Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173540 | XP_013462297.1 | 96.703 | 364 | 11 | 1 | 10 | 372 | 3 | 366 | 0.0 | 736 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173540 | sp|Q8LAH7|OPR1_ARATH | 68.852 | 366 | 109 | 1 | 10 | 370 | 5 | 370 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173540 | A0A072V3D1 | 96.703 | 364 | 11 | 1 | 10 | 372 | 3 | 366 | 0.0 | 736 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0661670 | Msa1173540 | 0.914411 | 1.979040e-84 | -8.615850e-47 |
| Msa0121320 | Msa1173540 | 0.801401 | 9.162741e-49 | -8.615850e-47 |
| Msa0186270 | Msa1173540 | 0.917690 | 3.901892e-86 | -8.615850e-47 |
| Msa0386080 | Msa1173540 | 0.838949 | 2.121885e-57 | -8.615850e-47 |
| Msa0387340 | Msa1173540 | 0.980920 | 2.395854e-151 | -8.615850e-47 |
| Msa1040330 | Msa1173540 | 0.817863 | 2.644516e-52 | -8.615850e-47 |
| Msa1165860 | Msa1173540 | 0.802144 | 6.450433e-49 | -8.615850e-47 |
| Msa0871420 | Msa1173540 | 0.811359 | 7.281810e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173540 | MtrunA17_Chr3g0144001 | 96.703 | 364 | 11 | 1 | 10 | 372 | 3 | 366 | 0.0 | 736 |
| Msa1173540 | MtrunA17_Chr5g0394891 | 70.492 | 366 | 103 | 1 | 9 | 369 | 4 | 369 | 0.0 | 555 |
| Msa1173540 | MtrunA17_Chr5g0394771 | 70.986 | 355 | 102 | 1 | 15 | 369 | 38 | 391 | 0.0 | 545 |
| Msa1173540 | MtrunA17_Chr5g0394861 | 69.613 | 362 | 103 | 2 | 15 | 369 | 10 | 371 | 0.0 | 534 |
| Msa1173540 | MtrunA17_Chr5g0394751 | 69.577 | 355 | 107 | 1 | 15 | 369 | 6 | 359 | 0.0 | 531 |
| Msa1173540 | MtrunA17_Chr5g0395841 | 67.688 | 359 | 111 | 1 | 15 | 368 | 12 | 370 | 0.0 | 531 |
| Msa1173540 | MtrunA17_Chr5g0394841 | 67.680 | 362 | 110 | 2 | 15 | 369 | 10 | 371 | 0.0 | 525 |
| Msa1173540 | MtrunA17_Chr5g0394811 | 66.389 | 360 | 116 | 2 | 15 | 369 | 119 | 478 | 0.0 | 515 |
| Msa1173540 | MtrunA17_Chr5g0394811 | 79.208 | 101 | 21 | 0 | 23 | 123 | 1 | 101 | 8.05e-51 | 176 |
| Msa1173540 | MtrunA17_Chr4g0070561 | 53.514 | 370 | 154 | 5 | 17 | 368 | 19 | 388 | 8.26e-138 | 398 |
| Msa1173540 | MtrunA17_Chr5g0394791 | 64.072 | 167 | 49 | 2 | 15 | 176 | 9 | 169 | 7.77e-71 | 220 |
| Msa1173540 | MtrunA17_Chr5g0394801 | 54.255 | 188 | 59 | 1 | 174 | 361 | 25 | 185 | 4.76e-66 | 209 |
| Msa1173540 | MtrunA17_Chr3g0130471 | 72.093 | 43 | 12 | 0 | 194 | 236 | 1 | 43 | 4.88e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1173540 | AT1G76680.1 | 68.852 | 366 | 109 | 1 | 10 | 370 | 5 | 370 | 0.0 | 536 |
| Msa1173540 | AT1G76690.1 | 67.760 | 366 | 113 | 1 | 10 | 370 | 7 | 372 | 0.0 | 535 |
| Msa1173540 | AT1G76680.2 | 64.450 | 391 | 109 | 2 | 10 | 370 | 5 | 395 | 0.0 | 523 |
| Msa1173540 | AT1G09400.1 | 66.154 | 325 | 109 | 1 | 23 | 347 | 1 | 324 | 3.62e-164 | 462 |
| Msa1173540 | AT2G06050.2 | 52.139 | 374 | 157 | 4 | 17 | 368 | 12 | 385 | 6.17e-136 | 393 |
| Msa1173540 | AT2G06050.1 | 52.139 | 374 | 157 | 4 | 17 | 368 | 12 | 385 | 6.17e-136 | 393 |
| Msa1173540 | AT2G06050.3 | 52.139 | 374 | 157 | 4 | 17 | 368 | 12 | 385 | 6.17e-136 | 393 |
| Msa1173540 | AT1G09400.2 | 67.170 | 265 | 86 | 1 | 83 | 347 | 2 | 265 | 6.65e-134 | 383 |
| Msa1173540 | AT1G17990.1 | 65.251 | 259 | 88 | 2 | 9 | 266 | 1 | 258 | 1.96e-128 | 370 |
| Msa1173540 | AT1G18020.1 | 65.251 | 259 | 88 | 2 | 9 | 266 | 1 | 258 | 1.96e-128 | 370 |
| Msa1173540 | AT1G17990.2 | 62.548 | 259 | 87 | 3 | 9 | 266 | 1 | 250 | 1.08e-119 | 347 |
Find 100 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCAAATACCAGGTGTATT+TGG | 0.127154 | 8_1:+3970236 | None:intergenic |
| CTGAAGTCATTGACAACTTT+TGG | 0.134544 | 8_1:+3969304 | None:intergenic |
| AAGGACCTTGTTCTTGTTAA+AGG | 0.178211 | 8_1:+3970843 | None:intergenic |
| TGTCGTTCACTTTGTCCTTT+AGG | 0.228951 | 8_1:+3968886 | None:intergenic |
| ACCCAAATACACCTGGTATT+TGG | 0.251049 | 8_1:-3970238 | Msa1173540:CDS |
| GATCTTTCTCATGGGCATTA+AGG | 0.258096 | 8_1:+3968602 | None:intergenic |
| CTAATAATTACCTGCTTCTA+TGG | 0.268887 | 8_1:+3969264 | None:intergenic |
| TTCTTGATTGGGGAAGCCTC+AGG | 0.303380 | 8_1:-3970759 | Msa1173540:CDS |
| TCCAATCTCAAGCACAAATA+AGG | 0.308704 | 8_1:-3969392 | Msa1173540:CDS |
| TCTTATCAGCCTTGTTCAAT+TGG | 0.321623 | 8_1:+3968436 | None:intergenic |
| GGTGCGGATTTGGTAGCTTA+TGG | 0.322401 | 8_1:-3968510 | Msa1173540:CDS |
| TACCAAATCCGCACCATTGC+TGG | 0.328132 | 8_1:+3968518 | None:intergenic |
| CAAAGGGTGGCTTCTTGATT+GGG | 0.332102 | 8_1:-3970770 | Msa1173540:CDS |
| ACAAAGGGTGGCTTCTTGAT+TGG | 0.332916 | 8_1:-3970771 | Msa1173540:CDS |
| GCATCCAACTCAAATCTTCT+AGG | 0.344741 | 8_1:+3968459 | None:intergenic |
| AATGGAACATTTATTGTTGC+TGG | 0.345581 | 8_1:-3968576 | Msa1173540:CDS |
| TCCAAATACCAGGTGTATTT+GGG | 0.345635 | 8_1:+3970237 | None:intergenic |
| GCTAAGTCATTAAGTGAATT+AGG | 0.356165 | 8_1:-3968693 | Msa1173540:CDS |
| GCCTTATTTGTGCTTGAGAT+TGG | 0.359941 | 8_1:+3969391 | None:intergenic |
| GGCCAGCAATGGTGCGGATT+TGG | 0.384528 | 8_1:-3968520 | Msa1173540:CDS |
| TACACCAATGATCCTGTTGT+TGG | 0.393076 | 8_1:-3968405 | Msa1173540:CDS |
| GAGATTGGAGGCTGTCCATC+TGG | 0.397247 | 8_1:+3969406 | None:intergenic |
| CTTATCAGCCTTGTTCAATT+GGG | 0.402003 | 8_1:+3968437 | None:intergenic |
| TCAAATCTTCTAGGAAGATC+TGG | 0.403955 | 8_1:+3968468 | None:intergenic |
| GACTCTAACCCTCATGCTTT+AGG | 0.410599 | 8_1:-3968726 | Msa1173540:CDS |
| TTGTTGCTGGTGGATACAAT+AGG | 0.419806 | 8_1:-3968563 | Msa1173540:CDS |
| CATGGGCATTAAGGACTCAT+TGG | 0.438978 | 8_1:+3968611 | None:intergenic |
| GTGGAGATACATGGAGCTAA+TGG | 0.442093 | 8_1:-3968927 | Msa1173540:CDS |
| AAAGCAGTTGTTGATGAGAT+TGG | 0.442364 | 8_1:-3968804 | Msa1173540:CDS |
| TCTTGATTGGGGAAGCCTCA+GGG | 0.444023 | 8_1:-3970758 | Msa1173540:CDS |
| GAGAATAAGAAAGTGGTTGA+AGG | 0.446077 | 8_1:-3971056 | Msa1173540:CDS |
| CCATGTTGTATGGGGTGAGA+AGG | 0.460955 | 8_1:+3971018 | None:intergenic |
| ATATCCAACAACAGGATCAT+TGG | 0.464074 | 8_1:+3968401 | None:intergenic |
| TTATTTGTGCTTGAGATTGG+AGG | 0.468685 | 8_1:+3969394 | None:intergenic |
| GCTGGAAGAGTGTCCAACTA+TGG | 0.469322 | 8_1:-3970131 | Msa1173540:intron |
| GTTGGAGCTGTTCATGAGAA+AGG | 0.473716 | 8_1:-3970182 | Msa1173540:CDS |
| TCATGAACAGCTCCAACAAT+GGG | 0.476202 | 8_1:+3970188 | None:intergenic |
| TCAAACATGGTGCACATCCC+AGG | 0.477008 | 8_1:+3968645 | None:intergenic |
| CTTGCTTGATCAATTCCTAA+AGG | 0.484914 | 8_1:-3968901 | Msa1173540:CDS |
| TATTCTCAACGAACAACAAA+GGG | 0.489010 | 8_1:-3970786 | Msa1173540:CDS |
| TATTGTCATGTCATTGAACC+TGG | 0.489334 | 8_1:-3968663 | Msa1173540:CDS |
| CTCATGAACAGCTCCAACAA+TGG | 0.489730 | 8_1:+3970187 | None:intergenic |
| TCCATTGAAGATCTTTCTCA+TGG | 0.490323 | 8_1:+3968593 | None:intergenic |
| CCCATGAGAAAGATCTTCAA+TGG | 0.491062 | 8_1:-3968594 | Msa1173540:CDS |
| GTTGTGAGACGTCGAGGAGG+TGG | 0.497052 | 8_1:+3969337 | None:intergenic |
| CATGTTGTATGGGGTGAGAA+GGG | 0.498945 | 8_1:+3971019 | None:intergenic |
| TAATCAGTATATCCAACAAC+AGG | 0.503211 | 8_1:+3968393 | None:intergenic |
| CTAAAACCAGATACCATAGT+TGG | 0.509794 | 8_1:+3970118 | None:intergenic |
| GGAAGAAGAGAATAAGAAAG+TGG | 0.510295 | 8_1:-3971063 | Msa1173540:CDS |
| GAAGCATGGAAACCCATTGT+TGG | 0.513600 | 8_1:-3970200 | Msa1173540:CDS |
| TGGTATTTGGACAAGAGAAC+AGG | 0.514806 | 8_1:-3970225 | Msa1173540:CDS |
| TCTTCCTAGAAGATTTGAGT+TGG | 0.518058 | 8_1:-3968463 | Msa1173540:CDS |
| TTTGATGGAGTGGAGATACA+TGG | 0.518838 | 8_1:-3968936 | Msa1173540:CDS |
| CATTCACAATAATCAGCATA+AGG | 0.519406 | 8_1:+3968753 | None:intergenic |
| CCTTCTCACCCCATACAACA+TGG | 0.541714 | 8_1:-3971018 | Msa1173540:CDS |
| CTTGATTGGGGAAGCCTCAG+GGG | 0.545878 | 8_1:-3970757 | Msa1173540:CDS |
| CGGATTTGGTAGCTTATGGA+AGG | 0.547082 | 8_1:-3968506 | Msa1173540:CDS |
| AACGACAGAGATGATGAGTA+TGG | 0.548461 | 8_1:-3968870 | Msa1173540:CDS |
| CCATTGAAGATCTTTCTCAT+GGG | 0.558552 | 8_1:+3968594 | None:intergenic |
| GGAACATTTATTGTTGCTGG+TGG | 0.563883 | 8_1:-3968573 | Msa1173540:CDS |
| CAAGAGAACAGGTGGAAGCA+TGG | 0.564931 | 8_1:-3970214 | Msa1173540:CDS |
| TGTTCTCTTGTCCAAATACC+AGG | 0.570132 | 8_1:+3970227 | None:intergenic |
| GAAAATTCAATCTGTCCCAC+AGG | 0.576865 | 8_1:-3970995 | Msa1173540:intron |
| AAAGGGTGGCTTCTTGATTG+GGG | 0.577699 | 8_1:-3970769 | Msa1173540:CDS |
| TCGTTGTCGCTTCCCTCTAG+AGG | 0.579003 | 8_1:-3968832 | Msa1173540:CDS |
| TTATTCTCAACGAACAACAA+AGG | 0.581092 | 8_1:-3970787 | Msa1173540:CDS |
| TATGCTGATTATTGTGAATG+TGG | 0.581554 | 8_1:-3968750 | Msa1173540:CDS |
| ACTGCTTTCACAACCTCTAG+AGG | 0.583197 | 8_1:+3968819 | None:intergenic |
| AACAATGTGTTGGCCAGCAA+TGG | 0.583715 | 8_1:-3968531 | Msa1173540:CDS |
| TGAACAGGTTACCAACCAGA+TGG | 0.587082 | 8_1:-3969421 | Msa1173540:intron |
| AGTTGTCAATGACTTCAGAA+TGG | 0.592608 | 8_1:-3969299 | Msa1173540:CDS |
| GGTGGATACAATAGGACTGA+AGG | 0.596483 | 8_1:-3968555 | Msa1173540:CDS |
| GGGGTCTCAGACACTGCACA+AGG | 0.597651 | 8_1:-3970738 | Msa1173540:CDS |
| TTGGAGGCTGTCCATCTGGT+TGG | 0.600157 | 8_1:+3969410 | None:intergenic |
| TTGTGAGACGTCGAGGAGGT+GGG | 0.604708 | 8_1:+3969338 | None:intergenic |
| TGGTTGAGCAACGAAATTGA+AGG | 0.607262 | 8_1:+3970824 | None:intergenic |
| GACTGAAGGAAACAATGTGT+TGG | 0.609986 | 8_1:-3968541 | Msa1173540:CDS |
| ACAGAGATGATGAGTATGGT+GGG | 0.612337 | 8_1:-3968866 | Msa1173540:CDS |
| ATGTAGATGCCTAAAGCATG+AGG | 0.612576 | 8_1:+3968717 | None:intergenic |
| TCATGCTTTAGGCATCTACA+TGG | 0.616635 | 8_1:-3968715 | Msa1173540:CDS |
| GAGATTGGAGCTGACAAAGT+TGG | 0.616749 | 8_1:-3968789 | Msa1173540:CDS |
| CTGCTTTCACAACCTCTAGA+GGG | 0.620027 | 8_1:+3968820 | None:intergenic |
| GACAGAGATGATGAGTATGG+TGG | 0.624080 | 8_1:-3968867 | Msa1173540:CDS |
| TCATCGGTTGTGAGACGTCG+AGG | 0.630333 | 8_1:+3969331 | None:intergenic |
| ATGTTGTATGGGGTGAGAAG+GGG | 0.635447 | 8_1:+3971020 | None:intergenic |
| ATTGTCATGTCATTGAACCT+GGG | 0.637262 | 8_1:-3968662 | Msa1173540:CDS |
| TTGCACCTTTAACAAGAACA+AGG | 0.637602 | 8_1:-3970848 | Msa1173540:CDS |
| TCTCAACGAACAACAAAGGG+TGG | 0.642936 | 8_1:-3970783 | Msa1173540:CDS |
| AATAAGGCACTACAAAAGCA+AGG | 0.645729 | 8_1:-3969376 | Msa1173540:CDS |
| TGAAGGTACCCAAATACACC+TGG | 0.648170 | 8_1:-3970245 | Msa1173540:intron |
| TGCAGTGTCTGAGACCCCTG+AGG | 0.651692 | 8_1:+3970743 | None:intergenic |
| TATTTGGACAAGAGAACAGG+TGG | 0.653872 | 8_1:-3970222 | Msa1173540:CDS |
| GTTGGATGCCCAATTGAACA+AGG | 0.658985 | 8_1:-3968445 | Msa1173540:CDS |
| CTTCTCACCCCATACAACAT+GGG | 0.659177 | 8_1:-3971017 | Msa1173540:CDS |
| GGAGCTGTTCATGAGAAAGG+AGG | 0.677401 | 8_1:-3970179 | Msa1173540:CDS |
| TGTAGATGCCTAAAGCATGA+GGG | 0.695124 | 8_1:+3968718 | None:intergenic |
| TGTGTTGGCCAGCAATGGTG+CGG | 0.698432 | 8_1:-3968526 | Msa1173540:CDS |
| GAATAATAAAGAGCAGCATG+TGG | 0.702052 | 8_1:+3970804 | None:intergenic |
| TCGGTTGTGAGACGTCGAGG+AGG | 0.709608 | 8_1:+3969334 | None:intergenic |
| GGGTCTCAGACACTGCACAA+GGG | 0.738404 | 8_1:-3970737 | Msa1173540:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGATTTTTTTAAAACTAAT+GGG | + | chr8_1:3969418-3969437 | None:intergenic | 10.0% |
| !!! | AAAGATTTTTTTAAAACTAA+TGG | + | chr8_1:3969419-3969438 | None:intergenic | 10.0% |
| !!! | ATTAGTTTTAAAAAAATCTT+TGG | - | chr8_1:3969418-3969437 | Msa1173540:intron | 10.0% |
| !!! | TTAGTTTTAAAAAAATCTTT+GGG | - | chr8_1:3969419-3969438 | Msa1173540:intron | 10.0% |
| !!! | TTACTTTTTAAAAAATCTTT+GGG | + | chr8_1:3969679-3969698 | None:intergenic | 10.0% |
| !!! | ATTACTTTTTAAAAAATCTT+TGG | + | chr8_1:3969680-3969699 | None:intergenic | 10.0% |
| !!! | AAAGATTTTTTAAAAAGTAA+TGG | - | chr8_1:3969679-3969698 | Msa1173540:intron | 10.0% |
| !!! | AAGATTTTTTAAAAAGTAAT+GGG | - | chr8_1:3969680-3969699 | Msa1173540:intron | 10.0% |
| !! | TATAAAACTAAAATAAATAC+AGG | - | chr8_1:3970470-3970489 | Msa1173540:intron | 10.0% |
| !! | TAAATAAATTATTTACCTGT+GGG | + | chr8_1:3968453-3968472 | None:intergenic | 15.0% |
| !!! | AAATAACATCTCTATTTTTT+TGG | - | chr8_1:3968785-3968804 | Msa1173540:CDS | 15.0% |
| !!! | AATAACATCTCTATTTTTTT+GGG | - | chr8_1:3968786-3968805 | Msa1173540:CDS | 15.0% |
| !!! | ATTGTAAAAATGTTTTTTGT+AGG | + | chr8_1:3968862-3968881 | None:intergenic | 15.0% |
| !!! | TACAAAAAACATTTTTACAA+TGG | - | chr8_1:3968861-3968880 | Msa1173540:CDS | 15.0% |
| !!! | ACAAATTTTATTGTTAACAT+TGG | + | chr8_1:3969022-3969041 | None:intergenic | 15.0% |
| !!! | TGTGTTTTATTACATTAAAA+TGG | - | chr8_1:3969780-3969799 | Msa1173540:intron | 15.0% |
| !!! | GTGTTTTATTACATTAAAAT+GGG | - | chr8_1:3969781-3969800 | Msa1173540:intron | 15.0% |
| !! | TTCTTAGATAAAATAATTCT+TGG | - | chr8_1:3969904-3969923 | Msa1173540:intron | 15.0% |
| !! | TGCAATATCAATTTATTATT+TGG | - | chr8_1:3970189-3970208 | Msa1173540:CDS | 15.0% |
| !! | CTAAATAAATTATTTACCTG+TGG | + | chr8_1:3968454-3968473 | None:intergenic | 20.0% |
| !! | ACAATGAATAGTTACAATAT+AGG | + | chr8_1:3969086-3969105 | None:intergenic | 20.0% |
| !! | TATTAAAAGACGAATTGTTT+AGG | - | chr8_1:3969462-3969481 | Msa1173540:intron | 20.0% |
| !! | ACTAAACAATTTACTTCAAA+TGG | - | chr8_1:3969855-3969874 | Msa1173540:intron | 20.0% |
| !! | ATAAAATTGTAATATCATGC+AGG | - | chr8_1:3970283-3970302 | Msa1173540:intron | 20.0% |
| !! | TAAAATTGTAATATCATGCA+GGG | - | chr8_1:3970284-3970303 | Msa1173540:intron | 20.0% |
| !!! | AAAATAAATACAGGTTTTGA+TGG | - | chr8_1:3970479-3970498 | Msa1173540:intron | 20.0% |
| !! | CCATCAAATAATCTAAAGTT+CGG | + | chr8_1:3969547-3969566 | None:intergenic | 25.0% |
| ! | TGGTTAATAAACTAAGAACT+CGG | - | chr8_1:3969875-3969894 | Msa1173540:intron | 25.0% |
| ! | AACGTTCTATCGATATATAT+AGG | + | chr8_1:3969987-3970006 | None:intergenic | 25.0% |
| ! | TGAATTTTCCCATGTTGTAT+GGG | + | chr8_1:3968424-3968443 | None:intergenic | 30.0% |
| ! | TTGAATTTTCCCATGTTGTA+TGG | + | chr8_1:3968425-3968444 | None:intergenic | 30.0% |
| AGTTCAATTCAATGTGATGA+GGG | + | chr8_1:3968488-3968507 | None:intergenic | 30.0% | |
| AAGTTCAATTCAATGTGATG+AGG | + | chr8_1:3968489-3968508 | None:intergenic | 30.0% | |
| !! | TTTTGTGTGTGTGTCTTATT+AGG | - | chr8_1:3968552-3968571 | Msa1173540:CDS | 30.0% |
| TTATTCTCAACGAACAACAA+AGG | - | chr8_1:3968643-3968662 | Msa1173540:CDS | 30.0% | |
| TATTCTCAACGAACAACAAA+GGG | - | chr8_1:3968644-3968663 | Msa1173540:CDS | 30.0% | |
| TGAGCTTGAGAACAAAAATA+GGG | + | chr8_1:3968730-3968749 | None:intergenic | 30.0% | |
| ATGAGCTTGAGAACAAAAAT+AGG | + | chr8_1:3968731-3968750 | None:intergenic | 30.0% | |
| GTGTATATGTATGTAATGAC+TGG | - | chr8_1:3968885-3968904 | Msa1173540:CDS | 30.0% | |
| TTAGATCAAATGAGATGCAA+TGG | - | chr8_1:3968985-3969004 | Msa1173540:intron | 30.0% | |
| !! | TCTCAATGTTTTTGAATCCT+TGG | - | chr8_1:3969158-3969177 | Msa1173540:intron | 30.0% |
| ! | TTTGAATCCTTGGTAATTGA+AGG | - | chr8_1:3969168-3969187 | Msa1173540:intron | 30.0% |
| GTTTATGTTATAATTTCCCC+TGG | - | chr8_1:3969353-3969372 | Msa1173540:CDS | 30.0% | |
| ! | CGAATTGTTTAGGAGAATTT+TGG | - | chr8_1:3969472-3969491 | Msa1173540:intron | 30.0% |
| AAAAACTGATGACACAAACA+AGG | + | chr8_1:3969500-3969519 | None:intergenic | 30.0% | |
| CCGAACTTTAGATTATTTGA+TGG | - | chr8_1:3969544-3969563 | Msa1173540:intron | 30.0% | |
| ! | TGAAGTCATTGACAACTTTT+GGG | + | chr8_1:3970128-3970147 | None:intergenic | 30.0% |
| CTAATAATTACCTGCTTCTA+TGG | + | chr8_1:3970169-3970188 | None:intergenic | 30.0% | |
| CTCTAGTGTAATCTAATTAG+AGG | + | chr8_1:3970320-3970339 | None:intergenic | 30.0% | |
| CATTCACAATAATCAGCATA+AGG | + | chr8_1:3970680-3970699 | None:intergenic | 30.0% | |
| ! | TATGCTGATTATTGTGAATG+TGG | - | chr8_1:3970680-3970699 | Msa1173540:intron | 30.0% |
| GCTAAGTCATTAAGTGAATT+AGG | - | chr8_1:3970737-3970756 | Msa1173540:intron | 30.0% | |
| AATGGAACATTTATTGTTGC+TGG | - | chr8_1:3970854-3970873 | Msa1173540:CDS | 30.0% | |
| TAATCAGTATATCCAACAAC+AGG | + | chr8_1:3971040-3971059 | None:intergenic | 30.0% | |
| !! | CTAGTAGCATTTTCAAGAAA+TGG | + | chr8_1:3971064-3971083 | None:intergenic | 30.0% |
| GGAAGAAGAGAATAAGAAAG+TGG | - | chr8_1:3968367-3968386 | Msa1173540:CDS | 35.0% | |
| GAGAATAAGAAAGTGGTTGA+AGG | - | chr8_1:3968374-3968393 | Msa1173540:CDS | 35.0% | |
| ! | GAATTTTCCCATGTTGTATG+GGG | + | chr8_1:3968423-3968442 | None:intergenic | 35.0% |
| TTGCACCTTTAACAAGAACA+AGG | - | chr8_1:3968582-3968601 | Msa1173540:CDS | 35.0% | |
| AAGGACCTTGTTCTTGTTAA+AGG | + | chr8_1:3968590-3968609 | None:intergenic | 35.0% | |
| GAATAATAAAGAGCAGCATG+TGG | + | chr8_1:3968629-3968648 | None:intergenic | 35.0% | |
| GAGAACAAAAATAGGGTAGT+TGG | + | chr8_1:3968723-3968742 | None:intergenic | 35.0% | |
| TCCAAATACCAGGTGTATTT+GGG | + | chr8_1:3969196-3969215 | None:intergenic | 35.0% | |
| ! | GCATATTCTTTTGTCAGCTT+TGG | - | chr8_1:3969273-3969292 | Msa1173540:intron | 35.0% |
| CTAAAACCAGATACCATAGT+TGG | + | chr8_1:3969315-3969334 | None:intergenic | 35.0% | |
| TACTTGCGTTAGACAATTCT+TGG | + | chr8_1:3969599-3969618 | None:intergenic | 35.0% | |
| AGAATTGTCTAACGCAAGTA+AGG | - | chr8_1:3969599-3969618 | Msa1173540:intron | 35.0% | |
| ! | TCGATAGAACGTTTTTGAAC+AGG | - | chr8_1:3969994-3970013 | Msa1173540:intron | 35.0% |
| TTATTTGTGCTTGAGATTGG+AGG | + | chr8_1:3970039-3970058 | None:intergenic | 35.0% | |
| TCCAATCTCAAGCACAAATA+AGG | - | chr8_1:3970038-3970057 | Msa1173540:intron | 35.0% | |
| ! | AATAAGGCACTACAAAAGCA+AGG | - | chr8_1:3970054-3970073 | Msa1173540:intron | 35.0% |
| !!! | GACAACTTTTGGGATTTCAT+CGG | + | chr8_1:3970118-3970137 | None:intergenic | 35.0% |
| ! | CTGAAGTCATTGACAACTTT+TGG | + | chr8_1:3970129-3970148 | None:intergenic | 35.0% |
| AGTTGTCAATGACTTCAGAA+TGG | - | chr8_1:3970131-3970150 | Msa1173540:intron | 35.0% | |
| ACATCATTGCTATGTATGCA+GGG | + | chr8_1:3970348-3970367 | None:intergenic | 35.0% | |
| !! | AAATACAGGTTTTGATGGAG+TGG | - | chr8_1:3970484-3970503 | Msa1173540:intron | 35.0% |
| CTTGCTTGATCAATTCCTAA+AGG | - | chr8_1:3970529-3970548 | Msa1173540:intron | 35.0% | |
| ! | AAAGCAGTTGTTGATGAGAT+TGG | - | chr8_1:3970626-3970645 | Msa1173540:intron | 35.0% |
| TATTGTCATGTCATTGAACC+TGG | - | chr8_1:3970767-3970786 | Msa1173540:CDS | 35.0% | |
| ATTGTCATGTCATTGAACCT+GGG | - | chr8_1:3970768-3970787 | Msa1173540:CDS | 35.0% | |
| !! | GGTGTCACATTTTTCAAACA+TGG | + | chr8_1:3970801-3970820 | None:intergenic | 35.0% |
| CCATTGAAGATCTTTCTCAT+GGG | + | chr8_1:3970839-3970858 | None:intergenic | 35.0% | |
| TCCATTGAAGATCTTTCTCA+TGG | + | chr8_1:3970840-3970859 | None:intergenic | 35.0% | |
| ! | TCAAATCTTCTAGGAAGATC+TGG | + | chr8_1:3970965-3970984 | None:intergenic | 35.0% |
| TCTTCCTAGAAGATTTGAGT+TGG | - | chr8_1:3970967-3970986 | Msa1173540:intron | 35.0% | |
| !! | CTTATCAGCCTTGTTCAATT+GGG | + | chr8_1:3970996-3971015 | None:intergenic | 35.0% |
| !! | TCTTATCAGCCTTGTTCAAT+TGG | + | chr8_1:3970997-3971016 | None:intergenic | 35.0% |
| ATATCCAACAACAGGATCAT+TGG | + | chr8_1:3971032-3971051 | None:intergenic | 35.0% | |
| GAAAATTCAATCTGTCCCAC+AGG | - | chr8_1:3968435-3968454 | Msa1173540:CDS | 40.0% | |
| ATTCAATGTGATGAGGGTCT+AGG | + | chr8_1:3968482-3968501 | None:intergenic | 40.0% | |
| TGGTTGAGCAACGAAATTGA+AGG | + | chr8_1:3968609-3968628 | None:intergenic | 40.0% | |
| TTGGGTACCTTCAATTACCA+AGG | + | chr8_1:3969178-3969197 | None:intergenic | 40.0% | |
| ACCCAAATACACCTGGTATT+TGG | - | chr8_1:3969192-3969211 | Msa1173540:intron | 40.0% | |
| GTCCAAATACCAGGTGTATT+TGG | + | chr8_1:3969197-3969216 | None:intergenic | 40.0% | |
| TGTTCTCTTGTCCAAATACC+AGG | + | chr8_1:3969206-3969225 | None:intergenic | 40.0% | |
| TGGTATTTGGACAAGAGAAC+AGG | - | chr8_1:3969205-3969224 | Msa1173540:intron | 40.0% | |
| TATTTGGACAAGAGAACAGG+TGG | - | chr8_1:3969208-3969227 | Msa1173540:intron | 40.0% | |
| TCATGAACAGCTCCAACAAT+GGG | + | chr8_1:3969245-3969264 | None:intergenic | 40.0% | |
| !! | CCGTATTGTTTCTAATCCAG+GGG | + | chr8_1:3969372-3969391 | None:intergenic | 40.0% |
| ! | CCCCTGGATTAGAAACAATA+CGG | - | chr8_1:3969369-3969388 | Msa1173540:CDS | 40.0% |
| !! | CCCGTATTGTTTCTAATCCA+GGG | + | chr8_1:3969373-3969392 | None:intergenic | 40.0% |
| ! | CCCTGGATTAGAAACAATAC+GGG | - | chr8_1:3969370-3969389 | Msa1173540:CDS | 40.0% |
| GTCAGATTTCGCTTATCATG+TGG | - | chr8_1:3969521-3969540 | Msa1173540:intron | 40.0% | |
| !! | GCCTTATTTGTGCTTGAGAT+TGG | + | chr8_1:3970042-3970061 | None:intergenic | 40.0% |
| ! | ACCTGCTTCTATGGCATTTT+TGG | + | chr8_1:3970160-3970179 | None:intergenic | 40.0% |
| CACATCATTGCTATGTATGC+AGG | + | chr8_1:3970349-3970368 | None:intergenic | 40.0% | |
| TTTGATGGAGTGGAGATACA+TGG | - | chr8_1:3970494-3970513 | Msa1173540:intron | 40.0% | |
| TGTCGTTCACTTTGTCCTTT+AGG | + | chr8_1:3970547-3970566 | None:intergenic | 40.0% | |
| AACGACAGAGATGATGAGTA+TGG | - | chr8_1:3970560-3970579 | Msa1173540:intron | 40.0% | |
| ACAGAGATGATGAGTATGGT+GGG | - | chr8_1:3970564-3970583 | Msa1173540:intron | 40.0% | |
| TGTAGATGCCTAAAGCATGA+GGG | + | chr8_1:3970715-3970734 | None:intergenic | 40.0% | |
| ATGTAGATGCCTAAAGCATG+AGG | + | chr8_1:3970716-3970735 | None:intergenic | 40.0% | |
| ! | TCATGCTTTAGGCATCTACA+TGG | - | chr8_1:3970715-3970734 | Msa1173540:intron | 40.0% |
| GATCTTTCTCATGGGCATTA+AGG | + | chr8_1:3970831-3970850 | None:intergenic | 40.0% | |
| CCCATGAGAAAGATCTTCAA+TGG | - | chr8_1:3970836-3970855 | Msa1173540:CDS | 40.0% | |
| GGAACATTTATTGTTGCTGG+TGG | - | chr8_1:3970857-3970876 | Msa1173540:CDS | 40.0% | |
| ! | TTGTTGCTGGTGGATACAAT+AGG | - | chr8_1:3970867-3970886 | Msa1173540:intron | 40.0% |
| GACTGAAGGAAACAATGTGT+TGG | - | chr8_1:3970889-3970908 | Msa1173540:intron | 40.0% | |
| ! | AGCTTATGGAAGGCTCTTTT+TGG | - | chr8_1:3970934-3970953 | Msa1173540:intron | 40.0% |
| GCATCCAACTCAAATCTTCT+AGG | + | chr8_1:3970974-3970993 | None:intergenic | 40.0% | |
| TACACCAATGATCCTGTTGT+TGG | - | chr8_1:3971025-3971044 | Msa1173540:CDS | 40.0% | |
| ATGTTGTATGGGGTGAGAAG+GGG | + | chr8_1:3968413-3968432 | None:intergenic | 45.0% | |
| CATGTTGTATGGGGTGAGAA+GGG | + | chr8_1:3968414-3968433 | None:intergenic | 45.0% | |
| CTTCTCACCCCATACAACAT+GGG | - | chr8_1:3968413-3968432 | Msa1173540:CDS | 45.0% | |
| TCTCAACGAACAACAAAGGG+TGG | - | chr8_1:3968647-3968666 | Msa1173540:CDS | 45.0% | |
| ACAAAGGGTGGCTTCTTGAT+TGG | - | chr8_1:3968659-3968678 | Msa1173540:CDS | 45.0% | |
| CAAAGGGTGGCTTCTTGATT+GGG | - | chr8_1:3968660-3968679 | Msa1173540:CDS | 45.0% | |
| AAAGGGTGGCTTCTTGATTG+GGG | - | chr8_1:3968661-3968680 | Msa1173540:CDS | 45.0% | |
| !! | TGAAGGTACCCAAATACACC+TGG | - | chr8_1:3969185-3969204 | Msa1173540:intron | 45.0% |
| GAAGCATGGAAACCCATTGT+TGG | - | chr8_1:3969230-3969249 | Msa1173540:intron | 45.0% | |
| CTCATGAACAGCTCCAACAA+TGG | + | chr8_1:3969246-3969265 | None:intergenic | 45.0% | |
| GTTGGAGCTGTTCATGAGAA+AGG | - | chr8_1:3969248-3969267 | Msa1173540:intron | 45.0% | |
| GAGTGTCCAACTATGGTATC+TGG | - | chr8_1:3969306-3969325 | Msa1173540:CDS | 45.0% | |
| !! | GCCCGTATTGTTTCTAATCC+AGG | + | chr8_1:3969374-3969393 | None:intergenic | 45.0% |
| TGAACAGGTTACCAACCAGA+TGG | - | chr8_1:3970009-3970028 | Msa1173540:intron | 45.0% | |
| GCCAAAAATGCCATAGAAGC+AGG | - | chr8_1:3970156-3970175 | Msa1173540:CDS | 45.0% | |
| GTGGAGATACATGGAGCTAA+TGG | - | chr8_1:3970503-3970522 | Msa1173540:intron | 45.0% | |
| GACAGAGATGATGAGTATGG+TGG | - | chr8_1:3970563-3970582 | Msa1173540:intron | 45.0% | |
| CTGCTTTCACAACCTCTAGA+GGG | + | chr8_1:3970613-3970632 | None:intergenic | 45.0% | |
| ACTGCTTTCACAACCTCTAG+AGG | + | chr8_1:3970614-3970633 | None:intergenic | 45.0% | |
| GAGATTGGAGCTGACAAAGT+TGG | - | chr8_1:3970641-3970660 | Msa1173540:intron | 45.0% | |
| GACTCTAACCCTCATGCTTT+AGG | - | chr8_1:3970704-3970723 | Msa1173540:intron | 45.0% | |
| CATGGGCATTAAGGACTCAT+TGG | + | chr8_1:3970822-3970841 | None:intergenic | 45.0% | |
| GGTGGATACAATAGGACTGA+AGG | - | chr8_1:3970875-3970894 | Msa1173540:intron | 45.0% | |
| ! | AACAATGTGTTGGCCAGCAA+TGG | - | chr8_1:3970899-3970918 | Msa1173540:intron | 45.0% |
| ! | CGGATTTGGTAGCTTATGGA+AGG | - | chr8_1:3970924-3970943 | Msa1173540:intron | 45.0% |
| GTTGGATGCCCAATTGAACA+AGG | - | chr8_1:3970985-3971004 | Msa1173540:intron | 45.0% | |
| CCATGTTGTATGGGGTGAGA+AGG | + | chr8_1:3968415-3968434 | None:intergenic | 50.0% | |
| CCTTCTCACCCCATACAACA+TGG | - | chr8_1:3968412-3968431 | Msa1173540:CDS | 50.0% | |
| TTCTTGATTGGGGAAGCCTC+AGG | - | chr8_1:3968671-3968690 | Msa1173540:CDS | 50.0% | |
| TCTTGATTGGGGAAGCCTCA+GGG | - | chr8_1:3968672-3968691 | Msa1173540:CDS | 50.0% | |
| CAAGAGAACAGGTGGAAGCA+TGG | - | chr8_1:3969216-3969235 | Msa1173540:intron | 50.0% | |
| GGAGCTGTTCATGAGAAAGG+AGG | - | chr8_1:3969251-3969270 | Msa1173540:intron | 50.0% | |
| !! | TTTTGTCAGCTTTGGCACGC+TGG | - | chr8_1:3969281-3969300 | Msa1173540:CDS | 50.0% |
| !! | GCTGGAAGAGTGTCCAACTA+TGG | - | chr8_1:3969299-3969318 | Msa1173540:CDS | 50.0% |
| TCAAACATGGTGCACATCCC+AGG | + | chr8_1:3970788-3970807 | None:intergenic | 50.0% | |
| TACCAAATCCGCACCATTGC+TGG | + | chr8_1:3970915-3970934 | None:intergenic | 50.0% | |
| ! | GGTGCGGATTTGGTAGCTTA+TGG | - | chr8_1:3970920-3970939 | Msa1173540:intron | 50.0% |
| CTTGATTGGGGAAGCCTCAG+GGG | - | chr8_1:3968673-3968692 | Msa1173540:CDS | 55.0% | |
| GGGTCTCAGACACTGCACAA+GGG | - | chr8_1:3968693-3968712 | Msa1173540:CDS | 55.0% | |
| TTGGAGGCTGTCCATCTGGT+TGG | + | chr8_1:3970023-3970042 | None:intergenic | 55.0% | |
| GAGATTGGAGGCTGTCCATC+TGG | + | chr8_1:3970027-3970046 | None:intergenic | 55.0% | |
| TTGTGAGACGTCGAGGAGGT+GGG | + | chr8_1:3970095-3970114 | None:intergenic | 55.0% | |
| ! | TCATCGGTTGTGAGACGTCG+AGG | + | chr8_1:3970102-3970121 | None:intergenic | 55.0% |
| ! | TCGTTGTCGCTTCCCTCTAG+AGG | - | chr8_1:3970598-3970617 | Msa1173540:intron | 55.0% |
| ! | TGTGTTGGCCAGCAATGGTG+CGG | - | chr8_1:3970904-3970923 | Msa1173540:intron | 55.0% |
| ! | TGCAGTGTCTGAGACCCCTG+AGG | + | chr8_1:3968690-3968709 | None:intergenic | 60.0% |
| GGGGTCTCAGACACTGCACA+AGG | - | chr8_1:3968692-3968711 | Msa1173540:CDS | 60.0% | |
| GTTGTGAGACGTCGAGGAGG+TGG | + | chr8_1:3970096-3970115 | None:intergenic | 60.0% | |
| TCGGTTGTGAGACGTCGAGG+AGG | + | chr8_1:3970099-3970118 | None:intergenic | 60.0% | |
| GGCCAGCAATGGTGCGGATT+TGG | - | chr8_1:3970910-3970929 | Msa1173540:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 3968365 | 3971087 | 3968365 | ID=Msa1173540;Name=Msa1173540 |
| chr8_1 | mRNA | 3968365 | 3971087 | 3968365 | ID=Msa1173540-mRNA-1;Parent=Msa1173540;Name=Msa1173540-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|5|0|373 |
| chr8_1 | exon | 3970996 | 3971087 | 3970996 | ID=Msa1173540-mRNA-1:exon:1453;Parent=Msa1173540-mRNA-1 |
| chr8_1 | exon | 3970738 | 3970878 | 3970738 | ID=Msa1173540-mRNA-1:exon:1452;Parent=Msa1173540-mRNA-1 |
| chr8_1 | exon | 3970132 | 3970262 | 3970132 | ID=Msa1173540-mRNA-1:exon:1451;Parent=Msa1173540-mRNA-1 |
| chr8_1 | exon | 3969275 | 3969436 | 3969275 | ID=Msa1173540-mRNA-1:exon:1450;Parent=Msa1173540-mRNA-1 |
| chr8_1 | exon | 3968365 | 3968960 | 3968365 | ID=Msa1173540-mRNA-1:exon:1449;Parent=Msa1173540-mRNA-1 |
| chr8_1 | CDS | 3970996 | 3971087 | 3970996 | ID=Msa1173540-mRNA-1:cds;Parent=Msa1173540-mRNA-1 |
| chr8_1 | CDS | 3970738 | 3970878 | 3970738 | ID=Msa1173540-mRNA-1:cds;Parent=Msa1173540-mRNA-1 |
| chr8_1 | CDS | 3970132 | 3970262 | 3970132 | ID=Msa1173540-mRNA-1:cds;Parent=Msa1173540-mRNA-1 |
| chr8_1 | CDS | 3969275 | 3969436 | 3969275 | ID=Msa1173540-mRNA-1:cds;Parent=Msa1173540-mRNA-1 |
| chr8_1 | CDS | 3968365 | 3968960 | 3968365 | ID=Msa1173540-mRNA-1:cds;Parent=Msa1173540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
