAATCAGTATATCCAACAAC+AGG | 0.503211 | 2_1:-963695 | None:intergenic |
CCTAGAAGATTTGAGTTGGA+TGG | 0.507273 | 2_1:+963629 | Msa0186270:CDS |
CTAAAACCAGATACCATAGT+TGG | 0.509794 | 2_1:-961956 | None:intergenic |
GGAAGAAGAGAATAAGAAAG+TGG | 0.510295 | 2_1:+961011 | Msa0186270:CDS |
GAAGCATGGAAACCCATTGT+TGG | 0.513600 | 2_1:+961874 | Msa0186270:CDS |
TGGTATTTGGACAAGAGAAC+AGG | 0.514806 | 2_1:+961849 | Msa0186270:CDS |
TCTTCCTAGAAGATTTGAGT+TGG | 0.518058 | 2_1:+963625 | Msa0186270:CDS |
TTTGATGGAGTGGAGATACA+TGG | 0.518838 | 2_1:+963152 | Msa0186270:CDS |
CATTCACAATAATCAGCATA+AGG | 0.519406 | 2_1:-963335 | None:intergenic |
CCTTCTCACCCCATACAACA+TGG | 0.541714 | 2_1:+961056 | Msa0186270:CDS |
CTTGATTGGGGAAGCCTCAG+GGG | 0.545878 | 2_1:+961317 | Msa0186270:CDS |
CGGATTTGGTAGCTTATGGA+AGG | 0.547082 | 2_1:+963582 | Msa0186270:CDS |
AACGACAGAGATGATGAGTA+TGG | 0.548461 | 2_1:+963218 | Msa0186270:CDS |
CCATTGAAGATCTTTCTCAT+GGG | 0.558552 | 2_1:-963494 | None:intergenic |
GGAACATTTATTGTTGCTGG+TGG | 0.563883 | 2_1:+963515 | Msa0186270:CDS |
CAAGAGAACAGGTGGAAGCA+TGG | 0.564931 | 2_1:+961860 | Msa0186270:CDS |
TGTTCTCTTGTCCAAATACC+AGG | 0.570132 | 2_1:-961847 | None:intergenic |
GAAAATTCAATCTGTCCCAC+AGG | 0.576865 | 2_1:+961079 | Msa0186270:CDS |
AAAGGGTGGCTTCTTGATTG+GGG | 0.577699 | 2_1:+961305 | Msa0186270:CDS |
TCGTTGTCGCTTCCCTCTAG+AGG | 0.579003 | 2_1:+963256 | Msa0186270:CDS |
TTATTCTCAACGAACAACAA+AGG | 0.581092 | 2_1:+961287 | Msa0186270:CDS |
TATGCTGATTATTGTGAATG+TGG | 0.581554 | 2_1:+963338 | Msa0186270:CDS |
ACTGCTTTCACAACCTCTAG+AGG | 0.583197 | 2_1:-963269 | None:intergenic |
AACAATGTGTTGGCCAGCAA+TGG | 0.583715 | 2_1:+963557 | Msa0186270:CDS |
TGAACAGGTTACCAACCAGA+TGG | 0.587082 | 2_1:+962653 | Msa0186270:intron |
AGTTGTCAATGACTTCAGAA+TGG | 0.592608 | 2_1:+962775 | Msa0186270:CDS |
GGTGGATACAATAGGACTGA+AGG | 0.596483 | 2_1:+963533 | Msa0186270:CDS |
GGGGTCTCAGACACTGCACA+AGG | 0.597651 | 2_1:+961336 | Msa0186270:CDS |
TTGGAGGCTGTCCATCTGGT+TGG | 0.600157 | 2_1:-962664 | None:intergenic |
TTGTGAGACGTCGAGGAGGT+GGG | 0.604708 | 2_1:-962736 | None:intergenic |
TGGTTGAGCAACGAAATTGA+AGG | 0.607262 | 2_1:-961250 | None:intergenic |
GACTGAAGGAAACAATGTGT+TGG | 0.609986 | 2_1:+963547 | Msa0186270:CDS |
ACAGAGATGATGAGTATGGT+GGG | 0.612337 | 2_1:+963222 | Msa0186270:CDS |
ATGTAGATGCCTAAAGCATG+AGG | 0.612576 | 2_1:-963371 | None:intergenic |
TCATGCTTTAGGCATCTACA+TGG | 0.616635 | 2_1:+963373 | Msa0186270:CDS |
GAGATTGGAGCTGACAAAGT+TGG | 0.616749 | 2_1:+963299 | Msa0186270:CDS |
CTGCTTTCACAACCTCTAGA+GGG | 0.620027 | 2_1:-963268 | None:intergenic |
GACAGAGATGATGAGTATGG+TGG | 0.624080 | 2_1:+963221 | Msa0186270:CDS |
TCATCGGTTGTGAGACGTCG+AGG | 0.630333 | 2_1:-962743 | None:intergenic |
GTTGGATGGCCAATTGAACA+AGG | 0.634338 | 2_1:+963643 | Msa0186270:CDS |
ATGTTGTATGGGGTGAGAAG+GGG | 0.635447 | 2_1:-961054 | None:intergenic |
ATTGTCATGTCATTGAACCT+GGG | 0.637262 | 2_1:+963426 | Msa0186270:CDS |
TTGCACCTTTAACAAGAACA+AGG | 0.637602 | 2_1:+961226 | Msa0186270:CDS |
TCTCAACGAACAACAAAGGG+TGG | 0.642936 | 2_1:+961291 | Msa0186270:CDS |
AATAAGGCACTACAAAAGCA+AGG | 0.645729 | 2_1:+962698 | Msa0186270:CDS |
TGAAGGTACCCAAATACACC+TGG | 0.648170 | 2_1:+961829 | Msa0186270:intron |
TGCAGTGTCTGAGACCCCTG+AGG | 0.651692 | 2_1:-961331 | None:intergenic |
TATTTGGACAAGAGAACAGG+TGG | 0.653872 | 2_1:+961852 | Msa0186270:CDS |
CTTCTCACCCCATACAACAT+GGG | 0.659177 | 2_1:+961057 | Msa0186270:CDS |
GGAGCTGTTCATGAGAAAGG+AGG | 0.677401 | 2_1:+961895 | Msa0186270:CDS |
TGTAGATGCCTAAAGCATGA+GGG | 0.695124 | 2_1:-963370 | None:intergenic |
TGTGTTGGCCAGCAATGGTG+CGG | 0.698432 | 2_1:+963562 | Msa0186270:CDS |
GAATAATAAAGAGCAGCATG+TGG | 0.702052 | 2_1:-961270 | None:intergenic |
TCGGTTGTGAGACGTCGAGG+AGG | 0.709608 | 2_1:-962740 | None:intergenic |
GGGTCTCAGACACTGCACAA+GGG | 0.738404 | 2_1:+961337 | Msa0186270:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAGATTTTTTTAAAACTAAT+GGG | - | chr2_1:962062-962081 | None:intergenic | 10.0% |
!!! | AAAGATTTTTTTAAAACTAA+TGG | - | chr2_1:962063-962082 | None:intergenic | 10.0% |
!!! | ATTAGTTTTAAAAAAATCTT+TGG | + | chr2_1:962062-962081 | Msa0186270:intron | 10.0% |
!!! | TTAGTTTTAAAAAAATCTTT+GGG | + | chr2_1:962063-962082 | Msa0186270:intron | 10.0% |
!!! | TTACTTTTTAAAAAATCTTT+GGG | - | chr2_1:962323-962342 | None:intergenic | 10.0% |
!!! | ATTACTTTTTAAAAAATCTT+TGG | - | chr2_1:962324-962343 | None:intergenic | 10.0% |
!!! | AAAGATTTTTTAAAAAGTAA+TGG | + | chr2_1:962323-962342 | Msa0186270:intron | 10.0% |
!!! | AAGATTTTTTAAAAAGTAAT+GGG | + | chr2_1:962324-962343 | Msa0186270:intron | 10.0% |
!! | TATAAAACTAAAATAAATAC+AGG | + | chr2_1:963128-963147 | Msa0186270:intron | 10.0% |
!! | TAAATAAATTATTTACCTGT+GGG | - | chr2_1:961097-961116 | None:intergenic | 15.0% |
!!! | AAATAACAACTCTATTTTTT+TGG | + | chr2_1:961429-961448 | Msa0186270:intron | 15.0% |
!!! | AATAACAACTCTATTTTTTT+GGG | + | chr2_1:961430-961449 | Msa0186270:intron | 15.0% |
!!! | ATTGTAAAAATGTTTTTTGT+AGG | - | chr2_1:961506-961525 | None:intergenic | 15.0% |
!!! | TACAAAAAACATTTTTACAA+TGG | + | chr2_1:961505-961524 | Msa0186270:intron | 15.0% |
!!! | TGTGTTTTATTACATTAAAA+TGG | + | chr2_1:962424-962443 | Msa0186270:intron | 15.0% |
!!! | GTGTTTTATTACATTAAAAT+GGG | + | chr2_1:962425-962444 | Msa0186270:intron | 15.0% |
!! | TTCTTAGATAAAATAATTCT+TGG | + | chr2_1:962548-962567 | Msa0186270:intron | 15.0% |
!! | TGCAATATCAATTTATTATT+TGG | + | chr2_1:962833-962852 | Msa0186270:intron | 15.0% |
!! | CTAAATAAATTATTTACCTG+TGG | - | chr2_1:961098-961117 | None:intergenic | 20.0% |
!! | ACAAATTTGATTGTTAACAT+TGG | - | chr2_1:961666-961685 | None:intergenic | 20.0% |
!! | ACAATGAATAGTTACAATAT+AGG | - | chr2_1:961730-961749 | None:intergenic | 20.0% |
!! | TATTAAAAGACGAATTGTTT+AGG | + | chr2_1:962106-962125 | Msa0186270:intron | 20.0% |
!! | ACTAAACAATTTACTTCAAA+TGG | + | chr2_1:962499-962518 | Msa0186270:intron | 20.0% |
!! | ATAAAATTGTAATATCATGC+AGG | + | chr2_1:962927-962946 | Msa0186270:intron | 20.0% |
!! | TAAAATTGTAATATCATGCA+GGG | + | chr2_1:962928-962947 | Msa0186270:intron | 20.0% |
!!! | AAAATAAATACAGGTTTTGA+TGG | + | chr2_1:963137-963156 | Msa0186270:intron | 20.0% |
!! | CCATCAAATAATCTAAAGTT+CGG | - | chr2_1:962191-962210 | None:intergenic | 25.0% |
! | TGGTTAATAAACTAAGAACT+CGG | + | chr2_1:962519-962538 | Msa0186270:intron | 25.0% |
! | AACGTTCTATCGATATATAT+AGG | - | chr2_1:962631-962650 | None:intergenic | 25.0% |
! | TGAATTTTCCCATGTTGTAT+GGG | - | chr2_1:961068-961087 | None:intergenic | 30.0% |
! | TTGAATTTTCCCATGTTGTA+TGG | - | chr2_1:961069-961088 | None:intergenic | 30.0% |
AGTTCAATTCAATGTGATGA+GGG | - | chr2_1:961132-961151 | None:intergenic | 30.0% | |
AAGTTCAATTCAATGTGATG+AGG | - | chr2_1:961133-961152 | None:intergenic | 30.0% | |
!! | TTTTGTGTGTGTGTCTTATT+AGG | + | chr2_1:961196-961215 | Msa0186270:intron | 30.0% |
TTATTCTCAACGAACAACAA+AGG | + | chr2_1:961287-961306 | Msa0186270:CDS | 30.0% | |
TATTCTCAACGAACAACAAA+GGG | + | chr2_1:961288-961307 | Msa0186270:CDS | 30.0% | |
TGAGCTTGAGAACAAAAATA+GGG | - | chr2_1:961374-961393 | None:intergenic | 30.0% | |
ATGAGCTTGAGAACAAAAAT+AGG | - | chr2_1:961375-961394 | None:intergenic | 30.0% | |
GTGTATATGTATGTAATGAC+TGG | + | chr2_1:961529-961548 | Msa0186270:intron | 30.0% | |
TTAGATCAAATGAGATGCAA+TGG | + | chr2_1:961629-961648 | Msa0186270:intron | 30.0% | |
!! | TCTCAATGTTTTTGAATCCT+TGG | + | chr2_1:961802-961821 | Msa0186270:intron | 30.0% |
! | TTTGAATCCTTGGTAATTGA+AGG | + | chr2_1:961812-961831 | Msa0186270:intron | 30.0% |
! | GCATATTCTTTTGTCAACTT+TGG | + | chr2_1:961917-961936 | Msa0186270:CDS | 30.0% |
GTTTATGTTATAATTTCCCC+TGG | + | chr2_1:961997-962016 | Msa0186270:intron | 30.0% | |
! | CGAATTGTTTAGGAGAATTT+TGG | + | chr2_1:962116-962135 | Msa0186270:intron | 30.0% |
AAAAACTGATGACACAAACA+AGG | - | chr2_1:962144-962163 | None:intergenic | 30.0% | |
CCGAACTTTAGATTATTTGA+TGG | + | chr2_1:962188-962207 | Msa0186270:intron | 30.0% | |
! | TGAAGTCATTGACAACTTTT+GGG | - | chr2_1:962772-962791 | None:intergenic | 30.0% |
CTAATAATTACCTGCTTCTA+TGG | - | chr2_1:962813-962832 | None:intergenic | 30.0% | |
CTCTAGTGTAATCTAATTAG+AGG | - | chr2_1:962964-962983 | None:intergenic | 30.0% | |
CATTCACAATAATCAGCATA+AGG | - | chr2_1:963338-963357 | None:intergenic | 30.0% | |
! | TATGCTGATTATTGTGAATG+TGG | + | chr2_1:963338-963357 | Msa0186270:CDS | 30.0% |
GCTAAGTCATTAAGTGAATT+AGG | + | chr2_1:963395-963414 | Msa0186270:CDS | 30.0% | |
AATGGAACATTTATTGTTGC+TGG | + | chr2_1:963512-963531 | Msa0186270:CDS | 30.0% | |
TAATCAGTATATCCAACAAC+AGG | - | chr2_1:963698-963717 | None:intergenic | 30.0% | |
!! | CTAGTAGCATTTTCAAGAAA+TGG | - | chr2_1:963722-963741 | None:intergenic | 30.0% |
GGAAGAAGAGAATAAGAAAG+TGG | + | chr2_1:961011-961030 | Msa0186270:CDS | 35.0% | |
GAGAATAAGAAAGTGGTTGA+AGG | + | chr2_1:961018-961037 | Msa0186270:CDS | 35.0% | |
! | GAATTTTCCCATGTTGTATG+GGG | - | chr2_1:961067-961086 | None:intergenic | 35.0% |
TTGCACCTTTAACAAGAACA+AGG | + | chr2_1:961226-961245 | Msa0186270:CDS | 35.0% | |
AAGGACCTTGTTCTTGTTAA+AGG | - | chr2_1:961234-961253 | None:intergenic | 35.0% | |
GAATAATAAAGAGCAGCATG+TGG | - | chr2_1:961273-961292 | None:intergenic | 35.0% | |
GAGAACAAAAATAGGGTAGT+TGG | - | chr2_1:961367-961386 | None:intergenic | 35.0% | |
TCCAAATACCAGGTGTATTT+GGG | - | chr2_1:961840-961859 | None:intergenic | 35.0% | |
CTAAAACCAGATACCATAGT+TGG | - | chr2_1:961959-961978 | None:intergenic | 35.0% | |
TACTTGCGTTAGACAATTCT+TGG | - | chr2_1:962243-962262 | None:intergenic | 35.0% | |
AGAATTGTCTAACGCAAGTA+AGG | + | chr2_1:962243-962262 | Msa0186270:intron | 35.0% | |
! | TCGATAGAACGTTTTTGAAC+AGG | + | chr2_1:962638-962657 | Msa0186270:intron | 35.0% |
TTATTTGTGCTTGAGATTGG+AGG | - | chr2_1:962683-962702 | None:intergenic | 35.0% | |
TCCAATCTCAAGCACAAATA+AGG | + | chr2_1:962682-962701 | Msa0186270:CDS | 35.0% | |
! | AATAAGGCACTACAAAAGCA+AGG | + | chr2_1:962698-962717 | Msa0186270:CDS | 35.0% |
!!! | GACAACTTTTGGGATTTCAT+CGG | - | chr2_1:962762-962781 | None:intergenic | 35.0% |
! | CTGAAGTCATTGACAACTTT+TGG | - | chr2_1:962773-962792 | None:intergenic | 35.0% |
AGTTGTCAATGACTTCAGAA+TGG | + | chr2_1:962775-962794 | Msa0186270:CDS | 35.0% | |
ACATCATTGCTATGTATGCA+GGG | - | chr2_1:962992-963011 | None:intergenic | 35.0% | |
!! | AAATACAGGTTTTGATGGAG+TGG | + | chr2_1:963142-963161 | Msa0186270:intron | 35.0% |
CTTGCTTGATCAATTCCTAA+AGG | + | chr2_1:963187-963206 | Msa0186270:CDS | 35.0% | |
! | AAAGCAGTTGTTGATGAGAT+TGG | + | chr2_1:963284-963303 | Msa0186270:CDS | 35.0% |
TATTGTCATGTCATTGAACC+TGG | + | chr2_1:963425-963444 | Msa0186270:CDS | 35.0% | |
ATTGTCATGTCATTGAACCT+GGG | + | chr2_1:963426-963445 | Msa0186270:CDS | 35.0% | |
!! | GGTGTCACATTTTTCAAACA+TGG | - | chr2_1:963459-963478 | None:intergenic | 35.0% |
CCATTGAAGATCTTTCTCAT+GGG | - | chr2_1:963497-963516 | None:intergenic | 35.0% | |
TCCATTGAAGATCTTTCTCA+TGG | - | chr2_1:963498-963517 | None:intergenic | 35.0% | |
! | TCAAATCTTCTAGGAAGATC+TGG | - | chr2_1:963623-963642 | None:intergenic | 35.0% |
TCTTCCTAGAAGATTTGAGT+TGG | + | chr2_1:963625-963644 | Msa0186270:CDS | 35.0% | |
!! | TCTTATCAGCCTTGTTCAAT+TGG | - | chr2_1:963655-963674 | None:intergenic | 35.0% |
ATATCCAACAACAGGATCAT+TGG | - | chr2_1:963690-963709 | None:intergenic | 35.0% | |
GAAAATTCAATCTGTCCCAC+AGG | + | chr2_1:961079-961098 | Msa0186270:CDS | 40.0% | |
ATTCAATGTGATGAGGGTCT+AGG | - | chr2_1:961126-961145 | None:intergenic | 40.0% | |
TGGTTGAGCAACGAAATTGA+AGG | - | chr2_1:961253-961272 | None:intergenic | 40.0% | |
TTGGGTACCTTCAATTACCA+AGG | - | chr2_1:961822-961841 | None:intergenic | 40.0% | |
ACCCAAATACACCTGGTATT+TGG | + | chr2_1:961836-961855 | Msa0186270:CDS | 40.0% | |
GTCCAAATACCAGGTGTATT+TGG | - | chr2_1:961841-961860 | None:intergenic | 40.0% | |
TGTTCTCTTGTCCAAATACC+AGG | - | chr2_1:961850-961869 | None:intergenic | 40.0% | |
TGGTATTTGGACAAGAGAAC+AGG | + | chr2_1:961849-961868 | Msa0186270:CDS | 40.0% | |
TATTTGGACAAGAGAACAGG+TGG | + | chr2_1:961852-961871 | Msa0186270:CDS | 40.0% | |
TCATGAACAGCTCCAACAAT+GGG | - | chr2_1:961889-961908 | None:intergenic | 40.0% | |
!! | CCGTATTGTTTCTAATCCAG+GGG | - | chr2_1:962016-962035 | None:intergenic | 40.0% |
! | CCCCTGGATTAGAAACAATA+CGG | + | chr2_1:962013-962032 | Msa0186270:intron | 40.0% |
!! | CCCGTATTGTTTCTAATCCA+GGG | - | chr2_1:962017-962036 | None:intergenic | 40.0% |
! | CCCTGGATTAGAAACAATAC+GGG | + | chr2_1:962014-962033 | Msa0186270:intron | 40.0% |
GTCAGATTTCGCTTATCATG+TGG | + | chr2_1:962165-962184 | Msa0186270:intron | 40.0% | |
!! | GCCTTATTTGTGCTTGAGAT+TGG | - | chr2_1:962686-962705 | None:intergenic | 40.0% |
! | ACCTGCTTCTATGGCATTTT+TGG | - | chr2_1:962804-962823 | None:intergenic | 40.0% |
CACATCATTGCTATGTATGC+AGG | - | chr2_1:962993-963012 | None:intergenic | 40.0% | |
TTTGATGGAGTGGAGATACA+TGG | + | chr2_1:963152-963171 | Msa0186270:CDS | 40.0% | |
TGTCGTTCACTTTGTCCTTT+AGG | - | chr2_1:963205-963224 | None:intergenic | 40.0% | |
AACGACAGAGATGATGAGTA+TGG | + | chr2_1:963218-963237 | Msa0186270:CDS | 40.0% | |
ACAGAGATGATGAGTATGGT+GGG | + | chr2_1:963222-963241 | Msa0186270:CDS | 40.0% | |
TGTAGATGCCTAAAGCATGA+GGG | - | chr2_1:963373-963392 | None:intergenic | 40.0% | |
ATGTAGATGCCTAAAGCATG+AGG | - | chr2_1:963374-963393 | None:intergenic | 40.0% | |
! | TCATGCTTTAGGCATCTACA+TGG | + | chr2_1:963373-963392 | Msa0186270:CDS | 40.0% |
GATCTTTCTCATGGGCATTA+AGG | - | chr2_1:963489-963508 | None:intergenic | 40.0% | |
CCCATGAGAAAGATCTTCAA+TGG | + | chr2_1:963494-963513 | Msa0186270:CDS | 40.0% | |
GGAACATTTATTGTTGCTGG+TGG | + | chr2_1:963515-963534 | Msa0186270:CDS | 40.0% | |
! | TTGTTGCTGGTGGATACAAT+AGG | + | chr2_1:963525-963544 | Msa0186270:CDS | 40.0% |
GACTGAAGGAAACAATGTGT+TGG | + | chr2_1:963547-963566 | Msa0186270:CDS | 40.0% | |
! | AGCTTATGGAAGGCTCTTTT+TGG | + | chr2_1:963592-963611 | Msa0186270:CDS | 40.0% |
CCATCCAACTCAAATCTTCT+AGG | - | chr2_1:963632-963651 | None:intergenic | 40.0% | |
!! | CCTAGAAGATTTGAGTTGGA+TGG | + | chr2_1:963629-963648 | Msa0186270:CDS | 40.0% |
TACACCAATGATCCTGTTGT+TGG | + | chr2_1:963683-963702 | Msa0186270:CDS | 40.0% | |
ATGTTGTATGGGGTGAGAAG+GGG | - | chr2_1:961057-961076 | None:intergenic | 45.0% | |
CATGTTGTATGGGGTGAGAA+GGG | - | chr2_1:961058-961077 | None:intergenic | 45.0% | |
CTTCTCACCCCATACAACAT+GGG | + | chr2_1:961057-961076 | Msa0186270:CDS | 45.0% | |
TCTCAACGAACAACAAAGGG+TGG | + | chr2_1:961291-961310 | Msa0186270:CDS | 45.0% | |
ACAAAGGGTGGCTTCTTGAT+TGG | + | chr2_1:961303-961322 | Msa0186270:CDS | 45.0% | |
CAAAGGGTGGCTTCTTGATT+GGG | + | chr2_1:961304-961323 | Msa0186270:CDS | 45.0% | |
AAAGGGTGGCTTCTTGATTG+GGG | + | chr2_1:961305-961324 | Msa0186270:CDS | 45.0% | |
!! | TGAAGGTACCCAAATACACC+TGG | + | chr2_1:961829-961848 | Msa0186270:intron | 45.0% |
GAAGCATGGAAACCCATTGT+TGG | + | chr2_1:961874-961893 | Msa0186270:CDS | 45.0% | |
CTCATGAACAGCTCCAACAA+TGG | - | chr2_1:961890-961909 | None:intergenic | 45.0% | |
GTTGGAGCTGTTCATGAGAA+AGG | + | chr2_1:961892-961911 | Msa0186270:CDS | 45.0% | |
! | TTTTGTCAACTTTGGCACGC+TGG | + | chr2_1:961925-961944 | Msa0186270:CDS | 45.0% |
GAGTGTCCAACTATGGTATC+TGG | + | chr2_1:961950-961969 | Msa0186270:intron | 45.0% | |
!! | GCCCGTATTGTTTCTAATCC+AGG | - | chr2_1:962018-962037 | None:intergenic | 45.0% |
TGAACAGGTTACCAACCAGA+TGG | + | chr2_1:962653-962672 | Msa0186270:intron | 45.0% | |
GCCAAAAATGCCATAGAAGC+AGG | + | chr2_1:962800-962819 | Msa0186270:CDS | 45.0% | |
GTGGAGATACATGGAGCTAA+TGG | + | chr2_1:963161-963180 | Msa0186270:CDS | 45.0% | |
GACAGAGATGATGAGTATGG+TGG | + | chr2_1:963221-963240 | Msa0186270:CDS | 45.0% | |
CTGCTTTCACAACCTCTAGA+GGG | - | chr2_1:963271-963290 | None:intergenic | 45.0% | |
ACTGCTTTCACAACCTCTAG+AGG | - | chr2_1:963272-963291 | None:intergenic | 45.0% | |
GAGATTGGAGCTGACAAAGT+TGG | + | chr2_1:963299-963318 | Msa0186270:CDS | 45.0% | |
GACTCTAACCCTCATGCTTT+AGG | + | chr2_1:963362-963381 | Msa0186270:CDS | 45.0% | |
CATGGGCATTAAGGACTCAT+TGG | - | chr2_1:963480-963499 | None:intergenic | 45.0% | |
GGTGGATACAATAGGACTGA+AGG | + | chr2_1:963533-963552 | Msa0186270:CDS | 45.0% | |
! | AACAATGTGTTGGCCAGCAA+TGG | + | chr2_1:963557-963576 | Msa0186270:CDS | 45.0% |
! | CGGATTTGGTAGCTTATGGA+AGG | + | chr2_1:963582-963601 | Msa0186270:CDS | 45.0% |
GTTGGATGGCCAATTGAACA+AGG | + | chr2_1:963643-963662 | Msa0186270:CDS | 45.0% | |
CCATGTTGTATGGGGTGAGA+AGG | - | chr2_1:961059-961078 | None:intergenic | 50.0% | |
CCTTCTCACCCCATACAACA+TGG | + | chr2_1:961056-961075 | Msa0186270:CDS | 50.0% | |
TTCTTGATTGGGGAAGCCTC+AGG | + | chr2_1:961315-961334 | Msa0186270:CDS | 50.0% | |
TCTTGATTGGGGAAGCCTCA+GGG | + | chr2_1:961316-961335 | Msa0186270:CDS | 50.0% | |
CAAGAGAACAGGTGGAAGCA+TGG | + | chr2_1:961860-961879 | Msa0186270:CDS | 50.0% | |
GGAGCTGTTCATGAGAAAGG+AGG | + | chr2_1:961895-961914 | Msa0186270:CDS | 50.0% | |
!! | GCTGGAAGAGTGTCCAACTA+TGG | + | chr2_1:961943-961962 | Msa0186270:CDS | 50.0% |
TCAAACATGGTGCACATCCC+AGG | - | chr2_1:963446-963465 | None:intergenic | 50.0% | |
TACCAAATCCGCACCATTGC+TGG | - | chr2_1:963573-963592 | None:intergenic | 50.0% | |
! | GGTGCGGATTTGGTAGCTTA+TGG | + | chr2_1:963578-963597 | Msa0186270:CDS | 50.0% |
CTTGATTGGGGAAGCCTCAG+GGG | + | chr2_1:961317-961336 | Msa0186270:CDS | 55.0% | |
GGGTCTCAGACACTGCACAA+GGG | + | chr2_1:961337-961356 | Msa0186270:CDS | 55.0% | |
TTGGAGGCTGTCCATCTGGT+TGG | - | chr2_1:962667-962686 | None:intergenic | 55.0% | |
GAGATTGGAGGCTGTCCATC+TGG | - | chr2_1:962671-962690 | None:intergenic | 55.0% | |
TTGTGAGACGTCGAGGAGGT+GGG | - | chr2_1:962739-962758 | None:intergenic | 55.0% | |
! | TCATCGGTTGTGAGACGTCG+AGG | - | chr2_1:962746-962765 | None:intergenic | 55.0% |
! | TCGTTGTCGCTTCCCTCTAG+AGG | + | chr2_1:963256-963275 | Msa0186270:CDS | 55.0% |
! | TGTGTTGGCCAGCAATGGTG+CGG | + | chr2_1:963562-963581 | Msa0186270:CDS | 55.0% |
! | TGCAGTGTCTGAGACCCCTG+AGG | - | chr2_1:961334-961353 | None:intergenic | 60.0% |
GGGGTCTCAGACACTGCACA+AGG | + | chr2_1:961336-961355 | Msa0186270:CDS | 60.0% | |
GTTGTGAGACGTCGAGGAGG+TGG | - | chr2_1:962740-962759 | None:intergenic | 60.0% | |
TCGGTTGTGAGACGTCGAGG+AGG | - | chr2_1:962743-962762 | None:intergenic | 60.0% | |
GGCCAGCAATGGTGCGGATT+TGG | + | chr2_1:963568-963587 | Msa0186270:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 961009 | 963745 | 961009 | ID=Msa0186270;Name=Msa0186270 |
chr2_1 | mRNA | 961009 | 963745 | 961009 | ID=Msa0186270-mRNA-1;Parent=Msa0186270;Name=Msa0186270-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|5|0|373 |
chr2_1 | exon | 961009 | 961100 | 961009 | ID=Msa0186270-mRNA-1:exon:237;Parent=Msa0186270-mRNA-1 |
chr2_1 | exon | 961218 | 961358 | 961218 | ID=Msa0186270-mRNA-1:exon:238;Parent=Msa0186270-mRNA-1 |
chr2_1 | exon | 961834 | 961964 | 961834 | ID=Msa0186270-mRNA-1:exon:239;Parent=Msa0186270-mRNA-1 |
chr2_1 | exon | 962660 | 962821 | 962660 | ID=Msa0186270-mRNA-1:exon:240;Parent=Msa0186270-mRNA-1 |
chr2_1 | exon | 963150 | 963745 | 963150 | ID=Msa0186270-mRNA-1:exon:241;Parent=Msa0186270-mRNA-1 |
chr2_1 | CDS | 961009 | 961100 | 961009 | ID=Msa0186270-mRNA-1:cds;Parent=Msa0186270-mRNA-1 |
chr2_1 | CDS | 961218 | 961358 | 961218 | ID=Msa0186270-mRNA-1:cds;Parent=Msa0186270-mRNA-1 |
chr2_1 | CDS | 961834 | 961964 | 961834 | ID=Msa0186270-mRNA-1:cds;Parent=Msa0186270-mRNA-1 |
chr2_1 | CDS | 962660 | 962821 | 962660 | ID=Msa0186270-mRNA-1:cds;Parent=Msa0186270-mRNA-1 |
chr2_1 | CDS | 963150 | 963745 | 963150 | ID=Msa0186270-mRNA-1:cds;Parent=Msa0186270-mRNA-1 |
Gene Sequence |
Protein sequence |