Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396540 | XP_003598626.1 | 94.268 | 157 | 6 | 1 | 1 | 154 | 1 | 157 | 1.37e-102 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396540 | sp|Q8L7A4|AGD11_ARATH | 60.959 | 146 | 55 | 2 | 11 | 154 | 8 | 153 | 9.20e-57 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396540 | G7IYV8 | 94.268 | 157 | 6 | 1 | 1 | 154 | 1 | 157 | 6.55e-103 | 309 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0236070 | Msa0396540 | 0.804075 | 2.570863e-49 | -8.615850e-47 |
| Msa0396540 | Msa0444080 | 0.832985 | 6.913178e-56 | -8.615850e-47 |
| Msa0396540 | Msa0491540 | 0.808962 | 2.393350e-50 | -8.615850e-47 |
| Msa0349700 | Msa0396540 | 0.802613 | 5.161810e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396540 | MtrunA17_Chr3g0083541 | 94.268 | 157 | 6 | 1 | 1 | 154 | 1 | 157 | 1.26e-106 | 309 |
| Msa0396540 | MtrunA17_Chr8g0352731 | 79.000 | 100 | 21 | 0 | 55 | 154 | 1 | 100 | 3.49e-57 | 177 |
| Msa0396540 | MtrunA17_Chr2g0292461 | 51.402 | 107 | 52 | 0 | 48 | 154 | 18 | 124 | 5.90e-39 | 134 |
| Msa0396540 | MtrunA17_Chr6g0481511 | 52.381 | 84 | 39 | 1 | 51 | 134 | 36 | 118 | 2.32e-24 | 94.7 |
| Msa0396540 | MtrunA17_Chr2g0318391 | 41.121 | 107 | 62 | 1 | 33 | 139 | 1 | 106 | 3.18e-22 | 91.7 |
| Msa0396540 | MtrunA17_Chr8g0360731 | 42.718 | 103 | 58 | 1 | 33 | 135 | 1 | 102 | 7.04e-22 | 90.5 |
| Msa0396540 | MtrunA17_Chr8g0385781 | 40.157 | 127 | 51 | 3 | 51 | 153 | 497 | 622 | 3.68e-20 | 85.9 |
| Msa0396540 | MtrunA17_Chr8g0380371 | 58.491 | 53 | 22 | 0 | 48 | 100 | 9 | 61 | 3.93e-20 | 79.0 |
| Msa0396540 | MtrunA17_Chr7g0221441 | 50.575 | 87 | 40 | 2 | 51 | 135 | 505 | 590 | 8.33e-20 | 85.1 |
| Msa0396540 | MtrunA17_Chr8g0366741 | 51.429 | 70 | 33 | 1 | 54 | 123 | 16 | 84 | 1.81e-19 | 83.6 |
| Msa0396540 | MtrunA17_Chr1g0182571 | 48.052 | 77 | 39 | 1 | 50 | 126 | 6 | 81 | 1.97e-19 | 83.6 |
| Msa0396540 | MtrunA17_Chr8g0366731 | 51.429 | 70 | 33 | 1 | 54 | 123 | 16 | 84 | 3.68e-19 | 82.8 |
| Msa0396540 | MtrunA17_Chr7g0262921 | 48.052 | 77 | 39 | 1 | 50 | 126 | 6 | 81 | 8.41e-19 | 82.0 |
| Msa0396540 | MtrunA17_Chr3g0131671 | 45.455 | 88 | 45 | 2 | 48 | 133 | 497 | 583 | 7.19e-18 | 79.3 |
| Msa0396540 | MtrunA17_Chr4g0037651 | 41.818 | 110 | 55 | 5 | 32 | 133 | 457 | 565 | 1.13e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396540 | AT3G07940.2 | 60.959 | 146 | 55 | 2 | 11 | 154 | 8 | 153 | 1.03e-58 | 184 |
| Msa0396540 | AT3G07940.1 | 60.959 | 146 | 55 | 2 | 11 | 154 | 8 | 153 | 9.35e-58 | 184 |
| Msa0396540 | AT4G05330.3 | 54.206 | 107 | 49 | 0 | 48 | 154 | 15 | 121 | 5.36e-40 | 137 |
| Msa0396540 | AT4G05330.1 | 54.206 | 107 | 49 | 0 | 48 | 154 | 15 | 121 | 5.36e-40 | 137 |
| Msa0396540 | AT4G21160.2 | 54.206 | 107 | 49 | 0 | 48 | 154 | 15 | 121 | 8.12e-40 | 137 |
| Msa0396540 | AT4G21160.3 | 54.206 | 107 | 49 | 0 | 48 | 154 | 15 | 121 | 8.12e-40 | 137 |
| Msa0396540 | AT4G21160.1 | 54.206 | 107 | 49 | 0 | 48 | 154 | 15 | 121 | 8.12e-40 | 137 |
| Msa0396540 | AT4G21160.4 | 54.206 | 107 | 49 | 0 | 48 | 154 | 15 | 121 | 8.12e-40 | 137 |
| Msa0396540 | AT4G05330.2 | 56.250 | 80 | 35 | 0 | 75 | 154 | 7 | 86 | 3.04e-27 | 103 |
| Msa0396540 | AT3G17660.4 | 42.424 | 99 | 56 | 1 | 51 | 149 | 19 | 116 | 2.15e-24 | 93.6 |
| Msa0396540 | AT3G17660.1 | 46.067 | 89 | 47 | 1 | 51 | 139 | 19 | 106 | 4.76e-24 | 94.0 |
| Msa0396540 | AT3G17660.2 | 42.424 | 99 | 56 | 1 | 51 | 149 | 19 | 116 | 8.71e-24 | 93.6 |
| Msa0396540 | AT5G54310.1 | 43.137 | 102 | 57 | 1 | 33 | 134 | 1 | 101 | 8.31e-22 | 90.9 |
| Msa0396540 | AT5G13300.1 | 46.789 | 109 | 52 | 3 | 29 | 135 | 485 | 589 | 2.39e-21 | 89.7 |
| Msa0396540 | AT5G61980.1 | 52.941 | 85 | 37 | 2 | 51 | 133 | 501 | 584 | 2.55e-20 | 87.0 |
| Msa0396540 | AT2G35210.2 | 48.611 | 72 | 36 | 1 | 51 | 122 | 13 | 83 | 7.32e-19 | 82.0 |
| Msa0396540 | AT2G35210.1 | 50.725 | 69 | 33 | 1 | 54 | 122 | 16 | 83 | 1.22e-18 | 81.6 |
| Msa0396540 | AT5G46750.1 | 50.725 | 69 | 33 | 1 | 54 | 122 | 16 | 83 | 1.95e-18 | 80.9 |
| Msa0396540 | AT2G37550.2 | 46.753 | 77 | 40 | 1 | 50 | 126 | 6 | 81 | 2.54e-18 | 80.9 |
| Msa0396540 | AT2G37550.1 | 46.753 | 77 | 40 | 1 | 50 | 126 | 6 | 81 | 2.54e-18 | 80.9 |
| Msa0396540 | AT3G53710.1 | 46.154 | 78 | 41 | 1 | 50 | 127 | 6 | 82 | 6.92e-18 | 79.7 |
| Msa0396540 | AT3G53710.3 | 46.154 | 78 | 41 | 1 | 50 | 127 | 6 | 82 | 6.92e-18 | 79.7 |
| Msa0396540 | AT3G53710.2 | 46.154 | 78 | 41 | 1 | 50 | 127 | 6 | 82 | 6.92e-18 | 79.7 |
| Msa0396540 | AT4G17890.2 | 49.275 | 69 | 34 | 1 | 54 | 122 | 19 | 86 | 1.08e-17 | 79.0 |
| Msa0396540 | AT4G17890.1 | 49.275 | 69 | 34 | 1 | 54 | 122 | 19 | 86 | 1.60e-17 | 78.6 |
| Msa0396540 | AT1G10870.1 | 33.143 | 175 | 84 | 5 | 11 | 153 | 413 | 586 | 1.92e-17 | 78.6 |
| Msa0396540 | AT3G17660.3 | 42.391 | 92 | 36 | 3 | 51 | 139 | 19 | 96 | 2.28e-17 | 75.9 |
| Msa0396540 | AT1G10870.2 | 36.620 | 142 | 70 | 4 | 11 | 133 | 413 | 553 | 2.47e-17 | 78.2 |
| Msa0396540 | AT1G60860.2 | 43.750 | 96 | 51 | 2 | 27 | 120 | 336 | 430 | 1.50e-16 | 75.9 |
| Msa0396540 | AT1G60860.3 | 43.750 | 96 | 51 | 2 | 27 | 120 | 276 | 370 | 1.50e-16 | 75.9 |
| Msa0396540 | AT1G60860.1 | 43.750 | 96 | 51 | 2 | 27 | 120 | 447 | 541 | 1.58e-16 | 75.9 |
Find 41 sgRNAs with CRISPR-Local
Find 392 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAATACTTACACCCATTT+TGG | 0.186231 | 3_2:-15066838 | None:intergenic |
| TATTTCCTCCACTTGAAATT+AGG | 0.226494 | 3_2:-15064435 | None:intergenic |
| TTTGTCAGAAATATATTCTT+TGG | 0.235295 | 3_2:+15064235 | Msa0396540:five_prime_UTR |
| ATAGTGACATTCCTTGATTT+TGG | 0.250360 | 3_2:+15064678 | Msa0396540:five_prime_UTR |
| GTTTCAAATATTTGAGGATA+TGG | 0.252120 | 3_2:+15064700 | Msa0396540:exon |
| GTGGATCATCAGAGCCAAAA+TGG | 0.335283 | 3_2:+15066824 | Msa0396540:CDS |
| TCAATGGAAGAATTCGGTTT+TGG | 0.341563 | 3_2:-15067900 | None:intergenic |
| ACGAACGTACCTTAGATATA+TGG | 0.348879 | 3_2:-15067663 | None:intergenic |
| AACATCAGGTCTTCAAGTCT+TGG | 0.381673 | 3_2:+15067592 | Msa0396540:intron |
| CCTAGGAGTCCATATATCTA+AGG | 0.390014 | 3_2:+15067654 | Msa0396540:CDS |
| AGAGAGCGATGGATGTTATC+TGG | 0.401047 | 3_2:+15066600 | Msa0396540:CDS |
| CGCTCCTCAATGGAAGAATT+CGG | 0.431409 | 3_2:-15067906 | None:intergenic |
| AGTCGATTCATTGGTCAACT+TGG | 0.444047 | 3_2:+15067818 | Msa0396540:CDS |
| TTTATTTGCATCAAGTGCTC+TGG | 0.459972 | 3_2:+15067619 | Msa0396540:CDS |
| GACAATCTGATGCGTCAAGC+AGG | 0.474603 | 3_2:+15066781 | Msa0396540:CDS |
| AAAATCAGAGCGCTCCTCAA+TGG | 0.477617 | 3_2:-15067916 | None:intergenic |
| AGACGAACAAGTCGATTCAT+TGG | 0.483436 | 3_2:+15067809 | Msa0396540:CDS |
| TCTGAAATCAATGGTATGAC+AGG | 0.489321 | 3_2:+15064743 | Msa0396540:CDS |
| TGTCACTGAATCTAGATGAA+TGG | 0.499000 | 3_2:+15067784 | Msa0396540:CDS |
| TGACTTTGAGAATTTAAACT+TGG | 0.501348 | 3_2:-15066576 | None:intergenic |
| AATATTTGAAACCAAAATCA+AGG | 0.504727 | 3_2:-15064689 | None:intergenic |
| TTTATCTTCATGCAGAGAAA+GGG | 0.506547 | 3_2:+15064627 | Msa0396540:intron |
| GATTCATTGGTCAACTTGGG+TGG | 0.513627 | 3_2:+15067822 | Msa0396540:CDS |
| CCTTAGATATATGGACTCCT+AGG | 0.529324 | 3_2:-15067654 | None:intergenic |
| GTCGATTCATTGGTCAACTT+GGG | 0.529688 | 3_2:+15067819 | Msa0396540:CDS |
| TGAAATTAGGCATGAGCCAA+TGG | 0.532679 | 3_2:-15064422 | None:intergenic |
| TGGATCATCAGAGCCAAAAT+GGG | 0.539189 | 3_2:+15066825 | Msa0396540:CDS |
| CAGTGCAAAAGAGATCATAA+AGG | 0.562906 | 3_2:-15066548 | None:intergenic |
| TGTAGAGAATAAGCTGCCAT+TGG | 0.563081 | 3_2:+15064406 | Msa0396540:intron |
| GATCACTAGGTCCACAGGAA+AGG | 0.571277 | 3_2:+15066755 | Msa0396540:intron |
| AACAAGTTCTGTGCTGATTG+TGG | 0.576035 | 3_2:+15066805 | Msa0396540:CDS |
| CTTCCGATCACTAGGTCCAC+AGG | 0.578366 | 3_2:+15066750 | Msa0396540:intron |
| AAAACCGAATTCTTCCATTG+AGG | 0.580396 | 3_2:+15067902 | Msa0396540:CDS |
| GGCTCATGCCTAATTTCAAG+TGG | 0.582598 | 3_2:+15064427 | Msa0396540:five_prime_UTR |
| TCTGGTATACATAGAAGCCT+AGG | 0.599149 | 3_2:+15067637 | Msa0396540:CDS |
| AGATTGTCTAACCTTTCCTG+TGG | 0.600164 | 3_2:-15066766 | None:intergenic |
| CTCAAAGTCAAAGAGAGCGA+TGG | 0.600889 | 3_2:+15066589 | Msa0396540:CDS |
| ACAATCTGATGCGTCAAGCA+GGG | 0.621759 | 3_2:+15066782 | Msa0396540:CDS |
| AGAAAGGGATGATAAATACA+TGG | 0.628093 | 3_2:+15064642 | Msa0396540:five_prime_UTR |
| AGGAATGTCACTATAATCTG+AGG | 0.645784 | 3_2:-15064669 | None:intergenic |
| TCATGCCTAATTTCAAGTGG+AGG | 0.646065 | 3_2:+15064430 | Msa0396540:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGAATTTTAAGTTAATT+AGG | + | chr3_2:15065600-15065619 | Msa0396540:intron | 10.0% |
| !!! | TTTGAATTTTAAGTTAATTA+GGG | + | chr3_2:15065601-15065620 | Msa0396540:intron | 10.0% |
| !! | AAAATTTATCAAAACTAAAT+TGG | - | chr3_2:15067118-15067137 | None:intergenic | 10.0% |
| !!! | TTTTGAATTTTAAGTTAATT+AGG | + | chr3_2:15065600-15065619 | Msa0396540:intron | 10.0% |
| !!! | TTTGAATTTTAAGTTAATTA+GGG | + | chr3_2:15065601-15065620 | Msa0396540:intron | 10.0% |
| !! | AAAATTTATCAAAACTAAAT+TGG | - | chr3_2:15067118-15067137 | None:intergenic | 10.0% |
| !!! | ATTAATAGGATAGTTTTTTT+TGG | + | chr3_2:15065659-15065678 | Msa0396540:intron | 15.0% |
| !! | ATAATAAATTATCTGTTATC+AGG | + | chr3_2:15065892-15065911 | Msa0396540:intron | 15.0% |
| !! | GATAAATGTAACAATTAAAA+GGG | - | chr3_2:15066633-15066652 | None:intergenic | 15.0% |
| !! | TGATAAATGTAACAATTAAA+AGG | - | chr3_2:15066634-15066653 | None:intergenic | 15.0% |
| !!! | ATTAATAGGATAGTTTTTTT+TGG | + | chr3_2:15065659-15065678 | Msa0396540:intron | 15.0% |
| !! | ATAATAAATTATCTGTTATC+AGG | + | chr3_2:15065892-15065911 | Msa0396540:intron | 15.0% |
| !! | GATAAATGTAACAATTAAAA+GGG | - | chr3_2:15066633-15066652 | None:intergenic | 15.0% |
| !! | TGATAAATGTAACAATTAAA+AGG | - | chr3_2:15066634-15066653 | None:intergenic | 15.0% |
| !! | TTTGTCAGAAATATATTCTT+TGG | + | chr3_2:15064235-15064254 | Msa0396540:five_prime_UTR | 20.0% |
| !!! | TGGTTTTTATGAATCAATAA+AGG | - | chr3_2:15064332-15064351 | None:intergenic | 20.0% |
| !! | GAAATATCAAAATCAAAACA+TGG | - | chr3_2:15064352-15064371 | None:intergenic | 20.0% |
| !!! | TGATTTTGATATTTCTCTTT+TGG | + | chr3_2:15064357-15064376 | Msa0396540:intron | 20.0% |
| !! | AAAATGTCATAATACAAGAT+TGG | - | chr3_2:15064544-15064563 | None:intergenic | 20.0% |
| !!! | AATATTTGAAACCAAAATCA+AGG | - | chr3_2:15064692-15064711 | None:intergenic | 20.0% |
| !!! | ATTTTGGTTTCAAATATTTG+AGG | + | chr3_2:15064694-15064713 | Msa0396540:five_prime_UTR | 20.0% |
| !!! | TTTTAAATTATTATCCGTGT+CGG | - | chr3_2:15064989-15065008 | None:intergenic | 20.0% |
| !! | TTCAGTGTAATTATATTTGT+CGG | - | chr3_2:15065481-15065500 | None:intergenic | 20.0% |
| !! | AACTATCCTATTAATCTATA+AGG | - | chr3_2:15065654-15065673 | None:intergenic | 20.0% |
| !!! | AATTTTTGTTCTGAATTTTG+AGG | + | chr3_2:15065692-15065711 | Msa0396540:intron | 20.0% |
| !!! | ATTTTTGTTCTGAATTTTGA+GGG | + | chr3_2:15065693-15065712 | Msa0396540:intron | 20.0% |
| !! | AAATTAAACATGATCTATGA+GGG | + | chr3_2:15065857-15065876 | Msa0396540:intron | 20.0% |
| !! | ACAGATAATTTATTATAGAC+AGG | - | chr3_2:15065888-15065907 | None:intergenic | 20.0% |
| !!! | TCCATTTTCTTAAATATTAC+TGG | - | chr3_2:15066096-15066115 | None:intergenic | 20.0% |
| !! | TACAAATGCTTAAAAACAAA+CGG | - | chr3_2:15066299-15066318 | None:intergenic | 20.0% |
| !! | AAATTAAATGTCTCAATTGT+AGG | + | chr3_2:15066510-15066529 | Msa0396540:intron | 20.0% |
| !! | AATTAAATGTCTCAATTGTA+GGG | + | chr3_2:15066511-15066530 | Msa0396540:intron | 20.0% |
| !!! | TAATTTGTTTATCCAAACAT+GGG | - | chr3_2:15067160-15067179 | None:intergenic | 20.0% |
| !!! | TTAATTTGTTTATCCAAACA+TGG | - | chr3_2:15067161-15067180 | None:intergenic | 20.0% |
| !! | AAAATAAAAAAATTTGTCCG+AGG | - | chr3_2:15067428-15067447 | None:intergenic | 20.0% |
| !! | TTTGTCAGAAATATATTCTT+TGG | + | chr3_2:15064235-15064254 | Msa0396540:five_prime_UTR | 20.0% |
| !!! | TGGTTTTTATGAATCAATAA+AGG | - | chr3_2:15064332-15064351 | None:intergenic | 20.0% |
| !! | GAAATATCAAAATCAAAACA+TGG | - | chr3_2:15064352-15064371 | None:intergenic | 20.0% |
| !!! | TGATTTTGATATTTCTCTTT+TGG | + | chr3_2:15064357-15064376 | Msa0396540:intron | 20.0% |
| !! | AAAATGTCATAATACAAGAT+TGG | - | chr3_2:15064544-15064563 | None:intergenic | 20.0% |
| !!! | AATATTTGAAACCAAAATCA+AGG | - | chr3_2:15064692-15064711 | None:intergenic | 20.0% |
| !!! | ATTTTGGTTTCAAATATTTG+AGG | + | chr3_2:15064694-15064713 | Msa0396540:five_prime_UTR | 20.0% |
| !!! | TTTTAAATTATTATCCGTGT+CGG | - | chr3_2:15064989-15065008 | None:intergenic | 20.0% |
| !! | TTCAGTGTAATTATATTTGT+CGG | - | chr3_2:15065481-15065500 | None:intergenic | 20.0% |
| !! | AACTATCCTATTAATCTATA+AGG | - | chr3_2:15065654-15065673 | None:intergenic | 20.0% |
| !!! | AATTTTTGTTCTGAATTTTG+AGG | + | chr3_2:15065692-15065711 | Msa0396540:intron | 20.0% |
| !!! | ATTTTTGTTCTGAATTTTGA+GGG | + | chr3_2:15065693-15065712 | Msa0396540:intron | 20.0% |
| !! | AAATTAAACATGATCTATGA+GGG | + | chr3_2:15065857-15065876 | Msa0396540:intron | 20.0% |
| !! | ACAGATAATTTATTATAGAC+AGG | - | chr3_2:15065888-15065907 | None:intergenic | 20.0% |
| !!! | TCCATTTTCTTAAATATTAC+TGG | - | chr3_2:15066096-15066115 | None:intergenic | 20.0% |
| !! | TACAAATGCTTAAAAACAAA+CGG | - | chr3_2:15066299-15066318 | None:intergenic | 20.0% |
| !! | AAATTAAATGTCTCAATTGT+AGG | + | chr3_2:15066510-15066529 | Msa0396540:intron | 20.0% |
| !! | AATTAAATGTCTCAATTGTA+GGG | + | chr3_2:15066511-15066530 | Msa0396540:intron | 20.0% |
| !!! | TAATTTGTTTATCCAAACAT+GGG | - | chr3_2:15067160-15067179 | None:intergenic | 20.0% |
| !!! | TTAATTTGTTTATCCAAACA+TGG | - | chr3_2:15067161-15067180 | None:intergenic | 20.0% |
| !! | AAAATAAAAAAATTTGTCCG+AGG | - | chr3_2:15067428-15067447 | None:intergenic | 20.0% |
| !!! | TTTTTGAAATCAATCTCTGA+GGG | - | chr3_2:15064272-15064291 | None:intergenic | 25.0% |
| !!! | TTTTTTGAAATCAATCTCTG+AGG | - | chr3_2:15064273-15064292 | None:intergenic | 25.0% |
| ! | GATTGGAAAAACATGAAAAA+TGG | - | chr3_2:15064527-15064546 | None:intergenic | 25.0% |
| ! | GTTTCAAATATTTGAGGATA+TGG | + | chr3_2:15064700-15064719 | Msa0396540:exon | 25.0% |
| !! | CAAGAAAAATCTGAAATCAA+TGG | + | chr3_2:15064734-15064753 | Msa0396540:CDS | 25.0% |
| ! | ATTCATTATATCACTTCGAT+GGG | - | chr3_2:15064809-15064828 | None:intergenic | 25.0% |
| ! | AGATAATTCAGTGTAATCAT+AGG | + | chr3_2:15065014-15065033 | Msa0396540:intron | 25.0% |
| ! | TGAGTTCCTTATAGATTAAT+AGG | + | chr3_2:15065645-15065664 | Msa0396540:intron | 25.0% |
| !! | TTTAATTTCTTTCCTTGAGA+AGG | - | chr3_2:15065845-15065864 | None:intergenic | 25.0% |
| ! | GAAATTAAACATGATCTATG+AGG | + | chr3_2:15065856-15065875 | Msa0396540:intron | 25.0% |
| ! | GCCAGTAATATTTAAGAAAA+TGG | + | chr3_2:15066092-15066111 | Msa0396540:intron | 25.0% |
| ! | TAGTAAAGCAGAAACAATAA+AGG | - | chr3_2:15066216-15066235 | None:intergenic | 25.0% |
| !!! | ATTTGTAAGTTGAGTTTTGA+AGG | + | chr3_2:15066312-15066331 | Msa0396540:intron | 25.0% |
| !!! | TTTGTAAGTTGAGTTTTGAA+GGG | + | chr3_2:15066313-15066332 | Msa0396540:intron | 25.0% |
| !! | TGACTTTGAGAATTTAAACT+TGG | - | chr3_2:15066245-15066264 | None:intergenic | 25.0% |
| ! | ATCAAATAACCAACATTATC+CGG | + | chr3_2:15066650-15066669 | Msa0396540:intron | 25.0% |
| !!! | TTGTTTGAAAAGCATTATCT+TGG | + | chr3_2:15066907-15066926 | Msa0396540:intron | 25.0% |
| !!! | TTTTTTCAGATAAGTGCTTA+TGG | + | chr3_2:15067255-15067274 | Msa0396540:intron | 25.0% |
| ! | ACATGATTTGACATGATTAT+AGG | + | chr3_2:15067758-15067777 | Msa0396540:intron | 25.0% |
| !!! | TTTGGTTTTTTTATGTAGCT+TGG | - | chr3_2:15067885-15067904 | None:intergenic | 25.0% |
| !!! | TTTTTGAAATCAATCTCTGA+GGG | - | chr3_2:15064272-15064291 | None:intergenic | 25.0% |
| !!! | TTTTTTGAAATCAATCTCTG+AGG | - | chr3_2:15064273-15064292 | None:intergenic | 25.0% |
| ! | GATTGGAAAAACATGAAAAA+TGG | - | chr3_2:15064527-15064546 | None:intergenic | 25.0% |
| ! | GTTTCAAATATTTGAGGATA+TGG | + | chr3_2:15064700-15064719 | Msa0396540:exon | 25.0% |
| !! | CAAGAAAAATCTGAAATCAA+TGG | + | chr3_2:15064734-15064753 | Msa0396540:CDS | 25.0% |
| ! | ATTCATTATATCACTTCGAT+GGG | - | chr3_2:15064809-15064828 | None:intergenic | 25.0% |
| ! | AGATAATTCAGTGTAATCAT+AGG | + | chr3_2:15065014-15065033 | Msa0396540:intron | 25.0% |
| ! | TGAGTTCCTTATAGATTAAT+AGG | + | chr3_2:15065645-15065664 | Msa0396540:intron | 25.0% |
| !! | TTTAATTTCTTTCCTTGAGA+AGG | - | chr3_2:15065845-15065864 | None:intergenic | 25.0% |
| ! | GAAATTAAACATGATCTATG+AGG | + | chr3_2:15065856-15065875 | Msa0396540:intron | 25.0% |
| ! | GCCAGTAATATTTAAGAAAA+TGG | + | chr3_2:15066092-15066111 | Msa0396540:intron | 25.0% |
| ! | TAGTAAAGCAGAAACAATAA+AGG | - | chr3_2:15066216-15066235 | None:intergenic | 25.0% |
| !!! | ATTTGTAAGTTGAGTTTTGA+AGG | + | chr3_2:15066312-15066331 | Msa0396540:intron | 25.0% |
| !!! | TTTGTAAGTTGAGTTTTGAA+GGG | + | chr3_2:15066313-15066332 | Msa0396540:intron | 25.0% |
| !! | TGACTTTGAGAATTTAAACT+TGG | - | chr3_2:15066245-15066264 | None:intergenic | 25.0% |
| ! | ATCAAATAACCAACATTATC+CGG | + | chr3_2:15066650-15066669 | Msa0396540:intron | 25.0% |
| !!! | TTGTTTGAAAAGCATTATCT+TGG | + | chr3_2:15066907-15066926 | Msa0396540:intron | 25.0% |
| !!! | TTTTTTCAGATAAGTGCTTA+TGG | + | chr3_2:15067255-15067274 | Msa0396540:intron | 25.0% |
| ! | ACATGATTTGACATGATTAT+AGG | + | chr3_2:15067758-15067777 | Msa0396540:intron | 25.0% |
| !!! | TTTGGTTTTTTTATGTAGCT+TGG | - | chr3_2:15067885-15067904 | None:intergenic | 25.0% |
| TATTTCCTCCACTTGAAATT+AGG | - | chr3_2:15064438-15064457 | None:intergenic | 30.0% | |
| ! | GATCTGTAAGATTTTTCTGT+TGG | + | chr3_2:15064466-15064485 | Msa0396540:intron | 30.0% |
| TCTCTGCATGAAGATAAAAA+GGG | - | chr3_2:15064625-15064644 | None:intergenic | 30.0% | |
| TTCTCTGCATGAAGATAAAA+AGG | - | chr3_2:15064626-15064645 | None:intergenic | 30.0% | |
| ! | TTTTATCTTCATGCAGAGAA+AGG | + | chr3_2:15064626-15064645 | Msa0396540:intron | 30.0% |
| TTTATCTTCATGCAGAGAAA+GGG | + | chr3_2:15064627-15064646 | Msa0396540:intron | 30.0% | |
| AGAAAGGGATGATAAATACA+TGG | + | chr3_2:15064642-15064661 | Msa0396540:five_prime_UTR | 30.0% | |
| ! | ATAGTGACATTCCTTGATTT+TGG | + | chr3_2:15064678-15064697 | Msa0396540:five_prime_UTR | 30.0% |
| ! | GAAGAAAGAATGATGGAAAA+GGG | - | chr3_2:15064783-15064802 | None:intergenic | 30.0% |
| TTCATTATATCACTTCGATG+GGG | - | chr3_2:15064808-15064827 | None:intergenic | 30.0% | |
| CATTCATTATATCACTTCGA+TGG | - | chr3_2:15064810-15064829 | None:intergenic | 30.0% | |
| CATCGAAGTGATATAATGAA+TGG | + | chr3_2:15064808-15064827 | Msa0396540:intron | 30.0% | |
| GAACAACAAGAATAAGTCAT+TGG | + | chr3_2:15064841-15064860 | Msa0396540:intron | 30.0% | |
| CATGTTTAACCAAAACAAAG+AGG | - | chr3_2:15065292-15065311 | None:intergenic | 30.0% | |
| GTTTATGATAAACCAATCCA+TGG | + | chr3_2:15065311-15065330 | Msa0396540:intron | 30.0% | |
| GTCAGTGTAATTATATGAGT+CGG | - | chr3_2:15065452-15065471 | None:intergenic | 30.0% | |
| AATTAGGGATGTTACTACAA+TGG | + | chr3_2:15065616-15065635 | Msa0396540:intron | 30.0% | |
| TTTCTCAAGACATCTTGTAT+TGG | + | chr3_2:15065921-15065940 | Msa0396540:intron | 30.0% | |
| CTTCAAATTAAAGGTTTGTC+AGG | - | chr3_2:15066156-15066175 | None:intergenic | 30.0% | |
| CTTTCTCTTATGTAGAAATG+GGG | - | chr3_2:15066373-15066392 | None:intergenic | 30.0% | |
| CCTTTCTCTTATGTAGAAAT+GGG | - | chr3_2:15066374-15066393 | None:intergenic | 30.0% | |
| TCCTTTCTCTTATGTAGAAA+TGG | - | chr3_2:15066375-15066394 | None:intergenic | 30.0% | |
| AGTGTAAGCTCAAAGATTAA+GGG | - | chr3_2:15066719-15066738 | None:intergenic | 30.0% | |
| TAGTGTAAGCTCAAAGATTA+AGG | - | chr3_2:15066720-15066739 | None:intergenic | 30.0% | |
| AAGGAACAATAAGATTTGTG+TGG | - | chr3_2:15066964-15066983 | None:intergenic | 30.0% | |
| TCTCAGTTATAACTTAGACA+AGG | - | chr3_2:15066983-15067002 | None:intergenic | 30.0% | |
| ! | AGTTGAAATTGATAGTCCTA+AGG | - | chr3_2:15067017-15067036 | None:intergenic | 30.0% |
| AAACTATACAAATCATGCTG+CGG | - | chr3_2:15067074-15067093 | None:intergenic | 30.0% | |
| ACTTATTTAAGCTGATCTAC+TGG | - | chr3_2:15067340-15067359 | None:intergenic | 30.0% | |
| ! | ATCACAAGAAGTTTAGAATG+AGG | + | chr3_2:15067458-15067477 | Msa0396540:intron | 30.0% |
| ATAGAAAGTTTCATGTCTCA+AGG | - | chr3_2:15067489-15067508 | None:intergenic | 30.0% | |
| TATTTCCTCCACTTGAAATT+AGG | - | chr3_2:15064438-15064457 | None:intergenic | 30.0% | |
| ! | GATCTGTAAGATTTTTCTGT+TGG | + | chr3_2:15064466-15064485 | Msa0396540:intron | 30.0% |
| TCTCTGCATGAAGATAAAAA+GGG | - | chr3_2:15064625-15064644 | None:intergenic | 30.0% | |
| TTCTCTGCATGAAGATAAAA+AGG | - | chr3_2:15064626-15064645 | None:intergenic | 30.0% | |
| ! | TTTTATCTTCATGCAGAGAA+AGG | + | chr3_2:15064626-15064645 | Msa0396540:intron | 30.0% |
| TTTATCTTCATGCAGAGAAA+GGG | + | chr3_2:15064627-15064646 | Msa0396540:intron | 30.0% | |
| AGAAAGGGATGATAAATACA+TGG | + | chr3_2:15064642-15064661 | Msa0396540:five_prime_UTR | 30.0% | |
| ! | ATAGTGACATTCCTTGATTT+TGG | + | chr3_2:15064678-15064697 | Msa0396540:five_prime_UTR | 30.0% |
| ! | GAAGAAAGAATGATGGAAAA+GGG | - | chr3_2:15064783-15064802 | None:intergenic | 30.0% |
| TTCATTATATCACTTCGATG+GGG | - | chr3_2:15064808-15064827 | None:intergenic | 30.0% | |
| CATTCATTATATCACTTCGA+TGG | - | chr3_2:15064810-15064829 | None:intergenic | 30.0% | |
| CATCGAAGTGATATAATGAA+TGG | + | chr3_2:15064808-15064827 | Msa0396540:intron | 30.0% | |
| GAACAACAAGAATAAGTCAT+TGG | + | chr3_2:15064841-15064860 | Msa0396540:intron | 30.0% | |
| CATGTTTAACCAAAACAAAG+AGG | - | chr3_2:15065292-15065311 | None:intergenic | 30.0% | |
| GTTTATGATAAACCAATCCA+TGG | + | chr3_2:15065311-15065330 | Msa0396540:intron | 30.0% | |
| GTCAGTGTAATTATATGAGT+CGG | - | chr3_2:15065452-15065471 | None:intergenic | 30.0% | |
| AATTAGGGATGTTACTACAA+TGG | + | chr3_2:15065616-15065635 | Msa0396540:intron | 30.0% | |
| TTTCTCAAGACATCTTGTAT+TGG | + | chr3_2:15065921-15065940 | Msa0396540:intron | 30.0% | |
| CTTCAAATTAAAGGTTTGTC+AGG | - | chr3_2:15066156-15066175 | None:intergenic | 30.0% | |
| CTTTCTCTTATGTAGAAATG+GGG | - | chr3_2:15066373-15066392 | None:intergenic | 30.0% | |
| CCTTTCTCTTATGTAGAAAT+GGG | - | chr3_2:15066374-15066393 | None:intergenic | 30.0% | |
| TCCTTTCTCTTATGTAGAAA+TGG | - | chr3_2:15066375-15066394 | None:intergenic | 30.0% | |
| AGTGTAAGCTCAAAGATTAA+GGG | - | chr3_2:15066719-15066738 | None:intergenic | 30.0% | |
| TAGTGTAAGCTCAAAGATTA+AGG | - | chr3_2:15066720-15066739 | None:intergenic | 30.0% | |
| AAGGAACAATAAGATTTGTG+TGG | - | chr3_2:15066964-15066983 | None:intergenic | 30.0% | |
| TCTCAGTTATAACTTAGACA+AGG | - | chr3_2:15066983-15067002 | None:intergenic | 30.0% | |
| ! | AGTTGAAATTGATAGTCCTA+AGG | - | chr3_2:15067017-15067036 | None:intergenic | 30.0% |
| AAACTATACAAATCATGCTG+CGG | - | chr3_2:15067074-15067093 | None:intergenic | 30.0% | |
| ACTTATTTAAGCTGATCTAC+TGG | - | chr3_2:15067340-15067359 | None:intergenic | 30.0% | |
| ! | ATCACAAGAAGTTTAGAATG+AGG | + | chr3_2:15067458-15067477 | Msa0396540:intron | 30.0% |
| ATAGAAAGTTTCATGTCTCA+AGG | - | chr3_2:15067489-15067508 | None:intergenic | 30.0% | |
| AGGAATGTCACTATAATCTG+AGG | - | chr3_2:15064672-15064691 | None:intergenic | 35.0% | |
| ! | TCTGAAATCAATGGTATGAC+AGG | + | chr3_2:15064743-15064762 | Msa0396540:CDS | 35.0% |
| ! | GGAAGAAAGAATGATGGAAA+AGG | - | chr3_2:15064784-15064803 | None:intergenic | 35.0% |
| ! | ACGTCTTCAATTTGAAGTGT+CGG | - | chr3_2:15064891-15064910 | None:intergenic | 35.0% |
| AATTGAAGACGTGTATGTGT+TGG | + | chr3_2:15064899-15064918 | Msa0396540:intron | 35.0% | |
| TGTGTAGTACCTATGAAGTA+GGG | + | chr3_2:15064922-15064941 | Msa0396540:intron | 35.0% | |
| TATGAAGCACAAACACTCTT+CGG | - | chr3_2:15065099-15065118 | None:intergenic | 35.0% | |
| GTTTAACCAAAACAAAGAGG+AGG | - | chr3_2:15065289-15065308 | None:intergenic | 35.0% | |
| TCATGACAAGCTATGAAACA+CGG | + | chr3_2:15065380-15065399 | Msa0396540:intron | 35.0% | |
| TTGCATTAGTCACTACCATA+TGG | - | chr3_2:15065740-15065759 | None:intergenic | 35.0% | |
| TTTCTTTCCTTGAGAAGGTT+GGG | - | chr3_2:15065840-15065859 | None:intergenic | 35.0% | |
| ATTTCTTTCCTTGAGAAGGT+TGG | - | chr3_2:15065841-15065860 | None:intergenic | 35.0% | |
| ! | CAAGAAACATCAGAAGCTTT+TGG | - | chr3_2:15066003-15066022 | None:intergenic | 35.0% |
| AGCTTCTGATGTTTCTTGTA+TGG | + | chr3_2:15066005-15066024 | Msa0396540:intron | 35.0% | |
| ! | GCACTGTCACTTCAAATTAA+AGG | - | chr3_2:15066165-15066184 | None:intergenic | 35.0% |
| CCCATTTCTACATAAGAGAA+AGG | + | chr3_2:15066371-15066390 | Msa0396540:intron | 35.0% | |
| TCACAAGTCAGAGTGTATAA+TGG | + | chr3_2:15066466-15066485 | Msa0396540:intron | 35.0% | |
| GTGTATAATGGTATTTCGAC+AGG | + | chr3_2:15066478-15066497 | Msa0396540:intron | 35.0% | |
| CAGTGCAAAAGAGATCATAA+AGG | - | chr3_2:15066551-15066570 | None:intergenic | 35.0% | |
| AACATAAACACTTGTGAGAC+CGG | - | chr3_2:15066672-15066691 | None:intergenic | 35.0% | |
| TCAAAGATTAAGGGTCTGTT+TGG | - | chr3_2:15066710-15066729 | None:intergenic | 35.0% | |
| ! | GTGAATACTTACACCCATTT+TGG | - | chr3_2:15066841-15066860 | None:intergenic | 35.0% |
| ACGTTTAATTAGCCCATGTT+TGG | + | chr3_2:15067145-15067164 | Msa0396540:intron | 35.0% | |
| GTTTATCTCTCCTACTTGTA+AGG | + | chr3_2:15067384-15067403 | Msa0396540:intron | 35.0% | |
| TTTATTTGCATCAAGTGCTC+TGG | + | chr3_2:15067619-15067638 | Msa0396540:CDS | 35.0% | |
| ACGAACGTACCTTAGATATA+TGG | - | chr3_2:15067666-15067685 | None:intergenic | 35.0% | |
| TGTCACTGAATCTAGATGAA+TGG | + | chr3_2:15067784-15067803 | Msa0396540:CDS | 35.0% | |
| ! | TCAATGGAAGAATTCGGTTT+TGG | - | chr3_2:15067903-15067922 | None:intergenic | 35.0% |
| AAAACCGAATTCTTCCATTG+AGG | + | chr3_2:15067902-15067921 | Msa0396540:CDS | 35.0% | |
| AGGAATGTCACTATAATCTG+AGG | - | chr3_2:15064672-15064691 | None:intergenic | 35.0% | |
| ! | TCTGAAATCAATGGTATGAC+AGG | + | chr3_2:15064743-15064762 | Msa0396540:CDS | 35.0% |
| ! | GGAAGAAAGAATGATGGAAA+AGG | - | chr3_2:15064784-15064803 | None:intergenic | 35.0% |
| ! | ACGTCTTCAATTTGAAGTGT+CGG | - | chr3_2:15064891-15064910 | None:intergenic | 35.0% |
| AATTGAAGACGTGTATGTGT+TGG | + | chr3_2:15064899-15064918 | Msa0396540:intron | 35.0% | |
| TGTGTAGTACCTATGAAGTA+GGG | + | chr3_2:15064922-15064941 | Msa0396540:intron | 35.0% | |
| TATGAAGCACAAACACTCTT+CGG | - | chr3_2:15065099-15065118 | None:intergenic | 35.0% | |
| GTTTAACCAAAACAAAGAGG+AGG | - | chr3_2:15065289-15065308 | None:intergenic | 35.0% | |
| TCATGACAAGCTATGAAACA+CGG | + | chr3_2:15065380-15065399 | Msa0396540:intron | 35.0% | |
| TTGCATTAGTCACTACCATA+TGG | - | chr3_2:15065740-15065759 | None:intergenic | 35.0% | |
| TTTCTTTCCTTGAGAAGGTT+GGG | - | chr3_2:15065840-15065859 | None:intergenic | 35.0% | |
| ATTTCTTTCCTTGAGAAGGT+TGG | - | chr3_2:15065841-15065860 | None:intergenic | 35.0% | |
| ! | CAAGAAACATCAGAAGCTTT+TGG | - | chr3_2:15066003-15066022 | None:intergenic | 35.0% |
| AGCTTCTGATGTTTCTTGTA+TGG | + | chr3_2:15066005-15066024 | Msa0396540:intron | 35.0% | |
| ! | GCACTGTCACTTCAAATTAA+AGG | - | chr3_2:15066165-15066184 | None:intergenic | 35.0% |
| CCCATTTCTACATAAGAGAA+AGG | + | chr3_2:15066371-15066390 | Msa0396540:intron | 35.0% | |
| TCACAAGTCAGAGTGTATAA+TGG | + | chr3_2:15066466-15066485 | Msa0396540:intron | 35.0% | |
| GTGTATAATGGTATTTCGAC+AGG | + | chr3_2:15066478-15066497 | Msa0396540:intron | 35.0% | |
| CAGTGCAAAAGAGATCATAA+AGG | - | chr3_2:15066551-15066570 | None:intergenic | 35.0% | |
| AACATAAACACTTGTGAGAC+CGG | - | chr3_2:15066672-15066691 | None:intergenic | 35.0% | |
| TCAAAGATTAAGGGTCTGTT+TGG | - | chr3_2:15066710-15066729 | None:intergenic | 35.0% | |
| ! | GTGAATACTTACACCCATTT+TGG | - | chr3_2:15066841-15066860 | None:intergenic | 35.0% |
| ACGTTTAATTAGCCCATGTT+TGG | + | chr3_2:15067145-15067164 | Msa0396540:intron | 35.0% | |
| GTTTATCTCTCCTACTTGTA+AGG | + | chr3_2:15067384-15067403 | Msa0396540:intron | 35.0% | |
| TTTATTTGCATCAAGTGCTC+TGG | + | chr3_2:15067619-15067638 | Msa0396540:CDS | 35.0% | |
| ACGAACGTACCTTAGATATA+TGG | - | chr3_2:15067666-15067685 | None:intergenic | 35.0% | |
| TGTCACTGAATCTAGATGAA+TGG | + | chr3_2:15067784-15067803 | Msa0396540:CDS | 35.0% | |
| ! | TCAATGGAAGAATTCGGTTT+TGG | - | chr3_2:15067903-15067922 | None:intergenic | 35.0% |
| AAAACCGAATTCTTCCATTG+AGG | + | chr3_2:15067902-15067921 | Msa0396540:CDS | 35.0% | |
| TGTAGAGAATAAGCTGCCAT+TGG | + | chr3_2:15064406-15064425 | Msa0396540:intron | 40.0% | |
| TGAAATTAGGCATGAGCCAA+TGG | - | chr3_2:15064425-15064444 | None:intergenic | 40.0% | |
| ! | TCATGCCTAATTTCAAGTGG+AGG | + | chr3_2:15064430-15064449 | Msa0396540:five_prime_UTR | 40.0% |
| ATTATATCACTTCGATGGGG+AGG | - | chr3_2:15064805-15064824 | None:intergenic | 40.0% | |
| !! | TGAAGTGTCGGTGTTACATA+CGG | - | chr3_2:15064879-15064898 | None:intergenic | 40.0% |
| GTGTGTAGTACCTATGAAGT+AGG | + | chr3_2:15064921-15064940 | Msa0396540:intron | 40.0% | |
| ! | ACAAACACTCTTCGGATTAG+GGG | - | chr3_2:15065091-15065110 | None:intergenic | 40.0% |
| CACAAACACTCTTCGGATTA+GGG | - | chr3_2:15065092-15065111 | None:intergenic | 40.0% | |
| CTGAATATAACCACCTGTGT+TGG | - | chr3_2:15065147-15065166 | None:intergenic | 40.0% | |
| TAACCAAAACAAAGAGGAGG+AGG | - | chr3_2:15065286-15065305 | None:intergenic | 40.0% | |
| ATCTCTTCTCAACCATGGAT+TGG | - | chr3_2:15065326-15065345 | None:intergenic | 40.0% | |
| TATGAAACACGGATACTCCT+CGG | + | chr3_2:15065391-15065410 | Msa0396540:intron | 40.0% | |
| TCGTCTATGAACCATGGATA+CGG | - | chr3_2:15065573-15065592 | None:intergenic | 40.0% | |
| TACTTGTCGTCTATGAACCA+TGG | - | chr3_2:15065579-15065598 | None:intergenic | 40.0% | |
| AGTGACAGTGCTACATACAA+AGG | + | chr3_2:15066174-15066193 | Msa0396540:intron | 40.0% | |
| GTGACAGTGCTACATACAAA+GGG | + | chr3_2:15066175-15066194 | Msa0396540:intron | 40.0% | |
| !! | GAAAAGCTTGACTTGCAAGA+AGG | + | chr3_2:15066343-15066362 | Msa0396540:intron | 40.0% |
| AATGTCTCAATTGTAGGGTC+AGG | + | chr3_2:15066516-15066535 | Msa0396540:intron | 40.0% | |
| AGATTGTCTAACCTTTCCTG+TGG | - | chr3_2:15066769-15066788 | None:intergenic | 40.0% | |
| !! | AACAAGTTCTGTGCTGATTG+TGG | + | chr3_2:15066805-15066824 | Msa0396540:CDS | 40.0% |
| TGGATCATCAGAGCCAAAAT+GGG | + | chr3_2:15066825-15066844 | Msa0396540:CDS | 40.0% | |
| TGAGAAGCTAAAGATGCCTT+AGG | + | chr3_2:15066998-15067017 | Msa0396540:intron | 40.0% | |
| GGAGAGATAAACCACACTAA+GGG | - | chr3_2:15067376-15067395 | None:intergenic | 40.0% | |
| AGGAGAGATAAACCACACTA+AGG | - | chr3_2:15067377-15067396 | None:intergenic | 40.0% | |
| !! | ACTAAGAGCACCTTACAAGT+AGG | - | chr3_2:15067397-15067416 | None:intergenic | 40.0% |
| GCTCTTAGTAACATTGTCCT+CGG | + | chr3_2:15067408-15067427 | Msa0396540:intron | 40.0% | |
| AACATCAGGTCTTCAAGTCT+TGG | + | chr3_2:15067592-15067611 | Msa0396540:intron | 40.0% | |
| TCTGGTATACATAGAAGCCT+AGG | + | chr3_2:15067637-15067656 | Msa0396540:CDS | 40.0% | |
| CCTTAGATATATGGACTCCT+AGG | - | chr3_2:15067657-15067676 | None:intergenic | 40.0% | |
| CCTAGGAGTCCATATATCTA+AGG | + | chr3_2:15067654-15067673 | Msa0396540:CDS | 40.0% | |
| ! | AGACGAACAAGTCGATTCAT+TGG | + | chr3_2:15067809-15067828 | Msa0396540:CDS | 40.0% |
| ! | AGTCGATTCATTGGTCAACT+TGG | + | chr3_2:15067818-15067837 | Msa0396540:CDS | 40.0% |
| ! | GTCGATTCATTGGTCAACTT+GGG | + | chr3_2:15067819-15067838 | Msa0396540:CDS | 40.0% |
| !!! | AGGAGCGCTCTGATTTTATT+AGG | + | chr3_2:15067922-15067941 | Msa0396540:CDS | 40.0% |
| TGTAGAGAATAAGCTGCCAT+TGG | + | chr3_2:15064406-15064425 | Msa0396540:intron | 40.0% | |
| TGAAATTAGGCATGAGCCAA+TGG | - | chr3_2:15064425-15064444 | None:intergenic | 40.0% | |
| ! | TCATGCCTAATTTCAAGTGG+AGG | + | chr3_2:15064430-15064449 | Msa0396540:five_prime_UTR | 40.0% |
| ATTATATCACTTCGATGGGG+AGG | - | chr3_2:15064805-15064824 | None:intergenic | 40.0% | |
| !! | TGAAGTGTCGGTGTTACATA+CGG | - | chr3_2:15064879-15064898 | None:intergenic | 40.0% |
| GTGTGTAGTACCTATGAAGT+AGG | + | chr3_2:15064921-15064940 | Msa0396540:intron | 40.0% | |
| ! | ACAAACACTCTTCGGATTAG+GGG | - | chr3_2:15065091-15065110 | None:intergenic | 40.0% |
| CACAAACACTCTTCGGATTA+GGG | - | chr3_2:15065092-15065111 | None:intergenic | 40.0% | |
| CTGAATATAACCACCTGTGT+TGG | - | chr3_2:15065147-15065166 | None:intergenic | 40.0% | |
| TAACCAAAACAAAGAGGAGG+AGG | - | chr3_2:15065286-15065305 | None:intergenic | 40.0% | |
| ATCTCTTCTCAACCATGGAT+TGG | - | chr3_2:15065326-15065345 | None:intergenic | 40.0% | |
| TATGAAACACGGATACTCCT+CGG | + | chr3_2:15065391-15065410 | Msa0396540:intron | 40.0% | |
| TCGTCTATGAACCATGGATA+CGG | - | chr3_2:15065573-15065592 | None:intergenic | 40.0% | |
| TACTTGTCGTCTATGAACCA+TGG | - | chr3_2:15065579-15065598 | None:intergenic | 40.0% | |
| AGTGACAGTGCTACATACAA+AGG | + | chr3_2:15066174-15066193 | Msa0396540:intron | 40.0% | |
| GTGACAGTGCTACATACAAA+GGG | + | chr3_2:15066175-15066194 | Msa0396540:intron | 40.0% | |
| !! | GAAAAGCTTGACTTGCAAGA+AGG | + | chr3_2:15066343-15066362 | Msa0396540:intron | 40.0% |
| AATGTCTCAATTGTAGGGTC+AGG | + | chr3_2:15066516-15066535 | Msa0396540:intron | 40.0% | |
| AGATTGTCTAACCTTTCCTG+TGG | - | chr3_2:15066769-15066788 | None:intergenic | 40.0% | |
| !! | AACAAGTTCTGTGCTGATTG+TGG | + | chr3_2:15066805-15066824 | Msa0396540:CDS | 40.0% |
| TGGATCATCAGAGCCAAAAT+GGG | + | chr3_2:15066825-15066844 | Msa0396540:CDS | 40.0% | |
| TGAGAAGCTAAAGATGCCTT+AGG | + | chr3_2:15066998-15067017 | Msa0396540:intron | 40.0% | |
| GGAGAGATAAACCACACTAA+GGG | - | chr3_2:15067376-15067395 | None:intergenic | 40.0% | |
| AGGAGAGATAAACCACACTA+AGG | - | chr3_2:15067377-15067396 | None:intergenic | 40.0% | |
| !! | ACTAAGAGCACCTTACAAGT+AGG | - | chr3_2:15067397-15067416 | None:intergenic | 40.0% |
| GCTCTTAGTAACATTGTCCT+CGG | + | chr3_2:15067408-15067427 | Msa0396540:intron | 40.0% | |
| AACATCAGGTCTTCAAGTCT+TGG | + | chr3_2:15067592-15067611 | Msa0396540:intron | 40.0% | |
| TCTGGTATACATAGAAGCCT+AGG | + | chr3_2:15067637-15067656 | Msa0396540:CDS | 40.0% | |
| CCTTAGATATATGGACTCCT+AGG | - | chr3_2:15067657-15067676 | None:intergenic | 40.0% | |
| CCTAGGAGTCCATATATCTA+AGG | + | chr3_2:15067654-15067673 | Msa0396540:CDS | 40.0% | |
| ! | AGACGAACAAGTCGATTCAT+TGG | + | chr3_2:15067809-15067828 | Msa0396540:CDS | 40.0% |
| ! | AGTCGATTCATTGGTCAACT+TGG | + | chr3_2:15067818-15067837 | Msa0396540:CDS | 40.0% |
| ! | GTCGATTCATTGGTCAACTT+GGG | + | chr3_2:15067819-15067838 | Msa0396540:CDS | 40.0% |
| !!! | AGGAGCGCTCTGATTTTATT+AGG | + | chr3_2:15067922-15067941 | Msa0396540:CDS | 40.0% |
| GGCTCATGCCTAATTTCAAG+TGG | + | chr3_2:15064427-15064446 | Msa0396540:five_prime_UTR | 45.0% | |
| TGGGGAGGAAGAAAGAATGA+TGG | - | chr3_2:15064790-15064809 | None:intergenic | 45.0% | |
| TGTCTGTGTCCCTACTTCAT+AGG | - | chr3_2:15064934-15064953 | None:intergenic | 45.0% | |
| ATGAAGTAGGGACACAGACA+CGG | + | chr3_2:15064934-15064953 | Msa0396540:intron | 45.0% | |
| ! | TATTATCCGTGTCGGCATGT+CGG | - | chr3_2:15064981-15065000 | None:intergenic | 45.0% |
| ! | CATAGGTGTTGTGTCACTGT+CGG | + | chr3_2:15065031-15065050 | Msa0396540:intron | 45.0% |
| GCACAAACACTCTTCGGATT+AGG | - | chr3_2:15065093-15065112 | None:intergenic | 45.0% | |
| GATACATGAGACACCAACAC+AGG | + | chr3_2:15065131-15065150 | Msa0396540:intron | 45.0% | |
| AAAACAAAGAGGAGGAGGAG+GGG | - | chr3_2:15065281-15065300 | None:intergenic | 45.0% | |
| CAAAACAAAGAGGAGGAGGA+GGG | - | chr3_2:15065282-15065301 | None:intergenic | 45.0% | |
| GCAACATCTCTTCTCAACCA+TGG | - | chr3_2:15065331-15065350 | None:intergenic | 45.0% | |
| TACGACACGAACACTGACAT+GGG | - | chr3_2:15065536-15065555 | None:intergenic | 45.0% | |
| ATACGACACGAACACTGACA+TGG | - | chr3_2:15065537-15065556 | None:intergenic | 45.0% | |
| ATGAACCATGGATACGGACA+TGG | - | chr3_2:15065567-15065586 | None:intergenic | 45.0% | |
| AACAATAGCCCTGCACCATA+TGG | + | chr3_2:15065722-15065741 | Msa0396540:intron | 45.0% | |
| AGTCACTACCATATGGTGCA+GGG | - | chr3_2:15065733-15065752 | None:intergenic | 45.0% | |
| TAGTCACTACCATATGGTGC+AGG | - | chr3_2:15065734-15065753 | None:intergenic | 45.0% | |
| ATCACTTCCCAACCTTCTCA+AGG | + | chr3_2:15065830-15065849 | Msa0396540:intron | 45.0% | |
| !! | TGAAGCACTGATACAGACAC+TGG | + | chr3_2:15066048-15066067 | Msa0396540:intron | 45.0% |
| ACAGTGCTACATACAAAGGG+AGG | + | chr3_2:15066178-15066197 | Msa0396540:intron | 45.0% | |
| CTCAAAGTCAAAGAGAGCGA+TGG | + | chr3_2:15066589-15066608 | Msa0396540:CDS | 45.0% | |
| AGAGAGCGATGGATGTTATC+TGG | + | chr3_2:15066600-15066619 | Msa0396540:CDS | 45.0% | |
| CTTGTGAGACCGGATAATGT+TGG | - | chr3_2:15066662-15066681 | None:intergenic | 45.0% | |
| TCTGCTTACTTCCGATCACT+AGG | + | chr3_2:15066742-15066761 | Msa0396540:intron | 45.0% | |
| TTTCCTGTGGACCTAGTGAT+CGG | - | chr3_2:15066756-15066775 | None:intergenic | 45.0% | |
| ACAATCTGATGCGTCAAGCA+GGG | + | chr3_2:15066782-15066801 | Msa0396540:CDS | 45.0% | |
| GTGGATCATCAGAGCCAAAA+TGG | + | chr3_2:15066824-15066843 | Msa0396540:CDS | 45.0% | |
| TACTGGCATTAGCACTTGTG+AGG | - | chr3_2:15067323-15067342 | None:intergenic | 45.0% | |
| ATCCAAACAGTCCCTTAGTG+TGG | + | chr3_2:15067362-15067381 | Msa0396540:intron | 45.0% | |
| AACCACACTAAGGGACTGTT+TGG | - | chr3_2:15067367-15067386 | None:intergenic | 45.0% | |
| CAGCGCATTGTTTGAACATC+AGG | + | chr3_2:15067578-15067597 | Msa0396540:intron | 45.0% | |
| GATTCATTGGTCAACTTGGG+TGG | + | chr3_2:15067822-15067841 | Msa0396540:CDS | 45.0% | |
| CGCTCCTCAATGGAAGAATT+CGG | - | chr3_2:15067909-15067928 | None:intergenic | 45.0% | |
| ! | AAAATCAGAGCGCTCCTCAA+TGG | - | chr3_2:15067919-15067938 | None:intergenic | 45.0% |
| GGCTCATGCCTAATTTCAAG+TGG | + | chr3_2:15064427-15064446 | Msa0396540:five_prime_UTR | 45.0% | |
| TGGGGAGGAAGAAAGAATGA+TGG | - | chr3_2:15064790-15064809 | None:intergenic | 45.0% | |
| TGTCTGTGTCCCTACTTCAT+AGG | - | chr3_2:15064934-15064953 | None:intergenic | 45.0% | |
| ATGAAGTAGGGACACAGACA+CGG | + | chr3_2:15064934-15064953 | Msa0396540:intron | 45.0% | |
| ! | TATTATCCGTGTCGGCATGT+CGG | - | chr3_2:15064981-15065000 | None:intergenic | 45.0% |
| ! | CATAGGTGTTGTGTCACTGT+CGG | + | chr3_2:15065031-15065050 | Msa0396540:intron | 45.0% |
| GCACAAACACTCTTCGGATT+AGG | - | chr3_2:15065093-15065112 | None:intergenic | 45.0% | |
| GATACATGAGACACCAACAC+AGG | + | chr3_2:15065131-15065150 | Msa0396540:intron | 45.0% | |
| AAAACAAAGAGGAGGAGGAG+GGG | - | chr3_2:15065281-15065300 | None:intergenic | 45.0% | |
| CAAAACAAAGAGGAGGAGGA+GGG | - | chr3_2:15065282-15065301 | None:intergenic | 45.0% | |
| GCAACATCTCTTCTCAACCA+TGG | - | chr3_2:15065331-15065350 | None:intergenic | 45.0% | |
| TACGACACGAACACTGACAT+GGG | - | chr3_2:15065536-15065555 | None:intergenic | 45.0% | |
| ATACGACACGAACACTGACA+TGG | - | chr3_2:15065537-15065556 | None:intergenic | 45.0% | |
| ATGAACCATGGATACGGACA+TGG | - | chr3_2:15065567-15065586 | None:intergenic | 45.0% | |
| AACAATAGCCCTGCACCATA+TGG | + | chr3_2:15065722-15065741 | Msa0396540:intron | 45.0% | |
| AGTCACTACCATATGGTGCA+GGG | - | chr3_2:15065733-15065752 | None:intergenic | 45.0% | |
| TAGTCACTACCATATGGTGC+AGG | - | chr3_2:15065734-15065753 | None:intergenic | 45.0% | |
| ATCACTTCCCAACCTTCTCA+AGG | + | chr3_2:15065830-15065849 | Msa0396540:intron | 45.0% | |
| !! | TGAAGCACTGATACAGACAC+TGG | + | chr3_2:15066048-15066067 | Msa0396540:intron | 45.0% |
| ACAGTGCTACATACAAAGGG+AGG | + | chr3_2:15066178-15066197 | Msa0396540:intron | 45.0% | |
| CTCAAAGTCAAAGAGAGCGA+TGG | + | chr3_2:15066589-15066608 | Msa0396540:CDS | 45.0% | |
| AGAGAGCGATGGATGTTATC+TGG | + | chr3_2:15066600-15066619 | Msa0396540:CDS | 45.0% | |
| CTTGTGAGACCGGATAATGT+TGG | - | chr3_2:15066662-15066681 | None:intergenic | 45.0% | |
| TCTGCTTACTTCCGATCACT+AGG | + | chr3_2:15066742-15066761 | Msa0396540:intron | 45.0% | |
| TTTCCTGTGGACCTAGTGAT+CGG | - | chr3_2:15066756-15066775 | None:intergenic | 45.0% | |
| ACAATCTGATGCGTCAAGCA+GGG | + | chr3_2:15066782-15066801 | Msa0396540:CDS | 45.0% | |
| GTGGATCATCAGAGCCAAAA+TGG | + | chr3_2:15066824-15066843 | Msa0396540:CDS | 45.0% | |
| TACTGGCATTAGCACTTGTG+AGG | - | chr3_2:15067323-15067342 | None:intergenic | 45.0% | |
| ATCCAAACAGTCCCTTAGTG+TGG | + | chr3_2:15067362-15067381 | Msa0396540:intron | 45.0% | |
| AACCACACTAAGGGACTGTT+TGG | - | chr3_2:15067367-15067386 | None:intergenic | 45.0% | |
| CAGCGCATTGTTTGAACATC+AGG | + | chr3_2:15067578-15067597 | Msa0396540:intron | 45.0% | |
| GATTCATTGGTCAACTTGGG+TGG | + | chr3_2:15067822-15067841 | Msa0396540:CDS | 45.0% | |
| CGCTCCTCAATGGAAGAATT+CGG | - | chr3_2:15067909-15067928 | None:intergenic | 45.0% | |
| ! | AAAATCAGAGCGCTCCTCAA+TGG | - | chr3_2:15067919-15067938 | None:intergenic | 45.0% |
| !!! | CTATTTTTTTAAATTATTAT+CGG | + | chr3_2:15065173-15065192 | Msa0396540:intron | 5.0% |
| !!! | CTATTTTTTTAAATTATTAT+CGG | + | chr3_2:15065173-15065192 | Msa0396540:intron | 5.0% |
| !! | TCTTCGGATTAGGGGTGTTC+CGG | - | chr3_2:15065083-15065102 | None:intergenic | 50.0% |
| ACATGAGACACCAACACAGG+TGG | + | chr3_2:15065134-15065153 | Msa0396540:intron | 50.0% | |
| CCAAAACAAAGAGGAGGAGG+AGG | - | chr3_2:15065283-15065302 | None:intergenic | 50.0% | |
| !! | CCTCCTCCTCCTCTTTGTTT+TGG | + | chr3_2:15065280-15065299 | Msa0396540:intron | 50.0% |
| ACACGGATACTCCTCGGATT+AGG | + | chr3_2:15065397-15065416 | Msa0396540:intron | 50.0% | |
| ACTGAGACACTCCTAATCCG+AGG | - | chr3_2:15065411-15065430 | None:intergenic | 50.0% | |
| GTCAGTGTTCGTGTCGTATC+CGG | + | chr3_2:15065538-15065557 | Msa0396540:intron | 50.0% | |
| ATGGATACGGACATGGACAC+CGG | - | chr3_2:15065560-15065579 | None:intergenic | 50.0% | |
| GATCACTAGGTCCACAGGAA+AGG | + | chr3_2:15066755-15066774 | Msa0396540:intron | 50.0% | |
| GACAATCTGATGCGTCAAGC+AGG | + | chr3_2:15066781-15066800 | Msa0396540:CDS | 50.0% | |
| !! | TCTTCGGATTAGGGGTGTTC+CGG | - | chr3_2:15065083-15065102 | None:intergenic | 50.0% |
| ACATGAGACACCAACACAGG+TGG | + | chr3_2:15065134-15065153 | Msa0396540:intron | 50.0% | |
| CCAAAACAAAGAGGAGGAGG+AGG | - | chr3_2:15065283-15065302 | None:intergenic | 50.0% | |
| !! | CCTCCTCCTCCTCTTTGTTT+TGG | + | chr3_2:15065280-15065299 | Msa0396540:intron | 50.0% |
| ACACGGATACTCCTCGGATT+AGG | + | chr3_2:15065397-15065416 | Msa0396540:intron | 50.0% | |
| ACTGAGACACTCCTAATCCG+AGG | - | chr3_2:15065411-15065430 | None:intergenic | 50.0% | |
| GTCAGTGTTCGTGTCGTATC+CGG | + | chr3_2:15065538-15065557 | Msa0396540:intron | 50.0% | |
| ATGGATACGGACATGGACAC+CGG | - | chr3_2:15065560-15065579 | None:intergenic | 50.0% | |
| GATCACTAGGTCCACAGGAA+AGG | + | chr3_2:15066755-15066774 | Msa0396540:intron | 50.0% | |
| GACAATCTGATGCGTCAAGC+AGG | + | chr3_2:15066781-15066800 | Msa0396540:CDS | 50.0% | |
| GGTGTCCATGTCCGTATCCA+TGG | + | chr3_2:15065559-15065578 | Msa0396540:intron | 55.0% | |
| CTTCCGATCACTAGGTCCAC+AGG | + | chr3_2:15066750-15066769 | Msa0396540:intron | 55.0% | |
| GGTGTCCATGTCCGTATCCA+TGG | + | chr3_2:15065559-15065578 | Msa0396540:intron | 55.0% | |
| CTTCCGATCACTAGGTCCAC+AGG | + | chr3_2:15066750-15066769 | Msa0396540:intron | 55.0% | |
| AGGGACACAGACACGGACAC+CGG | + | chr3_2:15064941-15064960 | Msa0396540:intron | 60.0% | |
| ! | TTCCGGTGTCAGACACGCGT+CGG | - | chr3_2:15065066-15065085 | None:intergenic | 60.0% |
| GAGTCGGACACGACACGTGT+TGG | - | chr3_2:15065436-15065455 | None:intergenic | 60.0% | |
| AGGGACACAGACACGGACAC+CGG | + | chr3_2:15064941-15064960 | Msa0396540:intron | 60.0% | |
| ! | TTCCGGTGTCAGACACGCGT+CGG | - | chr3_2:15065066-15065085 | None:intergenic | 60.0% |
| GAGTCGGACACGACACGTGT+TGG | - | chr3_2:15065436-15065455 | None:intergenic | 60.0% | |
| CGGACACCGACATGCCGACA+CGG | + | chr3_2:15064972-15064991 | Msa0396540:intron | 65.0% | |
| CACCGACGCGTGTCTGACAC+CGG | + | chr3_2:15065061-15065080 | Msa0396540:intron | 65.0% | |
| CGGACACCGACATGCCGACA+CGG | + | chr3_2:15064972-15064991 | Msa0396540:intron | 65.0% | |
| CACCGACGCGTGTCTGACAC+CGG | + | chr3_2:15065061-15065080 | Msa0396540:intron | 65.0% | |
| CACGGACACCGGACACGACG+CGG | + | chr3_2:15064952-15064971 | Msa0396540:intron | 70.0% | |
| ! | GTCGGTGTCCGCGTCGTGTC+CGG | - | chr3_2:15064963-15064982 | None:intergenic | 70.0% |
| CACGGACACCGGACACGACG+CGG | + | chr3_2:15064952-15064971 | Msa0396540:intron | 70.0% | |
| ! | GTCGGTGTCCGCGTCGTGTC+CGG | - | chr3_2:15064963-15064982 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 15064205 | 15067947 | 15064205 | ID=Msa0396540;Name=Msa0396540 |
| chr3_2 | mRNA | 15064205 | 15067947 | 15064205 | ID=Msa0396540-mRNA-1;Parent=Msa0396540;Name=Msa0396540-mRNA-1;_AED=0.18;_eAED=0.18;_QI=246|1|0.85|1|0.66|0.57|7|0|154 |
| chr3_2 | exon | 15064205 | 15064313 | 15064205 | ID=Msa0396540-mRNA-1:exon:3344;Parent=Msa0396540-mRNA-1 |
| chr3_2 | exon | 15064411 | 15064470 | 15064411 | ID=Msa0396540-mRNA-1:exon:3345;Parent=Msa0396540-mRNA-1 |
| chr3_2 | exon | 15064642 | 15064764 | 15064642 | ID=Msa0396540-mRNA-1:exon:3346;Parent=Msa0396540-mRNA-1 |
| chr3_2 | exon | 15066532 | 15066621 | 15066532 | ID=Msa0396540-mRNA-1:exon:3347;Parent=Msa0396540-mRNA-1 |
| chr3_2 | exon | 15066764 | 15066848 | 15066764 | ID=Msa0396540-mRNA-1:exon:3348;Parent=Msa0396540-mRNA-1 |
| chr3_2 | exon | 15067600 | 15067675 | 15067600 | ID=Msa0396540-mRNA-1:exon:3349;Parent=Msa0396540-mRNA-1 |
| chr3_2 | exon | 15067780 | 15067947 | 15067780 | ID=Msa0396540-mRNA-1:exon:3350;Parent=Msa0396540-mRNA-1 |
| chr3_2 | five_prime_UTR | 15064205 | 15064313 | 15064205 | ID=Msa0396540-mRNA-1:five_prime_utr;Parent=Msa0396540-mRNA-1 |
| chr3_2 | five_prime_UTR | 15064411 | 15064470 | 15064411 | ID=Msa0396540-mRNA-1:five_prime_utr;Parent=Msa0396540-mRNA-1 |
| chr3_2 | five_prime_UTR | 15064642 | 15064718 | 15064642 | ID=Msa0396540-mRNA-1:five_prime_utr;Parent=Msa0396540-mRNA-1 |
| chr3_2 | CDS | 15064719 | 15064764 | 15064719 | ID=Msa0396540-mRNA-1:cds;Parent=Msa0396540-mRNA-1 |
| chr3_2 | CDS | 15066532 | 15066621 | 15066532 | ID=Msa0396540-mRNA-1:cds;Parent=Msa0396540-mRNA-1 |
| chr3_2 | CDS | 15066764 | 15066848 | 15066764 | ID=Msa0396540-mRNA-1:cds;Parent=Msa0396540-mRNA-1 |
| chr3_2 | CDS | 15067600 | 15067675 | 15067600 | ID=Msa0396540-mRNA-1:cds;Parent=Msa0396540-mRNA-1 |
| chr3_2 | CDS | 15067780 | 15067947 | 15067780 | ID=Msa0396540-mRNA-1:cds;Parent=Msa0396540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
