Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387670 | XP_003601531.2 | 86.506 | 415 | 32 | 3 | 3 | 393 | 10 | 424 | 0.0 | 731 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387670 | G7J8V1 | 86.506 | 415 | 32 | 3 | 3 | 393 | 10 | 424 | 0.0 | 731 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0147000 | Msa0387670 | -0.806613 | 7.553702e-50 | -8.615850e-47 |
| Msa0168100 | Msa0387670 | 0.810852 | 9.379367e-51 | -8.615850e-47 |
| Msa0183620 | Msa0387670 | 0.832494 | 9.155212e-56 | -8.615850e-47 |
| Msa0207000 | Msa0387670 | 0.800730 | 1.256682e-48 | -8.615850e-47 |
| Msa0387670 | Msa0387700 | 0.943891 | 5.294183e-103 | -8.615850e-47 |
| Msa0387670 | Msa0387760 | 0.810127 | 1.345350e-50 | -8.615850e-47 |
| Msa0387670 | Msa0423360 | -0.811577 | 6.529503e-51 | -8.615850e-47 |
| Msa0387670 | Msa0526710 | 0.800251 | 1.573248e-48 | -8.615850e-47 |
| Msa0387670 | Msa0535030 | 0.803150 | 3.999684e-49 | -8.615850e-47 |
| Msa0387670 | Msa0535060 | 0.804123 | 2.512681e-49 | -8.615850e-47 |
| Msa0387670 | Msa0883030 | 0.807156 | 5.799956e-50 | -8.615850e-47 |
| Msa0387670 | Msa0890250 | 0.809472 | 1.860905e-50 | -8.615850e-47 |
| Msa0387670 | Msa1037000 | 0.801564 | 8.484503e-49 | -8.615850e-47 |
| Msa0387670 | Msa1044340 | 0.804917 | 1.715969e-49 | -8.615850e-47 |
| Msa0387670 | Msa1242330 | 0.807382 | 5.195038e-50 | -8.615850e-47 |
| Msa0387670 | Msa1463970 | 0.807026 | 6.179836e-50 | -8.615850e-47 |
| Msa0267760 | Msa0387670 | 0.801488 | 8.794537e-49 | -8.615850e-47 |
| Msa0272480 | Msa0387670 | -0.800528 | 1.381812e-48 | -8.615850e-47 |
| Msa0342200 | Msa0387670 | 0.815575 | 8.618999e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387670 | MtrunA17_Chr3g0120771 | 86.506 | 415 | 32 | 3 | 3 | 393 | 10 | 424 | 0.0 | 731 |
| Msa0387670 | MtrunA17_Chr3g0120781 | 68.844 | 398 | 88 | 8 | 1 | 393 | 1 | 367 | 0.0 | 528 |
| Msa0387670 | MtrunA17_Chr6g0466721 | 67.222 | 360 | 84 | 6 | 38 | 393 | 5 | 334 | 1.09e-167 | 474 |
| Msa0387670 | MtrunA17_Chr6g0466711 | 82.558 | 86 | 15 | 0 | 284 | 369 | 4 | 89 | 3.81e-46 | 153 |
| Msa0387670 | MtrunA17_Chr6g0466701 | 60.684 | 117 | 44 | 1 | 28 | 142 | 4 | 120 | 3.44e-43 | 147 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387670 | AT4G25330.1 | 34.659 | 176 | 103 | 4 | 47 | 217 | 37 | 205 | 3.40e-26 | 105 |
Find 82 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTCTTTCTGTTCAGGTTC+AGG | 0.218482 | 3_1:+91745134 | Msa0387670:CDS |
| AGGGGCCAAGCGATCTGTTT+TGG | 0.228672 | 3_1:+91747596 | Msa0387670:CDS |
| GAGTGTCGGGAGCTGGTTCC+AGG | 0.263329 | 3_1:+91745162 | Msa0387670:CDS |
| TCCAGCTGTGGCTTCATTCT+TGG | 0.270435 | 3_1:+91747225 | Msa0387670:CDS |
| GGGAGCTGGTTCCAGGTGTT+AGG | 0.277062 | 3_1:+91745169 | Msa0387670:CDS |
| GTTCAGACCTCTTTCTGTTC+AGG | 0.329497 | 3_1:+91745128 | Msa0387670:CDS |
| ACAGATCGCTTGGCCCCTTC+AGG | 0.329863 | 3_1:-91747591 | None:intergenic |
| CCGGGCCAAGCGATCTGCTT+TGG | 0.343279 | 3_1:+91747518 | Msa0387670:CDS |
| AACTGCATGTCTTCGTTCTT+CGG | 0.352064 | 3_1:-91744907 | None:intergenic |
| GAAGATGTTATGATGTGTTT+TGG | 0.362413 | 3_1:-91748900 | None:intergenic |
| AGGTGCCAAGCAAACTGTTT+TGG | 0.365249 | 3_1:+91747557 | Msa0387670:CDS |
| GTTCTTCGGTGTCATGGTTT+CGG | 0.382444 | 3_1:-91744893 | None:intergenic |
| AACACGACGTCGCGTTTACT+AGG | 0.389994 | 3_1:-91744847 | None:intergenic |
| CGGGCCAAGCGATCTGCTTT+GGG | 0.402287 | 3_1:+91747519 | Msa0387670:CDS |
| AAACAAACCTTCTGGAGAAC+TGG | 0.407449 | 3_1:-91747622 | None:intergenic |
| ATCACAATCTGGACAGGAAA+TGG | 0.411738 | 3_1:+91747270 | Msa0387670:CDS |
| AAGCGATCTGCTTTGGGTAC+CGG | 0.422438 | 3_1:+91747525 | Msa0387670:CDS |
| TGTGTACCTTTATACTGTCT+TGG | 0.424257 | 3_1:+91747122 | Msa0387670:CDS |
| CTTGGCCCCTTCAGGAGAAC+TGG | 0.425769 | 3_1:-91747583 | None:intergenic |
| GTCTTCGTTCTTCGGTGTCA+TGG | 0.427189 | 3_1:-91744899 | None:intergenic |
| CTTGGCACCTTCAGAAGAAC+CGG | 0.448227 | 3_1:-91747544 | None:intergenic |
| TTGGGTACCGGTTCTTCTGA+AGG | 0.454916 | 3_1:+91747537 | Msa0387670:CDS |
| GGAGCTGGTTCCAGGTGTTA+GGG | 0.455064 | 3_1:+91745170 | Msa0387670:CDS |
| CGACGTCGCGTTTACTAGGT+TGG | 0.457333 | 3_1:-91744843 | None:intergenic |
| CTTCATTCTTGGATATTACA+AGG | 0.457723 | 3_1:+91747236 | Msa0387670:CDS |
| CACATCATAACATCTTCAAC+TGG | 0.458653 | 3_1:+91748906 | Msa0387670:CDS |
| CTATGATGCTGTTGTTGATA+CGG | 0.460810 | 3_1:+91745233 | Msa0387670:CDS |
| TTTATACTGTCTTGGTCACA+TGG | 0.463500 | 3_1:+91747130 | Msa0387670:CDS |
| TGTTAGGGTTTGTGCTTCGC+AGG | 0.469050 | 3_1:+91745185 | Msa0387670:CDS |
| GGTTCAGGATCACGAGTGTC+GGG | 0.473562 | 3_1:+91745149 | Msa0387670:CDS |
| TGGGTGCCAGTTCTCCTGAA+GGG | 0.474895 | 3_1:+91747577 | Msa0387670:CDS |
| GGCACCCAAAACAGTTTGCT+TGG | 0.478020 | 3_1:-91747562 | None:intergenic |
| TTGGGTGCCAGTTCTCCTGA+AGG | 0.480310 | 3_1:+91747576 | Msa0387670:CDS |
| AAATGTGTGCATGATATTGA+TGG | 0.487824 | 3_1:+91748701 | Msa0387670:CDS |
| ATGGTGGTGTACTGCAACAC+AGG | 0.488051 | 3_1:+91747289 | Msa0387670:CDS |
| GACGTCGCGTTTACTAGGTT+GGG | 0.496512 | 3_1:-91744842 | None:intergenic |
| ATGTGACCAAGACAGTATAA+AGG | 0.500143 | 3_1:-91747128 | None:intergenic |
| GGGTGCCAGTTCTCCTGAAG+GGG | 0.503685 | 3_1:+91747578 | Msa0387670:CDS |
| TCCAAGAATGAAGCCACAGC+TGG | 0.503907 | 3_1:-91747226 | None:intergenic |
| ATTGATAATTTGTTCGAACC+AGG | 0.505158 | 3_1:+91745063 | Msa0387670:CDS |
| TATATCTCCGATGATAAACT+TGG | 0.509755 | 3_1:-91748810 | None:intergenic |
| TTGCAACATGATGGCACCCC+TGG | 0.509975 | 3_1:-91748835 | None:intergenic |
| TCCTGAACCTGAACAGAAAG+AGG | 0.511183 | 3_1:-91745135 | None:intergenic |
| CCAGTTCCAGCGAAAACGCC+GGG | 0.514093 | 3_1:+91747500 | Msa0387670:intron |
| GGATCACGAGTGTCGGGAGC+TGG | 0.515386 | 3_1:+91745155 | Msa0387670:CDS |
| TTGGGTGCCAGTTCTCCAGA+AGG | 0.516886 | 3_1:+91747615 | Msa0387670:CDS |
| AGGAGAATAGAATCACAATC+TGG | 0.519936 | 3_1:+91747259 | Msa0387670:CDS |
| GGCACCCAAAACAGATCGCT+TGG | 0.520400 | 3_1:-91747601 | None:intergenic |
| CCAAAGCAGATCGCTTGGCC+CGG | 0.521826 | 3_1:-91747518 | None:intergenic |
| TGGTCACATGGGCCAAATGT+TGG | 0.523682 | 3_1:+91747142 | Msa0387670:CDS |
| AATAGAATCACAATCTGGAC+AGG | 0.535018 | 3_1:+91747264 | Msa0387670:CDS |
| ACCGTCAGTGTTACGTTGGA+AGG | 0.536971 | 3_1:+91744997 | Msa0387670:CDS |
| AAACTCTTGAAGATCTTCCA+TGG | 0.540550 | 3_1:-91745097 | None:intergenic |
| CCTCTCAGTTTGCAACATGA+TGG | 0.545960 | 3_1:-91748844 | None:intergenic |
| AGGTTCAGGATCACGAGTGT+CGG | 0.549905 | 3_1:+91745148 | Msa0387670:CDS |
| GGTACCCAAAGCAGATCGCT+TGG | 0.552676 | 3_1:-91747523 | None:intergenic |
| TCCAGTTCCAGCGAAAACGC+CGG | 0.556318 | 3_1:+91747499 | Msa0387670:intron |
| GCTGGATCATACTCTAGTAC+AGG | 0.562859 | 3_1:-91747208 | None:intergenic |
| TCATAACATCTTCAACTGGC+AGG | 0.567554 | 3_1:+91748910 | Msa0387670:CDS |
| CGGTTTGTTGAGAAGCTGTG+AGG | 0.573005 | 3_1:-91744873 | None:intergenic |
| GTGGAAGATAAAGAGTTGAA+AGG | 0.581570 | 3_1:+91748672 | Msa0387670:intron |
| GTAACTACGAAGATGACGCT+TGG | 0.588473 | 3_1:+91744971 | Msa0387670:CDS |
| TTGATAATTTGTTCGAACCA+GGG | 0.593655 | 3_1:+91745064 | Msa0387670:CDS |
| TCCTTCCAACGTAACACTGA+CGG | 0.597934 | 3_1:-91744998 | None:intergenic |
| CATCATGTTGCAAACTGAGA+GGG | 0.605805 | 3_1:+91748845 | Msa0387670:CDS |
| ATCTTCGTAGTTACGAAACT+CGG | 0.607772 | 3_1:-91744962 | None:intergenic |
| GGTTTGTTGAGAAGCTGTGA+GGG | 0.608654 | 3_1:-91744872 | None:intergenic |
| GTTAATCGTTCACGAACAGA+AGG | 0.610755 | 3_1:+91744927 | Msa0387670:CDS |
| AACACTGTTTCCTAAATCTG+AGG | 0.620484 | 3_1:+91749283 | Msa0387670:CDS |
| TATCATCGGAGATATATACC+AGG | 0.620834 | 3_1:+91748817 | Msa0387670:CDS |
| AATGTGTGCATGATATTGAT+GGG | 0.634957 | 3_1:+91748702 | Msa0387670:CDS |
| CCATCATGTTGCAAACTGAG+AGG | 0.636376 | 3_1:+91748844 | Msa0387670:CDS |
| GAAGCACAAACCCTAACACC+TGG | 0.649009 | 3_1:-91745180 | None:intergenic |
| GTACACCGTCAGTGTTACGT+TGG | 0.658687 | 3_1:+91744993 | Msa0387670:CDS |
| ATCTTCAAGAGTTTGAGACA+CGG | 0.662272 | 3_1:+91745106 | Msa0387670:CDS |
| ATCATCGGAGATATATACCA+GGG | 0.663531 | 3_1:+91748818 | Msa0387670:CDS |
| CAACAGCATCATAGAAACGA+AGG | 0.663670 | 3_1:-91745224 | None:intergenic |
| ACAATCTGGACAGGAAATGG+TGG | 0.671026 | 3_1:+91747273 | Msa0387670:CDS |
| TTATACTGTCTTGGTCACAT+GGG | 0.673466 | 3_1:+91747131 | Msa0387670:CDS |
| CATTCTTGGATATTACAAGG+AGG | 0.704872 | 3_1:+91747239 | Msa0387670:CDS |
| ACTAGAGTATGATCCAGCTG+TGG | 0.711810 | 3_1:+91747213 | Msa0387670:CDS |
| TCATCGGAGATATATACCAG+GGG | 0.730219 | 3_1:+91748819 | Msa0387670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTTTTATTTTATTT+TGG | + | chr3_1:91745415-91745434 | Msa0387670:intron | 0.0% |
| !! | TAATGAAGTTAAATATTATT+GGG | + | chr3_1:91745366-91745385 | Msa0387670:intron | 10.0% |
| !! | CATTAAATAATTTATGTATT+TGG | + | chr3_1:91745631-91745650 | Msa0387670:intron | 10.0% |
| !! | TGTAATTAAATAATCTATTA+GGG | - | chr3_1:91746471-91746490 | None:intergenic | 10.0% |
| !! | GTAATGAAGTTAAATATTAT+TGG | + | chr3_1:91745365-91745384 | Msa0387670:intron | 15.0% |
| !! | AATGAAGTTAAATATTATTG+GGG | + | chr3_1:91745367-91745386 | Msa0387670:intron | 15.0% |
| !!! | ATAATTTATGTATTTGGTTT+AGG | + | chr3_1:91745637-91745656 | Msa0387670:intron | 15.0% |
| !! | ATAACTAAGTACTTATAATA+TGG | + | chr3_1:91745971-91745990 | Msa0387670:intron | 15.0% |
| !!! | TTAAAATTTTGATACATTGA+AGG | + | chr3_1:91746123-91746142 | Msa0387670:intron | 15.0% |
| !! | TAATTAAATGCATACATTAA+TGG | + | chr3_1:91746207-91746226 | Msa0387670:intron | 15.0% |
| !! | AATTAAATGCATACATTAAT+GGG | + | chr3_1:91746208-91746227 | Msa0387670:intron | 15.0% |
| !! | GTAATTAAATAATCTATTAG+GGG | - | chr3_1:91746470-91746489 | None:intergenic | 15.0% |
| !! | GTGTAATTAAATAATCTATT+AGG | - | chr3_1:91746472-91746491 | None:intergenic | 15.0% |
| !!! | ATATTTTATTATGCAAAAAG+TGG | + | chr3_1:91746633-91746652 | Msa0387670:intron | 15.0% |
| !! | AATAATAAAATTCTAAGTGT+TGG | - | chr3_1:91747805-91747824 | None:intergenic | 15.0% |
| !! | ATAACAATTATGATAAGTAA+CGG | - | chr3_1:91748260-91748279 | None:intergenic | 15.0% |
| !! | AGTAGATAAAAATGATAAAT+GGG | - | chr3_1:91748543-91748562 | None:intergenic | 15.0% |
| !! | AAGTAGATAAAAATGATAAA+TGG | - | chr3_1:91748544-91748563 | None:intergenic | 15.0% |
| !!! | TTTATCATTTTTATCTACTT+TGG | + | chr3_1:91748544-91748563 | Msa0387670:intron | 15.0% |
| !!! | TTACTTTTGTTATTTACTAT+CGG | + | chr3_1:91748994-91749013 | Msa0387670:intron | 15.0% |
| !! | CTTTGTTAAAATTATAACTT+AGG | - | chr3_1:91749054-91749073 | None:intergenic | 15.0% |
| !! | AAAATGCTAAAAACTGAAAA+TGG | - | chr3_1:91745300-91745319 | None:intergenic | 20.0% |
| !!! | GTAAATTGTTTCTTGTAAAT+AGG | - | chr3_1:91745601-91745620 | None:intergenic | 20.0% |
| !!! | GTCAACTTTTTCTTATAATT+AGG | + | chr3_1:91745700-91745719 | Msa0387670:intron | 20.0% |
| !! | TATATGAAAAGAGTTAATGT+CGG | - | chr3_1:91745936-91745955 | None:intergenic | 20.0% |
| !! | AAAATGTAAGGTATAAAATG+TGG | - | chr3_1:91746679-91746698 | None:intergenic | 20.0% |
| !!! | ACATTTTATACCTTACATTT+TGG | + | chr3_1:91746678-91746697 | Msa0387670:intron | 20.0% |
| !! | TTTAATATGTTTGACATTAG+AGG | + | chr3_1:91746798-91746817 | Msa0387670:intron | 20.0% |
| !! | TTAATATGTTTGACATTAGA+GGG | + | chr3_1:91746799-91746818 | Msa0387670:intron | 20.0% |
| !!! | TGTGAAATTGATGTTTTTAT+AGG | + | chr3_1:91747057-91747076 | Msa0387670:intron | 20.0% |
| !! | AATAAAAACTAAGAGCAAAA+TGG | + | chr3_1:91747336-91747355 | Msa0387670:CDS | 20.0% |
| !! | ATAAAAACTAAGAGCAAAAT+GGG | + | chr3_1:91747337-91747356 | Msa0387670:CDS | 20.0% |
| !! | AAATAGCAGTATATGATTAT+TGG | + | chr3_1:91747442-91747461 | Msa0387670:intron | 20.0% |
| !!! | AAAAAATGTAGTAGTTTTTC+TGG | + | chr3_1:91748043-91748062 | Msa0387670:intron | 20.0% |
| !! | ACAACATAAATAAATGGTAA+TGG | - | chr3_1:91748191-91748210 | None:intergenic | 20.0% |
| !! | TACCATTTATTTATGTTGTT+CGG | + | chr3_1:91748192-91748211 | Msa0387670:intron | 20.0% |
| !!! | AAAGTTATTACCTTTTAAGT+AGG | - | chr3_1:91748288-91748307 | None:intergenic | 20.0% |
| !!! | AAAAATATCAAAGCATCAAT+AGG | + | chr3_1:91749260-91749279 | Msa0387670:CDS | 20.0% |
| !! | TTTTCATTTCAGACATTGAT+TGG | + | chr3_1:91745472-91745491 | Msa0387670:intron | 25.0% |
| !! | CTTTTTCTTATAATTAGGAC+CGG | + | chr3_1:91745705-91745724 | Msa0387670:intron | 25.0% |
| !!! | TTTAGTCTTAAATGTGTAAC+CGG | + | chr3_1:91745817-91745836 | Msa0387670:intron | 25.0% |
| !! | AAGCATAGATTTTACAAAAG+AGG | + | chr3_1:91746725-91746744 | Msa0387670:intron | 25.0% |
| ! | AATGTAATTCAAACATCTCT+CGG | + | chr3_1:91746755-91746774 | Msa0387670:intron | 25.0% |
| ! | TAATATGTTTGACATTAGAG+GGG | + | chr3_1:91746800-91746819 | Msa0387670:intron | 25.0% |
| ! | TGTAATTTAAGCATCTCTTA+TGG | + | chr3_1:91746831-91746850 | Msa0387670:intron | 25.0% |
| ! | GTAATTTAAGCATCTCTTAT+GGG | + | chr3_1:91746832-91746851 | Msa0387670:intron | 25.0% |
| !!! | TCTTAGTTTTTATTTCAGTG+TGG | - | chr3_1:91747330-91747349 | None:intergenic | 25.0% |
| !!! | TTATTTTGAACGAATGCAAA+AGG | + | chr3_1:91747360-91747379 | Msa0387670:CDS | 25.0% |
| ! | CATTGATACTGTAAAATTGT+TGG | + | chr3_1:91747911-91747930 | Msa0387670:intron | 25.0% |
| ! | ATCCGAACAACATAAATAAA+TGG | - | chr3_1:91748197-91748216 | None:intergenic | 25.0% |
| !!! | TCATTGTTTCTCTTTTTCTT+CGG | + | chr3_1:91748216-91748235 | Msa0387670:intron | 25.0% |
| ! | AGTTTATTTGAACATGCATA+AGG | - | chr3_1:91748484-91748503 | None:intergenic | 25.0% |
| !!! | TCCTCAGTTTTTCAAATTTT+TGG | + | chr3_1:91748635-91748654 | Msa0387670:intron | 25.0% |
| ! | ACCAAAAATTTGAAAAACTG+AGG | - | chr3_1:91748639-91748658 | None:intergenic | 25.0% |
| !!! | TTCAAATTTTTGGTTCTAGT+TGG | + | chr3_1:91748645-91748664 | Msa0387670:intron | 25.0% |
| !! | CATTTTTCCAAGTTTATCAT+CGG | + | chr3_1:91748803-91748822 | Msa0387670:CDS | 25.0% |
| !!! | ATAATTTTAACAAAGCTTCC+AGG | + | chr3_1:91749059-91749078 | Msa0387670:intron | 25.0% |
| ! | GTGATAATTGAAAAACAAGT+GGG | + | chr3_1:91749233-91749252 | Msa0387670:CDS | 25.0% |
| !! | ATTGATAATTTGTTCGAACC+AGG | + | chr3_1:91745063-91745082 | Msa0387670:CDS | 30.0% |
| !! | TTGATAATTTGTTCGAACCA+GGG | + | chr3_1:91745064-91745083 | Msa0387670:CDS | 30.0% |
| TAAAAACTGAAAATGGCGTT+TGG | - | chr3_1:91745293-91745312 | None:intergenic | 30.0% | |
| ! | TTTGGACATTGATGTGTTTT+TGG | + | chr3_1:91745433-91745452 | Msa0387670:intron | 30.0% |
| ! | TTGTTTCTTGTAAATAGGAC+TGG | - | chr3_1:91745596-91745615 | None:intergenic | 30.0% |
| TGAAGAACTATTATTGTTGC+CGG | - | chr3_1:91745839-91745858 | None:intergenic | 30.0% | |
| GCGATAACTAAGTACTTATA+AGG | + | chr3_1:91745993-91746012 | Msa0387670:intron | 30.0% | |
| ACATTGAAGGACTATTAATG+TGG | + | chr3_1:91746136-91746155 | Msa0387670:intron | 30.0% | |
| TGGCTATTCATTACATATTC+AGG | + | chr3_1:91746156-91746175 | Msa0387670:intron | 30.0% | |
| GGCTATTCATTACATATTCA+GGG | + | chr3_1:91746157-91746176 | Msa0387670:intron | 30.0% | |
| ! | AAACGAAACAGTAGTCATTT+TGG | - | chr3_1:91746184-91746203 | None:intergenic | 30.0% |
| !!! | TTAGTGTGAGGTCTTTTTTT+TGG | + | chr3_1:91746339-91746358 | Msa0387670:intron | 30.0% |
| AAGTTTAAGTAAGCTGAGTT+CGG | - | chr3_1:91746412-91746431 | None:intergenic | 30.0% | |
| GTATAAAATGTGGAGAAAAG+GGG | - | chr3_1:91746669-91746688 | None:intergenic | 30.0% | |
| GGTATAAAATGTGGAGAAAA+GGG | - | chr3_1:91746670-91746689 | None:intergenic | 30.0% | |
| AGGTATAAAATGTGGAGAAA+AGG | - | chr3_1:91746671-91746690 | None:intergenic | 30.0% | |
| ! | TAGATTTTACAAAAGAGGAG+AGG | + | chr3_1:91746730-91746749 | Msa0387670:intron | 30.0% |
| ! | AGATTTTACAAAAGAGGAGA+GGG | + | chr3_1:91746731-91746750 | Msa0387670:intron | 30.0% |
| ATGTAATTCAAACATCTCTC+GGG | + | chr3_1:91746756-91746775 | Msa0387670:intron | 30.0% | |
| !!! | TTGAAGTTTTAGCTATGAGT+TGG | + | chr3_1:91746993-91747012 | Msa0387670:intron | 30.0% |
| ! | GAAGTCAATTTTCCAACATT+TGG | - | chr3_1:91747157-91747176 | None:intergenic | 30.0% |
| CTTCATTCTTGGATATTACA+AGG | + | chr3_1:91747236-91747255 | Msa0387670:CDS | 30.0% | |
| !! | AAACTAATGGAAAGTACTCA+TGG | - | chr3_1:91747411-91747430 | None:intergenic | 30.0% |
| TTTCTCAGCATACAAACTAA+TGG | - | chr3_1:91747424-91747443 | None:intergenic | 30.0% | |
| !! | GTAGAGGTTGATACTAAAAT+TGG | + | chr3_1:91747655-91747674 | Msa0387670:intron | 30.0% |
| TGTGATACAATTTGAATGGA+TGG | + | chr3_1:91747999-91748018 | Msa0387670:intron | 30.0% | |
| ATACAATTTGAATGGATGGA+TGG | + | chr3_1:91748003-91748022 | Msa0387670:intron | 30.0% | |
| !! | CATTGTTTCTCTTTTTCTTC+GGG | + | chr3_1:91748217-91748236 | Msa0387670:intron | 30.0% |
| GTTATCTCTTCCTACTTAAA+AGG | + | chr3_1:91748275-91748294 | Msa0387670:intron | 30.0% | |
| AAATGTGTGCATGATATTGA+TGG | + | chr3_1:91748701-91748720 | Msa0387670:CDS | 30.0% | |
| AATGTGTGCATGATATTGAT+GGG | + | chr3_1:91748702-91748721 | Msa0387670:CDS | 30.0% | |
| TATATCTCCGATGATAAACT+TGG | - | chr3_1:91748813-91748832 | None:intergenic | 30.0% | |
| ! | GAAGATGTTATGATGTGTTT+TGG | - | chr3_1:91748903-91748922 | None:intergenic | 30.0% |
| !! | ATAACTTAGGTTGATGAATC+AGG | - | chr3_1:91749041-91749060 | None:intergenic | 30.0% |
| AAATTATCACCAAAACAACC+TGG | - | chr3_1:91749080-91749099 | None:intergenic | 30.0% | |
| AATGCTTAGAAAAAAGGCTT+TGG | + | chr3_1:91749115-91749134 | Msa0387670:intron | 30.0% | |
| !! | TGTTTTTCAATTATCACCCA+TGG | - | chr3_1:91749230-91749249 | None:intergenic | 30.0% |
| GGTGATAATTGAAAAACAAG+TGG | + | chr3_1:91749232-91749251 | Msa0387670:CDS | 30.0% | |
| ATCTTCGTAGTTACGAAACT+CGG | - | chr3_1:91744965-91744984 | None:intergenic | 35.0% | |
| AAACTCTTGAAGATCTTCCA+TGG | - | chr3_1:91745100-91745119 | None:intergenic | 35.0% | |
| ! | ATCTTCAAGAGTTTGAGACA+CGG | + | chr3_1:91745106-91745125 | Msa0387670:CDS | 35.0% |
| CTATGATGCTGTTGTTGATA+CGG | + | chr3_1:91745233-91745252 | Msa0387670:CDS | 35.0% | |
| TTGGTTGTGTGTGGTTTAAA+TGG | + | chr3_1:91745491-91745510 | Msa0387670:intron | 35.0% | |
| TTCTTGTAAATAGGACTGGA+GGG | - | chr3_1:91745592-91745611 | None:intergenic | 35.0% | |
| TTTCTTGTAAATAGGACTGG+AGG | - | chr3_1:91745593-91745612 | None:intergenic | 35.0% | |
| TTTCTTATAATTAGGACCGG+AGG | + | chr3_1:91745708-91745727 | Msa0387670:intron | 35.0% | |
| TTCTTATAATTAGGACCGGA+GGG | + | chr3_1:91745709-91745728 | Msa0387670:intron | 35.0% | |
| !! | AATTGATTTGGGGGATTTGA+AGG | + | chr3_1:91745735-91745754 | Msa0387670:intron | 35.0% |
| !! | ATTGATTTGGGGGATTTGAA+GGG | + | chr3_1:91745736-91745755 | Msa0387670:intron | 35.0% |
| !! | ATCCATGGGTGTTTTTGTAA+GGG | + | chr3_1:91745783-91745802 | Msa0387670:intron | 35.0% |
| ! | TAGTTTTTGTCTGAACCTTG+AGG | + | chr3_1:91746375-91746394 | Msa0387670:intron | 35.0% |
| ! | CGCTGTGCTATTAGAAATAA+AGG | + | chr3_1:91746702-91746721 | Msa0387670:intron | 35.0% |
| TGTAATTCAAACATCTCTCG+GGG | + | chr3_1:91746757-91746776 | Msa0387670:intron | 35.0% | |
| TTTAAGCATCTCTTATGGGA+AGG | + | chr3_1:91746836-91746855 | Msa0387670:intron | 35.0% | |
| TTAAGCATCTCTTATGGGAA+GGG | + | chr3_1:91746837-91746856 | Msa0387670:intron | 35.0% | |
| TGTGTACCTTTATACTGTCT+TGG | + | chr3_1:91747122-91747141 | Msa0387670:CDS | 35.0% | |
| ATGTGACCAAGACAGTATAA+AGG | - | chr3_1:91747131-91747150 | None:intergenic | 35.0% | |
| TTTATACTGTCTTGGTCACA+TGG | + | chr3_1:91747130-91747149 | Msa0387670:CDS | 35.0% | |
| TTATACTGTCTTGGTCACAT+GGG | + | chr3_1:91747131-91747150 | Msa0387670:CDS | 35.0% | |
| CATTCTTGGATATTACAAGG+AGG | + | chr3_1:91747239-91747258 | Msa0387670:CDS | 35.0% | |
| AGGAGAATAGAATCACAATC+TGG | + | chr3_1:91747259-91747278 | Msa0387670:CDS | 35.0% | |
| AATAGAATCACAATCTGGAC+AGG | + | chr3_1:91747264-91747283 | Msa0387670:CDS | 35.0% | |
| !! | TTGTTTCTGTGCAATAGTAG+AGG | + | chr3_1:91747639-91747658 | Msa0387670:intron | 35.0% |
| !! | TGGTTCAATTTTGACAACCA+TGG | - | chr3_1:91747785-91747804 | None:intergenic | 35.0% |
| TTTCTGGATGTGCTAACAAA+AGG | + | chr3_1:91748059-91748078 | Msa0387670:intron | 35.0% | |
| TTCGGGTAGATCTATTGATA+TGG | + | chr3_1:91748234-91748253 | Msa0387670:intron | 35.0% | |
| ATAGATACAACCCTTCTAGT+AGG | + | chr3_1:91748370-91748389 | Msa0387670:intron | 35.0% | |
| TAGATACAACCCTTCTAGTA+GGG | + | chr3_1:91748371-91748390 | Msa0387670:intron | 35.0% | |
| !! | GGTTAGAGAAAGTATTAAGC+AGG | - | chr3_1:91748463-91748482 | None:intergenic | 35.0% |
| TCAACTCTTTATCTTCCACA+AGG | - | chr3_1:91748671-91748690 | None:intergenic | 35.0% | |
| GTGGAAGATAAAGAGTTGAA+AGG | + | chr3_1:91748672-91748691 | Msa0387670:intron | 35.0% | |
| AAAAACTCAACAGCTGTTGA+TGG | - | chr3_1:91748750-91748769 | None:intergenic | 35.0% | |
| TATCATCGGAGATATATACC+AGG | + | chr3_1:91748817-91748836 | Msa0387670:CDS | 35.0% | |
| ATCATCGGAGATATATACCA+GGG | + | chr3_1:91748818-91748837 | Msa0387670:CDS | 35.0% | |
| CACATCATAACATCTTCAAC+TGG | + | chr3_1:91748906-91748925 | Msa0387670:CDS | 35.0% | |
| ACCCACAATGCTTAGAAAAA+AGG | + | chr3_1:91749109-91749128 | Msa0387670:intron | 35.0% | |
| !!! | GCCTTTTTTCTAAGCATTGT+GGG | - | chr3_1:91749113-91749132 | None:intergenic | 35.0% |
| !!! | AGCCTTTTTTCTAAGCATTG+TGG | - | chr3_1:91749114-91749133 | None:intergenic | 35.0% |
| TATACAGAATTCTCTTGCCT+AGG | - | chr3_1:91749150-91749169 | None:intergenic | 35.0% | |
| AACTGCATGTCTTCGTTCTT+CGG | - | chr3_1:91744910-91744929 | None:intergenic | 40.0% | |
| GTTAATCGTTCACGAACAGA+AGG | + | chr3_1:91744927-91744946 | Msa0387670:CDS | 40.0% | |
| CAACAGCATCATAGAAACGA+AGG | - | chr3_1:91745227-91745246 | None:intergenic | 40.0% | |
| ! | AGACATTGATTGGTTGTGTG+TGG | + | chr3_1:91745482-91745501 | Msa0387670:intron | 40.0% |
| TTCCATCGTTATGCATCCAT+GGG | + | chr3_1:91745769-91745788 | Msa0387670:intron | 40.0% | |
| !! | CATCCATGGGTGTTTTTGTA+AGG | + | chr3_1:91745782-91745801 | Msa0387670:intron | 40.0% |
| ATCCCTTACAAAAACACCCA+TGG | - | chr3_1:91745788-91745807 | None:intergenic | 40.0% | |
| TCGGTACTACTTTAACGCAA+TGG | - | chr3_1:91745917-91745936 | None:intergenic | 40.0% | |
| ! | TCGATGAAAATCGACTCACT+TGG | + | chr3_1:91746275-91746294 | Msa0387670:intron | 40.0% |
| GTAATTCAAACATCTCTCGG+GGG | + | chr3_1:91746758-91746777 | Msa0387670:intron | 40.0% | |
| ATGTTTGACATTAGAGGGGA+AGG | + | chr3_1:91746804-91746823 | Msa0387670:intron | 40.0% | |
| TGTTTGACATTAGAGGGGAA+GGG | + | chr3_1:91746805-91746824 | Msa0387670:intron | 40.0% | |
| ATCACAATCTGGACAGGAAA+TGG | + | chr3_1:91747270-91747289 | Msa0387670:CDS | 40.0% | |
| ! | AAACAAACCTTCTGGAGAAC+TGG | - | chr3_1:91747625-91747644 | None:intergenic | 40.0% |
| TTGCACAGAAACAAACCTTC+TGG | - | chr3_1:91747633-91747652 | None:intergenic | 40.0% | |
| AGATCCTAACAGAGTCACAA+GGG | - | chr3_1:91747756-91747775 | None:intergenic | 40.0% | |
| AAGATCCTAACAGAGTCACA+AGG | - | chr3_1:91747757-91747776 | None:intergenic | 40.0% | |
| TTGTGACTCTGTTAGGATCT+TGG | + | chr3_1:91747756-91747775 | Msa0387670:intron | 40.0% | |
| ! | TGTTAGGATCTTGGTAACCA+TGG | + | chr3_1:91747765-91747784 | Msa0387670:intron | 40.0% |
| AGAAGCTGACATGATTCTAC+TGG | - | chr3_1:91747847-91747866 | None:intergenic | 40.0% | |
| AGAATCATGTCAGCTTCTAC+TGG | + | chr3_1:91747849-91747868 | Msa0387670:intron | 40.0% | |
| CACTCATCTCAAAAGATGCA+GGG | - | chr3_1:91747976-91747995 | None:intergenic | 40.0% | |
| !!! | CTGCATCTTTTGAGATGAGT+GGG | + | chr3_1:91747975-91747994 | Msa0387670:intron | 40.0% |
| GGGCTGTGATACAATTTGAA+TGG | + | chr3_1:91747995-91748014 | Msa0387670:intron | 40.0% | |
| ACAAAAGGAATTCGACTGCT+TGG | + | chr3_1:91748074-91748093 | Msa0387670:intron | 40.0% | |
| AGATACAACCCTTCTAGTAG+GGG | + | chr3_1:91748372-91748391 | Msa0387670:intron | 40.0% | |
| TCTAGGTAGAACTTGCGAAA+TGG | + | chr3_1:91748432-91748451 | Msa0387670:intron | 40.0% | |
| CTAGGTAGAACTTGCGAAAT+GGG | + | chr3_1:91748433-91748452 | Msa0387670:intron | 40.0% | |
| TAGGTAGAACTTGCGAAATG+GGG | + | chr3_1:91748434-91748453 | Msa0387670:intron | 40.0% | |
| TGATAAATGGGTGTAGAGCA+TGG | - | chr3_1:91748531-91748550 | None:intergenic | 40.0% | |
| AACAATTGCACACTGAGTGA+AGG | - | chr3_1:91748570-91748589 | None:intergenic | 40.0% | |
| TCATCGGAGATATATACCAG+GGG | + | chr3_1:91748819-91748838 | Msa0387670:CDS | 40.0% | |
| CATCATGTTGCAAACTGAGA+GGG | + | chr3_1:91748845-91748864 | Msa0387670:CDS | 40.0% | |
| TCATAACATCTTCAACTGGC+AGG | + | chr3_1:91748910-91748929 | Msa0387670:CDS | 40.0% | |
| ! | ACAAAGCTTCCAGGTTGTTT+TGG | + | chr3_1:91749068-91749087 | Msa0387670:intron | 40.0% |
| AGACAGTGAAGAGGTTTGAA+TGG | - | chr3_1:91749198-91749217 | None:intergenic | 40.0% | |
| !! | GGTTTGTTGAGAAGCTGTGA+GGG | - | chr3_1:91744875-91744894 | None:intergenic | 45.0% |
| !! | GTTCTTCGGTGTCATGGTTT+CGG | - | chr3_1:91744896-91744915 | None:intergenic | 45.0% |
| GTAACTACGAAGATGACGCT+TGG | + | chr3_1:91744971-91744990 | Msa0387670:CDS | 45.0% | |
| TCCTTCCAACGTAACACTGA+CGG | - | chr3_1:91745001-91745020 | None:intergenic | 45.0% | |
| !! | ACCAGGGTTTTTCAACTCCA+TGG | + | chr3_1:91745080-91745099 | Msa0387670:CDS | 45.0% |
| TCCATGGAGTTGAAAAACCC+TGG | - | chr3_1:91745084-91745103 | None:intergenic | 45.0% | |
| GTTCAGACCTCTTTCTGTTC+AGG | + | chr3_1:91745128-91745147 | Msa0387670:CDS | 45.0% | |
| ! | ACCTCTTTCTGTTCAGGTTC+AGG | + | chr3_1:91745134-91745153 | Msa0387670:CDS | 45.0% |
| TCCTGAACCTGAACAGAAAG+AGG | - | chr3_1:91745138-91745157 | None:intergenic | 45.0% | |
| GACTGGAGGGAGTAATATAC+AGG | - | chr3_1:91745579-91745598 | None:intergenic | 45.0% | |
| ACCGGAGGGAGTAATTGATT+TGG | + | chr3_1:91745723-91745742 | Msa0387670:intron | 45.0% | |
| CCCAAATCAATTACTCCCTC+CGG | - | chr3_1:91745727-91745746 | None:intergenic | 45.0% | |
| ! | CCGGAGGGAGTAATTGATTT+GGG | + | chr3_1:91745724-91745743 | Msa0387670:intron | 45.0% |
| !! | CGGAGGGAGTAATTGATTTG+GGG | + | chr3_1:91745725-91745744 | Msa0387670:intron | 45.0% |
| !! | GGAGGGAGTAATTGATTTGG+GGG | + | chr3_1:91745726-91745745 | Msa0387670:intron | 45.0% |
| GTTCCATCGTTATGCATCCA+TGG | + | chr3_1:91745768-91745787 | Msa0387670:intron | 45.0% | |
| TGACTAGCAGTGCACAATCA+AGG | + | chr3_1:91746094-91746113 | Msa0387670:intron | 45.0% | |
| GATTGTGTGTTCAACTCTCG+CGG | + | chr3_1:91746316-91746335 | Msa0387670:intron | 45.0% | |
| AGCACAGCGACCAAAATGTA+AGG | - | chr3_1:91746691-91746710 | None:intergenic | 45.0% | |
| GTTTGACATTAGAGGGGAAG+GGG | + | chr3_1:91746806-91746825 | Msa0387670:intron | 45.0% | |
| AGCTTTGCATTGCCATTCTC+TGG | + | chr3_1:91746934-91746953 | Msa0387670:intron | 45.0% | |
| GCTTTGCATTGCCATTCTCT+GGG | + | chr3_1:91746935-91746954 | Msa0387670:intron | 45.0% | |
| ACAGCAGTTATCCCAGAGAA+TGG | - | chr3_1:91746949-91746968 | None:intergenic | 45.0% | |
| GCTGGATCATACTCTAGTAC+AGG | - | chr3_1:91747211-91747230 | None:intergenic | 45.0% | |
| ACTAGAGTATGATCCAGCTG+TGG | + | chr3_1:91747213-91747232 | Msa0387670:CDS | 45.0% | |
| ACAATCTGGACAGGAAATGG+TGG | + | chr3_1:91747273-91747292 | Msa0387670:CDS | 45.0% | |
| ! | AGGTGCCAAGCAAACTGTTT+TGG | + | chr3_1:91747557-91747576 | Msa0387670:CDS | 45.0% |
| ! | GGTGCCAAGCAAACTGTTTT+GGG | + | chr3_1:91747558-91747577 | Msa0387670:CDS | 45.0% |
| ATTGCCCTTGTGACTCTGTT+AGG | + | chr3_1:91747749-91747768 | Msa0387670:intron | 45.0% | |
| CTGACATGATTCTACTGGTC+TGG | - | chr3_1:91747842-91747861 | None:intergenic | 45.0% | |
| CCACTCATCTCAAAAGATGC+AGG | - | chr3_1:91747977-91747996 | None:intergenic | 45.0% | |
| !!! | CCTGCATCTTTTGAGATGAG+TGG | + | chr3_1:91747974-91747993 | Msa0387670:intron | 45.0% |
| GATACAACCCTTCTAGTAGG+GGG | + | chr3_1:91748373-91748392 | Msa0387670:intron | 45.0% | |
| GTTCTACCTAGAACCAAGCA+AGG | - | chr3_1:91748424-91748443 | None:intergenic | 45.0% | |
| TAAATGGGTGTAGAGCATGG+TGG | - | chr3_1:91748528-91748547 | None:intergenic | 45.0% | |
| !! | TTTGGTTCTAGTTGGCCTTG+TGG | + | chr3_1:91748653-91748672 | Msa0387670:intron | 45.0% |
| CCTCTCAGTTTGCAACATGA+TGG | - | chr3_1:91748847-91748866 | None:intergenic | 45.0% | |
| CCATCATGTTGCAAACTGAG+AGG | + | chr3_1:91748844-91748863 | Msa0387670:CDS | 45.0% | |
| CCTGAAAACAGACAGTGAAG+AGG | - | chr3_1:91749207-91749226 | None:intergenic | 45.0% | |
| ! | CCTCTTCACTGTCTGTTTTC+AGG | + | chr3_1:91749204-91749223 | Msa0387670:intron | 45.0% |
| !! | ACTGTCTGTTTTCAGGCCAT+GGG | + | chr3_1:91749211-91749230 | Msa0387670:intron | 45.0% |
| GACGTCGCGTTTACTAGGTT+GGG | - | chr3_1:91744845-91744864 | None:intergenic | 50.0% | |
| AACACGACGTCGCGTTTACT+AGG | - | chr3_1:91744850-91744869 | None:intergenic | 50.0% | |
| !! | CGGTTTGTTGAGAAGCTGTG+AGG | - | chr3_1:91744876-91744895 | None:intergenic | 50.0% |
| !! | GTCTTCGTTCTTCGGTGTCA+TGG | - | chr3_1:91744902-91744921 | None:intergenic | 50.0% |
| GTACACCGTCAGTGTTACGT+TGG | + | chr3_1:91744993-91745012 | Msa0387670:CDS | 50.0% | |
| ACCGTCAGTGTTACGTTGGA+AGG | + | chr3_1:91744997-91745016 | Msa0387670:CDS | 50.0% | |
| AGGTTCAGGATCACGAGTGT+CGG | + | chr3_1:91745148-91745167 | Msa0387670:CDS | 50.0% | |
| GAAGCACAAACCCTAACACC+TGG | - | chr3_1:91745183-91745202 | None:intergenic | 50.0% | |
| TGTTAGGGTTTGTGCTTCGC+AGG | + | chr3_1:91745185-91745204 | Msa0387670:CDS | 50.0% | |
| CACCCATGGATGCATAACGA+TGG | - | chr3_1:91745774-91745793 | None:intergenic | 50.0% | |
| TCGGATCAAGAGAGACCTCA+AGG | - | chr3_1:91746393-91746412 | None:intergenic | 50.0% | |
| !! | GTGGAGAAAAGGGGTATTGC+TGG | - | chr3_1:91746660-91746679 | None:intergenic | 50.0% |
| ATTCAAACATCTCTCGGGGG+AGG | + | chr3_1:91746761-91746780 | Msa0387670:intron | 50.0% | |
| ! | TAGCAGCAGCATCTAGGATC+AGG | + | chr3_1:91746968-91746987 | Msa0387670:intron | 50.0% |
| TGGTCACATGGGCCAAATGT+TGG | + | chr3_1:91747142-91747161 | Msa0387670:CDS | 50.0% | |
| ACTCTAGTACAGGCTGCACA+AGG | - | chr3_1:91747201-91747220 | None:intergenic | 50.0% | |
| TCCAGCTGTGGCTTCATTCT+TGG | + | chr3_1:91747225-91747244 | Msa0387670:CDS | 50.0% | |
| TCCAAGAATGAAGCCACAGC+TGG | - | chr3_1:91747229-91747248 | None:intergenic | 50.0% | |
| ! | ATGGTGGTGTACTGCAACAC+AGG | + | chr3_1:91747289-91747308 | Msa0387670:CDS | 50.0% |
| ! | GTTTTCGCTGGAACTGGAGA+GGG | - | chr3_1:91747497-91747516 | None:intergenic | 50.0% |
| ! | AAGCGATCTGCTTTGGGTAC+CGG | + | chr3_1:91747525-91747544 | Msa0387670:CDS | 50.0% |
| !! | TTGGGTACCGGTTCTTCTGA+AGG | + | chr3_1:91747537-91747556 | Msa0387670:CDS | 50.0% |
| CTTGGCACCTTCAGAAGAAC+CGG | - | chr3_1:91747547-91747566 | None:intergenic | 50.0% | |
| ! | GGCACCCAAAACAGTTTGCT+TGG | - | chr3_1:91747565-91747584 | None:intergenic | 50.0% |
| CTCAAAAGATGCAGGGCAAG+AGG | - | chr3_1:91747969-91747988 | None:intergenic | 50.0% | |
| AAGACCACCCCCTACTAGAA+GGG | - | chr3_1:91748383-91748402 | None:intergenic | 50.0% | |
| TAAGACCACCCCCTACTAGA+AGG | - | chr3_1:91748384-91748403 | None:intergenic | 50.0% | |
| ! | AGCATGGTGGAGAGCAAAGA+AGG | - | chr3_1:91748515-91748534 | None:intergenic | 50.0% |
| !! | CACTGTCTGTTTTCAGGCCA+TGG | + | chr3_1:91749210-91749229 | Msa0387670:intron | 50.0% |
| CGACGTCGCGTTTACTAGGT+TGG | - | chr3_1:91744846-91744865 | None:intergenic | 55.0% | |
| GGTTCAGGATCACGAGTGTC+GGG | + | chr3_1:91745149-91745168 | Msa0387670:CDS | 55.0% | |
| ! | GGAGCTGGTTCCAGGTGTTA+GGG | + | chr3_1:91745170-91745189 | Msa0387670:CDS | 55.0% |
| CAACTCTCGCGGTTAGTGTG+AGG | + | chr3_1:91746327-91746346 | Msa0387670:intron | 55.0% | |
| CTGCTGTAGCAGCAGCATCT+AGG | + | chr3_1:91746962-91746981 | Msa0387670:intron | 55.0% | |
| ! | CGTTTTCGCTGGAACTGGAG+AGG | - | chr3_1:91747498-91747517 | None:intergenic | 55.0% |
| TCCAGTTCCAGCGAAAACGC+CGG | + | chr3_1:91747499-91747518 | Msa0387670:intron | 55.0% | |
| GGTACCCAAAGCAGATCGCT+TGG | - | chr3_1:91747526-91747545 | None:intergenic | 55.0% | |
| TTGGGTGCCAGTTCTCCTGA+AGG | + | chr3_1:91747576-91747595 | Msa0387670:CDS | 55.0% | |
| TGGGTGCCAGTTCTCCTGAA+GGG | + | chr3_1:91747577-91747596 | Msa0387670:CDS | 55.0% | |
| ! | AGGGGCCAAGCGATCTGTTT+TGG | + | chr3_1:91747596-91747615 | Msa0387670:CDS | 55.0% |
| ! | GGGGCCAAGCGATCTGTTTT+GGG | + | chr3_1:91747597-91747616 | Msa0387670:CDS | 55.0% |
| GGCACCCAAAACAGATCGCT+TGG | - | chr3_1:91747604-91747623 | None:intergenic | 55.0% | |
| TTGGGTGCCAGTTCTCCAGA+AGG | + | chr3_1:91747615-91747634 | Msa0387670:CDS | 55.0% | |
| ACAACCCTTCTAGTAGGGGG+TGG | + | chr3_1:91748376-91748395 | Msa0387670:intron | 55.0% | |
| ! | GTGGTCTTACCCTGGGACTT+GGG | + | chr3_1:91748395-91748414 | Msa0387670:intron | 55.0% |
| ! | GGGAGACCTTGCTTGGTTCT+AGG | + | chr3_1:91748415-91748434 | Msa0387670:intron | 55.0% |
| TTGCAACATGATGGCACCCC+TGG | - | chr3_1:91748838-91748857 | None:intergenic | 55.0% | |
| !! | GGCTTTGGATCTGCAAGCCT+AGG | + | chr3_1:91749130-91749149 | Msa0387670:intron | 55.0% |
| ! | GGGAGCTGGTTCCAGGTGTT+AGG | + | chr3_1:91745169-91745188 | Msa0387670:CDS | 60.0% |
| CCAGTTCCAGCGAAAACGCC+GGG | + | chr3_1:91747500-91747519 | Msa0387670:intron | 60.0% | |
| CCAAAGCAGATCGCTTGGCC+CGG | - | chr3_1:91747521-91747540 | None:intergenic | 60.0% | |
| CGGGCCAAGCGATCTGCTTT+GGG | + | chr3_1:91747519-91747538 | Msa0387670:CDS | 60.0% | |
| GGGTGCCAGTTCTCCTGAAG+GGG | + | chr3_1:91747578-91747597 | Msa0387670:CDS | 60.0% | |
| CTTGGCCCCTTCAGGAGAAC+TGG | - | chr3_1:91747586-91747605 | None:intergenic | 60.0% | |
| ACAGATCGCTTGGCCCCTTC+AGG | - | chr3_1:91747594-91747613 | None:intergenic | 60.0% | |
| ! | AGTAGGGGGTGGTCTTACCC+TGG | + | chr3_1:91748387-91748406 | Msa0387670:intron | 60.0% |
| ! | GTAGGGGGTGGTCTTACCCT+GGG | + | chr3_1:91748388-91748407 | Msa0387670:intron | 60.0% |
| ! | GGTGGTCTTACCCTGGGACT+TGG | + | chr3_1:91748394-91748413 | Msa0387670:intron | 60.0% |
| GCAAGGTCTCCCAAGTCCCA+GGG | - | chr3_1:91748407-91748426 | None:intergenic | 60.0% | |
| AGCAAGGTCTCCCAAGTCCC+AGG | - | chr3_1:91748408-91748427 | None:intergenic | 60.0% | |
| GGGACTTGGGAGACCTTGCT+TGG | + | chr3_1:91748408-91748427 | Msa0387670:intron | 60.0% | |
| !! | GGATCACGAGTGTCGGGAGC+TGG | + | chr3_1:91745155-91745174 | Msa0387670:CDS | 65.0% |
| !! | GAGTGTCGGGAGCTGGTTCC+AGG | + | chr3_1:91745162-91745181 | Msa0387670:CDS | 65.0% |
| ! | CCCGGCGTTTTCGCTGGAAC+TGG | - | chr3_1:91747503-91747522 | None:intergenic | 65.0% |
| CCGGGCCAAGCGATCTGCTT+TGG | + | chr3_1:91747518-91747537 | Msa0387670:CDS | 65.0% | |
| ! | GCTTGGCCCGGCGTTTTCGC+TGG | - | chr3_1:91747509-91747528 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 91744826 | 91749304 | 91744826 | ID=Msa0387670;Name=Msa0387670 |
| chr3_1 | mRNA | 91744826 | 91749304 | 91744826 | ID=Msa0387670-mRNA-1;Parent=Msa0387670;Name=Msa0387670-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.5|0.42|1|0.5|0.28|7|0|393 |
| chr3_1 | exon | 91744826 | 91745035 | 91744826 | ID=Msa0387670-mRNA-1:exon:25631;Parent=Msa0387670-mRNA-1 |
| chr3_1 | exon | 91745042 | 91745254 | 91745042 | ID=Msa0387670-mRNA-1:exon:25632;Parent=Msa0387670-mRNA-1 |
| chr3_1 | exon | 91747079 | 91747201 | 91747079 | ID=Msa0387670-mRNA-1:exon:25633;Parent=Msa0387670-mRNA-1 |
| chr3_1 | exon | 91747208 | 91747381 | 91747208 | ID=Msa0387670-mRNA-1:exon:25634;Parent=Msa0387670-mRNA-1 |
| chr3_1 | exon | 91747504 | 91747636 | 91747504 | ID=Msa0387670-mRNA-1:exon:25635;Parent=Msa0387670-mRNA-1 |
| chr3_1 | exon | 91748685 | 91748931 | 91748685 | ID=Msa0387670-mRNA-1:exon:25636;Parent=Msa0387670-mRNA-1 |
| chr3_1 | exon | 91749226 | 91749304 | 91749226 | ID=Msa0387670-mRNA-1:exon:25637;Parent=Msa0387670-mRNA-1 |
| chr3_1 | CDS | 91744826 | 91745035 | 91744826 | ID=Msa0387670-mRNA-1:cds;Parent=Msa0387670-mRNA-1 |
| chr3_1 | CDS | 91745042 | 91745254 | 91745042 | ID=Msa0387670-mRNA-1:cds;Parent=Msa0387670-mRNA-1 |
| chr3_1 | CDS | 91747079 | 91747201 | 91747079 | ID=Msa0387670-mRNA-1:cds;Parent=Msa0387670-mRNA-1 |
| chr3_1 | CDS | 91747208 | 91747381 | 91747208 | ID=Msa0387670-mRNA-1:cds;Parent=Msa0387670-mRNA-1 |
| chr3_1 | CDS | 91747504 | 91747636 | 91747504 | ID=Msa0387670-mRNA-1:cds;Parent=Msa0387670-mRNA-1 |
| chr3_1 | CDS | 91748685 | 91748931 | 91748685 | ID=Msa0387670-mRNA-1:cds;Parent=Msa0387670-mRNA-1 |
| chr3_1 | CDS | 91749226 | 91749304 | 91749226 | ID=Msa0387670-mRNA-1:cds;Parent=Msa0387670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
