AlfalfaGEDB | Msa0236070

M. sativa cultivar zhongmu-4 / Msa0236070

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF12796.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0236070	XP_013462623.1	93.622	439	21	2	1	432	1	439	0.0	843

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0236070	sp\|F4IS56\|ILK1_ARATH	46.387	429	209	4	8	415	43	471	6.57e-125	374

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0236070	A0A072VEQ0	93.622	439	21	2	1	432	1	439	0.0	843

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa0236070	0.803766	2.980257e-49	-8.615850e-47
Msa0003630	Msa0236070	0.829544	4.849854e-55	-8.615850e-47
Msa0007990	Msa0236070	0.815446	9.207177e-52	-8.615850e-47
Msa0008220	Msa0236070	0.838926	2.151308e-57	-8.615850e-47
Msa0010770	Msa0236070	0.825154	5.470911e-54	-8.615850e-47
Msa0012710	Msa0236070	0.862079	6.532770e-64	-8.615850e-47
Msa0015460	Msa0236070	0.810248	1.266551e-50	-8.615850e-47
Msa0017320	Msa0236070	0.851079	1.120742e-60	-8.615850e-47
Msa0031180	Msa0236070	0.809383	1.944576e-50	-8.615850e-47
Msa0033880	Msa0236070	0.813976	1.948635e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0236070	MtrunA17_Chr2g0284901	93.622	439	21	2	1	432	1	439	0.0	843
Msa0236070	MtrunA17_Chr5g0443471	62.552	478	136	6	1	446	1	467	0.0	572
Msa0236070	MtrunA17_Chr8g0380551	46.404	431	212	4	4	415	69	499	3.92e-125	372
Msa0236070	MtrunA17_Chr4g0042731	42.424	396	206	7	42	416	22	416	3.60e-100	306
Msa0236070	MtrunA17_Chr1g0211611	36.462	277	151	8	146	409	294	558	4.88e-47	171
Msa0236070	MtrunA17_Chr5g0406251	34.483	290	165	8	146	422	288	565	6.96e-46	167
Msa0236070	MtrunA17_Chr2g0294351	37.687	268	155	8	145	404	458	721	4.03e-44	164
Msa0236070	MtrunA17_Chr1g0171451	37.638	271	154	7	142	404	408	671	1.28e-42	159
Msa0236070	MtrunA17_Chr3g0132791	37.647	255	142	7	164	407	665	913	2.50e-41	157
Msa0236070	MtrunA17_Chr5g0427651	33.443	305	187	7	111	404	604	903	2.66e-41	157

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0236070	AT4G18950.1	66.589	431	131	3	8	426	9	438	0.0	591
Msa0236070	AT4G18950.2	66.042	427	128	4	8	422	9	430	0.0	575
Msa0236070	AT3G58760.3	61.194	469	158	5	1	448	66	531	0.0	556
Msa0236070	AT3G58760.5	61.194	469	158	5	1	448	66	531	0.0	556
Msa0236070	AT3G58760.1	61.194	469	158	5	1	448	3	468	0.0	556
Msa0236070	AT3G58760.6	66.944	360	105	3	1	346	3	362	2.42e-171	485
Msa0236070	AT3G58760.2	66.944	360	105	3	1	346	66	425	2.15e-170	486
Msa0236070	AT3G58760.4	66.944	360	105	3	1	346	66	425	2.15e-170	486
Msa0236070	AT2G43850.3	46.387	429	209	4	8	415	43	471	6.61e-126	374
Msa0236070	AT2G43850.1	46.387	429	209	4	8	415	43	471	6.68e-126	374

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Find 100 sgRNAs with CRISPR-Local

Find 384 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCACAATCATGAACTT+GGG	0.564897	2_2:-8988878	None:intergenic
AAACCTCAGGAGCCACATAG+CGG	0.724011	2_2:-8986284	None:intergenic
AAGCTAACAGTAATATATTG+CGG	0.591871	2_2:+8985998	Msa0236070:intron
AATATATTGCGGGATGATTC+CGG	0.271441	2_2:+8986009	Msa0236070:CDS
AATCCAACAAGGTTCAAGCT+AGG	0.572761	2_2:+8982534	Msa0236070:CDS
ACAGGTTGATTGAAGAGTGC+TGG	0.486534	2_2:+8988278	Msa0236070:CDS
ACCTAAAAGTTGCAGACTTT+GGG	0.219191	2_2:+8986034	Msa0236070:CDS
ACCTGCAGGTTAGACCATTG+AGG	0.664425	2_2:+8988645	Msa0236070:intron
ACTTGATTTCACCAACAGTG+TGG	0.668121	2_2:+8984070	Msa0236070:CDS
AGAAGAATATGACACTAAAG+TGG	0.511875	2_2:+8986314	Msa0236070:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGTTGATCCTAAAGATCAA+TGG	+	chr2_2:8982808-8982827	Msa0236070:CDS	30.0%
TGTTGATCCTAAAGATCAAT+GGG	+	chr2_2:8982809-8982828	Msa0236070:CDS	30.0%
GACTAATTGGTTAAGATTTG+TGG	+	chr2_2:8982895-8982914	Msa0236070:intron	30.0%
GTCATTAGTGTAAGATAGAT+TGG	+	chr2_2:8982949-8982968	Msa0236070:intron	30.0%
AAGACTCTGAATTATGAGTA+TGG	+	chr2_2:8983304-8983323	Msa0236070:intron	30.0%
GGATATAGAATAAAGGGAAT+TGG	+	chr2_2:8983479-8983498	Msa0236070:intron	30.0%
TCATGAATACAATGATAGAG+AGG	+	chr2_2:8983575-8983594	Msa0236070:intron	30.0%
CATGAATACAATGATAGAGA+GGG	+	chr2_2:8983576-8983595	Msa0236070:intron	30.0%
ATGAATACAATGATAGAGAG+GGG	+	chr2_2:8983577-8983596	Msa0236070:intron	30.0%
TAAAATATAGCATCTGCAAG+GGG	-	chr2_2:8983833-8983852	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	8982325	8989087	8982325	ID=Msa0236070;Name=Msa0236070
chr2_2	mRNA	8982325	8989087	8982325	ID=Msa0236070-mRNA-1;Parent=Msa0236070;Name=Msa0236070-mRNA-1;_AED=0.14;_eAED=0.14;_QI=197\|0.90\|0.83\|1\|0.90\|0.91\|12\|327\|450
chr2_2	exon	8982325	8982839	8982325	ID=Msa0236070-mRNA-1:exon:3839;Parent=Msa0236070-mRNA-1
chr2_2	exon	8983830	8983904	8983830	ID=Msa0236070-mRNA-1:exon:3840;Parent=Msa0236070-mRNA-1
chr2_2	exon	8984008	8984103	8984008	ID=Msa0236070-mRNA-1:exon:3841;Parent=Msa0236070-mRNA-1
chr2_2	exon	8984591	8984676	8984591	ID=Msa0236070-mRNA-1:exon:3842;Parent=Msa0236070-mRNA-1
chr2_2	exon	8984762	8984882	8984762	ID=Msa0236070-mRNA-1:exon:3843;Parent=Msa0236070-mRNA-1
chr2_2	exon	8984992	8985071	8984992	ID=Msa0236070-mRNA-1:exon:3844;Parent=Msa0236070-mRNA-1
chr2_2	exon	8985824	8985886	8985824	ID=Msa0236070-mRNA-1:exon:3845;Parent=Msa0236070-mRNA-1
chr2_2	exon	8986008	8986114	8986008	ID=Msa0236070-mRNA-1:exon:3846;Parent=Msa0236070-mRNA-1
chr2_2	exon	8986283	8986368	8986283	ID=Msa0236070-mRNA-1:exon:3847;Parent=Msa0236070-mRNA-1
chr2_2	exon	8987190	8987243	8987190	ID=Msa0236070-mRNA-1:exon:3848;Parent=Msa0236070-mRNA-1
chr2_2	exon	8988235	8988393	8988235	ID=Msa0236070-mRNA-1:exon:3849;Parent=Msa0236070-mRNA-1
chr2_2	exon	8988653	8989087	8988653	ID=Msa0236070-mRNA-1:exon:3850;Parent=Msa0236070-mRNA-1
chr2_2	five_prime_UTR	8982325	8982521	8982325	ID=Msa0236070-mRNA-1:five_prime_utr;Parent=Msa0236070-mRNA-1
chr2_2	CDS	8982522	8982839	8982522	ID=Msa0236070-mRNA-1:cds;Parent=Msa0236070-mRNA-1
chr2_2	CDS	8983830	8983904	8983830	ID=Msa0236070-mRNA-1:cds;Parent=Msa0236070-mRNA-1
chr2_2	CDS	8984008	8984103	8984008	ID=Msa0236070-mRNA-1:cds;Parent=Msa0236070-mRNA-1
chr2_2	CDS	8984591	8984676	8984591	ID=Msa0236070-mRNA-1:cds;Parent=Msa0236070-mRNA-1
chr2_2	CDS	8984762	8984882	8984762	ID=Msa0236070-mRNA-1:cds;Parent=Msa0236070-mRNA-1
chr2_2	CDS	8984992	8985071	8984992	ID=Msa0236070-mRNA-1:cds;Parent=Msa0236070-mRNA-1
chr2_2	CDS	8985824	8985886	8985824	ID=Msa0236070-mRNA-1:cds;Parent=Msa0236070-mRNA-1
chr2_2	CDS	8986008	8986114	8986008	ID=Msa0236070-mRNA-1:cds;Parent=Msa0236070-mRNA-1
chr2_2	CDS	8986283	8986368	8986283	ID=Msa0236070-mRNA-1:cds;Parent=Msa0236070-mRNA-1
chr2_2	CDS	8987190	8987243	8987190	ID=Msa0236070-mRNA-1:cds;Parent=Msa0236070-mRNA-1
chr2_2	CDS	8988235	8988393	8988235	ID=Msa0236070-mRNA-1:cds;Parent=Msa0236070-mRNA-1
chr2_2	CDS	8988653	8988760	8988653	ID=Msa0236070-mRNA-1:cds;Parent=Msa0236070-mRNA-1
chr2_2	three_prime_UTR	8988761	8989087	8988761	ID=Msa0236070-mRNA-1:three_prime_utr;Parent=Msa0236070-mRNA-1

Gene Sequence

>Msa0236070

ATGGAATCAAAGAATCCAACAAGGTTCAAGCTAGGAAAACAATCATCATTAGCACCAGAAAGACACCGTGAAGAAGATGAAGTTCATCATGATGGTGCTGCTACTATTGATCCTGGTGTTAGGTTGATGTATTCAGCGAATGAAGGTGATGTTGATGGAATTCGTGAGGTCCTTGAATCAGGTGTTAGTGTTAATTTTAGAGATGTTGATGGAAGGACTGCTCTTCATATTGCTGCTTGTCAAGGGTTGACTCATGTTGTTCAGTTGTTGCTTGAGAAAGGAGCTGATGTTGATCCTAAAGATCAATGGGGGAGCACGCCCCTTGCAGATGCTATATTTTATAAAAACAACGATGTGATCAAACTATTGGAGAATCATGGAGCAAAGCCTCTGATGGCTTCTATGCATGTTAATCATGCCCGTGAAGTCCCCGAATATGAAATCAATCCTAAAGAACTTGATTTCACCAACAGTGTGGAGATAACAAAGGGGACTTTCTGTCTTGCGTTGTGGCGTGGGACTGAGGTTGCAGTAAAAAAGCTCGGGGAGGATGTGAGCAGTGATGAGGAGAAAGTGAAGGCTTTCAGAGACGAGCTGGCTCTGTTTCAGAAGATTCGGCATCCAAATGTAGTGCAGTTTCTTGGTGCTGTGACACAGAGTACTCCAATGATGATTGTGACAGAATATCTTCCCAAGGGAGATCTTCGTGATTTCATGAAAAGAAAAGGAGCTTTGAAACCAAGTACTGCTGTGAGATTTGCACTTGATATTGCTAGGGGTGTGGGTTATTTGCATGAAAATAAACCATCACCTATTATTCATCGTGATCTTGAGCCTTCTAATATATTGCGGGATGATTCCGGGCACCTAAAAGTTGCAGACTTTGGGGTCAGCAAGTTGCTAGCAAATAAAGAAGACAAGCCTCTAACTTGCCAAGAAACTTCTTGCCGCTATGTGGCTCCTGAGGTTTTTAAACAAGAAGAATATGACACTAAAGTGGATGTGTTCTCATTTGCACTAATTCTACAAGAGATGATTGAAGGCTGCCCTCCTTTTTCTGCAAAGCGTGATGATGAGGTTCCGAAGTACATAATTTACATTTTGTCGATCTCTCTAATAATATCTGCTTACAGGTTGATTGAAGAGTGCTGGAATGAGAATCCAGCAAAGAGGCCAACATTCAGGCAAATAATAACAAGACTGGAGTCTATCTACAATACAATTGGTCAAAAAAGGCGTTGGAAGGTTAGACCATTGAGGTGCTTTCAAAATCTTGAAGCTTTGTTGAAGAGAGATCGTTCAAATCTAAGCAGTCGGGGCAGTTCATCTCGCTCAACTTCCAGCCGTACATGA

Protein sequence

>Msa0236070

MESKNPTRFKLGKQSSLAPERHREEDEVHHDGAATIDPGVRLMYSANEGDVDGIREVLESGVSVNFRDVDGRTALHIAACQGLTHVVQLLLEKGADVDPKDQWGSTPLADAIFYKNNDVIKLLENHGAKPLMASMHVNHAREVPEYEINPKELDFTNSVEITKGTFCLALWRGTEVAVKKLGEDVSSDEEKVKAFRDELALFQKIRHPNVVQFLGAVTQSTPMMIVTEYLPKGDLRDFMKRKGALKPSTAVRFALDIARGVGYLHENKPSPIIHRDLEPSNILRDDSGHLKVADFGVSKLLANKEDKPLTCQETSCRYVAPEVFKQEEYDTKVDVFSFALILQEMIEGCPPFSAKRDDEVPKYIIYILSISLIISAYRLIEECWNENPAKRPTFRQIITRLESIYNTIGQKRRWKVRPLRCFQNLEALLKRDRSNLSSRGSSSRSTSSRT*