Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491540 | XP_003598626.1 | 97.000 | 400 | 9 | 1 | 1 | 397 | 1 | 400 | 0.0 | 794 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491540 | sp|Q8L7A4|AGD11_ARATH | 67.448 | 384 | 110 | 4 | 17 | 397 | 14 | 385 | 0.0 | 527 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491540 | G7IYV8 | 97.000 | 400 | 9 | 1 | 1 | 397 | 1 | 400 | 0.0 | 794 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010490 | Msa0491540 | 0.804684 | 1.919536e-49 | -8.615850e-47 |
| Msa0015140 | Msa0491540 | 0.815003 | 1.155177e-51 | -8.615850e-47 |
| Msa0037540 | Msa0491540 | -0.804279 | 2.331101e-49 | -8.615850e-47 |
| Msa0037590 | Msa0491540 | -0.804434 | 2.164103e-49 | -8.615850e-47 |
| Msa0082680 | Msa0491540 | -0.803779 | 2.961846e-49 | -8.615850e-47 |
| Msa0109590 | Msa0491540 | 0.800900 | 1.159870e-48 | -8.615850e-47 |
| Msa0126360 | Msa0491540 | 0.810848 | 9.398082e-51 | -8.615850e-47 |
| Msa0127780 | Msa0491540 | 0.804088 | 2.554558e-49 | -8.615850e-47 |
| Msa0177210 | Msa0491540 | 0.812809 | 3.516545e-51 | -8.615850e-47 |
| Msa0185510 | Msa0491540 | 0.812787 | 3.556980e-51 | -8.615850e-47 |
| Msa0223120 | Msa0491540 | 0.800330 | 1.515890e-48 | -8.615850e-47 |
| Msa0236070 | Msa0491540 | 0.813737 | 2.199467e-51 | -8.615850e-47 |
| Msa0385490 | Msa0491540 | 0.806893 | 6.592371e-50 | -8.615850e-47 |
| Msa0396540 | Msa0491540 | 0.808962 | 2.393350e-50 | -8.615850e-47 |
| Msa0419520 | Msa0491540 | 0.815147 | 1.072722e-51 | -8.615850e-47 |
| Msa0437400 | Msa0491540 | 0.812381 | 4.363047e-51 | -8.615850e-47 |
| Msa0439890 | Msa0491540 | 0.800143 | 1.654595e-48 | -8.615850e-47 |
| Msa0444080 | Msa0491540 | 0.849107 | 3.998162e-60 | -8.615850e-47 |
| Msa0239490 | Msa0491540 | 0.810360 | 1.198284e-50 | -8.615850e-47 |
| Msa0335320 | Msa0491540 | -0.808554 | 2.925903e-50 | -8.615850e-47 |
| Msa0347750 | Msa0491540 | 0.813275 | 2.779093e-51 | -8.615850e-47 |
| Msa0349700 | Msa0491540 | 0.873606 | 1.290618e-67 | -8.615850e-47 |
| Msa0491540 | Msa0527910 | 0.806990 | 6.288192e-50 | -8.615850e-47 |
| Msa0491540 | Msa0546570 | 0.813578 | 2.384785e-51 | -8.615850e-47 |
| Msa0491540 | Msa0597000 | 0.809963 | 1.459168e-50 | -8.615850e-47 |
| Msa0491540 | Msa0602370 | 0.818219 | 2.197569e-52 | -8.615850e-47 |
| Msa0491540 | Msa0603670 | 0.813689 | 2.254543e-51 | -8.615850e-47 |
| Msa0491540 | Msa0620620 | 0.801088 | 1.061750e-48 | -8.615850e-47 |
| Msa0491540 | Msa0682090 | 0.805796 | 1.122803e-49 | -8.615850e-47 |
| Msa0491540 | Msa0682140 | 0.808353 | 3.228503e-50 | -8.615850e-47 |
| Msa0491540 | Msa0703910 | 0.803563 | 3.283744e-49 | -8.615850e-47 |
| Msa0491540 | Msa0721340 | 0.802538 | 5.349471e-49 | -8.615850e-47 |
| Msa0491540 | Msa0742150 | 0.834735 | 2.524031e-56 | -8.615850e-47 |
| Msa0491540 | Msa0751850 | 0.804781 | 1.832295e-49 | -8.615850e-47 |
| Msa0491540 | Msa0826760 | 0.803418 | 3.520147e-49 | -8.615850e-47 |
| Msa0491540 | Msa0844110 | 0.800024 | 1.749938e-48 | -8.615850e-47 |
| Msa0491540 | Msa0861570 | 0.809559 | 1.782307e-50 | -8.615850e-47 |
| Msa0491540 | Msa0877710 | 0.806418 | 8.304658e-50 | -8.615850e-47 |
| Msa0491540 | Msa0980020 | 0.809533 | 1.805777e-50 | -8.615850e-47 |
| Msa0491540 | Msa1028590 | 0.800777 | 1.229251e-48 | -8.615850e-47 |
| Msa0491540 | Msa1034270 | 0.829243 | 5.740957e-55 | -8.615850e-47 |
| Msa0491540 | Msa1034290 | 0.836717 | 7.945215e-57 | -8.615850e-47 |
| Msa0491540 | Msa1064250 | 0.820155 | 7.964027e-53 | -8.615850e-47 |
| Msa0491540 | Msa1071320 | 0.805889 | 1.073280e-49 | -8.615850e-47 |
| Msa0491540 | Msa1080640 | 0.813544 | 2.426227e-51 | -8.615850e-47 |
| Msa0491540 | Msa1163540 | 0.824505 | 7.782461e-54 | -8.615850e-47 |
| Msa0491540 | Msa1164020 | 0.804729 | 1.878371e-49 | -8.615850e-47 |
| Msa0491540 | Msa1206360 | 0.810196 | 1.299998e-50 | -8.615850e-47 |
| Msa0491540 | Msa1210110 | 0.800839 | 1.193940e-48 | -8.615850e-47 |
| Msa0491540 | Msa1226610 | 0.805065 | 1.597958e-49 | -8.615850e-47 |
| Msa0491540 | Msa1270660 | 0.823262 | 1.522587e-53 | -8.615850e-47 |
| Msa0491540 | Msa1294080 | 0.806634 | 7.478146e-50 | -8.615850e-47 |
| Msa0491540 | Msa1307180 | 0.817443 | 3.289562e-52 | -8.615850e-47 |
| Msa0491540 | Msa1316360 | 0.805836 | 1.101116e-49 | -8.615850e-47 |
| Msa0491540 | Msa1332050 | 0.803801 | 2.930433e-49 | -8.615850e-47 |
| Msa0491540 | Msa1371090 | 0.806484 | 8.044639e-50 | -8.615850e-47 |
| Msa0491540 | Msa1371940 | 0.800041 | 1.735554e-48 | -8.615850e-47 |
| Msa0491540 | Msa1381480 | 0.813156 | 2.952394e-51 | -8.615850e-47 |
| Msa0491540 | Msa1407190 | 0.807162 | 5.783726e-50 | -8.615850e-47 |
| Msa0491540 | Msa1416370 | 0.805542 | 1.269483e-49 | -8.615850e-47 |
| Msa0491540 | Msa1418920 | 0.803951 | 2.727901e-49 | -8.615850e-47 |
| Msa0491540 | Msa1432130 | 0.801547 | 8.553397e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491540 | MtrunA17_Chr3g0083541 | 97.000 | 400 | 9 | 1 | 1 | 397 | 1 | 400 | 0.0 | 794 |
| Msa0491540 | MtrunA17_Chr2g0292461 | 46.000 | 350 | 151 | 4 | 48 | 397 | 18 | 329 | 1.91e-107 | 319 |
| Msa0491540 | MtrunA17_Chr8g0352751 | 83.951 | 162 | 26 | 0 | 236 | 397 | 1 | 162 | 4.58e-95 | 281 |
| Msa0491540 | MtrunA17_Chr8g0352731 | 66.851 | 181 | 59 | 1 | 55 | 234 | 1 | 181 | 2.62e-82 | 250 |
| Msa0491540 | MtrunA17_Chr8g0380381 | 46.071 | 280 | 115 | 4 | 116 | 395 | 1 | 244 | 1.94e-78 | 242 |
| Msa0491540 | MtrunA17_Chr2g0280981 | 45.283 | 159 | 78 | 2 | 239 | 393 | 3 | 156 | 7.39e-38 | 134 |
| Msa0491540 | MtrunA17_Chr3g0111361 | 44.444 | 162 | 81 | 2 | 236 | 393 | 1 | 157 | 1.36e-37 | 133 |
| Msa0491540 | MtrunA17_Chr8g0393081 | 41.250 | 160 | 93 | 1 | 236 | 395 | 17 | 175 | 3.50e-37 | 133 |
| Msa0491540 | MtrunA17_Chr2g0290631 | 45.860 | 157 | 84 | 1 | 236 | 391 | 1 | 157 | 1.69e-34 | 125 |
| Msa0491540 | MtrunA17_Chr1g0160811 | 44.231 | 156 | 85 | 2 | 239 | 393 | 5 | 159 | 5.09e-34 | 124 |
| Msa0491540 | MtrunA17_Chr6g0478401 | 38.728 | 173 | 102 | 2 | 223 | 395 | 3 | 171 | 2.23e-31 | 117 |
| Msa0491540 | MtrunA17_Chr4g0043861 | 39.394 | 165 | 91 | 2 | 236 | 396 | 1 | 160 | 8.37e-31 | 115 |
| Msa0491540 | MtrunA17_Chr6g0481511 | 43.478 | 115 | 64 | 1 | 51 | 165 | 36 | 149 | 2.75e-24 | 100 |
| Msa0491540 | MtrunA17_Chr2g0318391 | 41.803 | 122 | 63 | 3 | 51 | 172 | 19 | 132 | 1.34e-23 | 102 |
| Msa0491540 | MtrunA17_Chr8g0360731 | 44.248 | 113 | 55 | 3 | 51 | 163 | 19 | 123 | 6.40e-23 | 100 |
| Msa0491540 | MtrunA17_Chr8g0385781 | 39.583 | 144 | 61 | 4 | 51 | 169 | 497 | 639 | 1.72e-20 | 94.0 |
| Msa0491540 | MtrunA17_Chr8g0380371 | 58.491 | 53 | 22 | 0 | 48 | 100 | 9 | 61 | 1.71e-19 | 82.0 |
| Msa0491540 | MtrunA17_Chr7g0221441 | 39.552 | 134 | 56 | 3 | 54 | 163 | 508 | 640 | 4.58e-19 | 89.4 |
| Msa0491540 | MtrunA17_Chr8g0366741 | 51.429 | 70 | 33 | 1 | 54 | 123 | 16 | 84 | 3.95e-18 | 85.5 |
| Msa0491540 | MtrunA17_Chr1g0182571 | 48.052 | 77 | 39 | 1 | 50 | 126 | 6 | 81 | 7.19e-18 | 85.1 |
| Msa0491540 | MtrunA17_Chr8g0366731 | 51.429 | 70 | 33 | 1 | 54 | 123 | 16 | 84 | 7.34e-18 | 84.7 |
| Msa0491540 | MtrunA17_Chr7g0262921 | 48.052 | 77 | 39 | 1 | 50 | 126 | 6 | 81 | 2.33e-17 | 83.6 |
| Msa0491540 | MtrunA17_Chr3g0131671 | 35.000 | 140 | 66 | 3 | 48 | 163 | 497 | 635 | 3.47e-17 | 83.6 |
| Msa0491540 | MtrunA17_Chr4g0037651 | 41.818 | 110 | 55 | 5 | 32 | 133 | 457 | 565 | 3.05e-15 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491540 | AT3G07940.1 | 67.448 | 384 | 110 | 4 | 17 | 397 | 14 | 385 | 0.0 | 527 |
| Msa0491540 | AT4G05330.3 | 48.857 | 350 | 151 | 4 | 48 | 397 | 15 | 336 | 4.42e-118 | 347 |
| Msa0491540 | AT4G05330.1 | 48.857 | 350 | 151 | 4 | 48 | 397 | 15 | 336 | 4.42e-118 | 347 |
| Msa0491540 | AT4G21160.2 | 48.286 | 350 | 154 | 4 | 48 | 397 | 15 | 337 | 1.92e-117 | 345 |
| Msa0491540 | AT4G21160.3 | 48.286 | 350 | 154 | 4 | 48 | 397 | 15 | 337 | 1.92e-117 | 345 |
| Msa0491540 | AT4G21160.1 | 48.286 | 350 | 154 | 4 | 48 | 397 | 15 | 337 | 1.92e-117 | 345 |
| Msa0491540 | AT4G21160.4 | 48.286 | 350 | 154 | 4 | 48 | 397 | 15 | 337 | 1.92e-117 | 345 |
| Msa0491540 | AT3G07940.2 | 59.846 | 259 | 89 | 4 | 17 | 272 | 14 | 260 | 8.30e-106 | 313 |
| Msa0491540 | AT4G05330.2 | 48.916 | 323 | 137 | 4 | 75 | 397 | 7 | 301 | 3.64e-105 | 313 |
| Msa0491540 | AT1G70790.3 | 45.752 | 153 | 82 | 1 | 240 | 391 | 6 | 158 | 3.76e-37 | 133 |
| Msa0491540 | AT1G70790.2 | 45.752 | 153 | 82 | 1 | 240 | 391 | 6 | 158 | 3.76e-37 | 133 |
| Msa0491540 | AT1G70790.1 | 45.752 | 153 | 82 | 1 | 240 | 391 | 6 | 158 | 3.76e-37 | 133 |
| Msa0491540 | AT1G66360.1 | 42.593 | 162 | 92 | 1 | 236 | 396 | 1 | 162 | 9.75e-37 | 132 |
| Msa0491540 | AT1G70800.1 | 42.073 | 164 | 94 | 1 | 228 | 391 | 2 | 164 | 1.60e-36 | 131 |
| Msa0491540 | AT1G73580.1 | 42.500 | 160 | 91 | 1 | 236 | 395 | 4 | 162 | 2.68e-36 | 130 |
| Msa0491540 | AT1G70810.1 | 41.139 | 158 | 92 | 1 | 236 | 393 | 1 | 157 | 3.75e-34 | 125 |
| Msa0491540 | AT5G37740.1 | 41.875 | 160 | 91 | 1 | 236 | 393 | 1 | 160 | 1.25e-33 | 123 |
| Msa0491540 | AT2G01540.1 | 42.484 | 153 | 87 | 1 | 240 | 391 | 6 | 158 | 5.75e-33 | 122 |
| Msa0491540 | AT5G47710.1 | 40.881 | 159 | 93 | 1 | 236 | 393 | 1 | 159 | 5.12e-32 | 119 |
| Msa0491540 | AT5G47710.2 | 40.881 | 159 | 93 | 1 | 236 | 393 | 1 | 159 | 5.12e-32 | 119 |
| Msa0491540 | AT5G47710.3 | 40.881 | 159 | 93 | 1 | 236 | 393 | 1 | 159 | 5.12e-32 | 119 |
| Msa0491540 | AT5G47710.4 | 40.881 | 159 | 93 | 1 | 236 | 393 | 1 | 159 | 5.12e-32 | 119 |
| Msa0491540 | AT1G48590.4 | 39.024 | 164 | 91 | 2 | 236 | 395 | 6 | 164 | 6.25e-32 | 119 |
| Msa0491540 | AT1G48590.1 | 39.024 | 164 | 91 | 2 | 236 | 395 | 6 | 164 | 6.25e-32 | 119 |
| Msa0491540 | AT1G48590.2 | 37.097 | 186 | 96 | 3 | 226 | 395 | 15 | 195 | 1.10e-31 | 119 |
| Msa0491540 | AT1G23140.1 | 37.888 | 161 | 99 | 1 | 236 | 396 | 1 | 160 | 3.07e-31 | 117 |
| Msa0491540 | AT3G17980.1 | 36.585 | 164 | 95 | 2 | 236 | 395 | 13 | 171 | 6.55e-31 | 116 |
| Msa0491540 | AT5G37740.2 | 39.412 | 170 | 91 | 2 | 236 | 393 | 1 | 170 | 1.31e-30 | 115 |
| Msa0491540 | AT5G54310.1 | 38.235 | 170 | 89 | 3 | 51 | 212 | 19 | 180 | 5.57e-25 | 106 |
| Msa0491540 | AT3G17660.4 | 40.708 | 113 | 59 | 2 | 51 | 163 | 19 | 123 | 5.78e-24 | 98.2 |
| Msa0491540 | AT3G17660.1 | 40.708 | 113 | 59 | 2 | 51 | 163 | 19 | 123 | 1.17e-23 | 99.0 |
| Msa0491540 | AT3G17660.2 | 40.708 | 113 | 59 | 2 | 51 | 163 | 19 | 123 | 3.39e-23 | 97.8 |
| Msa0491540 | AT1G70790.4 | 43.697 | 119 | 66 | 1 | 274 | 391 | 3 | 121 | 2.58e-22 | 92.8 |
| Msa0491540 | AT5G13300.1 | 46.789 | 109 | 52 | 3 | 29 | 135 | 485 | 589 | 1.57e-19 | 91.3 |
| Msa0491540 | AT5G61980.1 | 40.146 | 137 | 57 | 3 | 51 | 163 | 501 | 636 | 8.99e-19 | 89.0 |
| Msa0491540 | AT2G35210.2 | 50.725 | 69 | 33 | 1 | 54 | 122 | 16 | 83 | 1.34e-17 | 84.0 |
| Msa0491540 | AT3G17660.3 | 37.931 | 116 | 48 | 4 | 51 | 163 | 19 | 113 | 1.74e-17 | 81.3 |
| Msa0491540 | AT2G35210.1 | 50.725 | 69 | 33 | 1 | 54 | 122 | 16 | 83 | 2.35e-17 | 83.6 |
| Msa0491540 | AT1G48590.3 | 29.570 | 186 | 78 | 4 | 226 | 395 | 15 | 163 | 2.78e-17 | 79.3 |
| Msa0491540 | AT5G46750.1 | 50.725 | 69 | 33 | 1 | 54 | 122 | 16 | 83 | 4.05e-17 | 82.8 |
| Msa0491540 | AT1G10870.1 | 40.000 | 130 | 57 | 5 | 59 | 169 | 478 | 605 | 8.56e-17 | 82.8 |
| Msa0491540 | AT2G37550.2 | 46.753 | 77 | 40 | 1 | 50 | 126 | 6 | 81 | 8.95e-17 | 82.0 |
| Msa0491540 | AT2G37550.1 | 46.753 | 77 | 40 | 1 | 50 | 126 | 6 | 81 | 8.95e-17 | 82.0 |
| Msa0491540 | AT4G17890.2 | 49.275 | 69 | 34 | 1 | 54 | 122 | 19 | 86 | 1.75e-16 | 80.9 |
| Msa0491540 | AT3G53710.1 | 46.154 | 78 | 41 | 1 | 50 | 127 | 6 | 82 | 2.54e-16 | 80.9 |
| Msa0491540 | AT3G53710.3 | 46.154 | 78 | 41 | 1 | 50 | 127 | 6 | 82 | 2.54e-16 | 80.9 |
| Msa0491540 | AT3G53710.2 | 46.154 | 78 | 41 | 1 | 50 | 127 | 6 | 82 | 2.54e-16 | 80.9 |
| Msa0491540 | AT4G17890.1 | 49.275 | 69 | 34 | 1 | 54 | 122 | 19 | 86 | 2.63e-16 | 80.5 |
| Msa0491540 | AT1G10870.2 | 38.519 | 135 | 57 | 5 | 59 | 169 | 478 | 610 | 3.57e-16 | 80.9 |
| Msa0491540 | AT1G60860.2 | 54.688 | 64 | 27 | 1 | 59 | 120 | 367 | 430 | 6.06e-15 | 77.0 |
| Msa0491540 | AT1G60860.1 | 54.688 | 64 | 27 | 1 | 59 | 120 | 478 | 541 | 6.78e-15 | 77.0 |
| Msa0491540 | AT1G60860.3 | 54.688 | 64 | 27 | 1 | 59 | 120 | 307 | 370 | 6.79e-15 | 77.0 |
| Msa0491540 | AT1G03370.1 | 37.778 | 90 | 55 | 1 | 243 | 331 | 3 | 92 | 9.87e-12 | 67.4 |
| Msa0491540 | AT1G03370.2 | 37.778 | 90 | 55 | 1 | 243 | 331 | 3 | 92 | 1.81e-11 | 66.6 |
Find 89 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAATACTTACACCCATTT+TGG | 0.186231 | 3_4:+14281081 | None:intergenic |
| TATTTCCTCCACTTGAAATT+AGG | 0.226494 | 3_4:+14283479 | None:intergenic |
| ATTAAGGTTAATGTGGTTAA+AGG | 0.230072 | 3_4:-14278958 | Msa0491540:CDS |
| TTTGTCAGAAATATATTCTT+TGG | 0.235295 | 3_4:-14283675 | Msa0491540:five_prime_UTR |
| ATAGTGACATTCCTTGATTT+TGG | 0.250360 | 3_4:-14283214 | Msa0491540:five_prime_UTR |
| GTTTCAAATATTTGAGGATA+TGG | 0.252120 | 3_4:-14283192 | Msa0491540:exon |
| TGAATTTGTTGGATTGATTA+AGG | 0.287189 | 3_4:-14278974 | Msa0491540:CDS |
| AGTCAATGCAGCTTGGAAAA+TGG | 0.292719 | 3_4:-14278094 | Msa0491540:CDS |
| TCTTGCATGGGATGGTATAA+AGG | 0.323443 | 3_4:+14279794 | None:intergenic |
| GTGGATCATCAGAGCCAAAA+TGG | 0.335283 | 3_4:-14281095 | Msa0491540:CDS |
| AGAACAATTTAAATCCTGTT+TGG | 0.340329 | 3_4:-14278746 | Msa0491540:CDS |
| TCAATGGAAGAATTCGGTTT+TGG | 0.341563 | 3_4:+14280010 | None:intergenic |
| ACGAACGTACCTTAGATATA+TGG | 0.348879 | 3_4:+14280247 | None:intergenic |
| CATTATTGATGATTTCTCAT+AGG | 0.350483 | 3_4:+14278118 | None:intergenic |
| GCAGGTATGGTTGAATTTGT+TGG | 0.378256 | 3_4:-14278985 | Msa0491540:CDS |
| CCTTATGTCATCCTTTCTCT+TGG | 0.379448 | 3_4:-14278898 | Msa0491540:CDS |
| AACATCAGGTCTTCAAGTCT+TGG | 0.381673 | 3_4:-14280318 | Msa0491540:intron |
| GTCAATGCAGCTTGGAAAAT+GGG | 0.386273 | 3_4:-14278093 | Msa0491540:CDS |
| CCTAGGAGTCCATATATCTA+AGG | 0.390014 | 3_4:-14280256 | Msa0491540:intron |
| TATCTCATCTATTGAGTAAG+AGG | 0.392319 | 3_4:+14277939 | None:intergenic |
| TTAAGAGGAGGGATGTTCTC+AGG | 0.396970 | 3_4:+14278699 | None:intergenic |
| AGAGAGCGATGGATGTTATC+TGG | 0.401047 | 3_4:-14281319 | Msa0491540:intron |
| CATCCTTTCTCTTGGTCACC+AGG | 0.414383 | 3_4:-14278890 | Msa0491540:intron |
| AAGGTTGAAATTTATCAATA+AGG | 0.425508 | 3_4:+14277732 | None:intergenic |
| CGCTCCTCAATGGAAGAATT+CGG | 0.431409 | 3_4:+14280004 | None:intergenic |
| GGAATAATTTCTCTTGAAGA+AGG | 0.433305 | 3_4:-14278038 | Msa0491540:CDS |
| GGCTATCGTTTCGAAACAGC+TGG | 0.433424 | 3_4:-14279680 | Msa0491540:CDS |
| TCTCAGGGATTGAAAGCATT+AGG | 0.434077 | 3_4:+14278715 | None:intergenic |
| ATTAGGCTTTCATTCCAAAC+AGG | 0.437169 | 3_4:+14278732 | None:intergenic |
| CTATGAGAAATCATCAATAA+TGG | 0.437790 | 3_4:-14278117 | Msa0491540:CDS |
| AAACAACTAGAAATCGTATT+GGG | 0.442080 | 3_4:-14279701 | Msa0491540:CDS |
| AGTCGATTCATTGGTCAACT+TGG | 0.444047 | 3_4:-14280092 | Msa0491540:CDS |
| TCTTACTCAATAGATGAGAT+AGG | 0.452917 | 3_4:-14277937 | Msa0491540:exon |
| AGATGAGATAGGAGTAAAGA+AGG | 0.454469 | 3_4:-14277926 | Msa0491540:three_prime_UTR |
| CAAACAACTAGAAATCGTAT+TGG | 0.459695 | 3_4:-14279702 | Msa0491540:CDS |
| TTTATTTGCATCAAGTGCTC+TGG | 0.459972 | 3_4:-14280291 | Msa0491540:CDS |
| TTTACTGTTATAGGCAGGTA+TGG | 0.466561 | 3_4:-14278998 | Msa0491540:intron |
| CTTGCATGGGATGGTATAAA+GGG | 0.469438 | 3_4:+14279795 | None:intergenic |
| GCTTGAGGAACTGCTCTGAC+TGG | 0.472926 | 3_4:+14279761 | None:intergenic |
| GACAATCTGATGCGTCAAGC+AGG | 0.474603 | 3_4:-14281138 | Msa0491540:CDS |
| AAAATCAGAGCGCTCCTCAA+TGG | 0.477617 | 3_4:+14279994 | None:intergenic |
| AGACGAACAAGTCGATTCAT+TGG | 0.483436 | 3_4:-14280101 | Msa0491540:CDS |
| TGAAGAAGGGAAAGTGAGAC+AGG | 0.489048 | 3_4:-14278024 | Msa0491540:CDS |
| TCTGAAATCAATGGTATGAC+AGG | 0.489321 | 3_4:-14283149 | Msa0491540:intron |
| TGTCACTGAATCTAGATGAA+TGG | 0.499000 | 3_4:-14280126 | Msa0491540:CDS |
| CCAAGAGAAAGGATGACATA+AGG | 0.500819 | 3_4:+14278898 | None:intergenic |
| TGACTTTGAGAATTTAAACT+TGG | 0.501348 | 3_4:+14281343 | None:intergenic |
| AATATTTGAAACCAAAATCA+AGG | 0.504727 | 3_4:+14283203 | None:intergenic |
| TTTATCTTCATGCAGAGAAA+GGG | 0.506547 | 3_4:-14283265 | Msa0491540:intron |
| GATTCATTGGTCAACTTGGG+TGG | 0.513627 | 3_4:-14280088 | Msa0491540:CDS |
| TCACTATATCTCTGATAGCT+AGG | 0.520516 | 3_4:+14278929 | None:intergenic |
| CAAGAGAAAGGATGACATAA+GGG | 0.522273 | 3_4:+14278899 | None:intergenic |
| CCTTAGATATATGGACTCCT+AGG | 0.529324 | 3_4:+14280256 | None:intergenic |
| GTCGATTCATTGGTCAACTT+GGG | 0.529688 | 3_4:-14280091 | Msa0491540:CDS |
| TGAAATTAGGCATGAGCCAA+TGG | 0.532679 | 3_4:+14283492 | None:intergenic |
| GACAATACACTTGTGAAAGA+TGG | 0.535420 | 3_4:-14278059 | Msa0491540:CDS |
| GATGAGATAGGAGTAAAGAA+GGG | 0.538462 | 3_4:-14277925 | Msa0491540:three_prime_UTR |
| TGGATCATCAGAGCCAAAAT+GGG | 0.539189 | 3_4:-14281094 | Msa0491540:CDS |
| TGGATGAAGTTGTTCTTGCA+TGG | 0.540357 | 3_4:+14279781 | None:intergenic |
| TTTCTTAATCTACATAAGGA+TGG | 0.540640 | 3_4:+14277791 | None:intergenic |
| TAAGAGGAGGGATGTTCTCA+GGG | 0.542262 | 3_4:+14278700 | None:intergenic |
| TCACCTGGTGACCAAGAGAA+AGG | 0.560168 | 3_4:+14278887 | None:intergenic |
| GAATAATTTCTCTTGAAGAA+GGG | 0.562106 | 3_4:-14278037 | Msa0491540:CDS |
| CAGTGCAAAAGAGATCATAA+AGG | 0.562906 | 3_4:+14281371 | None:intergenic |
| TGTAGAGAATAAGCTGCCAT+TGG | 0.563081 | 3_4:-14283508 | Msa0491540:intron |
| GGATGAAGTTGTTCTTGCAT+GGG | 0.568696 | 3_4:+14279782 | None:intergenic |
| GATCACTAGGTCCACAGGAA+AGG | 0.571277 | 3_4:-14281164 | Msa0491540:intron |
| AACAAGTTCTGTGCTGATTG+TGG | 0.576035 | 3_4:-14281114 | Msa0491540:CDS |
| CTTCCGATCACTAGGTCCAC+AGG | 0.578366 | 3_4:-14281169 | Msa0491540:intron |
| ATAATGGAGTCAATGCAGCT+TGG | 0.580263 | 3_4:-14278101 | Msa0491540:CDS |
| AAAACCGAATTCTTCCATTG+AGG | 0.580396 | 3_4:-14280008 | Msa0491540:CDS |
| GGCTCATGCCTAATTTCAAG+TGG | 0.582598 | 3_4:-14283487 | Msa0491540:five_prime_UTR |
| GCTATCGTTTCGAAACAGCT+GGG | 0.585756 | 3_4:-14279679 | Msa0491540:CDS |
| TGGATTGATTAAGGTTAATG+TGG | 0.585859 | 3_4:-14278965 | Msa0491540:CDS |
| GTGAAAACTGAAACTGAGAC+AGG | 0.586026 | 3_4:+14277842 | None:intergenic |
| TTGTGGAGGATTGTAGCTTG+AGG | 0.590164 | 3_4:+14279746 | None:intergenic |
| TACAAAGAAGAGTAACTCGT+TGG | 0.593650 | 3_4:-14279631 | Msa0491540:intron |
| TCTGGTATACATAGAAGCCT+AGG | 0.599149 | 3_4:-14280273 | Msa0491540:CDS |
| AGATTGTCTAACCTTTCCTG+TGG | 0.600164 | 3_4:+14281153 | None:intergenic |
| CTCAAAGTCAAAGAGAGCGA+TGG | 0.600889 | 3_4:-14281330 | Msa0491540:CDS |
| GGGACAAATCAAATTCTCCT+CGG | 0.602338 | 3_4:+14279815 | None:intergenic |
| ACAATCTGATGCGTCAAGCA+GGG | 0.621759 | 3_4:-14281137 | Msa0491540:CDS |
| GAAGTTGTTCTTGCATGGGA+TGG | 0.622829 | 3_4:+14279786 | None:intergenic |
| AGGAATGTCACTATAATCTG+AGG | 0.645784 | 3_4:+14283223 | None:intergenic |
| TCATGCCTAATTTCAAGTGG+AGG | 0.646065 | 3_4:-14283484 | Msa0491540:five_prime_UTR |
| CTTGGAAAATGGGTAGCAAG+TGG | 0.649585 | 3_4:-14278083 | Msa0491540:CDS |
| AGGCTACAAAATGTTGAGAG+AGG | 0.650552 | 3_4:-14277990 | Msa0491540:CDS |
| CTATCGTTTCGAAACAGCTG+GGG | 0.668346 | 3_4:-14279678 | Msa0491540:CDS |
| TGAGACAGGAAATCTCATTG+AGG | 0.699747 | 3_4:-14278010 | Msa0491540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGAATTTTAAGTTAATT+AGG | - | chr3_4:14279118-14279137 | Msa0491540:intron | 10.0% |
| !!! | TTTGAATTTTAAGTTAATTA+GGG | - | chr3_4:14279119-14279138 | Msa0491540:intron | 10.0% |
| !! | AAAATTTATCAAAACTAAAT+TGG | + | chr3_4:14280612-14280631 | None:intergenic | 10.0% |
| !!! | AATTTACAAAAATTACATTT+TGG | - | chr3_4:14283521-14283540 | Msa0491540:intron | 10.0% |
| !! | GATAAATGTAACAATTAAAA+GGG | + | chr3_4:14280127-14280146 | None:intergenic | 15.0% |
| !! | TGATAAATGTAACAATTAAA+AGG | + | chr3_4:14280128-14280147 | None:intergenic | 15.0% |
| !!! | TCTTTTTAATTTTATTATCC+AGG | - | chr3_4:14281544-14281563 | Msa0491540:intron | 15.0% |
| !! | AAACAAAAAATATATACTAC+AGG | - | chr3_4:14282143-14282162 | Msa0491540:intron | 15.0% |
| !! | AACAAAAAATATATACTACA+GGG | - | chr3_4:14282144-14282163 | Msa0491540:intron | 15.0% |
| !! | TACTAAAACAAAATGTTAAA+AGG | - | chr3_4:14282221-14282240 | Msa0491540:intron | 15.0% |
| !!! | TATTTTTCTTAATCTACATA+AGG | + | chr3_4:14283629-14283648 | None:intergenic | 15.0% |
| !! | TTTGTCAGAAATATATTCTT+TGG | - | chr3_4:14277738-14277757 | Msa0491540:three_prime_UTR | 20.0% |
| !! | GAAATATCAAAATCAAAACA+TGG | + | chr3_4:14277851-14277870 | None:intergenic | 20.0% |
| !!! | TGATTTTGATATTTCTCTTT+TGG | - | chr3_4:14277856-14277875 | Msa0491540:three_prime_UTR | 20.0% |
| !! | AAAATGTCATAATACAAGAT+TGG | + | chr3_4:14278043-14278062 | None:intergenic | 20.0% |
| !!! | AATATTTGAAACCAAAATCA+AGG | + | chr3_4:14278213-14278232 | None:intergenic | 20.0% |
| !!! | ATTTTGGTTTCAAATATTTG+AGG | - | chr3_4:14278215-14278234 | Msa0491540:intron | 20.0% |
| !!! | TTTTAAATTATTATCCGTGT+CGG | + | chr3_4:14278510-14278529 | None:intergenic | 20.0% |
| !! | TTCAGTGTAATTATATTTGT+CGG | + | chr3_4:14278999-14279018 | None:intergenic | 20.0% |
| !! | AACTATCCTATTAATCTATA+AGG | + | chr3_4:14279172-14279191 | None:intergenic | 20.0% |
| !!! | AATTTTTGTTCTGAATTTTG+AGG | - | chr3_4:14279210-14279229 | Msa0491540:intron | 20.0% |
| !!! | ATTTTTGTTCTGAATTTTGA+GGG | - | chr3_4:14279211-14279230 | Msa0491540:intron | 20.0% |
| !! | AAATTAAACATGATCTATGA+GGG | - | chr3_4:14279375-14279394 | Msa0491540:intron | 20.0% |
| !! | ACAATAAATTATCTGTTATC+AGG | - | chr3_4:14279410-14279429 | Msa0491540:intron | 20.0% |
| !!! | TCCATTTTCTTAAATATTAC+TGG | + | chr3_4:14279614-14279633 | None:intergenic | 20.0% |
| !! | TACAAATGCTTAAAAACAAA+CGG | + | chr3_4:14279818-14279837 | None:intergenic | 20.0% |
| !! | AAATTAAATGTCTCAATTGT+AGG | - | chr3_4:14280004-14280023 | Msa0491540:CDS | 20.0% |
| !!! | TAATTTGTTTATCCAAACAT+GGG | + | chr3_4:14280654-14280673 | None:intergenic | 20.0% |
| !!! | TTAATTTGTTTATCCAAACA+TGG | + | chr3_4:14280655-14280674 | None:intergenic | 20.0% |
| !! | AAAATAAAAAAATTTGTCCG+AGG | + | chr3_4:14280930-14280949 | None:intergenic | 20.0% |
| !! | ATTCATATTTATCTTGAGAT+AGG | - | chr3_4:14281503-14281522 | Msa0491540:intron | 20.0% |
| !! | TAAAAAGAAAAGTGAAACAA+TGG | + | chr3_4:14281532-14281551 | None:intergenic | 20.0% |
| !! | AATAGAACAAAAAAATTGCA+GGG | + | chr3_4:14281942-14281961 | None:intergenic | 20.0% |
| !! | TAATAGAACAAAAAAATTGC+AGG | + | chr3_4:14281943-14281962 | None:intergenic | 20.0% |
| !!! | TTTTGAGTTTCTAACATATA+GGG | + | chr3_4:14282125-14282144 | None:intergenic | 20.0% |
| !!! | TTTTTGAGTTTCTAACATAT+AGG | + | chr3_4:14282126-14282145 | None:intergenic | 20.0% |
| !!! | TTTTAGTACTTATGAAGTTA+TGG | + | chr3_4:14282209-14282228 | None:intergenic | 20.0% |
| !! | ACTGAAAGAGAAAAAAAATA+GGG | - | chr3_4:14282244-14282263 | Msa0491540:intron | 20.0% |
| !!! | ATTCAACTTACTATTTTAAG+AGG | + | chr3_4:14282732-14282751 | None:intergenic | 20.0% |
| !!! | ATTATCTCTAAGTGTTTTTT+TGG | - | chr3_4:14283652-14283671 | Msa0491540:five_prime_UTR | 20.0% |
| !! | AAGGTTGAAATTTATCAATA+AGG | + | chr3_4:14283684-14283703 | None:intergenic | 20.0% |
| !!! | TTTTTGAAATCAATCTCTGA+GGG | + | chr3_4:14277775-14277794 | None:intergenic | 25.0% |
| !!! | TTTTTTGAAATCAATCTCTG+AGG | + | chr3_4:14277776-14277795 | None:intergenic | 25.0% |
| ! | GATTGGAAAAACATGAAAAA+TGG | + | chr3_4:14278026-14278045 | None:intergenic | 25.0% |
| ! | GTTTCAAATATTTGAGGATA+TGG | - | chr3_4:14278221-14278240 | Msa0491540:intron | 25.0% |
| !! | CAAGAAAAATCTGAAATCAA+TGG | - | chr3_4:14278255-14278274 | Msa0491540:intron | 25.0% |
| ! | ATTCATTATATCACTTCGAT+GGG | + | chr3_4:14278330-14278349 | None:intergenic | 25.0% |
| ! | AGATAATTCAGTGTAATCAT+AGG | - | chr3_4:14278535-14278554 | Msa0491540:intron | 25.0% |
| ! | AAACATGTTTAACCAAAACA+AGG | + | chr3_4:14278813-14278832 | None:intergenic | 25.0% |
| ! | TGAGTTCCTTATAGATTAAT+AGG | - | chr3_4:14279163-14279182 | Msa0491540:intron | 25.0% |
| !! | TTTAATTTCTTTCCTTGAGA+AGG | + | chr3_4:14279363-14279382 | None:intergenic | 25.0% |
| ! | GAAATTAAACATGATCTATG+AGG | - | chr3_4:14279374-14279393 | Msa0491540:intron | 25.0% |
| ! | ACAGATAATTTATTGTAGAC+AGG | + | chr3_4:14279406-14279425 | None:intergenic | 25.0% |
| ! | GCCAGTAATATTTAAGAAAA+TGG | - | chr3_4:14279610-14279629 | Msa0491540:intron | 25.0% |
| !! | ACTTTGAGAATTTAAACTTG+AGG | - | chr3_4:14279765-14279784 | Msa0491540:CDS | 25.0% |
| !!! | ACTCGACTTTTTTTTTCATA+AGG | + | chr3_4:14279794-14279813 | None:intergenic | 25.0% |
| !!! | ATTTGTAAGTTGAGTTTTCA+AGG | - | chr3_4:14279831-14279850 | Msa0491540:CDS | 25.0% |
| !!! | TTTGTAAGTTGAGTTTTCAA+GGG | - | chr3_4:14279832-14279851 | Msa0491540:CDS | 25.0% |
| !! | TGACTTTGAGAATTTAAACT+TGG | + | chr3_4:14279763-14279782 | None:intergenic | 25.0% |
| ! | ATCAAATAACCAACATTATC+CGG | - | chr3_4:14280144-14280163 | Msa0491540:intron | 25.0% |
| !!! | TTGTTTGAAAAGCATTATCT+TGG | - | chr3_4:14280401-14280420 | Msa0491540:intron | 25.0% |
| !!! | TTTTTTCAGATAAGTGCTTA+TGG | - | chr3_4:14280749-14280768 | Msa0491540:intron | 25.0% |
| ! | ACATGATTTGACATGATTAT+AGG | - | chr3_4:14281261-14281280 | Msa0491540:intron | 25.0% |
| !!! | TTTGGTTTTTTTATGTAGCT+TGG | + | chr3_4:14281388-14281407 | None:intergenic | 25.0% |
| !! | GATTTTATTAGGTAACTAAC+TGG | - | chr3_4:14281436-14281455 | Msa0491540:intron | 25.0% |
| !!! | TCATAACGTTTTTTTTCTTG+TGG | + | chr3_4:14281687-14281706 | None:intergenic | 25.0% |
| ! | AAACAACTAGAAATCGTATT+GGG | - | chr3_4:14281712-14281731 | Msa0491540:intron | 25.0% |
| ! | CTAAAGATGGATATATTACT+GGG | + | chr3_4:14281903-14281922 | None:intergenic | 25.0% |
| ! | TAGACTAAAGCGAAAAAATA+GGG | + | chr3_4:14281970-14281989 | None:intergenic | 25.0% |
| ! | ATAGACTAAAGCGAAAAAAT+AGG | + | chr3_4:14281971-14281990 | None:intergenic | 25.0% |
| ! | GACTGAAAGAGAAAAAAAAT+AGG | - | chr3_4:14282243-14282262 | Msa0491540:intron | 25.0% |
| ! | GAGAAAAAAAATAGGGATAA+AGG | - | chr3_4:14282251-14282270 | Msa0491540:intron | 25.0% |
| !!! | TGAATTTGTTGGATTGATTA+AGG | - | chr3_4:14282439-14282458 | Msa0491540:intron | 25.0% |
| ! | ATTAAGGTTAATGTGGTTAA+AGG | - | chr3_4:14282455-14282474 | Msa0491540:intron | 25.0% |
| ! | AGAACAATTTAAATCCTGTT+TGG | - | chr3_4:14282667-14282686 | Msa0491540:intron | 25.0% |
| !!! | AACTTACTATTTTAAGAGGA+GGG | + | chr3_4:14282728-14282747 | None:intergenic | 25.0% |
| ! | CATCATTTGAAAAATAAGCT+TGG | - | chr3_4:14282773-14282792 | Msa0491540:intron | 25.0% |
| ! | TTGAAAAATAAGCTTGGAAT+TGG | - | chr3_4:14282779-14282798 | Msa0491540:intron | 25.0% |
| !! | ATTCAAAAACGACGATTTTA+TGG | - | chr3_4:14283227-14283246 | Msa0491540:five_prime_UTR | 25.0% |
| !! | TTCAAAAACGACGATTTTAT+GGG | - | chr3_4:14283228-14283247 | Msa0491540:five_prime_UTR | 25.0% |
| !! | CATTATTGATGATTTCTCAT+AGG | + | chr3_4:14283298-14283317 | None:intergenic | 25.0% |
| ! | CTATGAGAAATCATCAATAA+TGG | - | chr3_4:14283296-14283315 | Msa0491540:intron | 25.0% |
| ! | GAATAATTTCTCTTGAAGAA+GGG | - | chr3_4:14283376-14283395 | Msa0491540:intron | 25.0% |
| ! | TTTCTTAATCTACATAAGGA+TGG | + | chr3_4:14283625-14283644 | None:intergenic | 25.0% |
| TATTTCCTCCACTTGAAATT+AGG | + | chr3_4:14277937-14277956 | None:intergenic | 30.0% | |
| ! | GATCTGTAAGATTTTTCTGT+TGG | - | chr3_4:14277965-14277984 | Msa0491540:CDS | 30.0% |
| TCTCTGCATGAAGATAAAAA+GGG | + | chr3_4:14278146-14278165 | None:intergenic | 30.0% | |
| TTCTCTGCATGAAGATAAAA+AGG | + | chr3_4:14278147-14278166 | None:intergenic | 30.0% | |
| ! | TTTTATCTTCATGCAGAGAA+AGG | - | chr3_4:14278147-14278166 | Msa0491540:CDS | 30.0% |
| TTTATCTTCATGCAGAGAAA+GGG | - | chr3_4:14278148-14278167 | Msa0491540:CDS | 30.0% | |
| AGAAAGGGATGAAAAATACA+TGG | - | chr3_4:14278163-14278182 | Msa0491540:CDS | 30.0% | |
| ! | ATAGTGACATTCCTTGATTT+TGG | - | chr3_4:14278199-14278218 | Msa0491540:CDS | 30.0% |
| ! | GAAGAAAGAATGATGGAAAA+GGG | + | chr3_4:14278304-14278323 | None:intergenic | 30.0% |
| TTCATTATATCACTTCGATG+GGG | + | chr3_4:14278329-14278348 | None:intergenic | 30.0% | |
| CATTCATTATATCACTTCGA+TGG | + | chr3_4:14278331-14278350 | None:intergenic | 30.0% | |
| CATCGAAGTGATATAATGAA+TGG | - | chr3_4:14278329-14278348 | Msa0491540:intron | 30.0% | |
| GAACAACAAGAATAAGTCAT+TGG | - | chr3_4:14278362-14278381 | Msa0491540:intron | 30.0% | |
| GTTTATGATAAACCAATCCA+TGG | - | chr3_4:14278829-14278848 | Msa0491540:intron | 30.0% | |
| GTCAGTGTAATTATATGAGT+CGG | + | chr3_4:14278970-14278989 | None:intergenic | 30.0% | |
| AATTAGGGATGTTACTACAA+TGG | - | chr3_4:14279134-14279153 | Msa0491540:intron | 30.0% | |
| TTTCTCAAGACATCTTGTAT+TGG | - | chr3_4:14279439-14279458 | Msa0491540:intron | 30.0% | |
| CTTCAAATTAAAGGTTTGTC+AGG | + | chr3_4:14279674-14279693 | None:intergenic | 30.0% | |
| GAAACAATAAAAGAGACAGA+TGG | + | chr3_4:14279724-14279743 | None:intergenic | 30.0% | |
| AGTGTAAGCTCAAAGATTAA+GGG | + | chr3_4:14280213-14280232 | None:intergenic | 30.0% | |
| TAGTGTAAGCTCAAAGATTA+AGG | + | chr3_4:14280214-14280233 | None:intergenic | 30.0% | |
| AAGGAACAATAAGATTTGTG+TGG | + | chr3_4:14280458-14280477 | None:intergenic | 30.0% | |
| TCTCAGTTATAACTTAGACA+AGG | + | chr3_4:14280477-14280496 | None:intergenic | 30.0% | |
| ! | AGTTGAAATTGATAGTCCTA+AGG | + | chr3_4:14280511-14280530 | None:intergenic | 30.0% |
| AAACTATACAAATCATGCTG+CGG | + | chr3_4:14280568-14280587 | None:intergenic | 30.0% | |
| ACTTATTTAAGCTGATCTAC+TGG | + | chr3_4:14280842-14280861 | None:intergenic | 30.0% | |
| ! | ATCACAAGAAGTTTAGAATG+AGG | - | chr3_4:14280960-14280979 | Msa0491540:intron | 30.0% |
| ATAGAAAGTTTCATGTCTCA+AGG | + | chr3_4:14280991-14281010 | None:intergenic | 30.0% | |
| ! | ATATGAGCTGCAACAATTTT+TGG | - | chr3_4:14281572-14281591 | Msa0491540:intron | 30.0% |
| !!! | TAACGTTTTTTTTCTTGTGG+AGG | + | chr3_4:14281684-14281703 | None:intergenic | 30.0% |
| CAAACAACTAGAAATCGTAT+TGG | - | chr3_4:14281711-14281730 | Msa0491540:intron | 30.0% | |
| CCTAAAGATGGATATATTAC+TGG | + | chr3_4:14281904-14281923 | None:intergenic | 30.0% | |
| CCAGTAATATATCCATCTTT+AGG | - | chr3_4:14281901-14281920 | Msa0491540:intron | 30.0% | |
| !! | ATCTTTAGGTTTTGTCGAAA+CGG | - | chr3_4:14281915-14281934 | Msa0491540:intron | 30.0% |
| GCTTTAGTCTATGTAACATT+TGG | - | chr3_4:14281979-14281998 | Msa0491540:intron | 30.0% | |
| TCCCTATATGTTTGAAAACT+CGG | - | chr3_4:14282017-14282036 | Msa0491540:intron | 30.0% | |
| ! | ACCGAGTTTTCAAACATATA+GGG | + | chr3_4:14282021-14282040 | None:intergenic | 30.0% |
| ! | TACCGAGTTTTCAAACATAT+AGG | + | chr3_4:14282022-14282041 | None:intergenic | 30.0% |
| ! | TAGGGATAAAGGTATATTAC+AGG | - | chr3_4:14282262-14282281 | Msa0491540:intron | 30.0% |
| ! | AGGGATAAAGGTATATTACA+GGG | - | chr3_4:14282263-14282282 | Msa0491540:intron | 30.0% |
| TTCTCCCTATTTACTGTTAT+AGG | - | chr3_4:14282406-14282425 | Msa0491540:intron | 30.0% | |
| TGGATTGATTAAGGTTAATG+TGG | - | chr3_4:14282448-14282467 | Msa0491540:intron | 30.0% | |
| ACTTATCATAATGCTTGCAA+AGG | - | chr3_4:14282575-14282594 | Msa0491540:intron | 30.0% | |
| TTATTATCTGATCTTGCAGT+CGG | - | chr3_4:14282626-14282645 | Msa0491540:intron | 30.0% | |
| !! | CAACTTACTATTTTAAGAGG+AGG | + | chr3_4:14282729-14282748 | None:intergenic | 30.0% |
| AAATGATGTCTCACAGAAAA+TGG | + | chr3_4:14282761-14282780 | None:intergenic | 30.0% | |
| TACCTTAATCTTACTTCTCA+AGG | - | chr3_4:14282817-14282836 | Msa0491540:intron | 30.0% | |
| ACCTTAATCTTACTTCTCAA+GGG | - | chr3_4:14282818-14282837 | Msa0491540:intron | 30.0% | |
| ! | TCTAACTTGTAGCTAGAATT+CGG | - | chr3_4:14282934-14282953 | Msa0491540:intron | 30.0% |
| !!! | TTTTGCCTCTAGAATTCATT+TGG | - | chr3_4:14282960-14282979 | Msa0491540:intron | 30.0% |
| AAGTTCCAAATGAATTCTAG+AGG | + | chr3_4:14282968-14282987 | None:intergenic | 30.0% | |
| !! | CATGCTCTTCTTTTAAGTAA+TGG | + | chr3_4:14283131-14283150 | None:intergenic | 30.0% |
| CATTACTTAAAAGAAGAGCA+TGG | - | chr3_4:14283129-14283148 | Msa0491540:intron | 30.0% | |
| TTATCAAACATGAAATCCAG+AGG | + | chr3_4:14283162-14283181 | None:intergenic | 30.0% | |
| TCATATACAATCTGCATGTA+AGG | + | chr3_4:14283198-14283217 | None:intergenic | 30.0% | |
| GGAATAATTTCTCTTGAAGA+AGG | - | chr3_4:14283375-14283394 | Msa0491540:intron | 30.0% | |
| TATCTCATCTATTGAGTAAG+AGG | + | chr3_4:14283477-14283496 | None:intergenic | 30.0% | |
| TCTTACTCAATAGATGAGAT+AGG | - | chr3_4:14283476-14283495 | Msa0491540:five_prime_UTR | 30.0% | |
| AGGAATGTCACTATAATCTG+AGG | + | chr3_4:14278193-14278212 | None:intergenic | 35.0% | |
| ! | TCTGAAATCAATGGTATGAC+AGG | - | chr3_4:14278264-14278283 | Msa0491540:intron | 35.0% |
| ! | GGAAGAAAGAATGATGGAAA+AGG | + | chr3_4:14278305-14278324 | None:intergenic | 35.0% |
| !! | TGAAGTGTTGGTGTTACATA+CGG | + | chr3_4:14278400-14278419 | None:intergenic | 35.0% |
| ! | ACGTCTTCAATTTGAAGTGT+TGG | + | chr3_4:14278412-14278431 | None:intergenic | 35.0% |
| AATTGAAGACGTGTATGTGT+TGG | - | chr3_4:14278420-14278439 | Msa0491540:intron | 35.0% | |
| TGTGTAGTACCTATGAAGTA+GGG | - | chr3_4:14278443-14278462 | Msa0491540:intron | 35.0% | |
| TATGAAGCACAAACACTCTT+CGG | + | chr3_4:14278620-14278639 | None:intergenic | 35.0% | |
| CATGTTTAACCAAAACAAGG+AGG | + | chr3_4:14278810-14278829 | None:intergenic | 35.0% | |
| TCATGACAAGCTATGAAACA+CGG | - | chr3_4:14278898-14278917 | Msa0491540:CDS | 35.0% | |
| !! | TACTTGTTGTCTATGAACCA+CGG | + | chr3_4:14279097-14279116 | None:intergenic | 35.0% |
| TTGCATTAGTCACTACCATA+TGG | + | chr3_4:14279258-14279277 | None:intergenic | 35.0% | |
| TTTCTTTCCTTGAGAAGGTT+GGG | + | chr3_4:14279358-14279377 | None:intergenic | 35.0% | |
| ATTTCTTTCCTTGAGAAGGT+TGG | + | chr3_4:14279359-14279378 | None:intergenic | 35.0% | |
| ! | CAAGAAACATCAGAAGCTTT+TGG | + | chr3_4:14279521-14279540 | None:intergenic | 35.0% |
| AGCTTCTGATGTTTCTTGTA+TGG | - | chr3_4:14279523-14279542 | Msa0491540:intron | 35.0% | |
| ! | GCACTGTCACTTCAAATTAA+AGG | + | chr3_4:14279683-14279702 | None:intergenic | 35.0% |
| AATGTCTCAATTGTAGGATC+AGG | - | chr3_4:14280010-14280029 | Msa0491540:CDS | 35.0% | |
| CAGTGCAAAAGAGATCATAA+AGG | + | chr3_4:14280045-14280064 | None:intergenic | 35.0% | |
| AACATAAACACTTGTGAGAC+CGG | + | chr3_4:14280166-14280185 | None:intergenic | 35.0% | |
| TCAAAGATTAAGGGTCTGTT+TGG | + | chr3_4:14280204-14280223 | None:intergenic | 35.0% | |
| ! | GTGAATACTTACACCCATTT+TGG | + | chr3_4:14280335-14280354 | None:intergenic | 35.0% |
| ACGTTTAATTAGCCCATGTT+TGG | - | chr3_4:14280639-14280658 | Msa0491540:intron | 35.0% | |
| GTTTATCTCTCCTACTTGTA+AGG | - | chr3_4:14280886-14280905 | Msa0491540:intron | 35.0% | |
| TTTATTTGCATCAAGTGCTC+TGG | - | chr3_4:14281122-14281141 | Msa0491540:CDS | 35.0% | |
| ACGAACGTACCTTAGATATA+TGG | + | chr3_4:14281169-14281188 | None:intergenic | 35.0% | |
| TGTCACTGAATCTAGATGAA+TGG | - | chr3_4:14281287-14281306 | Msa0491540:intron | 35.0% | |
| ! | TCAATGGAAGAATTCGGTTT+TGG | + | chr3_4:14281406-14281425 | None:intergenic | 35.0% |
| AAAACCGAATTCTTCCATTG+AGG | - | chr3_4:14281405-14281424 | Msa0491540:intron | 35.0% | |
| TACAAAGAAGAGTAACTCGT+TGG | - | chr3_4:14281782-14281801 | Msa0491540:intron | 35.0% | |
| GTTTCGACAAAACCTAAAGA+TGG | + | chr3_4:14281916-14281935 | None:intergenic | 35.0% | |
| ATGTTTGAAAACTCGGTATC+CGG | - | chr3_4:14282024-14282043 | Msa0491540:intron | 35.0% | |
| ! | TTTTGCCTCTGGATTTAAGT+GGG | + | chr3_4:14282102-14282121 | None:intergenic | 35.0% |
| ! | CTCAAGATGATTCTCAGTTT+TGG | + | chr3_4:14282290-14282309 | None:intergenic | 35.0% |
| CTGAGAATCATCTTGAGAAA+TGG | - | chr3_4:14282293-14282312 | Msa0491540:intron | 35.0% | |
| CCTGCCTATAACAGTAAATA+GGG | + | chr3_4:14282413-14282432 | None:intergenic | 35.0% | |
| ACCTGCCTATAACAGTAAAT+AGG | + | chr3_4:14282414-14282433 | None:intergenic | 35.0% | |
| TTTACTGTTATAGGCAGGTA+TGG | - | chr3_4:14282415-14282434 | Msa0491540:intron | 35.0% | |
| TCACTATATCTCTGATAGCT+AGG | + | chr3_4:14282487-14282506 | None:intergenic | 35.0% | |
| CAAGAGAAAGGATGACATAA+GGG | + | chr3_4:14282517-14282536 | None:intergenic | 35.0% | |
| ATTAGGCTTTCATTCCAAAC+AGG | + | chr3_4:14282684-14282703 | None:intergenic | 35.0% | |
| !!! | TAAGCTTGGAATTGGTCTTT+TGG | - | chr3_4:14282787-14282806 | Msa0491540:intron | 35.0% |
| TCCCTTGAGAAGTAAGATTA+AGG | + | chr3_4:14282822-14282841 | None:intergenic | 35.0% | |
| !! | TGGTTCCACTTTTGTATGTT+TGG | - | chr3_4:14282846-14282865 | Msa0491540:intron | 35.0% |
| TGGAACCAAACATACAAAAG+TGG | + | chr3_4:14282854-14282873 | None:intergenic | 35.0% | |
| !! | TGTATGTTTGGTTCCACTTT+TGG | - | chr3_4:14282858-14282877 | Msa0491540:intron | 35.0% |
| !!! | AATTTTGGCTACTCCAAAAG+TGG | + | chr3_4:14282874-14282893 | None:intergenic | 35.0% |
| ! | TACACCTCTAGCATCAATTT+TGG | + | chr3_4:14282889-14282908 | None:intergenic | 35.0% |
| ! | TTGAATCAAGTGCGTGTTTT+TGG | + | chr3_4:14283097-14283116 | None:intergenic | 35.0% |
| GACAATACACTTGTGAAAGA+TGG | - | chr3_4:14283354-14283373 | Msa0491540:intron | 35.0% | |
| AGATGAGATAGGAGTAAAGA+AGG | - | chr3_4:14283487-14283506 | Msa0491540:five_prime_UTR | 35.0% | |
| GATGAGATAGGAGTAAAGAA+GGG | - | chr3_4:14283488-14283507 | Msa0491540:five_prime_UTR | 35.0% | |
| ! | GTCTGTTTTCACAAGCAAAA+AGG | + | chr3_4:14283703-14283722 | None:intergenic | 35.0% |
| TGTAGAGAATAAGCTGCCAT+TGG | - | chr3_4:14277905-14277924 | Msa0491540:three_prime_UTR | 40.0% | |
| TGAAATTAGGCATGAGCCAA+TGG | + | chr3_4:14277924-14277943 | None:intergenic | 40.0% | |
| ! | TCATGCCTAATTTCAAGTGG+AGG | - | chr3_4:14277929-14277948 | Msa0491540:exon | 40.0% |
| ATTATATCACTTCGATGGGG+AGG | + | chr3_4:14278326-14278345 | None:intergenic | 40.0% | |
| GTGTGTAGTACCTATGAAGT+AGG | - | chr3_4:14278442-14278461 | Msa0491540:intron | 40.0% | |
| ! | ACAAACACTCTTCGGATTAG+GGG | + | chr3_4:14278612-14278631 | None:intergenic | 40.0% |
| CACAAACACTCTTCGGATTA+GGG | + | chr3_4:14278613-14278632 | None:intergenic | 40.0% | |
| GATATATGAGACACCAACAC+AGG | - | chr3_4:14278652-14278671 | Msa0491540:intron | 40.0% | |
| CTGAATATAACCACCTGTGT+TGG | + | chr3_4:14278668-14278687 | None:intergenic | 40.0% | |
| GTTTAACCAAAACAAGGAGG+AGG | + | chr3_4:14278807-14278826 | None:intergenic | 40.0% | |
| ATCTCTTCTCAACCATGGAT+TGG | + | chr3_4:14278844-14278863 | None:intergenic | 40.0% | |
| TATGAAACACGGATACTCCT+CGG | - | chr3_4:14278909-14278928 | Msa0491540:CDS | 40.0% | |
| TTGTCTATGAACCACGGATA+CGG | + | chr3_4:14279091-14279110 | None:intergenic | 40.0% | |
| TTAGTCACTACCATATGGTG+CGG | + | chr3_4:14279253-14279272 | None:intergenic | 40.0% | |
| AGTGACAGTGCTACATACAA+AGG | - | chr3_4:14279692-14279711 | Msa0491540:CDS | 40.0% | |
| GTGACAGTGCTACATACAAA+GGG | - | chr3_4:14279693-14279712 | Msa0491540:CDS | 40.0% | |
| AAGCTTCACTTGCAAGAGAA+AGG | - | chr3_4:14279865-14279884 | Msa0491540:intron | 40.0% | |
| TCACAAGTCAGCGTGTATAA+TGG | - | chr3_4:14279960-14279979 | Msa0491540:intron | 40.0% | |
| GTGTATAATGGTATCTCGAC+AGG | - | chr3_4:14279972-14279991 | Msa0491540:intron | 40.0% | |
| AGATTGTCTAACCTTTCCTG+TGG | + | chr3_4:14280263-14280282 | None:intergenic | 40.0% | |
| !! | AACAAGTTCTGTGCTGATTG+TGG | - | chr3_4:14280299-14280318 | Msa0491540:CDS | 40.0% |
| TGGATCATCAGAGCCAAAAT+GGG | - | chr3_4:14280319-14280338 | Msa0491540:intron | 40.0% | |
| TGAGAAGCTAAAGATGCCTT+AGG | - | chr3_4:14280492-14280511 | Msa0491540:intron | 40.0% | |
| TTAGCACTTGTGAGAGCTTA+TGG | + | chr3_4:14280817-14280836 | None:intergenic | 40.0% | |
| GGAGAGATAAACCACACTAA+GGG | + | chr3_4:14280878-14280897 | None:intergenic | 40.0% | |
| AGGAGAGATAAACCACACTA+AGG | + | chr3_4:14280879-14280898 | None:intergenic | 40.0% | |
| !! | ACTAAGAGCACCTTACAAGT+AGG | + | chr3_4:14280899-14280918 | None:intergenic | 40.0% |
| GCTCTTAGTAACATTGTCCT+CGG | - | chr3_4:14280910-14280929 | Msa0491540:intron | 40.0% | |
| AACATCAGGTCTTCAAGTCT+TGG | - | chr3_4:14281095-14281114 | Msa0491540:CDS | 40.0% | |
| TCTGGTATACATAGAAGCCT+AGG | - | chr3_4:14281140-14281159 | Msa0491540:CDS | 40.0% | |
| CCTTAGATATATGGACTCCT+AGG | + | chr3_4:14281160-14281179 | None:intergenic | 40.0% | |
| CCTAGGAGTCCATATATCTA+AGG | - | chr3_4:14281157-14281176 | Msa0491540:CDS | 40.0% | |
| ! | AGACGAACAAGTCGATTCAT+TGG | - | chr3_4:14281312-14281331 | Msa0491540:intron | 40.0% |
| ! | AGTCGATTCATTGGTCAACT+TGG | - | chr3_4:14281321-14281340 | Msa0491540:CDS | 40.0% |
| ! | GTCGATTCATTGGTCAACTT+GGG | - | chr3_4:14281322-14281341 | Msa0491540:CDS | 40.0% |
| !!! | AGGAGCGCTCTGATTTTATT+AGG | - | chr3_4:14281425-14281444 | Msa0491540:intron | 40.0% |
| ! | TTGCAGCTCATATTTTCTCC+TGG | + | chr3_4:14281565-14281584 | None:intergenic | 40.0% |
| !! | GCAACAATTTTTGGATTCCG+AGG | - | chr3_4:14281581-14281600 | Msa0491540:intron | 40.0% |
| GGGACAAATCAAATTCTCCT+CGG | + | chr3_4:14281601-14281620 | None:intergenic | 40.0% | |
| CTTGCATGGGATGGTATAAA+GGG | + | chr3_4:14281621-14281640 | None:intergenic | 40.0% | |
| TCTTGCATGGGATGGTATAA+AGG | + | chr3_4:14281622-14281641 | None:intergenic | 40.0% | |
| GGATGAAGTTGTTCTTGCAT+GGG | + | chr3_4:14281634-14281653 | None:intergenic | 40.0% | |
| TGGATGAAGTTGTTCTTGCA+TGG | + | chr3_4:14281635-14281654 | None:intergenic | 40.0% | |
| !! | GATTGGTCTCTCGAATTAGT+CGG | + | chr3_4:14282058-14282077 | None:intergenic | 40.0% |
| TTTGCCTCTGGATTTAAGTG+GGG | + | chr3_4:14282101-14282120 | None:intergenic | 40.0% | |
| ! | GTTTTGCCTCTGGATTTAAG+TGG | + | chr3_4:14282103-14282122 | None:intergenic | 40.0% |
| ! | AACATATAGGGTTTTGCCTC+TGG | + | chr3_4:14282113-14282132 | None:intergenic | 40.0% |
| CCCTATTTACTGTTATAGGC+AGG | - | chr3_4:14282410-14282429 | Msa0491540:intron | 40.0% | |
| GCAGGTATGGTTGAATTTGT+TGG | - | chr3_4:14282428-14282447 | Msa0491540:intron | 40.0% | |
| CCAAGAGAAAGGATGACATA+AGG | + | chr3_4:14282518-14282537 | None:intergenic | 40.0% | |
| CCTTATGTCATCCTTTCTCT+TGG | - | chr3_4:14282515-14282534 | Msa0491540:intron | 40.0% | |
| TTGACATGAAGAAACTCACC+TGG | + | chr3_4:14282544-14282563 | None:intergenic | 40.0% | |
| CTTACTTCTCAAGGGATCTT+TGG | - | chr3_4:14282826-14282845 | Msa0491540:intron | 40.0% | |
| GTAGCCAAAATTGATGCTAG+AGG | - | chr3_4:14282882-14282901 | Msa0491540:intron | 40.0% | |
| CAAGTTAGAAGCAACACTAG+AGG | + | chr3_4:14282923-14282942 | None:intergenic | 40.0% | |
| !!! | AGTGCGTGTTTTTGGTTTTG+TGG | + | chr3_4:14283089-14283108 | None:intergenic | 40.0% |
| ! | GCTTTTGCTGCTGATACTAA+TGG | + | chr3_4:14283276-14283295 | None:intergenic | 40.0% |
| ! | ATAATGGAGTCAATGCAGCT+TGG | - | chr3_4:14283312-14283331 | Msa0491540:intron | 40.0% |
| AGTCAATGCAGCTTGGAAAA+TGG | - | chr3_4:14283319-14283338 | Msa0491540:intron | 40.0% | |
| GTCAATGCAGCTTGGAAAAT+GGG | - | chr3_4:14283320-14283339 | Msa0491540:intron | 40.0% | |
| TGAGACAGGAAATCTCATTG+AGG | - | chr3_4:14283403-14283422 | Msa0491540:intron | 40.0% | |
| AGGCTACAAAATGTTGAGAG+AGG | - | chr3_4:14283423-14283442 | Msa0491540:intron | 40.0% | |
| GTGAAAACTGAAACTGAGAC+AGG | + | chr3_4:14283574-14283593 | None:intergenic | 40.0% | |
| GGCTCATGCCTAATTTCAAG+TGG | - | chr3_4:14277926-14277945 | Msa0491540:three_prime_UTR | 45.0% | |
| TGGGGAGGAAGAAAGAATGA+TGG | + | chr3_4:14278311-14278330 | None:intergenic | 45.0% | |
| TGTCTGTGTCCCTACTTCAT+AGG | + | chr3_4:14278455-14278474 | None:intergenic | 45.0% | |
| ATGAAGTAGGGACACAGACA+CGG | - | chr3_4:14278455-14278474 | Msa0491540:intron | 45.0% | |
| ! | TATTATCCGTGTCGGCATGT+CGG | + | chr3_4:14278502-14278521 | None:intergenic | 45.0% |
| ! | CATAGGTGTTGTGTCGTTGT+CGG | - | chr3_4:14278552-14278571 | Msa0491540:intron | 45.0% |
| GCACAAACACTCTTCGGATT+AGG | + | chr3_4:14278614-14278633 | None:intergenic | 45.0% | |
| ATATGAGACACCAACACAGG+TGG | - | chr3_4:14278655-14278674 | Msa0491540:intron | 45.0% | |
| AACCAAAACAAGGAGGAGGA+GGG | + | chr3_4:14278803-14278822 | None:intergenic | 45.0% | |
| TAACCAAAACAAGGAGGAGG+AGG | + | chr3_4:14278804-14278823 | None:intergenic | 45.0% | |
| GCAACATCTCTTCTCAACCA+TGG | + | chr3_4:14278849-14278868 | None:intergenic | 45.0% | |
| TACGACACGAACACTGACAT+GGG | + | chr3_4:14279054-14279073 | None:intergenic | 45.0% | |
| ATACGACACGAACACTGACA+TGG | + | chr3_4:14279055-14279074 | None:intergenic | 45.0% | |
| TAGTCACTACCATATGGTGC+GGG | + | chr3_4:14279252-14279271 | None:intergenic | 45.0% | |
| ATCACTTCCCAACCTTCTCA+AGG | - | chr3_4:14279348-14279367 | Msa0491540:intron | 45.0% | |
| !! | TGAAGCACTGATACAGACAC+TGG | - | chr3_4:14279566-14279585 | Msa0491540:intron | 45.0% |
| ACAGTGCTACATACAAAGGG+AGG | - | chr3_4:14279696-14279715 | Msa0491540:CDS | 45.0% | |
| CTCAAAGTCAAAGAGAGCGA+TGG | - | chr3_4:14280083-14280102 | Msa0491540:CDS | 45.0% | |
| AGAGAGCGATGGATGTTATC+TGG | - | chr3_4:14280094-14280113 | Msa0491540:CDS | 45.0% | |
| CTTGTGAGACCGGATAATGT+TGG | + | chr3_4:14280156-14280175 | None:intergenic | 45.0% | |
| TCTGCTTACTTCCGATCACT+AGG | - | chr3_4:14280236-14280255 | Msa0491540:intron | 45.0% | |
| TTTCCTGTGGACCTAGTGAT+CGG | + | chr3_4:14280250-14280269 | None:intergenic | 45.0% | |
| ACAATCTGATGCGTCAAGCA+GGG | - | chr3_4:14280276-14280295 | Msa0491540:CDS | 45.0% | |
| GTGGATCATCAGAGCCAAAA+TGG | - | chr3_4:14280318-14280337 | Msa0491540:intron | 45.0% | |
| ATCCAAACAGTCCCTTAGTG+TGG | - | chr3_4:14280864-14280883 | Msa0491540:intron | 45.0% | |
| AACCACACTAAGGGACTGTT+TGG | + | chr3_4:14280869-14280888 | None:intergenic | 45.0% | |
| !!! | AGCGCGTTGTTTTGAACATC+AGG | - | chr3_4:14281081-14281100 | Msa0491540:intron | 45.0% |
| GATTCATTGGTCAACTTGGG+TGG | - | chr3_4:14281325-14281344 | Msa0491540:CDS | 45.0% | |
| CGCTCCTCAATGGAAGAATT+CGG | + | chr3_4:14281412-14281431 | None:intergenic | 45.0% | |
| ! | AAAATCAGAGCGCTCCTCAA+TGG | + | chr3_4:14281422-14281441 | None:intergenic | 45.0% |
| GAAGTTGTTCTTGCATGGGA+TGG | + | chr3_4:14281630-14281649 | None:intergenic | 45.0% | |
| TTGTGGAGGATTGTAGCTTG+AGG | + | chr3_4:14281670-14281689 | None:intergenic | 45.0% | |
| GCTATCGTTTCGAAACAGCT+GGG | - | chr3_4:14281734-14281753 | Msa0491540:intron | 45.0% | |
| CTATCGTTTCGAAACAGCTG+GGG | - | chr3_4:14281735-14281754 | Msa0491540:intron | 45.0% | |
| TAAGAGGAGGGATGTTCTCA+GGG | + | chr3_4:14282716-14282735 | None:intergenic | 45.0% | |
| TTAAGAGGAGGGATGTTCTC+AGG | + | chr3_4:14282717-14282736 | None:intergenic | 45.0% | |
| CTTGGAAAATGGGTAGCAAG+TGG | - | chr3_4:14283330-14283349 | Msa0491540:intron | 45.0% | |
| TGAAGAAGGGAAAGTGAGAC+AGG | - | chr3_4:14283389-14283408 | Msa0491540:intron | 45.0% | |
| !!! | CTATTTTTTAAAATTATTAT+CGG | - | chr3_4:14278694-14278713 | Msa0491540:intron | 5.0% |
| ! | TGTTGTGTCGTTGTCGGTGT+CGG | - | chr3_4:14278558-14278577 | Msa0491540:intron | 50.0% |
| ACCAAAACAAGGAGGAGGAG+GGG | + | chr3_4:14278802-14278821 | None:intergenic | 50.0% | |
| ACACGGATACTCCTCGGATT+AGG | - | chr3_4:14278915-14278934 | Msa0491540:CDS | 50.0% | |
| ACTGAGACACTCCTAATCCG+AGG | + | chr3_4:14278929-14278948 | None:intergenic | 50.0% | |
| GTCAGTGTTCGTGTCGTATC+CGG | - | chr3_4:14279056-14279075 | Msa0491540:intron | 50.0% | |
| ATGAACCACGGATACGGACA+TGG | + | chr3_4:14279085-14279104 | None:intergenic | 50.0% | |
| AACAATAGCCCCGCACCATA+TGG | - | chr3_4:14279240-14279259 | Msa0491540:intron | 50.0% | |
| AGTCACTACCATATGGTGCG+GGG | + | chr3_4:14279251-14279270 | None:intergenic | 50.0% | |
| GATCACTAGGTCCACAGGAA+AGG | - | chr3_4:14280249-14280268 | Msa0491540:intron | 50.0% | |
| GACAATCTGATGCGTCAAGC+AGG | - | chr3_4:14280275-14280294 | Msa0491540:CDS | 50.0% | |
| GGCTATCGTTTCGAAACAGC+TGG | - | chr3_4:14281733-14281752 | Msa0491540:intron | 50.0% | |
| AAAACTCGGTATCCGGCTCA+AGG | - | chr3_4:14282031-14282050 | Msa0491540:intron | 50.0% | |
| GAATTAGTCGGTCCTTGAGC+CGG | + | chr3_4:14282046-14282065 | None:intergenic | 50.0% | |
| CCAATCTGACTGTCCTCTAG+CGG | - | chr3_4:14282072-14282091 | Msa0491540:intron | 50.0% | |
| CAATCTGACTGTCCTCTAGC+GGG | - | chr3_4:14282073-14282092 | Msa0491540:intron | 50.0% | |
| AATCTGACTGTCCTCTAGCG+GGG | - | chr3_4:14282074-14282093 | Msa0491540:intron | 50.0% | |
| CATCCTTTCTCTTGGTCACC+AGG | - | chr3_4:14282523-14282542 | Msa0491540:intron | 50.0% | |
| TCACCTGGTGACCAAGAGAA+AGG | + | chr3_4:14282529-14282548 | None:intergenic | 50.0% | |
| AGAGCATGGTCTTCATCCTC+TGG | - | chr3_4:14283143-14283162 | Msa0491540:intron | 50.0% | |
| TTCCGATGTCAGACACGCGT+CGG | + | chr3_4:14278587-14278606 | None:intergenic | 55.0% | |
| !! | TCCCCTCCTCCTCCTTGTTT+TGG | - | chr3_4:14278798-14278817 | Msa0491540:intron | 55.0% |
| ACGGATACGGACATGGACAC+CGG | + | chr3_4:14279078-14279097 | None:intergenic | 55.0% | |
| CTTCCGATCACTAGGTCCAC+AGG | - | chr3_4:14280244-14280263 | Msa0491540:intron | 55.0% | |
| GCTTGAGGAACTGCTCTGAC+TGG | + | chr3_4:14281655-14281674 | None:intergenic | 55.0% | |
| CCGCTAGAGGACAGTCAGAT+TGG | + | chr3_4:14282075-14282094 | None:intergenic | 55.0% | |
| ATCTGACTGTCCTCTAGCGG+GGG | - | chr3_4:14282075-14282094 | Msa0491540:intron | 55.0% | |
| AGGGACACAGACACGGACAC+CGG | - | chr3_4:14278462-14278481 | Msa0491540:intron | 60.0% | |
| CACCGACGCGTGTCTGACAT+CGG | - | chr3_4:14278582-14278601 | Msa0491540:intron | 60.0% | |
| GAGTCGGACACGACACGTGT+TGG | + | chr3_4:14278954-14278973 | None:intergenic | 60.0% | |
| GGTGTCCATGTCCGTATCCG+TGG | - | chr3_4:14279077-14279096 | Msa0491540:intron | 60.0% | |
| GGGGCCCCACTTAAATCCAG+AGG | - | chr3_4:14282094-14282113 | Msa0491540:intron | 60.0% | |
| CGGACACCGACATGCCGACA+CGG | - | chr3_4:14278493-14278512 | Msa0491540:intron | 65.0% | |
| TTAAGTGGGGCCCCCGCTAG+AGG | + | chr3_4:14282088-14282107 | None:intergenic | 65.0% | |
| CACGGACACCGGACACGACG+CGG | - | chr3_4:14278473-14278492 | Msa0491540:intron | 70.0% | |
| ! | GTCGGTGTCCGCGTCGTGTC+CGG | + | chr3_4:14278484-14278503 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 14277708 | 14283727 | 14277708 | ID=Msa0491540;Name=Msa0491540 |
| chr3_4 | mRNA | 14277708 | 14283727 | 14277708 | ID=Msa0491540-mRNA-1;Parent=Msa0491540;Name=Msa0491540-mRNA-1;_AED=0.23;_eAED=0.23;_QI=247|1|1|1|0.8|0.72|11|239|397 |
| chr3_4 | exon | 14277708 | 14278228 | 14277708 | ID=Msa0491540-mRNA-1:exon:4211;Parent=Msa0491540-mRNA-1 |
| chr3_4 | exon | 14278695 | 14278790 | 14278695 | ID=Msa0491540-mRNA-1:exon:4210;Parent=Msa0491540-mRNA-1 |
| chr3_4 | exon | 14278891 | 14279007 | 14278891 | ID=Msa0491540-mRNA-1:exon:4209;Parent=Msa0491540-mRNA-1 |
| chr3_4 | exon | 14279632 | 14279869 | 14279632 | ID=Msa0491540-mRNA-1:exon:4208;Parent=Msa0491540-mRNA-1 |
| chr3_4 | exon | 14279989 | 14280152 | 14279989 | ID=Msa0491540-mRNA-1:exon:4207;Parent=Msa0491540-mRNA-1 |
| chr3_4 | exon | 14280257 | 14280332 | 14280257 | ID=Msa0491540-mRNA-1:exon:4206;Parent=Msa0491540-mRNA-1 |
| chr3_4 | exon | 14281093 | 14281177 | 14281093 | ID=Msa0491540-mRNA-1:exon:4205;Parent=Msa0491540-mRNA-1 |
| chr3_4 | exon | 14281320 | 14281409 | 14281320 | ID=Msa0491540-mRNA-1:exon:4204;Parent=Msa0491540-mRNA-1 |
| chr3_4 | exon | 14283150 | 14283272 | 14283150 | ID=Msa0491540-mRNA-1:exon:4203;Parent=Msa0491540-mRNA-1 |
| chr3_4 | exon | 14283466 | 14283525 | 14283466 | ID=Msa0491540-mRNA-1:exon:4202;Parent=Msa0491540-mRNA-1 |
| chr3_4 | exon | 14283618 | 14283727 | 14283618 | ID=Msa0491540-mRNA-1:exon:4201;Parent=Msa0491540-mRNA-1 |
| chr3_4 | five_prime_UTR | 14283618 | 14283727 | 14283618 | ID=Msa0491540-mRNA-1:five_prime_utr;Parent=Msa0491540-mRNA-1 |
| chr3_4 | five_prime_UTR | 14283466 | 14283525 | 14283466 | ID=Msa0491540-mRNA-1:five_prime_utr;Parent=Msa0491540-mRNA-1 |
| chr3_4 | five_prime_UTR | 14283196 | 14283272 | 14283196 | ID=Msa0491540-mRNA-1:five_prime_utr;Parent=Msa0491540-mRNA-1 |
| chr3_4 | CDS | 14283150 | 14283195 | 14283150 | ID=Msa0491540-mRNA-1:cds;Parent=Msa0491540-mRNA-1 |
| chr3_4 | CDS | 14281320 | 14281409 | 14281320 | ID=Msa0491540-mRNA-1:cds;Parent=Msa0491540-mRNA-1 |
| chr3_4 | CDS | 14281093 | 14281177 | 14281093 | ID=Msa0491540-mRNA-1:cds;Parent=Msa0491540-mRNA-1 |
| chr3_4 | CDS | 14280257 | 14280332 | 14280257 | ID=Msa0491540-mRNA-1:cds;Parent=Msa0491540-mRNA-1 |
| chr3_4 | CDS | 14279989 | 14280152 | 14279989 | ID=Msa0491540-mRNA-1:cds;Parent=Msa0491540-mRNA-1 |
| chr3_4 | CDS | 14279632 | 14279869 | 14279632 | ID=Msa0491540-mRNA-1:cds;Parent=Msa0491540-mRNA-1 |
| chr3_4 | CDS | 14278891 | 14279007 | 14278891 | ID=Msa0491540-mRNA-1:cds;Parent=Msa0491540-mRNA-1 |
| chr3_4 | CDS | 14278695 | 14278790 | 14278695 | ID=Msa0491540-mRNA-1:cds;Parent=Msa0491540-mRNA-1 |
| chr3_4 | CDS | 14277947 | 14278228 | 14277947 | ID=Msa0491540-mRNA-1:cds;Parent=Msa0491540-mRNA-1 |
| chr3_4 | three_prime_UTR | 14277708 | 14277946 | 14277708 | ID=Msa0491540-mRNA-1:three_prime_utr;Parent=Msa0491540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
