Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387340 | XP_013462297.1 | 96.703 | 364 | 11 | 1 | 10 | 372 | 3 | 366 | 0.0 | 736 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387340 | sp|Q8LAH7|OPR1_ARATH | 68.852 | 366 | 109 | 1 | 10 | 370 | 5 | 370 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387340 | A0A072V3D1 | 96.703 | 364 | 11 | 1 | 10 | 372 | 3 | 366 | 0.0 | 736 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0186270 | Msa0387340 | 0.918483 | 1.474880e-86 | -8.615850e-47 |
| Msa0386080 | Msa0387340 | 0.831671 | 1.462434e-55 | -8.615850e-47 |
| Msa0387340 | Msa0661670 | 0.923354 | 2.965975e-89 | -8.615850e-47 |
| Msa0387340 | Msa0871420 | 0.815485 | 9.022641e-52 | -8.615850e-47 |
| Msa0387340 | Msa0936630 | 0.804685 | 1.918512e-49 | -8.615850e-47 |
| Msa0387340 | Msa1040330 | 0.804245 | 2.370186e-49 | -8.615850e-47 |
| Msa0387340 | Msa1173540 | 0.980920 | 2.395854e-151 | -8.615850e-47 |
| Msa0387340 | Msa1265570 | 0.802668 | 5.030495e-49 | -8.615850e-47 |
| Msa0387340 | Msa1334670 | 0.803706 | 3.067154e-49 | -8.615850e-47 |
| Msa0387340 | Msa1365230 | 0.801224 | 9.959829e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387340 | MtrunA17_Chr3g0144001 | 96.703 | 364 | 11 | 1 | 10 | 372 | 3 | 366 | 0.0 | 736 |
| Msa0387340 | MtrunA17_Chr5g0394891 | 70.492 | 366 | 103 | 1 | 9 | 369 | 4 | 369 | 0.0 | 555 |
| Msa0387340 | MtrunA17_Chr5g0394771 | 70.986 | 355 | 102 | 1 | 15 | 369 | 38 | 391 | 0.0 | 545 |
| Msa0387340 | MtrunA17_Chr5g0394861 | 69.613 | 362 | 103 | 2 | 15 | 369 | 10 | 371 | 0.0 | 534 |
| Msa0387340 | MtrunA17_Chr5g0394751 | 69.577 | 355 | 107 | 1 | 15 | 369 | 6 | 359 | 0.0 | 531 |
| Msa0387340 | MtrunA17_Chr5g0395841 | 67.688 | 359 | 111 | 1 | 15 | 368 | 12 | 370 | 0.0 | 531 |
| Msa0387340 | MtrunA17_Chr5g0394841 | 67.680 | 362 | 110 | 2 | 15 | 369 | 10 | 371 | 0.0 | 525 |
| Msa0387340 | MtrunA17_Chr5g0394811 | 66.389 | 360 | 116 | 2 | 15 | 369 | 119 | 478 | 0.0 | 515 |
| Msa0387340 | MtrunA17_Chr5g0394811 | 79.208 | 101 | 21 | 0 | 23 | 123 | 1 | 101 | 8.05e-51 | 176 |
| Msa0387340 | MtrunA17_Chr4g0070561 | 53.514 | 370 | 154 | 5 | 17 | 368 | 19 | 388 | 8.26e-138 | 398 |
| Msa0387340 | MtrunA17_Chr5g0394791 | 64.072 | 167 | 49 | 2 | 15 | 176 | 9 | 169 | 7.77e-71 | 220 |
| Msa0387340 | MtrunA17_Chr5g0394801 | 54.255 | 188 | 59 | 1 | 174 | 361 | 25 | 185 | 4.76e-66 | 209 |
| Msa0387340 | MtrunA17_Chr3g0130471 | 72.093 | 43 | 12 | 0 | 194 | 236 | 1 | 43 | 4.88e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387340 | AT1G76680.1 | 68.852 | 366 | 109 | 1 | 10 | 370 | 5 | 370 | 0.0 | 536 |
| Msa0387340 | AT1G76690.1 | 67.760 | 366 | 113 | 1 | 10 | 370 | 7 | 372 | 0.0 | 535 |
| Msa0387340 | AT1G76680.2 | 64.450 | 391 | 109 | 2 | 10 | 370 | 5 | 395 | 0.0 | 523 |
| Msa0387340 | AT1G09400.1 | 66.154 | 325 | 109 | 1 | 23 | 347 | 1 | 324 | 3.62e-164 | 462 |
| Msa0387340 | AT2G06050.2 | 52.139 | 374 | 157 | 4 | 17 | 368 | 12 | 385 | 6.17e-136 | 393 |
| Msa0387340 | AT2G06050.1 | 52.139 | 374 | 157 | 4 | 17 | 368 | 12 | 385 | 6.17e-136 | 393 |
| Msa0387340 | AT2G06050.3 | 52.139 | 374 | 157 | 4 | 17 | 368 | 12 | 385 | 6.17e-136 | 393 |
| Msa0387340 | AT1G09400.2 | 67.170 | 265 | 86 | 1 | 83 | 347 | 2 | 265 | 6.65e-134 | 383 |
| Msa0387340 | AT1G17990.1 | 65.251 | 259 | 88 | 2 | 9 | 266 | 1 | 258 | 1.96e-128 | 370 |
| Msa0387340 | AT1G18020.1 | 65.251 | 259 | 88 | 2 | 9 | 266 | 1 | 258 | 1.96e-128 | 370 |
| Msa0387340 | AT1G17990.2 | 62.548 | 259 | 87 | 3 | 9 | 266 | 1 | 250 | 1.08e-119 | 347 |
Find 100 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCAAATACCAGGTGTATT+TGG | 0.127154 | 3_1:-91276676 | None:intergenic |
| CTGAAGTCATTGACAACTTT+TGG | 0.134544 | 3_1:-91277608 | None:intergenic |
| AAGGACCTTGTTCTTGTTAA+AGG | 0.178211 | 3_1:-91276069 | None:intergenic |
| TGTCGTTCACTTTGTCCTTT+AGG | 0.228951 | 3_1:-91278026 | None:intergenic |
| ACCCAAATACACCTGGTATT+TGG | 0.251049 | 3_1:+91276674 | Msa0387340:CDS |
| GATCTTTCTCATGGGCATTA+AGG | 0.258096 | 3_1:-91278310 | None:intergenic |
| CTAATAATTACCTGCTTCTA+TGG | 0.268887 | 3_1:-91277648 | None:intergenic |
| TTCTTGATTGGGGAAGCCTC+AGG | 0.303380 | 3_1:+91276153 | Msa0387340:CDS |
| TCCAATCTCAAGCACAAATA+AGG | 0.308704 | 3_1:+91277520 | Msa0387340:CDS |
| TCTTATCAGCCTTGTTCAAT+TGG | 0.321623 | 3_1:-91278476 | None:intergenic |
| GGTGCGGATTTGGTAGCTTA+TGG | 0.322401 | 3_1:+91278402 | Msa0387340:CDS |
| TACCAAATCCGCACCATTGC+TGG | 0.328132 | 3_1:-91278394 | None:intergenic |
| CAAAGGGTGGCTTCTTGATT+GGG | 0.332102 | 3_1:+91276142 | Msa0387340:CDS |
| ACAAAGGGTGGCTTCTTGAT+TGG | 0.332916 | 3_1:+91276141 | Msa0387340:CDS |
| GCATCCAACTCAAATCTTCT+AGG | 0.344741 | 3_1:-91278453 | None:intergenic |
| AATGGAACATTTATTGTTGC+TGG | 0.345581 | 3_1:+91278336 | Msa0387340:CDS |
| TCCAAATACCAGGTGTATTT+GGG | 0.345635 | 3_1:-91276675 | None:intergenic |
| GCTAAGTCATTAAGTGAATT+AGG | 0.356165 | 3_1:+91278219 | Msa0387340:CDS |
| GCCTTATTTGTGCTTGAGAT+TGG | 0.359941 | 3_1:-91277521 | None:intergenic |
| GGCCAGCAATGGTGCGGATT+TGG | 0.384528 | 3_1:+91278392 | Msa0387340:CDS |
| TACACCAATGATCCTGTTGT+TGG | 0.393076 | 3_1:+91278507 | Msa0387340:CDS |
| GAGATTGGAGGCTGTCCATC+TGG | 0.397247 | 3_1:-91277506 | None:intergenic |
| CTTATCAGCCTTGTTCAATT+GGG | 0.402003 | 3_1:-91278475 | None:intergenic |
| TCAAATCTTCTAGGAAGATC+TGG | 0.403955 | 3_1:-91278444 | None:intergenic |
| GACTCTAACCCTCATGCTTT+AGG | 0.410599 | 3_1:+91278186 | Msa0387340:CDS |
| TTGTTGCTGGTGGATACAAT+AGG | 0.419806 | 3_1:+91278349 | Msa0387340:CDS |
| CATGGGCATTAAGGACTCAT+TGG | 0.438978 | 3_1:-91278301 | None:intergenic |
| GTGGAGATACATGGAGCTAA+TGG | 0.442093 | 3_1:+91277985 | Msa0387340:CDS |
| AAAGCAGTTGTTGATGAGAT+TGG | 0.442364 | 3_1:+91278108 | Msa0387340:CDS |
| TCTTGATTGGGGAAGCCTCA+GGG | 0.444023 | 3_1:+91276154 | Msa0387340:CDS |
| GAGAATAAGAAAGTGGTTGA+AGG | 0.446077 | 3_1:+91275856 | Msa0387340:CDS |
| CCATGTTGTATGGGGTGAGA+AGG | 0.460955 | 3_1:-91275894 | None:intergenic |
| ATATCCAACAACAGGATCAT+TGG | 0.464074 | 3_1:-91278511 | None:intergenic |
| TTATTTGTGCTTGAGATTGG+AGG | 0.468685 | 3_1:-91277518 | None:intergenic |
| GCTGGAAGAGTGTCCAACTA+TGG | 0.469322 | 3_1:+91276781 | Msa0387340:CDS |
| GTTGGAGCTGTTCATGAGAA+AGG | 0.473716 | 3_1:+91276730 | Msa0387340:CDS |
| TCATGAACAGCTCCAACAAT+GGG | 0.476202 | 3_1:-91276724 | None:intergenic |
| TCAAACATGGTGCACATCCC+AGG | 0.477008 | 3_1:-91278267 | None:intergenic |
| CTTGCTTGATCAATTCCTAA+AGG | 0.484914 | 3_1:+91278011 | Msa0387340:CDS |
| TATTCTCAACGAACAACAAA+GGG | 0.489010 | 3_1:+91276126 | Msa0387340:CDS |
| TATTGTCATGTCATTGAACC+TGG | 0.489334 | 3_1:+91278249 | Msa0387340:CDS |
| CTCATGAACAGCTCCAACAA+TGG | 0.489730 | 3_1:-91276725 | None:intergenic |
| TCCATTGAAGATCTTTCTCA+TGG | 0.490323 | 3_1:-91278319 | None:intergenic |
| CCCATGAGAAAGATCTTCAA+TGG | 0.491062 | 3_1:+91278318 | Msa0387340:CDS |
| GTTGTGAGACGTCGAGGAGG+TGG | 0.497052 | 3_1:-91277575 | None:intergenic |
| CATGTTGTATGGGGTGAGAA+GGG | 0.498945 | 3_1:-91275893 | None:intergenic |
| TAATCAGTATATCCAACAAC+AGG | 0.503211 | 3_1:-91278519 | None:intergenic |
| CTAAAACCAGATACCATAGT+TGG | 0.509794 | 3_1:-91276794 | None:intergenic |
| GGAAGAAGAGAATAAGAAAG+TGG | 0.510295 | 3_1:+91275849 | Msa0387340:CDS |
| GAAGCATGGAAACCCATTGT+TGG | 0.513600 | 3_1:+91276712 | Msa0387340:CDS |
| TGGTATTTGGACAAGAGAAC+AGG | 0.514806 | 3_1:+91276687 | Msa0387340:CDS |
| TCTTCCTAGAAGATTTGAGT+TGG | 0.518058 | 3_1:+91278449 | Msa0387340:CDS |
| TTTGATGGAGTGGAGATACA+TGG | 0.518838 | 3_1:+91277976 | Msa0387340:CDS |
| CATTCACAATAATCAGCATA+AGG | 0.519406 | 3_1:-91278159 | None:intergenic |
| CCTTCTCACCCCATACAACA+TGG | 0.541714 | 3_1:+91275894 | Msa0387340:CDS |
| CTTGATTGGGGAAGCCTCAG+GGG | 0.545878 | 3_1:+91276155 | Msa0387340:CDS |
| CGGATTTGGTAGCTTATGGA+AGG | 0.547082 | 3_1:+91278406 | Msa0387340:CDS |
| AACGACAGAGATGATGAGTA+TGG | 0.548461 | 3_1:+91278042 | Msa0387340:CDS |
| CCATTGAAGATCTTTCTCAT+GGG | 0.558552 | 3_1:-91278318 | None:intergenic |
| GGAACATTTATTGTTGCTGG+TGG | 0.563883 | 3_1:+91278339 | Msa0387340:CDS |
| CAAGAGAACAGGTGGAAGCA+TGG | 0.564931 | 3_1:+91276698 | Msa0387340:CDS |
| TGTTCTCTTGTCCAAATACC+AGG | 0.570132 | 3_1:-91276685 | None:intergenic |
| GAAAATTCAATCTGTCCCAC+AGG | 0.576865 | 3_1:+91275917 | Msa0387340:CDS |
| AAAGGGTGGCTTCTTGATTG+GGG | 0.577699 | 3_1:+91276143 | Msa0387340:CDS |
| TCGTTGTCGCTTCCCTCTAG+AGG | 0.579003 | 3_1:+91278080 | Msa0387340:CDS |
| TTATTCTCAACGAACAACAA+AGG | 0.581092 | 3_1:+91276125 | Msa0387340:CDS |
| TATGCTGATTATTGTGAATG+TGG | 0.581554 | 3_1:+91278162 | Msa0387340:CDS |
| ACTGCTTTCACAACCTCTAG+AGG | 0.583197 | 3_1:-91278093 | None:intergenic |
| AACAATGTGTTGGCCAGCAA+TGG | 0.583715 | 3_1:+91278381 | Msa0387340:CDS |
| TGAACAGGTTACCAACCAGA+TGG | 0.587082 | 3_1:+91277491 | Msa0387340:intron |
| AGTTGTCAATGACTTCAGAA+TGG | 0.592608 | 3_1:+91277613 | Msa0387340:CDS |
| GGTGGATACAATAGGACTGA+AGG | 0.596483 | 3_1:+91278357 | Msa0387340:CDS |
| GGGGTCTCAGACACTGCACA+AGG | 0.597651 | 3_1:+91276174 | Msa0387340:CDS |
| TTGGAGGCTGTCCATCTGGT+TGG | 0.600157 | 3_1:-91277502 | None:intergenic |
| TTGTGAGACGTCGAGGAGGT+GGG | 0.604708 | 3_1:-91277574 | None:intergenic |
| TGGTTGAGCAACGAAATTGA+AGG | 0.607262 | 3_1:-91276088 | None:intergenic |
| GACTGAAGGAAACAATGTGT+TGG | 0.609986 | 3_1:+91278371 | Msa0387340:CDS |
| ACAGAGATGATGAGTATGGT+GGG | 0.612337 | 3_1:+91278046 | Msa0387340:CDS |
| ATGTAGATGCCTAAAGCATG+AGG | 0.612576 | 3_1:-91278195 | None:intergenic |
| TCATGCTTTAGGCATCTACA+TGG | 0.616635 | 3_1:+91278197 | Msa0387340:CDS |
| GAGATTGGAGCTGACAAAGT+TGG | 0.616749 | 3_1:+91278123 | Msa0387340:CDS |
| CTGCTTTCACAACCTCTAGA+GGG | 0.620027 | 3_1:-91278092 | None:intergenic |
| GACAGAGATGATGAGTATGG+TGG | 0.624080 | 3_1:+91278045 | Msa0387340:CDS |
| TCATCGGTTGTGAGACGTCG+AGG | 0.630333 | 3_1:-91277581 | None:intergenic |
| ATGTTGTATGGGGTGAGAAG+GGG | 0.635447 | 3_1:-91275892 | None:intergenic |
| ATTGTCATGTCATTGAACCT+GGG | 0.637262 | 3_1:+91278250 | Msa0387340:CDS |
| TTGCACCTTTAACAAGAACA+AGG | 0.637602 | 3_1:+91276064 | Msa0387340:CDS |
| TCTCAACGAACAACAAAGGG+TGG | 0.642936 | 3_1:+91276129 | Msa0387340:CDS |
| AATAAGGCACTACAAAAGCA+AGG | 0.645729 | 3_1:+91277536 | Msa0387340:CDS |
| TGAAGGTACCCAAATACACC+TGG | 0.648170 | 3_1:+91276667 | Msa0387340:intron |
| TGCAGTGTCTGAGACCCCTG+AGG | 0.651692 | 3_1:-91276169 | None:intergenic |
| TATTTGGACAAGAGAACAGG+TGG | 0.653872 | 3_1:+91276690 | Msa0387340:CDS |
| GTTGGATGCCCAATTGAACA+AGG | 0.658985 | 3_1:+91278467 | Msa0387340:CDS |
| CTTCTCACCCCATACAACAT+GGG | 0.659177 | 3_1:+91275895 | Msa0387340:CDS |
| GGAGCTGTTCATGAGAAAGG+AGG | 0.677401 | 3_1:+91276733 | Msa0387340:CDS |
| TGTAGATGCCTAAAGCATGA+GGG | 0.695124 | 3_1:-91278194 | None:intergenic |
| TGTGTTGGCCAGCAATGGTG+CGG | 0.698432 | 3_1:+91278386 | Msa0387340:CDS |
| GAATAATAAAGAGCAGCATG+TGG | 0.702052 | 3_1:-91276108 | None:intergenic |
| TCGGTTGTGAGACGTCGAGG+AGG | 0.709608 | 3_1:-91277578 | None:intergenic |
| GGGTCTCAGACACTGCACAA+GGG | 0.738404 | 3_1:+91276175 | Msa0387340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGATTTTTTTAAAACTAAT+GGG | - | chr3_1:91276900-91276919 | None:intergenic | 10.0% |
| !!! | AAAGATTTTTTTAAAACTAA+TGG | - | chr3_1:91276901-91276920 | None:intergenic | 10.0% |
| !!! | ATTAGTTTTAAAAAAATCTT+TGG | + | chr3_1:91276900-91276919 | Msa0387340:intron | 10.0% |
| !!! | TTAGTTTTAAAAAAATCTTT+GGG | + | chr3_1:91276901-91276920 | Msa0387340:intron | 10.0% |
| !!! | TTACTTTTTAAAAAATCTTT+GGG | - | chr3_1:91277161-91277180 | None:intergenic | 10.0% |
| !!! | ATTACTTTTTAAAAAATCTT+TGG | - | chr3_1:91277162-91277181 | None:intergenic | 10.0% |
| !!! | AAAGATTTTTTAAAAAGTAA+TGG | + | chr3_1:91277161-91277180 | Msa0387340:intron | 10.0% |
| !!! | AAGATTTTTTAAAAAGTAAT+GGG | + | chr3_1:91277162-91277181 | Msa0387340:intron | 10.0% |
| !! | TATAAAACTAAAATAAATAC+AGG | + | chr3_1:91277952-91277971 | Msa0387340:intron | 10.0% |
| !! | TAAATAAATTATTTACCTGT+GGG | - | chr3_1:91275935-91275954 | None:intergenic | 15.0% |
| !!! | AAATAACATCTCTATTTTTT+TGG | + | chr3_1:91276267-91276286 | Msa0387340:intron | 15.0% |
| !!! | AATAACATCTCTATTTTTTT+GGG | + | chr3_1:91276268-91276287 | Msa0387340:intron | 15.0% |
| !!! | ATTGTAAAAATGTTTTTTGT+AGG | - | chr3_1:91276344-91276363 | None:intergenic | 15.0% |
| !!! | TACAAAAAACATTTTTACAA+TGG | + | chr3_1:91276343-91276362 | Msa0387340:intron | 15.0% |
| !!! | ACAAATTTTATTGTTAACAT+TGG | - | chr3_1:91276504-91276523 | None:intergenic | 15.0% |
| !!! | TGTGTTTTATTACATTAAAA+TGG | + | chr3_1:91277262-91277281 | Msa0387340:intron | 15.0% |
| !!! | GTGTTTTATTACATTAAAAT+GGG | + | chr3_1:91277263-91277282 | Msa0387340:intron | 15.0% |
| !! | TTCTTAGATAAAATAATTCT+TGG | + | chr3_1:91277386-91277405 | Msa0387340:intron | 15.0% |
| !! | TGCAATATCAATTTATTATT+TGG | + | chr3_1:91277671-91277690 | Msa0387340:intron | 15.0% |
| !! | CTAAATAAATTATTTACCTG+TGG | - | chr3_1:91275936-91275955 | None:intergenic | 20.0% |
| !! | ACAATGAATAGTTACAATAT+AGG | - | chr3_1:91276568-91276587 | None:intergenic | 20.0% |
| !! | TATTAAAAGACGAATTGTTT+AGG | + | chr3_1:91276944-91276963 | Msa0387340:intron | 20.0% |
| !! | ACTAAACAATTTACTTCAAA+TGG | + | chr3_1:91277337-91277356 | Msa0387340:intron | 20.0% |
| !! | ATAAAATTGTAATATCATGC+AGG | + | chr3_1:91277765-91277784 | Msa0387340:intron | 20.0% |
| !! | TAAAATTGTAATATCATGCA+GGG | + | chr3_1:91277766-91277785 | Msa0387340:intron | 20.0% |
| !!! | AAAATAAATACAGGTTTTGA+TGG | + | chr3_1:91277961-91277980 | Msa0387340:intron | 20.0% |
| !! | CCATCAAATAATCTAAAGTT+CGG | - | chr3_1:91277029-91277048 | None:intergenic | 25.0% |
| ! | TGGTTAATAAACTAAGAACT+CGG | + | chr3_1:91277357-91277376 | Msa0387340:intron | 25.0% |
| ! | AACGTTCTATCGATATATAT+AGG | - | chr3_1:91277469-91277488 | None:intergenic | 25.0% |
| ! | TGAATTTTCCCATGTTGTAT+GGG | - | chr3_1:91275906-91275925 | None:intergenic | 30.0% |
| ! | TTGAATTTTCCCATGTTGTA+TGG | - | chr3_1:91275907-91275926 | None:intergenic | 30.0% |
| AGTTCAATTCAATGTGATGA+GGG | - | chr3_1:91275970-91275989 | None:intergenic | 30.0% | |
| AAGTTCAATTCAATGTGATG+AGG | - | chr3_1:91275971-91275990 | None:intergenic | 30.0% | |
| !! | TTTTGTGTGTGTGTCTTATT+AGG | + | chr3_1:91276034-91276053 | Msa0387340:intron | 30.0% |
| TTATTCTCAACGAACAACAA+AGG | + | chr3_1:91276125-91276144 | Msa0387340:CDS | 30.0% | |
| TATTCTCAACGAACAACAAA+GGG | + | chr3_1:91276126-91276145 | Msa0387340:CDS | 30.0% | |
| TGAGCTTGAGAACAAAAATA+GGG | - | chr3_1:91276212-91276231 | None:intergenic | 30.0% | |
| ATGAGCTTGAGAACAAAAAT+AGG | - | chr3_1:91276213-91276232 | None:intergenic | 30.0% | |
| GTGTATATGTATGTAATGAC+TGG | + | chr3_1:91276367-91276386 | Msa0387340:intron | 30.0% | |
| TTAGATCAAATGAGATGCAA+TGG | + | chr3_1:91276467-91276486 | Msa0387340:intron | 30.0% | |
| !! | TCTCAATGTTTTTGAATCCT+TGG | + | chr3_1:91276640-91276659 | Msa0387340:intron | 30.0% |
| ! | TTTGAATCCTTGGTAATTGA+AGG | + | chr3_1:91276650-91276669 | Msa0387340:intron | 30.0% |
| GTTTATGTTATAATTTCCCC+TGG | + | chr3_1:91276835-91276854 | Msa0387340:intron | 30.0% | |
| ! | CGAATTGTTTAGGAGAATTT+TGG | + | chr3_1:91276954-91276973 | Msa0387340:intron | 30.0% |
| AAAAACTGATGACACAAACA+AGG | - | chr3_1:91276982-91277001 | None:intergenic | 30.0% | |
| CCGAACTTTAGATTATTTGA+TGG | + | chr3_1:91277026-91277045 | Msa0387340:intron | 30.0% | |
| ! | TGAAGTCATTGACAACTTTT+GGG | - | chr3_1:91277610-91277629 | None:intergenic | 30.0% |
| CTAATAATTACCTGCTTCTA+TGG | - | chr3_1:91277651-91277670 | None:intergenic | 30.0% | |
| CTCTAGTGTAATCTAATTAG+AGG | - | chr3_1:91277802-91277821 | None:intergenic | 30.0% | |
| CATTCACAATAATCAGCATA+AGG | - | chr3_1:91278162-91278181 | None:intergenic | 30.0% | |
| ! | TATGCTGATTATTGTGAATG+TGG | + | chr3_1:91278162-91278181 | Msa0387340:CDS | 30.0% |
| GCTAAGTCATTAAGTGAATT+AGG | + | chr3_1:91278219-91278238 | Msa0387340:CDS | 30.0% | |
| AATGGAACATTTATTGTTGC+TGG | + | chr3_1:91278336-91278355 | Msa0387340:CDS | 30.0% | |
| TAATCAGTATATCCAACAAC+AGG | - | chr3_1:91278522-91278541 | None:intergenic | 30.0% | |
| !! | CTAGTAGCATTTTCAAGAAA+TGG | - | chr3_1:91278546-91278565 | None:intergenic | 30.0% |
| GGAAGAAGAGAATAAGAAAG+TGG | + | chr3_1:91275849-91275868 | Msa0387340:CDS | 35.0% | |
| GAGAATAAGAAAGTGGTTGA+AGG | + | chr3_1:91275856-91275875 | Msa0387340:CDS | 35.0% | |
| ! | GAATTTTCCCATGTTGTATG+GGG | - | chr3_1:91275905-91275924 | None:intergenic | 35.0% |
| TTGCACCTTTAACAAGAACA+AGG | + | chr3_1:91276064-91276083 | Msa0387340:CDS | 35.0% | |
| AAGGACCTTGTTCTTGTTAA+AGG | - | chr3_1:91276072-91276091 | None:intergenic | 35.0% | |
| GAATAATAAAGAGCAGCATG+TGG | - | chr3_1:91276111-91276130 | None:intergenic | 35.0% | |
| GAGAACAAAAATAGGGTAGT+TGG | - | chr3_1:91276205-91276224 | None:intergenic | 35.0% | |
| TCCAAATACCAGGTGTATTT+GGG | - | chr3_1:91276678-91276697 | None:intergenic | 35.0% | |
| ! | GCATATTCTTTTGTCAGCTT+TGG | + | chr3_1:91276755-91276774 | Msa0387340:CDS | 35.0% |
| CTAAAACCAGATACCATAGT+TGG | - | chr3_1:91276797-91276816 | None:intergenic | 35.0% | |
| TACTTGCGTTAGACAATTCT+TGG | - | chr3_1:91277081-91277100 | None:intergenic | 35.0% | |
| AGAATTGTCTAACGCAAGTA+AGG | + | chr3_1:91277081-91277100 | Msa0387340:intron | 35.0% | |
| ! | TCGATAGAACGTTTTTGAAC+AGG | + | chr3_1:91277476-91277495 | Msa0387340:intron | 35.0% |
| TTATTTGTGCTTGAGATTGG+AGG | - | chr3_1:91277521-91277540 | None:intergenic | 35.0% | |
| TCCAATCTCAAGCACAAATA+AGG | + | chr3_1:91277520-91277539 | Msa0387340:CDS | 35.0% | |
| ! | AATAAGGCACTACAAAAGCA+AGG | + | chr3_1:91277536-91277555 | Msa0387340:CDS | 35.0% |
| !!! | GACAACTTTTGGGATTTCAT+CGG | - | chr3_1:91277600-91277619 | None:intergenic | 35.0% |
| ! | CTGAAGTCATTGACAACTTT+TGG | - | chr3_1:91277611-91277630 | None:intergenic | 35.0% |
| AGTTGTCAATGACTTCAGAA+TGG | + | chr3_1:91277613-91277632 | Msa0387340:CDS | 35.0% | |
| ACATCATTGCTATGTATGCA+GGG | - | chr3_1:91277830-91277849 | None:intergenic | 35.0% | |
| !! | AAATACAGGTTTTGATGGAG+TGG | + | chr3_1:91277966-91277985 | Msa0387340:intron | 35.0% |
| CTTGCTTGATCAATTCCTAA+AGG | + | chr3_1:91278011-91278030 | Msa0387340:CDS | 35.0% | |
| ! | AAAGCAGTTGTTGATGAGAT+TGG | + | chr3_1:91278108-91278127 | Msa0387340:CDS | 35.0% |
| TATTGTCATGTCATTGAACC+TGG | + | chr3_1:91278249-91278268 | Msa0387340:CDS | 35.0% | |
| ATTGTCATGTCATTGAACCT+GGG | + | chr3_1:91278250-91278269 | Msa0387340:CDS | 35.0% | |
| !! | GGTGTCACATTTTTCAAACA+TGG | - | chr3_1:91278283-91278302 | None:intergenic | 35.0% |
| CCATTGAAGATCTTTCTCAT+GGG | - | chr3_1:91278321-91278340 | None:intergenic | 35.0% | |
| TCCATTGAAGATCTTTCTCA+TGG | - | chr3_1:91278322-91278341 | None:intergenic | 35.0% | |
| ! | TCAAATCTTCTAGGAAGATC+TGG | - | chr3_1:91278447-91278466 | None:intergenic | 35.0% |
| TCTTCCTAGAAGATTTGAGT+TGG | + | chr3_1:91278449-91278468 | Msa0387340:CDS | 35.0% | |
| !! | CTTATCAGCCTTGTTCAATT+GGG | - | chr3_1:91278478-91278497 | None:intergenic | 35.0% |
| !! | TCTTATCAGCCTTGTTCAAT+TGG | - | chr3_1:91278479-91278498 | None:intergenic | 35.0% |
| ATATCCAACAACAGGATCAT+TGG | - | chr3_1:91278514-91278533 | None:intergenic | 35.0% | |
| GAAAATTCAATCTGTCCCAC+AGG | + | chr3_1:91275917-91275936 | Msa0387340:CDS | 40.0% | |
| ATTCAATGTGATGAGGGTCT+AGG | - | chr3_1:91275964-91275983 | None:intergenic | 40.0% | |
| TGGTTGAGCAACGAAATTGA+AGG | - | chr3_1:91276091-91276110 | None:intergenic | 40.0% | |
| TTGGGTACCTTCAATTACCA+AGG | - | chr3_1:91276660-91276679 | None:intergenic | 40.0% | |
| ACCCAAATACACCTGGTATT+TGG | + | chr3_1:91276674-91276693 | Msa0387340:CDS | 40.0% | |
| GTCCAAATACCAGGTGTATT+TGG | - | chr3_1:91276679-91276698 | None:intergenic | 40.0% | |
| TGTTCTCTTGTCCAAATACC+AGG | - | chr3_1:91276688-91276707 | None:intergenic | 40.0% | |
| TGGTATTTGGACAAGAGAAC+AGG | + | chr3_1:91276687-91276706 | Msa0387340:CDS | 40.0% | |
| TATTTGGACAAGAGAACAGG+TGG | + | chr3_1:91276690-91276709 | Msa0387340:CDS | 40.0% | |
| TCATGAACAGCTCCAACAAT+GGG | - | chr3_1:91276727-91276746 | None:intergenic | 40.0% | |
| !! | CCGTATTGTTTCTAATCCAG+GGG | - | chr3_1:91276854-91276873 | None:intergenic | 40.0% |
| ! | CCCCTGGATTAGAAACAATA+CGG | + | chr3_1:91276851-91276870 | Msa0387340:intron | 40.0% |
| !! | CCCGTATTGTTTCTAATCCA+GGG | - | chr3_1:91276855-91276874 | None:intergenic | 40.0% |
| ! | CCCTGGATTAGAAACAATAC+GGG | + | chr3_1:91276852-91276871 | Msa0387340:intron | 40.0% |
| GTCAGATTTCGCTTATCATG+TGG | + | chr3_1:91277003-91277022 | Msa0387340:intron | 40.0% | |
| !! | GCCTTATTTGTGCTTGAGAT+TGG | - | chr3_1:91277524-91277543 | None:intergenic | 40.0% |
| ! | ACCTGCTTCTATGGCATTTT+TGG | - | chr3_1:91277642-91277661 | None:intergenic | 40.0% |
| CACATCATTGCTATGTATGC+AGG | - | chr3_1:91277831-91277850 | None:intergenic | 40.0% | |
| TTTGATGGAGTGGAGATACA+TGG | + | chr3_1:91277976-91277995 | Msa0387340:CDS | 40.0% | |
| TGTCGTTCACTTTGTCCTTT+AGG | - | chr3_1:91278029-91278048 | None:intergenic | 40.0% | |
| AACGACAGAGATGATGAGTA+TGG | + | chr3_1:91278042-91278061 | Msa0387340:CDS | 40.0% | |
| ACAGAGATGATGAGTATGGT+GGG | + | chr3_1:91278046-91278065 | Msa0387340:CDS | 40.0% | |
| TGTAGATGCCTAAAGCATGA+GGG | - | chr3_1:91278197-91278216 | None:intergenic | 40.0% | |
| ATGTAGATGCCTAAAGCATG+AGG | - | chr3_1:91278198-91278217 | None:intergenic | 40.0% | |
| ! | TCATGCTTTAGGCATCTACA+TGG | + | chr3_1:91278197-91278216 | Msa0387340:CDS | 40.0% |
| GATCTTTCTCATGGGCATTA+AGG | - | chr3_1:91278313-91278332 | None:intergenic | 40.0% | |
| CCCATGAGAAAGATCTTCAA+TGG | + | chr3_1:91278318-91278337 | Msa0387340:CDS | 40.0% | |
| GGAACATTTATTGTTGCTGG+TGG | + | chr3_1:91278339-91278358 | Msa0387340:CDS | 40.0% | |
| ! | TTGTTGCTGGTGGATACAAT+AGG | + | chr3_1:91278349-91278368 | Msa0387340:CDS | 40.0% |
| GACTGAAGGAAACAATGTGT+TGG | + | chr3_1:91278371-91278390 | Msa0387340:CDS | 40.0% | |
| ! | AGCTTATGGAAGGCTCTTTT+TGG | + | chr3_1:91278416-91278435 | Msa0387340:CDS | 40.0% |
| GCATCCAACTCAAATCTTCT+AGG | - | chr3_1:91278456-91278475 | None:intergenic | 40.0% | |
| TACACCAATGATCCTGTTGT+TGG | + | chr3_1:91278507-91278526 | Msa0387340:CDS | 40.0% | |
| ATGTTGTATGGGGTGAGAAG+GGG | - | chr3_1:91275895-91275914 | None:intergenic | 45.0% | |
| CATGTTGTATGGGGTGAGAA+GGG | - | chr3_1:91275896-91275915 | None:intergenic | 45.0% | |
| CTTCTCACCCCATACAACAT+GGG | + | chr3_1:91275895-91275914 | Msa0387340:CDS | 45.0% | |
| TCTCAACGAACAACAAAGGG+TGG | + | chr3_1:91276129-91276148 | Msa0387340:CDS | 45.0% | |
| ACAAAGGGTGGCTTCTTGAT+TGG | + | chr3_1:91276141-91276160 | Msa0387340:CDS | 45.0% | |
| CAAAGGGTGGCTTCTTGATT+GGG | + | chr3_1:91276142-91276161 | Msa0387340:CDS | 45.0% | |
| AAAGGGTGGCTTCTTGATTG+GGG | + | chr3_1:91276143-91276162 | Msa0387340:CDS | 45.0% | |
| !! | TGAAGGTACCCAAATACACC+TGG | + | chr3_1:91276667-91276686 | Msa0387340:intron | 45.0% |
| GAAGCATGGAAACCCATTGT+TGG | + | chr3_1:91276712-91276731 | Msa0387340:CDS | 45.0% | |
| CTCATGAACAGCTCCAACAA+TGG | - | chr3_1:91276728-91276747 | None:intergenic | 45.0% | |
| GTTGGAGCTGTTCATGAGAA+AGG | + | chr3_1:91276730-91276749 | Msa0387340:CDS | 45.0% | |
| GAGTGTCCAACTATGGTATC+TGG | + | chr3_1:91276788-91276807 | Msa0387340:intron | 45.0% | |
| !! | GCCCGTATTGTTTCTAATCC+AGG | - | chr3_1:91276856-91276875 | None:intergenic | 45.0% |
| TGAACAGGTTACCAACCAGA+TGG | + | chr3_1:91277491-91277510 | Msa0387340:intron | 45.0% | |
| GCCAAAAATGCCATAGAAGC+AGG | + | chr3_1:91277638-91277657 | Msa0387340:CDS | 45.0% | |
| GTGGAGATACATGGAGCTAA+TGG | + | chr3_1:91277985-91278004 | Msa0387340:CDS | 45.0% | |
| GACAGAGATGATGAGTATGG+TGG | + | chr3_1:91278045-91278064 | Msa0387340:CDS | 45.0% | |
| CTGCTTTCACAACCTCTAGA+GGG | - | chr3_1:91278095-91278114 | None:intergenic | 45.0% | |
| ACTGCTTTCACAACCTCTAG+AGG | - | chr3_1:91278096-91278115 | None:intergenic | 45.0% | |
| GAGATTGGAGCTGACAAAGT+TGG | + | chr3_1:91278123-91278142 | Msa0387340:CDS | 45.0% | |
| GACTCTAACCCTCATGCTTT+AGG | + | chr3_1:91278186-91278205 | Msa0387340:CDS | 45.0% | |
| CATGGGCATTAAGGACTCAT+TGG | - | chr3_1:91278304-91278323 | None:intergenic | 45.0% | |
| GGTGGATACAATAGGACTGA+AGG | + | chr3_1:91278357-91278376 | Msa0387340:CDS | 45.0% | |
| ! | AACAATGTGTTGGCCAGCAA+TGG | + | chr3_1:91278381-91278400 | Msa0387340:CDS | 45.0% |
| ! | CGGATTTGGTAGCTTATGGA+AGG | + | chr3_1:91278406-91278425 | Msa0387340:CDS | 45.0% |
| GTTGGATGCCCAATTGAACA+AGG | + | chr3_1:91278467-91278486 | Msa0387340:CDS | 45.0% | |
| CCATGTTGTATGGGGTGAGA+AGG | - | chr3_1:91275897-91275916 | None:intergenic | 50.0% | |
| CCTTCTCACCCCATACAACA+TGG | + | chr3_1:91275894-91275913 | Msa0387340:CDS | 50.0% | |
| TTCTTGATTGGGGAAGCCTC+AGG | + | chr3_1:91276153-91276172 | Msa0387340:CDS | 50.0% | |
| TCTTGATTGGGGAAGCCTCA+GGG | + | chr3_1:91276154-91276173 | Msa0387340:CDS | 50.0% | |
| CAAGAGAACAGGTGGAAGCA+TGG | + | chr3_1:91276698-91276717 | Msa0387340:CDS | 50.0% | |
| GGAGCTGTTCATGAGAAAGG+AGG | + | chr3_1:91276733-91276752 | Msa0387340:CDS | 50.0% | |
| !! | TTTTGTCAGCTTTGGCACGC+TGG | + | chr3_1:91276763-91276782 | Msa0387340:CDS | 50.0% |
| !! | GCTGGAAGAGTGTCCAACTA+TGG | + | chr3_1:91276781-91276800 | Msa0387340:CDS | 50.0% |
| TCAAACATGGTGCACATCCC+AGG | - | chr3_1:91278270-91278289 | None:intergenic | 50.0% | |
| TACCAAATCCGCACCATTGC+TGG | - | chr3_1:91278397-91278416 | None:intergenic | 50.0% | |
| ! | GGTGCGGATTTGGTAGCTTA+TGG | + | chr3_1:91278402-91278421 | Msa0387340:CDS | 50.0% |
| CTTGATTGGGGAAGCCTCAG+GGG | + | chr3_1:91276155-91276174 | Msa0387340:CDS | 55.0% | |
| GGGTCTCAGACACTGCACAA+GGG | + | chr3_1:91276175-91276194 | Msa0387340:CDS | 55.0% | |
| TTGGAGGCTGTCCATCTGGT+TGG | - | chr3_1:91277505-91277524 | None:intergenic | 55.0% | |
| GAGATTGGAGGCTGTCCATC+TGG | - | chr3_1:91277509-91277528 | None:intergenic | 55.0% | |
| TTGTGAGACGTCGAGGAGGT+GGG | - | chr3_1:91277577-91277596 | None:intergenic | 55.0% | |
| ! | TCATCGGTTGTGAGACGTCG+AGG | - | chr3_1:91277584-91277603 | None:intergenic | 55.0% |
| ! | TCGTTGTCGCTTCCCTCTAG+AGG | + | chr3_1:91278080-91278099 | Msa0387340:CDS | 55.0% |
| ! | TGTGTTGGCCAGCAATGGTG+CGG | + | chr3_1:91278386-91278405 | Msa0387340:CDS | 55.0% |
| ! | TGCAGTGTCTGAGACCCCTG+AGG | - | chr3_1:91276172-91276191 | None:intergenic | 60.0% |
| GGGGTCTCAGACACTGCACA+AGG | + | chr3_1:91276174-91276193 | Msa0387340:CDS | 60.0% | |
| GTTGTGAGACGTCGAGGAGG+TGG | - | chr3_1:91277578-91277597 | None:intergenic | 60.0% | |
| TCGGTTGTGAGACGTCGAGG+AGG | - | chr3_1:91277581-91277600 | None:intergenic | 60.0% | |
| GGCCAGCAATGGTGCGGATT+TGG | + | chr3_1:91278392-91278411 | Msa0387340:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 91275847 | 91278569 | 91275847 | ID=Msa0387340;Name=Msa0387340 |
| chr3_1 | mRNA | 91275847 | 91278569 | 91275847 | ID=Msa0387340-mRNA-1;Parent=Msa0387340;Name=Msa0387340-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|5|0|373 |
| chr3_1 | exon | 91275847 | 91275938 | 91275847 | ID=Msa0387340-mRNA-1:exon:25387;Parent=Msa0387340-mRNA-1 |
| chr3_1 | exon | 91276056 | 91276196 | 91276056 | ID=Msa0387340-mRNA-1:exon:25388;Parent=Msa0387340-mRNA-1 |
| chr3_1 | exon | 91276672 | 91276802 | 91276672 | ID=Msa0387340-mRNA-1:exon:25389;Parent=Msa0387340-mRNA-1 |
| chr3_1 | exon | 91277498 | 91277659 | 91277498 | ID=Msa0387340-mRNA-1:exon:25390;Parent=Msa0387340-mRNA-1 |
| chr3_1 | exon | 91277974 | 91278569 | 91277974 | ID=Msa0387340-mRNA-1:exon:25391;Parent=Msa0387340-mRNA-1 |
| chr3_1 | CDS | 91275847 | 91275938 | 91275847 | ID=Msa0387340-mRNA-1:cds;Parent=Msa0387340-mRNA-1 |
| chr3_1 | CDS | 91276056 | 91276196 | 91276056 | ID=Msa0387340-mRNA-1:cds;Parent=Msa0387340-mRNA-1 |
| chr3_1 | CDS | 91276672 | 91276802 | 91276672 | ID=Msa0387340-mRNA-1:cds;Parent=Msa0387340-mRNA-1 |
| chr3_1 | CDS | 91277498 | 91277659 | 91277498 | ID=Msa0387340-mRNA-1:cds;Parent=Msa0387340-mRNA-1 |
| chr3_1 | CDS | 91277974 | 91278569 | 91277974 | ID=Msa0387340-mRNA-1:cds;Parent=Msa0387340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
