AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0186270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0186270 MtrunA17_Chr3g0144001 96.703 364 11 1 10 372 3 366 0.0 735
Msa0186270 MtrunA17_Chr5g0394891 70.219 366 104 1 9 369 4 369 0.0 554
Msa0186270 MtrunA17_Chr5g0394771 70.704 355 103 1 15 369 38 391 0.0 543
Msa0186270 MtrunA17_Chr5g0394861 69.337 362 104 2 15 369 10 371 0.0 532
Msa0186270 MtrunA17_Chr5g0395841 67.409 359 112 1 15 368 12 370 0.0 530
Msa0186270 MtrunA17_Chr5g0394751 69.296 355 108 1 15 369 6 359 0.0 529
Msa0186270 MtrunA17_Chr5g0394841 67.403 362 111 2 15 369 10 371 0.0 524
Msa0186270 MtrunA17_Chr5g0394811 66.111 360 117 2 15 369 119 478 0.0 513
Msa0186270 MtrunA17_Chr5g0394811 79.208 101 21 0 23 123 1 101 8.13e-51 176
Msa0186270 MtrunA17_Chr4g0070561 53.243 370 155 5 17 368 19 388 4.10e-137 396
Msa0186270 MtrunA17_Chr5g0394791 64.072 167 49 2 15 176 9 169 7.36e-71 220
Msa0186270 MtrunA17_Chr5g0394801 53.723 188 60 1 174 361 25 185 1.46e-65 208
Msa0186270 MtrunA17_Chr3g0130471 72.093 43 12 0 194 236 1 43 4.88e-15 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0186270 AT1G76680.1 68.579 366 110 1 10 370 5 370 0.0 535
Msa0186270 AT1G76690.1 67.486 366 114 1 10 370 7 372 0.0 533
Msa0186270 AT1G76680.2 64.194 391 110 2 10 370 5 395 0.0 520
Msa0186270 AT1G09400.1 65.846 325 110 1 23 347 1 324 1.75e-163 461
Msa0186270 AT2G06050.2 52.406 374 156 4 17 368 12 385 1.18e-136 395
Msa0186270 AT2G06050.1 52.406 374 156 4 17 368 12 385 1.18e-136 395
Msa0186270 AT2G06050.3 52.406 374 156 4 17 368 12 385 1.18e-136 395
Msa0186270 AT1G09400.2 66.792 265 87 1 83 347 2 265 3.86e-133 381
Msa0186270 AT1G17990.1 65.251 259 88 2 9 266 1 258 2.85e-128 369
Msa0186270 AT1G18020.1 65.251 259 88 2 9 266 1 258 2.85e-128 369
Msa0186270 AT1G17990.2 62.548 259 87 3 9 266 1 250 1.36e-119 347

Find 100 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCAAATACCAGGTGTATT+TGG 0.127154 2_1:-961838 None:intergenic
CTGAAGTCATTGACAACTTT+TGG 0.134544 2_1:-962770 None:intergenic
AAGGACCTTGTTCTTGTTAA+AGG 0.178211 2_1:-961231 None:intergenic
TGTCGTTCACTTTGTCCTTT+AGG 0.228951 2_1:-963202 None:intergenic
ACCCAAATACACCTGGTATT+TGG 0.251049 2_1:+961836 Msa0186270:CDS
GATCTTTCTCATGGGCATTA+AGG 0.258096 2_1:-963486 None:intergenic
CTAATAATTACCTGCTTCTA+TGG 0.268887 2_1:-962810 None:intergenic
CCATCCAACTCAAATCTTCT+AGG 0.299535 2_1:-963629 None:intergenic
TTCTTGATTGGGGAAGCCTC+AGG 0.303380 2_1:+961315 Msa0186270:CDS
TCCAATCTCAAGCACAAATA+AGG 0.308704 2_1:+962682 Msa0186270:CDS
GGTGCGGATTTGGTAGCTTA+TGG 0.322401 2_1:+963578 Msa0186270:CDS
TACCAAATCCGCACCATTGC+TGG 0.328132 2_1:-963570 None:intergenic
CAAAGGGTGGCTTCTTGATT+GGG 0.332102 2_1:+961304 Msa0186270:CDS
ACAAAGGGTGGCTTCTTGAT+TGG 0.332916 2_1:+961303 Msa0186270:CDS
AATGGAACATTTATTGTTGC+TGG 0.345581 2_1:+963512 Msa0186270:CDS
TCCAAATACCAGGTGTATTT+GGG 0.345635 2_1:-961837 None:intergenic
TCTTATCAGCCTTGTTCAAT+TGG 0.354556 2_1:-963652 None:intergenic
GCTAAGTCATTAAGTGAATT+AGG 0.356165 2_1:+963395 Msa0186270:CDS
GCCTTATTTGTGCTTGAGAT+TGG 0.359941 2_1:-962683 None:intergenic
GGCCAGCAATGGTGCGGATT+TGG 0.384528 2_1:+963568 Msa0186270:CDS
TACACCAATGATCCTGTTGT+TGG 0.393076 2_1:+963683 Msa0186270:CDS
GAGATTGGAGGCTGTCCATC+TGG 0.397247 2_1:-962668 None:intergenic
TCAAATCTTCTAGGAAGATC+TGG 0.403955 2_1:-963620 None:intergenic
GACTCTAACCCTCATGCTTT+AGG 0.410599 2_1:+963362 Msa0186270:CDS
TTGTTGCTGGTGGATACAAT+AGG 0.419806 2_1:+963525 Msa0186270:CDS
CATGGGCATTAAGGACTCAT+TGG 0.438978 2_1:-963477 None:intergenic
GTGGAGATACATGGAGCTAA+TGG 0.442093 2_1:+963161 Msa0186270:CDS
AAAGCAGTTGTTGATGAGAT+TGG 0.442364 2_1:+963284 Msa0186270:CDS
TCTTGATTGGGGAAGCCTCA+GGG 0.444023 2_1:+961316 Msa0186270:CDS
GAGAATAAGAAAGTGGTTGA+AGG 0.446077 2_1:+961018 Msa0186270:CDS
CCATGTTGTATGGGGTGAGA+AGG 0.460955 2_1:-961056 None:intergenic
ATATCCAACAACAGGATCAT+TGG 0.464074 2_1:-963687 None:intergenic
TTATTTGTGCTTGAGATTGG+AGG 0.468685 2_1:-962680 None:intergenic
GCTGGAAGAGTGTCCAACTA+TGG 0.469322 2_1:+961943 Msa0186270:CDS
GTTGGAGCTGTTCATGAGAA+AGG 0.473716 2_1:+961892 Msa0186270:CDS
TCATGAACAGCTCCAACAAT+GGG 0.476202 2_1:-961886 None:intergenic
TCAAACATGGTGCACATCCC+AGG 0.477008 2_1:-963443 None:intergenic
CTTGCTTGATCAATTCCTAA+AGG 0.484914 2_1:+963187 Msa0186270:CDS
TATTCTCAACGAACAACAAA+GGG 0.489010 2_1:+961288 Msa0186270:CDS
TATTGTCATGTCATTGAACC+TGG 0.489334 2_1:+963425 Msa0186270:CDS
CTCATGAACAGCTCCAACAA+TGG 0.489730 2_1:-961887 None:intergenic
TCCATTGAAGATCTTTCTCA+TGG 0.490323 2_1:-963495 None:intergenic
CCCATGAGAAAGATCTTCAA+TGG 0.491062 2_1:+963494 Msa0186270:CDS
GTTGTGAGACGTCGAGGAGG+TGG 0.497052 2_1:-962737 None:intergenic
CATGTTGTATGGGGTGAGAA+GGG 0.498945 2_1:-961055 None:intergenic
TAATCAGTATATCCAACAAC+AGG 0.503211 2_1:-963695 None:intergenic
CCTAGAAGATTTGAGTTGGA+TGG 0.507273 2_1:+963629 Msa0186270:CDS
CTAAAACCAGATACCATAGT+TGG 0.509794 2_1:-961956 None:intergenic
GGAAGAAGAGAATAAGAAAG+TGG 0.510295 2_1:+961011 Msa0186270:CDS
GAAGCATGGAAACCCATTGT+TGG 0.513600 2_1:+961874 Msa0186270:CDS
TGGTATTTGGACAAGAGAAC+AGG 0.514806 2_1:+961849 Msa0186270:CDS
TCTTCCTAGAAGATTTGAGT+TGG 0.518058 2_1:+963625 Msa0186270:CDS
TTTGATGGAGTGGAGATACA+TGG 0.518838 2_1:+963152 Msa0186270:CDS
CATTCACAATAATCAGCATA+AGG 0.519406 2_1:-963335 None:intergenic
CCTTCTCACCCCATACAACA+TGG 0.541714 2_1:+961056 Msa0186270:CDS
CTTGATTGGGGAAGCCTCAG+GGG 0.545878 2_1:+961317 Msa0186270:CDS
CGGATTTGGTAGCTTATGGA+AGG 0.547082 2_1:+963582 Msa0186270:CDS
AACGACAGAGATGATGAGTA+TGG 0.548461 2_1:+963218 Msa0186270:CDS
CCATTGAAGATCTTTCTCAT+GGG 0.558552 2_1:-963494 None:intergenic
GGAACATTTATTGTTGCTGG+TGG 0.563883 2_1:+963515 Msa0186270:CDS
CAAGAGAACAGGTGGAAGCA+TGG 0.564931 2_1:+961860 Msa0186270:CDS
TGTTCTCTTGTCCAAATACC+AGG 0.570132 2_1:-961847 None:intergenic
GAAAATTCAATCTGTCCCAC+AGG 0.576865 2_1:+961079 Msa0186270:CDS
AAAGGGTGGCTTCTTGATTG+GGG 0.577699 2_1:+961305 Msa0186270:CDS
TCGTTGTCGCTTCCCTCTAG+AGG 0.579003 2_1:+963256 Msa0186270:CDS
TTATTCTCAACGAACAACAA+AGG 0.581092 2_1:+961287 Msa0186270:CDS
TATGCTGATTATTGTGAATG+TGG 0.581554 2_1:+963338 Msa0186270:CDS
ACTGCTTTCACAACCTCTAG+AGG 0.583197 2_1:-963269 None:intergenic
AACAATGTGTTGGCCAGCAA+TGG 0.583715 2_1:+963557 Msa0186270:CDS
TGAACAGGTTACCAACCAGA+TGG 0.587082 2_1:+962653 Msa0186270:intron
AGTTGTCAATGACTTCAGAA+TGG 0.592608 2_1:+962775 Msa0186270:CDS
GGTGGATACAATAGGACTGA+AGG 0.596483 2_1:+963533 Msa0186270:CDS
GGGGTCTCAGACACTGCACA+AGG 0.597651 2_1:+961336 Msa0186270:CDS
TTGGAGGCTGTCCATCTGGT+TGG 0.600157 2_1:-962664 None:intergenic
TTGTGAGACGTCGAGGAGGT+GGG 0.604708 2_1:-962736 None:intergenic
TGGTTGAGCAACGAAATTGA+AGG 0.607262 2_1:-961250 None:intergenic
GACTGAAGGAAACAATGTGT+TGG 0.609986 2_1:+963547 Msa0186270:CDS
ACAGAGATGATGAGTATGGT+GGG 0.612337 2_1:+963222 Msa0186270:CDS
ATGTAGATGCCTAAAGCATG+AGG 0.612576 2_1:-963371 None:intergenic
TCATGCTTTAGGCATCTACA+TGG 0.616635 2_1:+963373 Msa0186270:CDS
GAGATTGGAGCTGACAAAGT+TGG 0.616749 2_1:+963299 Msa0186270:CDS
CTGCTTTCACAACCTCTAGA+GGG 0.620027 2_1:-963268 None:intergenic
GACAGAGATGATGAGTATGG+TGG 0.624080 2_1:+963221 Msa0186270:CDS
TCATCGGTTGTGAGACGTCG+AGG 0.630333 2_1:-962743 None:intergenic
GTTGGATGGCCAATTGAACA+AGG 0.634338 2_1:+963643 Msa0186270:CDS
ATGTTGTATGGGGTGAGAAG+GGG 0.635447 2_1:-961054 None:intergenic
ATTGTCATGTCATTGAACCT+GGG 0.637262 2_1:+963426 Msa0186270:CDS
TTGCACCTTTAACAAGAACA+AGG 0.637602 2_1:+961226 Msa0186270:CDS
TCTCAACGAACAACAAAGGG+TGG 0.642936 2_1:+961291 Msa0186270:CDS
AATAAGGCACTACAAAAGCA+AGG 0.645729 2_1:+962698 Msa0186270:CDS
TGAAGGTACCCAAATACACC+TGG 0.648170 2_1:+961829 Msa0186270:intron
TGCAGTGTCTGAGACCCCTG+AGG 0.651692 2_1:-961331 None:intergenic
TATTTGGACAAGAGAACAGG+TGG 0.653872 2_1:+961852 Msa0186270:CDS
CTTCTCACCCCATACAACAT+GGG 0.659177 2_1:+961057 Msa0186270:CDS
GGAGCTGTTCATGAGAAAGG+AGG 0.677401 2_1:+961895 Msa0186270:CDS
TGTAGATGCCTAAAGCATGA+GGG 0.695124 2_1:-963370 None:intergenic
TGTGTTGGCCAGCAATGGTG+CGG 0.698432 2_1:+963562 Msa0186270:CDS
GAATAATAAAGAGCAGCATG+TGG 0.702052 2_1:-961270 None:intergenic
TCGGTTGTGAGACGTCGAGG+AGG 0.709608 2_1:-962740 None:intergenic
GGGTCTCAGACACTGCACAA+GGG 0.738404 2_1:+961337 Msa0186270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGATTTTTTTAAAACTAAT+GGG - chr2_1:962062-962081 None:intergenic 10.0%
!!! AAAGATTTTTTTAAAACTAA+TGG - chr2_1:962063-962082 None:intergenic 10.0%
!!! ATTAGTTTTAAAAAAATCTT+TGG + chr2_1:962062-962081 Msa0186270:intron 10.0%
!!! TTAGTTTTAAAAAAATCTTT+GGG + chr2_1:962063-962082 Msa0186270:intron 10.0%
!!! TTACTTTTTAAAAAATCTTT+GGG - chr2_1:962323-962342 None:intergenic 10.0%
!!! ATTACTTTTTAAAAAATCTT+TGG - chr2_1:962324-962343 None:intergenic 10.0%
!!! AAAGATTTTTTAAAAAGTAA+TGG + chr2_1:962323-962342 Msa0186270:intron 10.0%
!!! AAGATTTTTTAAAAAGTAAT+GGG + chr2_1:962324-962343 Msa0186270:intron 10.0%
!! TATAAAACTAAAATAAATAC+AGG + chr2_1:963128-963147 Msa0186270:intron 10.0%
!! TAAATAAATTATTTACCTGT+GGG - chr2_1:961097-961116 None:intergenic 15.0%
!!! AAATAACAACTCTATTTTTT+TGG + chr2_1:961429-961448 Msa0186270:intron 15.0%
!!! AATAACAACTCTATTTTTTT+GGG + chr2_1:961430-961449 Msa0186270:intron 15.0%
!!! ATTGTAAAAATGTTTTTTGT+AGG - chr2_1:961506-961525 None:intergenic 15.0%
!!! TACAAAAAACATTTTTACAA+TGG + chr2_1:961505-961524 Msa0186270:intron 15.0%
!!! TGTGTTTTATTACATTAAAA+TGG + chr2_1:962424-962443 Msa0186270:intron 15.0%
!!! GTGTTTTATTACATTAAAAT+GGG + chr2_1:962425-962444 Msa0186270:intron 15.0%
!! TTCTTAGATAAAATAATTCT+TGG + chr2_1:962548-962567 Msa0186270:intron 15.0%
!! TGCAATATCAATTTATTATT+TGG + chr2_1:962833-962852 Msa0186270:intron 15.0%
!! CTAAATAAATTATTTACCTG+TGG - chr2_1:961098-961117 None:intergenic 20.0%
!! ACAAATTTGATTGTTAACAT+TGG - chr2_1:961666-961685 None:intergenic 20.0%
!! ACAATGAATAGTTACAATAT+AGG - chr2_1:961730-961749 None:intergenic 20.0%
!! TATTAAAAGACGAATTGTTT+AGG + chr2_1:962106-962125 Msa0186270:intron 20.0%
!! ACTAAACAATTTACTTCAAA+TGG + chr2_1:962499-962518 Msa0186270:intron 20.0%
!! ATAAAATTGTAATATCATGC+AGG + chr2_1:962927-962946 Msa0186270:intron 20.0%
!! TAAAATTGTAATATCATGCA+GGG + chr2_1:962928-962947 Msa0186270:intron 20.0%
!!! AAAATAAATACAGGTTTTGA+TGG + chr2_1:963137-963156 Msa0186270:intron 20.0%
!! CCATCAAATAATCTAAAGTT+CGG - chr2_1:962191-962210 None:intergenic 25.0%
! TGGTTAATAAACTAAGAACT+CGG + chr2_1:962519-962538 Msa0186270:intron 25.0%
! AACGTTCTATCGATATATAT+AGG - chr2_1:962631-962650 None:intergenic 25.0%
! TGAATTTTCCCATGTTGTAT+GGG - chr2_1:961068-961087 None:intergenic 30.0%
! TTGAATTTTCCCATGTTGTA+TGG - chr2_1:961069-961088 None:intergenic 30.0%
AGTTCAATTCAATGTGATGA+GGG - chr2_1:961132-961151 None:intergenic 30.0%
AAGTTCAATTCAATGTGATG+AGG - chr2_1:961133-961152 None:intergenic 30.0%
!! TTTTGTGTGTGTGTCTTATT+AGG + chr2_1:961196-961215 Msa0186270:intron 30.0%
TTATTCTCAACGAACAACAA+AGG + chr2_1:961287-961306 Msa0186270:CDS 30.0%
TATTCTCAACGAACAACAAA+GGG + chr2_1:961288-961307 Msa0186270:CDS 30.0%
TGAGCTTGAGAACAAAAATA+GGG - chr2_1:961374-961393 None:intergenic 30.0%
ATGAGCTTGAGAACAAAAAT+AGG - chr2_1:961375-961394 None:intergenic 30.0%
GTGTATATGTATGTAATGAC+TGG + chr2_1:961529-961548 Msa0186270:intron 30.0%
TTAGATCAAATGAGATGCAA+TGG + chr2_1:961629-961648 Msa0186270:intron 30.0%
!! TCTCAATGTTTTTGAATCCT+TGG + chr2_1:961802-961821 Msa0186270:intron 30.0%
! TTTGAATCCTTGGTAATTGA+AGG + chr2_1:961812-961831 Msa0186270:intron 30.0%
! GCATATTCTTTTGTCAACTT+TGG + chr2_1:961917-961936 Msa0186270:CDS 30.0%
GTTTATGTTATAATTTCCCC+TGG + chr2_1:961997-962016 Msa0186270:intron 30.0%
! CGAATTGTTTAGGAGAATTT+TGG + chr2_1:962116-962135 Msa0186270:intron 30.0%
AAAAACTGATGACACAAACA+AGG - chr2_1:962144-962163 None:intergenic 30.0%
CCGAACTTTAGATTATTTGA+TGG + chr2_1:962188-962207 Msa0186270:intron 30.0%
! TGAAGTCATTGACAACTTTT+GGG - chr2_1:962772-962791 None:intergenic 30.0%
CTAATAATTACCTGCTTCTA+TGG - chr2_1:962813-962832 None:intergenic 30.0%
CTCTAGTGTAATCTAATTAG+AGG - chr2_1:962964-962983 None:intergenic 30.0%
CATTCACAATAATCAGCATA+AGG - chr2_1:963338-963357 None:intergenic 30.0%
! TATGCTGATTATTGTGAATG+TGG + chr2_1:963338-963357 Msa0186270:CDS 30.0%
GCTAAGTCATTAAGTGAATT+AGG + chr2_1:963395-963414 Msa0186270:CDS 30.0%
AATGGAACATTTATTGTTGC+TGG + chr2_1:963512-963531 Msa0186270:CDS 30.0%
TAATCAGTATATCCAACAAC+AGG - chr2_1:963698-963717 None:intergenic 30.0%
!! CTAGTAGCATTTTCAAGAAA+TGG - chr2_1:963722-963741 None:intergenic 30.0%
GGAAGAAGAGAATAAGAAAG+TGG + chr2_1:961011-961030 Msa0186270:CDS 35.0%
GAGAATAAGAAAGTGGTTGA+AGG + chr2_1:961018-961037 Msa0186270:CDS 35.0%
! GAATTTTCCCATGTTGTATG+GGG - chr2_1:961067-961086 None:intergenic 35.0%
TTGCACCTTTAACAAGAACA+AGG + chr2_1:961226-961245 Msa0186270:CDS 35.0%
AAGGACCTTGTTCTTGTTAA+AGG - chr2_1:961234-961253 None:intergenic 35.0%
GAATAATAAAGAGCAGCATG+TGG - chr2_1:961273-961292 None:intergenic 35.0%
GAGAACAAAAATAGGGTAGT+TGG - chr2_1:961367-961386 None:intergenic 35.0%
TCCAAATACCAGGTGTATTT+GGG - chr2_1:961840-961859 None:intergenic 35.0%
CTAAAACCAGATACCATAGT+TGG - chr2_1:961959-961978 None:intergenic 35.0%
TACTTGCGTTAGACAATTCT+TGG - chr2_1:962243-962262 None:intergenic 35.0%
AGAATTGTCTAACGCAAGTA+AGG + chr2_1:962243-962262 Msa0186270:intron 35.0%
! TCGATAGAACGTTTTTGAAC+AGG + chr2_1:962638-962657 Msa0186270:intron 35.0%
TTATTTGTGCTTGAGATTGG+AGG - chr2_1:962683-962702 None:intergenic 35.0%
TCCAATCTCAAGCACAAATA+AGG + chr2_1:962682-962701 Msa0186270:CDS 35.0%
! AATAAGGCACTACAAAAGCA+AGG + chr2_1:962698-962717 Msa0186270:CDS 35.0%
!!! GACAACTTTTGGGATTTCAT+CGG - chr2_1:962762-962781 None:intergenic 35.0%
! CTGAAGTCATTGACAACTTT+TGG - chr2_1:962773-962792 None:intergenic 35.0%
AGTTGTCAATGACTTCAGAA+TGG + chr2_1:962775-962794 Msa0186270:CDS 35.0%
ACATCATTGCTATGTATGCA+GGG - chr2_1:962992-963011 None:intergenic 35.0%
!! AAATACAGGTTTTGATGGAG+TGG + chr2_1:963142-963161 Msa0186270:intron 35.0%
CTTGCTTGATCAATTCCTAA+AGG + chr2_1:963187-963206 Msa0186270:CDS 35.0%
! AAAGCAGTTGTTGATGAGAT+TGG + chr2_1:963284-963303 Msa0186270:CDS 35.0%
TATTGTCATGTCATTGAACC+TGG + chr2_1:963425-963444 Msa0186270:CDS 35.0%
ATTGTCATGTCATTGAACCT+GGG + chr2_1:963426-963445 Msa0186270:CDS 35.0%
!! GGTGTCACATTTTTCAAACA+TGG - chr2_1:963459-963478 None:intergenic 35.0%
CCATTGAAGATCTTTCTCAT+GGG - chr2_1:963497-963516 None:intergenic 35.0%
TCCATTGAAGATCTTTCTCA+TGG - chr2_1:963498-963517 None:intergenic 35.0%
! TCAAATCTTCTAGGAAGATC+TGG - chr2_1:963623-963642 None:intergenic 35.0%
TCTTCCTAGAAGATTTGAGT+TGG + chr2_1:963625-963644 Msa0186270:CDS 35.0%
!! TCTTATCAGCCTTGTTCAAT+TGG - chr2_1:963655-963674 None:intergenic 35.0%
ATATCCAACAACAGGATCAT+TGG - chr2_1:963690-963709 None:intergenic 35.0%
GAAAATTCAATCTGTCCCAC+AGG + chr2_1:961079-961098 Msa0186270:CDS 40.0%
ATTCAATGTGATGAGGGTCT+AGG - chr2_1:961126-961145 None:intergenic 40.0%
TGGTTGAGCAACGAAATTGA+AGG - chr2_1:961253-961272 None:intergenic 40.0%
TTGGGTACCTTCAATTACCA+AGG - chr2_1:961822-961841 None:intergenic 40.0%
ACCCAAATACACCTGGTATT+TGG + chr2_1:961836-961855 Msa0186270:CDS 40.0%
GTCCAAATACCAGGTGTATT+TGG - chr2_1:961841-961860 None:intergenic 40.0%
TGTTCTCTTGTCCAAATACC+AGG - chr2_1:961850-961869 None:intergenic 40.0%
TGGTATTTGGACAAGAGAAC+AGG + chr2_1:961849-961868 Msa0186270:CDS 40.0%
TATTTGGACAAGAGAACAGG+TGG + chr2_1:961852-961871 Msa0186270:CDS 40.0%
TCATGAACAGCTCCAACAAT+GGG - chr2_1:961889-961908 None:intergenic 40.0%
!! CCGTATTGTTTCTAATCCAG+GGG - chr2_1:962016-962035 None:intergenic 40.0%
! CCCCTGGATTAGAAACAATA+CGG + chr2_1:962013-962032 Msa0186270:intron 40.0%
!! CCCGTATTGTTTCTAATCCA+GGG - chr2_1:962017-962036 None:intergenic 40.0%
! CCCTGGATTAGAAACAATAC+GGG + chr2_1:962014-962033 Msa0186270:intron 40.0%
GTCAGATTTCGCTTATCATG+TGG + chr2_1:962165-962184 Msa0186270:intron 40.0%
!! GCCTTATTTGTGCTTGAGAT+TGG - chr2_1:962686-962705 None:intergenic 40.0%
! ACCTGCTTCTATGGCATTTT+TGG - chr2_1:962804-962823 None:intergenic 40.0%
CACATCATTGCTATGTATGC+AGG - chr2_1:962993-963012 None:intergenic 40.0%
TTTGATGGAGTGGAGATACA+TGG + chr2_1:963152-963171 Msa0186270:CDS 40.0%
TGTCGTTCACTTTGTCCTTT+AGG - chr2_1:963205-963224 None:intergenic 40.0%
AACGACAGAGATGATGAGTA+TGG + chr2_1:963218-963237 Msa0186270:CDS 40.0%
ACAGAGATGATGAGTATGGT+GGG + chr2_1:963222-963241 Msa0186270:CDS 40.0%
TGTAGATGCCTAAAGCATGA+GGG - chr2_1:963373-963392 None:intergenic 40.0%
ATGTAGATGCCTAAAGCATG+AGG - chr2_1:963374-963393 None:intergenic 40.0%
! TCATGCTTTAGGCATCTACA+TGG + chr2_1:963373-963392 Msa0186270:CDS 40.0%
GATCTTTCTCATGGGCATTA+AGG - chr2_1:963489-963508 None:intergenic 40.0%
CCCATGAGAAAGATCTTCAA+TGG + chr2_1:963494-963513 Msa0186270:CDS 40.0%
GGAACATTTATTGTTGCTGG+TGG + chr2_1:963515-963534 Msa0186270:CDS 40.0%
! TTGTTGCTGGTGGATACAAT+AGG + chr2_1:963525-963544 Msa0186270:CDS 40.0%
GACTGAAGGAAACAATGTGT+TGG + chr2_1:963547-963566 Msa0186270:CDS 40.0%
! AGCTTATGGAAGGCTCTTTT+TGG + chr2_1:963592-963611 Msa0186270:CDS 40.0%
CCATCCAACTCAAATCTTCT+AGG - chr2_1:963632-963651 None:intergenic 40.0%
!! CCTAGAAGATTTGAGTTGGA+TGG + chr2_1:963629-963648 Msa0186270:CDS 40.0%
TACACCAATGATCCTGTTGT+TGG + chr2_1:963683-963702 Msa0186270:CDS 40.0%
ATGTTGTATGGGGTGAGAAG+GGG - chr2_1:961057-961076 None:intergenic 45.0%
CATGTTGTATGGGGTGAGAA+GGG - chr2_1:961058-961077 None:intergenic 45.0%
CTTCTCACCCCATACAACAT+GGG + chr2_1:961057-961076 Msa0186270:CDS 45.0%
TCTCAACGAACAACAAAGGG+TGG + chr2_1:961291-961310 Msa0186270:CDS 45.0%
ACAAAGGGTGGCTTCTTGAT+TGG + chr2_1:961303-961322 Msa0186270:CDS 45.0%
CAAAGGGTGGCTTCTTGATT+GGG + chr2_1:961304-961323 Msa0186270:CDS 45.0%
AAAGGGTGGCTTCTTGATTG+GGG + chr2_1:961305-961324 Msa0186270:CDS 45.0%
!! TGAAGGTACCCAAATACACC+TGG + chr2_1:961829-961848 Msa0186270:intron 45.0%
GAAGCATGGAAACCCATTGT+TGG + chr2_1:961874-961893 Msa0186270:CDS 45.0%
CTCATGAACAGCTCCAACAA+TGG - chr2_1:961890-961909 None:intergenic 45.0%
GTTGGAGCTGTTCATGAGAA+AGG + chr2_1:961892-961911 Msa0186270:CDS 45.0%
! TTTTGTCAACTTTGGCACGC+TGG + chr2_1:961925-961944 Msa0186270:CDS 45.0%
GAGTGTCCAACTATGGTATC+TGG + chr2_1:961950-961969 Msa0186270:intron 45.0%
!! GCCCGTATTGTTTCTAATCC+AGG - chr2_1:962018-962037 None:intergenic 45.0%
TGAACAGGTTACCAACCAGA+TGG + chr2_1:962653-962672 Msa0186270:intron 45.0%
GCCAAAAATGCCATAGAAGC+AGG + chr2_1:962800-962819 Msa0186270:CDS 45.0%
GTGGAGATACATGGAGCTAA+TGG + chr2_1:963161-963180 Msa0186270:CDS 45.0%
GACAGAGATGATGAGTATGG+TGG + chr2_1:963221-963240 Msa0186270:CDS 45.0%
CTGCTTTCACAACCTCTAGA+GGG - chr2_1:963271-963290 None:intergenic 45.0%
ACTGCTTTCACAACCTCTAG+AGG - chr2_1:963272-963291 None:intergenic 45.0%
GAGATTGGAGCTGACAAAGT+TGG + chr2_1:963299-963318 Msa0186270:CDS 45.0%
GACTCTAACCCTCATGCTTT+AGG + chr2_1:963362-963381 Msa0186270:CDS 45.0%
CATGGGCATTAAGGACTCAT+TGG - chr2_1:963480-963499 None:intergenic 45.0%
GGTGGATACAATAGGACTGA+AGG + chr2_1:963533-963552 Msa0186270:CDS 45.0%
! AACAATGTGTTGGCCAGCAA+TGG + chr2_1:963557-963576 Msa0186270:CDS 45.0%
! CGGATTTGGTAGCTTATGGA+AGG + chr2_1:963582-963601 Msa0186270:CDS 45.0%
GTTGGATGGCCAATTGAACA+AGG + chr2_1:963643-963662 Msa0186270:CDS 45.0%
CCATGTTGTATGGGGTGAGA+AGG - chr2_1:961059-961078 None:intergenic 50.0%
CCTTCTCACCCCATACAACA+TGG + chr2_1:961056-961075 Msa0186270:CDS 50.0%
TTCTTGATTGGGGAAGCCTC+AGG + chr2_1:961315-961334 Msa0186270:CDS 50.0%
TCTTGATTGGGGAAGCCTCA+GGG + chr2_1:961316-961335 Msa0186270:CDS 50.0%
CAAGAGAACAGGTGGAAGCA+TGG + chr2_1:961860-961879 Msa0186270:CDS 50.0%
GGAGCTGTTCATGAGAAAGG+AGG + chr2_1:961895-961914 Msa0186270:CDS 50.0%
!! GCTGGAAGAGTGTCCAACTA+TGG + chr2_1:961943-961962 Msa0186270:CDS 50.0%
TCAAACATGGTGCACATCCC+AGG - chr2_1:963446-963465 None:intergenic 50.0%
TACCAAATCCGCACCATTGC+TGG - chr2_1:963573-963592 None:intergenic 50.0%
! GGTGCGGATTTGGTAGCTTA+TGG + chr2_1:963578-963597 Msa0186270:CDS 50.0%
CTTGATTGGGGAAGCCTCAG+GGG + chr2_1:961317-961336 Msa0186270:CDS 55.0%
GGGTCTCAGACACTGCACAA+GGG + chr2_1:961337-961356 Msa0186270:CDS 55.0%
TTGGAGGCTGTCCATCTGGT+TGG - chr2_1:962667-962686 None:intergenic 55.0%
GAGATTGGAGGCTGTCCATC+TGG - chr2_1:962671-962690 None:intergenic 55.0%
TTGTGAGACGTCGAGGAGGT+GGG - chr2_1:962739-962758 None:intergenic 55.0%
! TCATCGGTTGTGAGACGTCG+AGG - chr2_1:962746-962765 None:intergenic 55.0%
! TCGTTGTCGCTTCCCTCTAG+AGG + chr2_1:963256-963275 Msa0186270:CDS 55.0%
! TGTGTTGGCCAGCAATGGTG+CGG + chr2_1:963562-963581 Msa0186270:CDS 55.0%
! TGCAGTGTCTGAGACCCCTG+AGG - chr2_1:961334-961353 None:intergenic 60.0%
GGGGTCTCAGACACTGCACA+AGG + chr2_1:961336-961355 Msa0186270:CDS 60.0%
GTTGTGAGACGTCGAGGAGG+TGG - chr2_1:962740-962759 None:intergenic 60.0%
TCGGTTGTGAGACGTCGAGG+AGG - chr2_1:962743-962762 None:intergenic 60.0%
GGCCAGCAATGGTGCGGATT+TGG + chr2_1:963568-963587 Msa0186270:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 961009 963745 961009 ID=Msa0186270;Name=Msa0186270
chr2_1 mRNA 961009 963745 961009 ID=Msa0186270-mRNA-1;Parent=Msa0186270;Name=Msa0186270-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|5|0|373
chr2_1 exon 961009 961100 961009 ID=Msa0186270-mRNA-1:exon:237;Parent=Msa0186270-mRNA-1
chr2_1 exon 961218 961358 961218 ID=Msa0186270-mRNA-1:exon:238;Parent=Msa0186270-mRNA-1
chr2_1 exon 961834 961964 961834 ID=Msa0186270-mRNA-1:exon:239;Parent=Msa0186270-mRNA-1
chr2_1 exon 962660 962821 962660 ID=Msa0186270-mRNA-1:exon:240;Parent=Msa0186270-mRNA-1
chr2_1 exon 963150 963745 963150 ID=Msa0186270-mRNA-1:exon:241;Parent=Msa0186270-mRNA-1
chr2_1 CDS 961009 961100 961009 ID=Msa0186270-mRNA-1:cds;Parent=Msa0186270-mRNA-1
chr2_1 CDS 961218 961358 961218 ID=Msa0186270-mRNA-1:cds;Parent=Msa0186270-mRNA-1
chr2_1 CDS 961834 961964 961834 ID=Msa0186270-mRNA-1:cds;Parent=Msa0186270-mRNA-1
chr2_1 CDS 962660 962821 962660 ID=Msa0186270-mRNA-1:cds;Parent=Msa0186270-mRNA-1
chr2_1 CDS 963150 963745 963150 ID=Msa0186270-mRNA-1:cds;Parent=Msa0186270-mRNA-1
Gene Sequence

>Msa0186270

ATGGAAGAAGAGAATAAGAAAGTGGTTGAAGGAAAAGAAGTGATACCCCTTCTCACCCCATACAACATGGGAAAATTCAATCTGTCCCACAGGATAGTTCTTGCACCTTTAACAAGAACAAGGTCCTTCAATTTCGTTGCTCAACCACATGCTGCTCTTTATTATTCTCAACGAACAACAAAGGGTGGCTTCTTGATTGGGGAAGCCTCAGGGGTCTCAGACACTGCACAAGGGTACCCAAATACACCTGGTATTTGGACAAGAGAACAGGTGGAAGCATGGAAACCCATTGTTGGAGCTGTTCATGAGAAAGGAGGCATATTCTTTTGTCAACTTTGGCACGCTGGAAGAGTGTCCAACTATGGTTACCAACCAGATGGACAGCCTCCAATCTCAAGCACAAATAAGGCACTACAAAAGCAAGGTAGCAGCACTAAGTACCCACCTCCTCGACGTCTCACAACCGATGAAATCCCAAAAGTTGTCAATGACTTCAGAATGGCAGCCAAAAATGCCATAGAAGCAGGTTTTGATGGAGTGGAGATACATGGAGCTAATGGATACTTGCTTGATCAATTCCTAAAGGACAAAGTGAACGACAGAGATGATGAGTATGGTGGGAGCGTAGAAAATCGTTGTCGCTTCCCTCTAGAGGTTGTGAAAGCAGTTGTTGATGAGATTGGAGCTGACAAAGTTGGTGTTAGACTTTCACCTTATGCTGATTATTGTGAATGTGGAGACTCTAACCCTCATGCTTTAGGCATCTACATGGCTAAGTCATTAAGTGAATTAGGCATTCTCTATTGTCATGTCATTGAACCTGGGATGTGCACCATGTTTGAAAAATGTGACACCAATGAGTCCTTAATGCCCATGAGAAAGATCTTCAATGGAACATTTATTGTTGCTGGTGGATACAATAGGACTGAAGGAAACAATGTGTTGGCCAGCAATGGTGCGGATTTGGTAGCTTATGGAAGGCTCTTTTTGGCAAATCCAGATCTTCCTAGAAGATTTGAGTTGGATGGCCAATTGAACAAGGCTGATAAGAGTACTTTTTACACCAATGATCCTGTTGTTGGATATACTGATTATCCATTTCTTGAAAATGCTACTAGCTAG

Protein sequence

>Msa0186270

MEEENKKVVEGKEVIPLLTPYNMGKFNLSHRIVLAPLTRTRSFNFVAQPHAALYYSQRTTKGGFLIGEASGVSDTAQGYPNTPGIWTREQVEAWKPIVGAVHEKGGIFFCQLWHAGRVSNYGYQPDGQPPISSTNKALQKQGSSTKYPPPRRLTTDEIPKVVNDFRMAAKNAIEAGFDGVEIHGANGYLLDQFLKDKVNDRDDEYGGSVENRCRFPLEVVKAVVDEIGADKVGVRLSPYADYCECGDSNPHALGIYMAKSLSELGILYCHVIEPGMCTMFEKCDTNESLMPMRKIFNGTFIVAGGYNRTEGNNVLASNGADLVAYGRLFLANPDLPRRFELDGQLNKADKSTFYTNDPVVGYTDYPFLENATS*