AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0398160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 145 sgRNAs with CRISPR-Local

Find 55 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGGAAACTTTGTATTTC+AGG 0.106917 3_2:-18699107 Msa0398160:three_prime_UTR
CAAGCCAATTCTTCACATTT+TGG 0.132060 3_2:+18700983 None:intergenic
AAAGCAATTCTTAGGAAATT+TGG 0.147864 3_2:-18700469 Msa0398160:three_prime_UTR
TTGCCAATTGATTCAAGTTT+TGG 0.177124 3_2:+18700142 None:intergenic
GAATCACATTTCTAAGATTA+AGG 0.180425 3_2:-18699585 Msa0398160:three_prime_UTR
CCCTTTAACCATGGATCTTC+TGG 0.227279 3_2:-18700313 Msa0398160:three_prime_UTR
TCAGAATTAGTGTAATTTCT+TGG 0.266474 3_2:+18700775 None:intergenic
CTCTAAACAAACATTCTCTT+TGG 0.267465 3_2:+18703237 None:intergenic
TCACCAATCGGTTTGAATCT+AGG 0.289067 3_2:-18700861 Msa0398160:three_prime_UTR
AAGATCTCCAACTGCATCTT+TGG 0.291600 3_2:-18700725 Msa0398160:three_prime_UTR
GGAGAATGGGTATAATATTC+AGG 0.303333 3_2:-18699153 Msa0398160:three_prime_UTR
GTGGATGAATCTTGCATATA+TGG 0.309397 3_2:-18700703 Msa0398160:three_prime_UTR
CATTTACTGCTATCTTGATT+TGG 0.312483 3_2:-18699627 Msa0398160:three_prime_UTR
GAGATCTTTCTGAGAATTGC+AGG 0.319405 3_2:+18700740 None:intergenic
TGTAAATTCAGAGAGCTATT+AGG 0.319741 3_2:-18699440 Msa0398160:three_prime_UTR
AACAATCAACATAGTGGGTT+TGG 0.319917 3_2:-18700611 Msa0398160:three_prime_UTR
TCCAGAAGATCCATGGTTAA+AGG 0.324955 3_2:+18700312 None:intergenic
TACTTACCAAAGCAATTCTT+AGG 0.338518 3_2:-18700477 Msa0398160:three_prime_UTR
TAAGATCATCTAGTGATTGT+TGG 0.354066 3_2:+18699762 None:intergenic
TAAGGGATTACGCAGCCTTC+TGG 0.356709 3_2:-18699567 Msa0398160:three_prime_UTR
AGAACCAAAATGTGAAGAAT+TGG 0.363090 3_2:-18700987 Msa0398160:three_prime_UTR
CTACTGCTCTATATTTCCTA+AGG 0.363975 3_2:-18699918 Msa0398160:three_prime_UTR
TAAATTAGAGACACTAATAC+TGG 0.368232 3_2:-18699330 Msa0398160:three_prime_UTR
AGACAATGCCAAAGCAGATA+TGG 0.368292 3_2:-18699220 Msa0398160:three_prime_UTR
GCATGATCTTGTCAATGATT+TGG 0.369243 3_2:-18699726 Msa0398160:three_prime_UTR
TACTTGTTGTGGATGATGTC+TGG 0.370343 3_2:-18700372 Msa0398160:three_prime_UTR
TCCTTTCAGCTTTCACCAAT+CGG 0.383017 3_2:-18700873 Msa0398160:three_prime_UTR
GAAGTTTGAACTTAAAGCTT+GGG 0.383242 3_2:-18700530 Msa0398160:three_prime_UTR
GGTCCATGCATCTGACTTAG+AGG 0.387647 3_2:-18703263 Msa0398160:CDS
AAATTTCCTAAGAATTGCTT+TGG 0.390556 3_2:+18700471 None:intergenic
ATCTACCGAGTTAGTTGATC+TGG 0.393094 3_2:-18700239 Msa0398160:three_prime_UTR
TGCTATCTTGATTTGGAAGA+TGG 0.399025 3_2:-18699620 Msa0398160:three_prime_UTR
AACTGACTGCGAACTCCCTA+TGG 0.403881 3_2:-18703317 Msa0398160:CDS
TTTAGACTCCATATCTGCTT+TGG 0.404315 3_2:+18699212 None:intergenic
TACCCAAAACTTGAATCAAT+TGG 0.410346 3_2:-18700145 Msa0398160:three_prime_UTR
AATCACATTTCTAAGATTAA+GGG 0.412359 3_2:-18699584 Msa0398160:three_prime_UTR
TTTCAAAACTAAAATATTTG+CGG 0.412630 3_2:-18699481 Msa0398160:three_prime_UTR
AGACAAAAGTGAAGAAGAGT+TGG 0.413939 3_2:-18699825 Msa0398160:three_prime_UTR
AATTGAAGAACAAAGATTGT+TGG 0.416560 3_2:-18700213 Msa0398160:three_prime_UTR
GAAACTTTGTATTTCAGGAT+TGG 0.418664 3_2:-18699102 Msa0398160:three_prime_UTR
CATAGTGGGTTTGGGTGGGA+TGG 0.419838 3_2:-18700602 Msa0398160:three_prime_UTR
TCTGCCAAGGAAAGACTTAG+AGG 0.420755 3_2:+18703728 None:intergenic
AAAATTTCTTGCAGAGCAAA+AGG 0.423006 3_2:-18700815 Msa0398160:three_prime_UTR
GGTAATCTCAATCGTCTTCA+AGG 0.423766 3_2:-18699125 Msa0398160:three_prime_UTR
TAAAGCTTACAAATTGAGTC+AGG 0.424616 3_2:+18699353 None:intergenic
CATCTTGCAGAGAGCCTCTC+AGG 0.428200 3_2:-18701201 Msa0398160:intron
TAGTGGGTTTGGGTGGGATG+GGG 0.430071 3_2:-18700600 Msa0398160:three_prime_UTR
TTGTTGTGGGAGAGGAGAAT+GGG 0.430685 3_2:-18699166 Msa0398160:three_prime_UTR
CCAGAAGATCCATGGTTAAA+GGG 0.431897 3_2:+18700313 None:intergenic
TGGGTATAATATTCAGGAGT+TGG 0.432713 3_2:-18699147 Msa0398160:three_prime_UTR
CCTTTAGCTGTGAAAACACT+AGG 0.439238 3_2:-18700091 Msa0398160:three_prime_UTR
TTTCAATTAACGATTTAGTC+AGG 0.439878 3_2:+18699381 None:intergenic
GGAAACTGAATGAGGAAAGT+TGG 0.440697 3_2:-18700351 Msa0398160:three_prime_UTR
ACAATCAACATAGTGGGTTT+GGG 0.444803 3_2:-18700610 Msa0398160:three_prime_UTR
GGGATGAATTGATCAAGCTT+TGG 0.451513 3_2:-18699880 Msa0398160:three_prime_UTR
GGGCTAGCCATTGTCACAAT+AGG 0.457677 3_2:+18703100 None:intergenic
GGGTATAATATTCAGGAGTT+GGG 0.459794 3_2:-18699146 Msa0398160:three_prime_UTR
CAATTTGTAAGCAAAACTCT+TGG 0.460307 3_2:+18699690 None:intergenic
ATTGTTGGAGTTTATTTAAG+AGG 0.462722 3_2:-18700198 Msa0398160:three_prime_UTR
ATAGTGGGTTTGGGTGGGAT+GGG 0.462876 3_2:-18700601 Msa0398160:three_prime_UTR
TGCAGAGCAAAAGGATGTGT+TGG 0.464321 3_2:-18700806 Msa0398160:three_prime_UTR
AGAAGTTTGAACTTAAAGCT+TGG 0.466547 3_2:-18700531 Msa0398160:three_prime_UTR
AAAATTCACTCAACGTGAAT+GGG 0.470312 3_2:-18700053 Msa0398160:three_prime_UTR
GAATTCTATCAATCAACTGT+TGG 0.471670 3_2:-18701034 Msa0398160:three_prime_UTR
CAAGAACTTTCTACTTGTTG+TGG 0.471955 3_2:-18700383 Msa0398160:three_prime_UTR
AGAGAGCTATTAGGTCAGAT+AGG 0.473721 3_2:-18699431 Msa0398160:three_prime_UTR
AATCACTCAGCGTTTGAAGA+TGG 0.475061 3_2:+18699189 None:intergenic
AGGTTCCTTATCAGCTAGTA+AGG 0.475179 3_2:+18703288 None:intergenic
TTTGTTGTGGGAGAGGAGAA+TGG 0.475284 3_2:-18699167 Msa0398160:three_prime_UTR
GAAACTGAATGAGGAAAGTT+GGG 0.475471 3_2:-18700350 Msa0398160:three_prime_UTR
GCTTCCTCTAAGTCTTTCCT+TGG 0.476292 3_2:-18703732 Msa0398160:CDS
AATATCATGGCAGAGTTGAT+TGG 0.476818 3_2:-18701165 Msa0398160:three_prime_UTR
GCAGAGCAAAAGGATGTGTT+GGG 0.480265 3_2:-18700805 Msa0398160:three_prime_UTR
AATTTGTAAGCAAAACTCTT+GGG 0.481101 3_2:+18699691 None:intergenic
GACAAAAGTGAAGAAGAGTT+GGG 0.485917 3_2:-18699824 Msa0398160:three_prime_UTR
TGCTGAAAATAGTGAAGACT+TGG 0.486283 3_2:-18700443 Msa0398160:three_prime_UTR
ATCTCCAACTGCATCTTTGG+TGG 0.486444 3_2:-18700722 Msa0398160:three_prime_UTR
CTGTCAAACTTAAAACCCTT+AGG 0.493060 3_2:+18699902 None:intergenic
GATCCTAGATTCAAACCGAT+TGG 0.501662 3_2:+18700858 None:intergenic
GGAGACCTTACTAGCTGATA+AGG 0.503584 3_2:-18703293 Msa0398160:CDS
AGTATCAACAATCAACATAG+TGG 0.504817 3_2:-18700617 Msa0398160:three_prime_UTR
TTACTACTTCCCTTTAACCA+TGG 0.507645 3_2:-18700322 Msa0398160:three_prime_UTR
CTAGCTCTATTAGAAATAGT+AGG 0.507659 3_2:+18703136 None:intergenic
TCAGATTCGAAGGGAGGTAA+TGG 0.508668 3_2:+18699954 None:intergenic
ACTAGCTGATAAGGAACCTC+TGG 0.511662 3_2:-18703284 Msa0398160:CDS
TGACTAAATCGTTAATTGAA+AGG 0.513924 3_2:-18699379 Msa0398160:three_prime_UTR
CTAGATGAGAGGCTAGTAGC+AGG 0.514661 3_2:-18703049 Msa0398160:CDS
CAACTATTTGCTGTCATACA+AGG 0.519149 3_2:-18700653 Msa0398160:three_prime_UTR
TACTGCTCTATATTTCCTAA+GGG 0.520288 3_2:-18699917 Msa0398160:three_prime_UTR
CTTAGGAAATATAGAGCAGT+AGG 0.526593 3_2:+18699919 None:intergenic
GAGGTCTTTGAAATCTATTG+AGG 0.528096 3_2:+18701095 None:intergenic
ACTGACTGCGAACTCCCTAT+GGG 0.543163 3_2:-18703316 Msa0398160:CDS
ATCAAGCTTTGGATGGCAGA+AGG 0.544695 3_2:-18699869 Msa0398160:three_prime_UTR
CATTGTAGACAAGCTGTGCA+AGG 0.556722 3_2:+18700569 None:intergenic
ATATGAAGTAGATCAATTGT+TGG 0.557995 3_2:-18700941 Msa0398160:three_prime_UTR
AAACAGCGCTTCAGATTCGA+AGG 0.565409 3_2:+18699944 None:intergenic
TCTTACTTCCAGAAGATCCA+TGG 0.565912 3_2:+18700305 None:intergenic
ATCATGGCAGAGTTGATTGG+TGG 0.566550 3_2:-18701162 Msa0398160:three_prime_UTR
AGAAATTACACTAATTCTGA+AGG 0.569763 3_2:-18700772 Msa0398160:three_prime_UTR
TGAATTGATCAAGCTTTGGA+TGG 0.575025 3_2:-18699876 Msa0398160:three_prime_UTR
AATCAAAATACTCAGATACA+TGG 0.575839 3_2:+18700506 None:intergenic
ATTTGACTAACATAATATCA+TGG 0.578974 3_2:-18701178 Msa0398160:exon
TCATCCACCAAAGATGCAGT+TGG 0.580536 3_2:+18700718 None:intergenic
ATCAACATAGTGGGTTTGGG+TGG 0.581290 3_2:-18700607 Msa0398160:three_prime_UTR
AATATTGTAGATAAGTGTGG+AGG 0.586316 3_2:-18700118 Msa0398160:three_prime_UTR
ACCGATTGGTGAAAGCTGAA+AGG 0.590967 3_2:+18700872 None:intergenic
TTGCGGATGTTGTCATTCTG+TGG 0.590990 3_2:-18699464 Msa0398160:three_prime_UTR
GTAATCTCAATCGTCTTCAA+GGG 0.593987 3_2:-18699124 Msa0398160:three_prime_UTR
TTTACGTCATCTTAATCTCG+AGG 0.594868 3_2:-18699255 Msa0398160:three_prime_UTR
TCTTGCATATATGGTAGAGA+GGG 0.595995 3_2:-18700694 Msa0398160:three_prime_UTR
GTAGACAAGCTGTGCAAGGG+TGG 0.602184 3_2:+18700573 None:intergenic
CTGGTTGTACGACGAGGCCA+TGG 0.605867 3_2:-18699548 Msa0398160:three_prime_UTR
AGAACTTGAAAGATCTGCCA+AGG 0.606332 3_2:+18703715 None:intergenic
TTTCATCAATAGAGGTAATG+GGG 0.609310 3_2:+18703080 None:intergenic
AAAATTTGAGTCTAGATGAG+AGG 0.611443 3_2:-18703060 Msa0398160:CDS
GAAGGTTTACTGAAATGTTG+CGG 0.613034 3_2:-18699851 Msa0398160:three_prime_UTR
TACTAGAGGCTGACATGTGG+CGG 0.614721 3_2:-18700024 Msa0398160:three_prime_UTR
CTTTAGCTGTGAAAACACTA+GGG 0.616779 3_2:-18700090 Msa0398160:three_prime_UTR
GTATCAACAATCAACATAGT+GGG 0.618338 3_2:-18700616 Msa0398160:three_prime_UTR
AAGTCAGATGCATGGACCAG+AGG 0.619056 3_2:+18703268 None:intergenic
ATCTTGCATATATGGTAGAG+AGG 0.619251 3_2:-18700695 Msa0398160:three_prime_UTR
AGCTTGTCTACAATGACCGC+AGG 0.622673 3_2:-18700561 Msa0398160:three_prime_UTR
TTACGTCATCTTAATCTCGA+GGG 0.623330 3_2:-18699254 Msa0398160:three_prime_UTR
TCAACATAGTGGGTTTGGGT+GGG 0.628639 3_2:-18700606 Msa0398160:three_prime_UTR
ATATTGTAGATAAGTGTGGA+GGG 0.629144 3_2:-18700117 Msa0398160:three_prime_UTR
TTAGAGACACTAATACTGGA+AGG 0.631109 3_2:-18699326 Msa0398160:three_prime_UTR
ATTGTAGACAAGCTGTGCAA+GGG 0.634324 3_2:+18700570 None:intergenic
AAATGTACAACGAAAGAGCA+AGG 0.636482 3_2:-18700905 Msa0398160:three_prime_UTR
GGCCTCGTCGTACAACCAGA+AGG 0.637087 3_2:+18699552 None:intergenic
CAAACTTCTCTTGTATCCTG+CGG 0.640141 3_2:+18700545 None:intergenic
CTGACTGCGAACTCCCTATG+GGG 0.644888 3_2:-18703315 Msa0398160:CDS
AAGCCTCTAAGTCAGATGCA+TGG 0.650053 3_2:+18703260 None:intergenic
TGATGTCTGGAAACTGAATG+AGG 0.650402 3_2:-18700359 Msa0398160:three_prime_UTR
TGATGACAGTAACATTAACT+CGG 0.660243 3_2:-18699993 Msa0398160:three_prime_UTR
AGCGCTTCAGATTCGAAGGG+AGG 0.660727 3_2:+18699948 None:intergenic
TTGTTCCAGATCAACTAACT+CGG 0.666149 3_2:+18700234 None:intergenic
AAGACTTGGATCTACTCCAA+CGG 0.668458 3_2:-18700429 Msa0398160:three_prime_UTR
AGATACTAGAGGCTGACATG+TGG 0.673174 3_2:-18700027 Msa0398160:three_prime_UTR
AGCCTTCTGGTTGTACGACG+AGG 0.685273 3_2:-18699554 Msa0398160:three_prime_UTR
AAATTACCTGAAAATGTGTG+TGG 0.687831 3_2:+18703678 None:intergenic
AACAGCGCTTCAGATTCGAA+GGG 0.699604 3_2:+18699945 None:intergenic
TGACTGCGAACTCCCTATGG+GGG 0.701014 3_2:-18703314 Msa0398160:CDS
TATGTTAGTCAAATCCTGAG+AGG 0.706248 3_2:+18701187 None:intergenic
TGAATGGGAAAAGATACTAG+AGG 0.724518 3_2:-18700038 Msa0398160:three_prime_UTR
GCTTGATCGTCTAAAACACG+AGG 0.728677 3_2:-18700965 Msa0398160:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCAAAACTAAAATATTTG+CGG - chr3_2:18703583-18703602 Msa0398160:intron 15.0%
!!! AATCACATTTCTAAGATTAA+GGG - chr3_2:18703480-18703499 Msa0398160:intron 20.0%
!!! CAAGTTTGTAAAATTTTGAA+GGG + chr3_2:18703785-18703804 None:intergenic 20.0%
!!! ACAAGTTTGTAAAATTTTGA+AGG + chr3_2:18703786-18703805 None:intergenic 20.0%
! TGATTGTTGGAAAAATGAAA+TGG + chr3_2:18703292-18703311 None:intergenic 25.0%
! AATTTGTAAGCAAAACTCTT+GGG + chr3_2:18703376-18703395 None:intergenic 25.0%
!!! GAATCACATTTCTAAGATTA+AGG - chr3_2:18703479-18703498 Msa0398160:intron 25.0%
! TTTCAATTAACGATTTAGTC+AGG + chr3_2:18703686-18703705 None:intergenic 25.0%
! TGACTAAATCGTTAATTGAA+AGG - chr3_2:18703685-18703704 Msa0398160:CDS 25.0%
! TAAATTAGAGACACTAATAC+TGG - chr3_2:18703734-18703753 Msa0398160:CDS 25.0%
TACTGCTCTATATTTCCTAA+GGG - chr3_2:18703147-18703166 Msa0398160:CDS 30.0%
!!! TAAGGGTTTTAAGTTTGACA+GGG - chr3_2:18703164-18703183 Msa0398160:intron 30.0%
TAAGATCATCTAGTGATTGT+TGG + chr3_2:18703305-18703324 None:intergenic 30.0%
CAATTTGTAAGCAAAACTCT+TGG + chr3_2:18703377-18703396 None:intergenic 30.0%
! AGAGTTTTGCTTACAAATTG+AGG - chr3_2:18703377-18703396 Msa0398160:intron 30.0%
! GAGTTTTGCTTACAAATTGA+GGG - chr3_2:18703378-18703397 Msa0398160:intron 30.0%
CATTTACTGCTATCTTGATT+TGG - chr3_2:18703437-18703456 Msa0398160:intron 30.0%
!!! TCATGAAGCATTTTTTACCA+TGG + chr3_2:18703536-18703555 None:intergenic 30.0%
TGTAAATTCAGAGAGCTATT+AGG - chr3_2:18703624-18703643 Msa0398160:intron 30.0%
TAAAGCTTACAAATTGAGTC+AGG + chr3_2:18703714-18703733 None:intergenic 30.0%
GAAACTTTGTATTTCAGGAT+TGG - chr3_2:18703962-18703981 Msa0398160:intron 30.0%
CTACTGCTCTATATTTCCTA+AGG - chr3_2:18703146-18703165 Msa0398160:CDS 35.0%
CTGTCAAACTTAAAACCCTT+AGG + chr3_2:18703165-18703184 None:intergenic 35.0%
!!! CTAAGGGTTTTAAGTTTGAC+AGG - chr3_2:18703163-18703182 Msa0398160:intron 35.0%
!! TGAATTGATCAAGCTTTGGA+TGG - chr3_2:18703188-18703207 Msa0398160:intron 35.0%
GAAGGTTTACTGAAATGTTG+CGG - chr3_2:18703213-18703232 Msa0398160:intron 35.0%
AGACAAAAGTGAAGAAGAGT+TGG - chr3_2:18703239-18703258 Msa0398160:intron 35.0%
GACAAAAGTGAAGAAGAGTT+GGG - chr3_2:18703240-18703259 Msa0398160:intron 35.0%
GCATGATCTTGTCAATGATT+TGG - chr3_2:18703338-18703357 Msa0398160:intron 35.0%
!! TGCTATCTTGATTTGGAAGA+TGG - chr3_2:18703444-18703463 Msa0398160:intron 35.0%
TTAGAGACACTAATACTGGA+AGG - chr3_2:18703738-18703757 Msa0398160:CDS 35.0%
TTTACGTCATCTTAATCTCG+AGG - chr3_2:18703809-18703828 Msa0398160:intron 35.0%
TTACGTCATCTTAATCTCGA+GGG - chr3_2:18703810-18703829 Msa0398160:intron 35.0%
TTTAGACTCCATATCTGCTT+TGG + chr3_2:18703855-18703874 None:intergenic 35.0%
GGAGAATGGGTATAATATTC+AGG - chr3_2:18703911-18703930 Msa0398160:intron 35.0%
TGGGTATAATATTCAGGAGT+TGG - chr3_2:18703917-18703936 Msa0398160:intron 35.0%
GGGTATAATATTCAGGAGTT+GGG - chr3_2:18703918-18703937 Msa0398160:intron 35.0%
GTAATCTCAATCGTCTTCAA+GGG - chr3_2:18703940-18703959 Msa0398160:intron 35.0%
CAAGGGAAACTTTGTATTTC+AGG - chr3_2:18703957-18703976 Msa0398160:intron 35.0%
GGGATGAATTGATCAAGCTT+TGG - chr3_2:18703184-18703203 Msa0398160:intron 40.0%
AGAGAGCTATTAGGTCAGAT+AGG - chr3_2:18703633-18703652 Msa0398160:intron 40.0%
AGACAATGCCAAAGCAGATA+TGG - chr3_2:18703844-18703863 Msa0398160:intron 40.0%
AATCACTCAGCGTTTGAAGA+TGG + chr3_2:18703878-18703897 None:intergenic 40.0%
! AACGCTGAGTGATTTTGTTG+TGG - chr3_2:18703884-18703903 Msa0398160:intron 40.0%
!! ACGCTGAGTGATTTTGTTGT+GGG - chr3_2:18703885-18703904 Msa0398160:intron 40.0%
GGTAATCTCAATCGTCTTCA+AGG - chr3_2:18703939-18703958 Msa0398160:intron 40.0%
!! ATCAAGCTTTGGATGGCAGA+AGG - chr3_2:18703195-18703214 Msa0398160:intron 45.0%
TTGCGGATGTTGTCATTCTG+TGG - chr3_2:18703600-18703619 Msa0398160:intron 45.0%
!! GAGTGATTTTGTTGTGGGAG+AGG - chr3_2:18703890-18703909 Msa0398160:intron 45.0%
! TTTGTTGTGGGAGAGGAGAA+TGG - chr3_2:18703897-18703916 Msa0398160:intron 45.0%
TTGTTGTGGGAGAGGAGAAT+GGG - chr3_2:18703898-18703917 Msa0398160:intron 45.0%
TAAGGGATTACGCAGCCTTC+TGG - chr3_2:18703497-18703516 Msa0398160:intron 50.0%
! AGCCTTCTGGTTGTACGACG+AGG - chr3_2:18703510-18703529 Msa0398160:intron 55.0%
GGCCTCGTCGTACAACCAGA+AGG + chr3_2:18703515-18703534 None:intergenic 60.0%
CTGGTTGTACGACGAGGCCA+TGG - chr3_2:18703516-18703535 Msa0398160:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 18699094 18703992 18699094 ID=Msa0398160;Name=Msa0398160
chr3_2 mRNA 18699094 18703992 18699094 ID=Msa0398160-mRNA-1;Parent=Msa0398160;Name=Msa0398160-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.2|0.16|0.83|0.8|0.83|6|2097|145
chr3_2 exon 18699094 18701213 18699094 ID=Msa0398160-mRNA-1:exon:4160;Parent=Msa0398160-mRNA-1
chr3_2 exon 18703008 18703167 18703008 ID=Msa0398160-mRNA-1:exon:4159;Parent=Msa0398160-mRNA-1
chr3_2 exon 18703249 18703350 18703249 ID=Msa0398160-mRNA-1:exon:4158;Parent=Msa0398160-mRNA-1
chr3_2 exon 18703544 18703549 18703544 ID=Msa0398160-mRNA-1:exon:4157;Parent=Msa0398160-mRNA-1
chr3_2 exon 18703685 18703823 18703685 ID=Msa0398160-mRNA-1:exon:4156;Parent=Msa0398160-mRNA-1
chr3_2 exon 18703985 18703992 18703985 ID=Msa0398160-mRNA-1:exon:4155;Parent=Msa0398160-mRNA-1
chr3_2 CDS 18703985 18703992 18703985 ID=Msa0398160-mRNA-1:cds;Parent=Msa0398160-mRNA-1
chr3_2 CDS 18703685 18703823 18703685 ID=Msa0398160-mRNA-1:cds;Parent=Msa0398160-mRNA-1
chr3_2 CDS 18703544 18703549 18703544 ID=Msa0398160-mRNA-1:cds;Parent=Msa0398160-mRNA-1
chr3_2 CDS 18703249 18703350 18703249 ID=Msa0398160-mRNA-1:cds;Parent=Msa0398160-mRNA-1
chr3_2 CDS 18703008 18703167 18703008 ID=Msa0398160-mRNA-1:cds;Parent=Msa0398160-mRNA-1
chr3_2 CDS 18701191 18701213 18701191 ID=Msa0398160-mRNA-1:cds;Parent=Msa0398160-mRNA-1
chr3_2 three_prime_UTR 18699094 18701190 18699094 ID=Msa0398160-mRNA-1:three_prime_utr;Parent=Msa0398160-mRNA-1
Gene Sequence

>Msa0398160

ATGGGAAATTTGTTTGTTCACTTTCAAGTTCTTCACTTTCAACTTCATTTTCTAACTTCTTATTCTTACTATCTCGTGCTTCCTCTAAGTCTTTCCTTGGCAGATCTTTCAAGTTCTTCACTTTCTTTGTTCCACACACATTTTCAGATCTCAAAGTTAATTATAACTGACTGCGAACTCCCTATGGGGGAGACCTTACTAGCTGATAAGGAACCTCTGGTCCATGCATCTGACTTAGAGGCTTCCAAAGAGAATGTTTTTGATCCTACTATTTCTAATAGAGCTAGCTCATCTGTTTTACCTATTGTGACAATGGCTAGCCCCATTACCTCTATTGATGAAAATTTGAGTCTAGATGAGAGGCTAGTAGCAGGAAAGCATGCAACTAATGTACACTCTGAAGCTAGTCCTAAAAAGAGCCTCTCAGGATTTGACTAA
Protein sequence

>Msa0398160

MGNLFVHFQVLHFQLHFLTSYSYYLVLPLSLSLADLSSSSLSLFHTHFQISKLIITDCELPMGETLLADKEPLVHASDLEASKENVFDPTISNRASSSVLPIVTMASPITSIDENLSLDERLVAGKHATNVHSEASPKKSLSGFD*