Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0144790 | Msa0398090 | 0.812979 | 3.227217e-51 | -8.615850e-47 |
| Msa0193460 | Msa0398090 | 0.801646 | 8.162190e-49 | -8.615850e-47 |
| Msa0388220 | Msa0398090 | 0.813979 | 1.945495e-51 | -8.615850e-47 |
| Msa0398090 | Msa0398160 | 0.944147 | 3.324039e-103 | -8.615850e-47 |
| Msa0398090 | Msa0492880 | 0.812510 | 4.088282e-51 | -8.615850e-47 |
| Msa0398090 | Msa0512870 | 0.810978 | 8.810066e-51 | -8.615850e-47 |
| Msa0398090 | Msa0626280 | 0.818454 | 1.943674e-52 | -8.615850e-47 |
| Msa0398090 | Msa0687450 | 0.802712 | 4.926308e-49 | -8.615850e-47 |
| Msa0398090 | Msa0832320 | 0.813081 | 3.066180e-51 | -8.615850e-47 |
| Msa0398090 | Msa1070690 | 0.834446 | 2.983891e-56 | -8.615850e-47 |
| Msa0398090 | Msa1224830 | 0.800156 | 1.645170e-48 | -8.615850e-47 |
| Msa0398090 | Msa1227330 | 0.806163 | 9.401738e-50 | -8.615850e-47 |
| Msa0398090 | Msa1282500 | 0.809682 | 1.677161e-50 | -8.615850e-47 |
| Msa0398090 | Msa1288450 | 0.802239 | 6.165156e-49 | -8.615850e-47 |
| Msa0398090 | Msa1310210 | 0.807059 | 6.082423e-50 | -8.615850e-47 |
| Msa0398090 | Msa1393410 | 0.808089 | 3.675863e-50 | -8.615850e-47 |
| Msa0398090 | Msa1418260 | 0.804973 | 1.670556e-49 | -8.615850e-47 |
| Msa0398090 | Msa1435420 | 0.809075 | 2.263391e-50 | -8.615850e-47 |
| Msa0269520 | Msa0398090 | 0.810005 | 1.429058e-50 | -8.615850e-47 |
| Msa0317740 | Msa0398090 | 0.829731 | 4.369623e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 145 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGGAAACTTTGTATTTC+AGG | 0.106917 | 3_2:-18446256 | Msa0398090:three_prime_UTR |
| CAAGCCAATTCTTCACATTT+TGG | 0.132060 | 3_2:+18448132 | None:intergenic |
| AAAGCAATTCTTAGGAAATT+TGG | 0.147864 | 3_2:-18447618 | Msa0398090:three_prime_UTR |
| TTGCCAATTGATTCAAGTTT+TGG | 0.177124 | 3_2:+18447291 | None:intergenic |
| GAATCACATTTCTAAGATTA+AGG | 0.180425 | 3_2:-18446734 | Msa0398090:three_prime_UTR |
| CCCTTTAACCATGGATCTTC+TGG | 0.227279 | 3_2:-18447462 | Msa0398090:three_prime_UTR |
| TCAGAATTAGTGTAATTTCT+TGG | 0.266474 | 3_2:+18447924 | None:intergenic |
| CTCTAAACAAACATTCTCTT+TGG | 0.267465 | 3_2:+18450386 | None:intergenic |
| TCACCAATCGGTTTGAATCT+AGG | 0.289067 | 3_2:-18448010 | Msa0398090:three_prime_UTR |
| AAGATCTCCAACTGCATCTT+TGG | 0.291600 | 3_2:-18447874 | Msa0398090:three_prime_UTR |
| GGAGAATGGGTATAATATTC+AGG | 0.303333 | 3_2:-18446302 | Msa0398090:three_prime_UTR |
| GTGGATGAATCTTGCATATA+TGG | 0.309397 | 3_2:-18447852 | Msa0398090:three_prime_UTR |
| CATTTACTGCTATCTTGATT+TGG | 0.312483 | 3_2:-18446776 | Msa0398090:three_prime_UTR |
| GAGATCTTTCTGAGAATTGC+AGG | 0.319405 | 3_2:+18447889 | None:intergenic |
| TGTAAATTCAGAGAGCTATT+AGG | 0.319741 | 3_2:-18446589 | Msa0398090:three_prime_UTR |
| AACAATCAACATAGTGGGTT+TGG | 0.319917 | 3_2:-18447760 | Msa0398090:three_prime_UTR |
| TCCAGAAGATCCATGGTTAA+AGG | 0.324955 | 3_2:+18447461 | None:intergenic |
| TACTTACCAAAGCAATTCTT+AGG | 0.338518 | 3_2:-18447626 | Msa0398090:three_prime_UTR |
| TAAGATCATCTAGTGATTGT+TGG | 0.354066 | 3_2:+18446911 | None:intergenic |
| TAAGGGATTACGCAGCCTTC+TGG | 0.356709 | 3_2:-18446716 | Msa0398090:three_prime_UTR |
| AGAACCAAAATGTGAAGAAT+TGG | 0.363090 | 3_2:-18448136 | Msa0398090:three_prime_UTR |
| CTACTGCTCTATATTTCCTA+AGG | 0.363975 | 3_2:-18447067 | Msa0398090:three_prime_UTR |
| TAAATTAGAGACACTAATAC+TGG | 0.368232 | 3_2:-18446479 | Msa0398090:three_prime_UTR |
| AGACAATGCCAAAGCAGATA+TGG | 0.368292 | 3_2:-18446369 | Msa0398090:three_prime_UTR |
| GCATGATCTTGTCAATGATT+TGG | 0.369243 | 3_2:-18446875 | Msa0398090:three_prime_UTR |
| TACTTGTTGTGGATGATGTC+TGG | 0.370343 | 3_2:-18447521 | Msa0398090:three_prime_UTR |
| TCCTTTCAGCTTTCACCAAT+CGG | 0.383017 | 3_2:-18448022 | Msa0398090:three_prime_UTR |
| GAAGTTTGAACTTAAAGCTT+GGG | 0.383242 | 3_2:-18447679 | Msa0398090:three_prime_UTR |
| GGTCCATGCATCTGACTTAG+AGG | 0.387647 | 3_2:-18450412 | Msa0398090:CDS |
| AAATTTCCTAAGAATTGCTT+TGG | 0.390556 | 3_2:+18447620 | None:intergenic |
| ATCTACCGAGTTAGTTGATC+TGG | 0.393094 | 3_2:-18447388 | Msa0398090:three_prime_UTR |
| TGCTATCTTGATTTGGAAGA+TGG | 0.399025 | 3_2:-18446769 | Msa0398090:three_prime_UTR |
| AACTGACTGCGAACTCCCTA+TGG | 0.403881 | 3_2:-18450466 | Msa0398090:CDS |
| TTTAGACTCCATATCTGCTT+TGG | 0.404315 | 3_2:+18446361 | None:intergenic |
| TACCCAAAACTTGAATCAAT+TGG | 0.410346 | 3_2:-18447294 | Msa0398090:three_prime_UTR |
| AATCACATTTCTAAGATTAA+GGG | 0.412359 | 3_2:-18446733 | Msa0398090:three_prime_UTR |
| TTTCAAAACTAAAATATTTG+CGG | 0.412630 | 3_2:-18446630 | Msa0398090:three_prime_UTR |
| AGACAAAAGTGAAGAAGAGT+TGG | 0.413939 | 3_2:-18446974 | Msa0398090:three_prime_UTR |
| AATTGAAGAACAAAGATTGT+TGG | 0.416560 | 3_2:-18447362 | Msa0398090:three_prime_UTR |
| GAAACTTTGTATTTCAGGAT+TGG | 0.418664 | 3_2:-18446251 | Msa0398090:three_prime_UTR |
| CATAGTGGGTTTGGGTGGGA+TGG | 0.419838 | 3_2:-18447751 | Msa0398090:three_prime_UTR |
| TCTGCCAAGGAAAGACTTAG+AGG | 0.420755 | 3_2:+18450877 | None:intergenic |
| AAAATTTCTTGCAGAGCAAA+AGG | 0.423006 | 3_2:-18447964 | Msa0398090:three_prime_UTR |
| GGTAATCTCAATCGTCTTCA+AGG | 0.423766 | 3_2:-18446274 | Msa0398090:three_prime_UTR |
| TAAAGCTTACAAATTGAGTC+AGG | 0.424616 | 3_2:+18446502 | None:intergenic |
| CATCTTGCAGAGAGCCTCTC+AGG | 0.428200 | 3_2:-18448350 | Msa0398090:intron |
| TAGTGGGTTTGGGTGGGATG+GGG | 0.430071 | 3_2:-18447749 | Msa0398090:three_prime_UTR |
| TTGTTGTGGGAGAGGAGAAT+GGG | 0.430685 | 3_2:-18446315 | Msa0398090:three_prime_UTR |
| CCAGAAGATCCATGGTTAAA+GGG | 0.431897 | 3_2:+18447462 | None:intergenic |
| TGGGTATAATATTCAGGAGT+TGG | 0.432713 | 3_2:-18446296 | Msa0398090:three_prime_UTR |
| CCTTTAGCTGTGAAAACACT+AGG | 0.439238 | 3_2:-18447240 | Msa0398090:three_prime_UTR |
| TTTCAATTAACGATTTAGTC+AGG | 0.439878 | 3_2:+18446530 | None:intergenic |
| GGAAACTGAATGAGGAAAGT+TGG | 0.440697 | 3_2:-18447500 | Msa0398090:three_prime_UTR |
| ACAATCAACATAGTGGGTTT+GGG | 0.444803 | 3_2:-18447759 | Msa0398090:three_prime_UTR |
| GGGATGAATTGATCAAGCTT+TGG | 0.451513 | 3_2:-18447029 | Msa0398090:three_prime_UTR |
| GGGCTAGCCATTGTCACAAT+AGG | 0.457677 | 3_2:+18450249 | None:intergenic |
| GGGTATAATATTCAGGAGTT+GGG | 0.459794 | 3_2:-18446295 | Msa0398090:three_prime_UTR |
| CAATTTGTAAGCAAAACTCT+TGG | 0.460307 | 3_2:+18446839 | None:intergenic |
| ATTGTTGGAGTTTATTTAAG+AGG | 0.462722 | 3_2:-18447347 | Msa0398090:three_prime_UTR |
| ATAGTGGGTTTGGGTGGGAT+GGG | 0.462876 | 3_2:-18447750 | Msa0398090:three_prime_UTR |
| TGCAGAGCAAAAGGATGTGT+TGG | 0.464321 | 3_2:-18447955 | Msa0398090:three_prime_UTR |
| AGAAGTTTGAACTTAAAGCT+TGG | 0.466547 | 3_2:-18447680 | Msa0398090:three_prime_UTR |
| AAAATTCACTCAACGTGAAT+GGG | 0.470312 | 3_2:-18447202 | Msa0398090:three_prime_UTR |
| GAATTCTATCAATCAACTGT+TGG | 0.471670 | 3_2:-18448183 | Msa0398090:three_prime_UTR |
| CAAGAACTTTCTACTTGTTG+TGG | 0.471955 | 3_2:-18447532 | Msa0398090:three_prime_UTR |
| AGAGAGCTATTAGGTCAGAT+AGG | 0.473721 | 3_2:-18446580 | Msa0398090:three_prime_UTR |
| AATCACTCAGCGTTTGAAGA+TGG | 0.475061 | 3_2:+18446338 | None:intergenic |
| AGGTTCCTTATCAGCTAGTA+AGG | 0.475179 | 3_2:+18450437 | None:intergenic |
| TTTGTTGTGGGAGAGGAGAA+TGG | 0.475284 | 3_2:-18446316 | Msa0398090:three_prime_UTR |
| GAAACTGAATGAGGAAAGTT+GGG | 0.475471 | 3_2:-18447499 | Msa0398090:three_prime_UTR |
| GCTTCCTCTAAGTCTTTCCT+TGG | 0.476292 | 3_2:-18450881 | Msa0398090:CDS |
| AATATCATGGCAGAGTTGAT+TGG | 0.476818 | 3_2:-18448314 | Msa0398090:three_prime_UTR |
| GCAGAGCAAAAGGATGTGTT+GGG | 0.480265 | 3_2:-18447954 | Msa0398090:three_prime_UTR |
| AATTTGTAAGCAAAACTCTT+GGG | 0.481101 | 3_2:+18446840 | None:intergenic |
| GACAAAAGTGAAGAAGAGTT+GGG | 0.485917 | 3_2:-18446973 | Msa0398090:three_prime_UTR |
| TGCTGAAAATAGTGAAGACT+TGG | 0.486283 | 3_2:-18447592 | Msa0398090:three_prime_UTR |
| ATCTCCAACTGCATCTTTGG+TGG | 0.486444 | 3_2:-18447871 | Msa0398090:three_prime_UTR |
| CTGTCAAACTTAAAACCCTT+AGG | 0.493060 | 3_2:+18447051 | None:intergenic |
| GATCCTAGATTCAAACCGAT+TGG | 0.501662 | 3_2:+18448007 | None:intergenic |
| GGAGACCTTACTAGCTGATA+AGG | 0.503584 | 3_2:-18450442 | Msa0398090:CDS |
| AGTATCAACAATCAACATAG+TGG | 0.504817 | 3_2:-18447766 | Msa0398090:three_prime_UTR |
| TTACTACTTCCCTTTAACCA+TGG | 0.507645 | 3_2:-18447471 | Msa0398090:three_prime_UTR |
| CTAGCTCTATTAGAAATAGT+AGG | 0.507659 | 3_2:+18450285 | None:intergenic |
| TCAGATTCGAAGGGAGGTAA+TGG | 0.508668 | 3_2:+18447103 | None:intergenic |
| ACTAGCTGATAAGGAACCTC+TGG | 0.511662 | 3_2:-18450433 | Msa0398090:CDS |
| TGACTAAATCGTTAATTGAA+AGG | 0.513924 | 3_2:-18446528 | Msa0398090:three_prime_UTR |
| CTAGATGAGAGGCTAGTAGC+AGG | 0.514661 | 3_2:-18450198 | Msa0398090:CDS |
| CAACTATTTGCTGTCATACA+AGG | 0.519149 | 3_2:-18447802 | Msa0398090:three_prime_UTR |
| TACTGCTCTATATTTCCTAA+GGG | 0.520288 | 3_2:-18447066 | Msa0398090:three_prime_UTR |
| CTTAGGAAATATAGAGCAGT+AGG | 0.526593 | 3_2:+18447068 | None:intergenic |
| GAGGTCTTTGAAATCTATTG+AGG | 0.528096 | 3_2:+18448244 | None:intergenic |
| ACTGACTGCGAACTCCCTAT+GGG | 0.543163 | 3_2:-18450465 | Msa0398090:CDS |
| ATCAAGCTTTGGATGGCAGA+AGG | 0.544695 | 3_2:-18447018 | Msa0398090:three_prime_UTR |
| CATTGTAGACAAGCTGTGCA+AGG | 0.556722 | 3_2:+18447718 | None:intergenic |
| ATATGAAGTAGATCAATTGT+TGG | 0.557995 | 3_2:-18448090 | Msa0398090:three_prime_UTR |
| AAACAGCGCTTCAGATTCGA+AGG | 0.565409 | 3_2:+18447093 | None:intergenic |
| TCTTACTTCCAGAAGATCCA+TGG | 0.565912 | 3_2:+18447454 | None:intergenic |
| ATCATGGCAGAGTTGATTGG+TGG | 0.566550 | 3_2:-18448311 | Msa0398090:three_prime_UTR |
| AGAAATTACACTAATTCTGA+AGG | 0.569763 | 3_2:-18447921 | Msa0398090:three_prime_UTR |
| TGAATTGATCAAGCTTTGGA+TGG | 0.575025 | 3_2:-18447025 | Msa0398090:three_prime_UTR |
| AATCAAAATACTCAGATACA+TGG | 0.575839 | 3_2:+18447655 | None:intergenic |
| ATTTGACTAACATAATATCA+TGG | 0.578974 | 3_2:-18448327 | Msa0398090:exon |
| TCATCCACCAAAGATGCAGT+TGG | 0.580536 | 3_2:+18447867 | None:intergenic |
| ATCAACATAGTGGGTTTGGG+TGG | 0.581290 | 3_2:-18447756 | Msa0398090:three_prime_UTR |
| AATATTGTAGATAAGTGTGG+AGG | 0.586316 | 3_2:-18447267 | Msa0398090:three_prime_UTR |
| ACCGATTGGTGAAAGCTGAA+AGG | 0.590967 | 3_2:+18448021 | None:intergenic |
| TTGCGGATGTTGTCATTCTG+TGG | 0.590990 | 3_2:-18446613 | Msa0398090:three_prime_UTR |
| GTAATCTCAATCGTCTTCAA+GGG | 0.593987 | 3_2:-18446273 | Msa0398090:three_prime_UTR |
| TTTACGTCATCTTAATCTCG+AGG | 0.594868 | 3_2:-18446404 | Msa0398090:three_prime_UTR |
| TCTTGCATATATGGTAGAGA+GGG | 0.595995 | 3_2:-18447843 | Msa0398090:three_prime_UTR |
| GTAGACAAGCTGTGCAAGGG+TGG | 0.602184 | 3_2:+18447722 | None:intergenic |
| CTGGTTGTACGACGAGGCCA+TGG | 0.605867 | 3_2:-18446697 | Msa0398090:three_prime_UTR |
| AGAACTTGAAAGATCTGCCA+AGG | 0.606332 | 3_2:+18450864 | None:intergenic |
| TTTCATCAATAGAGGTAATG+GGG | 0.609310 | 3_2:+18450229 | None:intergenic |
| AAAATTTGAGTCTAGATGAG+AGG | 0.611443 | 3_2:-18450209 | Msa0398090:CDS |
| GAAGGTTTACTGAAATGTTG+CGG | 0.613034 | 3_2:-18447000 | Msa0398090:three_prime_UTR |
| TACTAGAGGCTGACATGTGG+CGG | 0.614721 | 3_2:-18447173 | Msa0398090:three_prime_UTR |
| CTTTAGCTGTGAAAACACTA+GGG | 0.616779 | 3_2:-18447239 | Msa0398090:three_prime_UTR |
| GTATCAACAATCAACATAGT+GGG | 0.618338 | 3_2:-18447765 | Msa0398090:three_prime_UTR |
| AAGTCAGATGCATGGACCAG+AGG | 0.619056 | 3_2:+18450417 | None:intergenic |
| ATCTTGCATATATGGTAGAG+AGG | 0.619251 | 3_2:-18447844 | Msa0398090:three_prime_UTR |
| AGCTTGTCTACAATGACCGC+AGG | 0.622673 | 3_2:-18447710 | Msa0398090:three_prime_UTR |
| TTACGTCATCTTAATCTCGA+GGG | 0.623330 | 3_2:-18446403 | Msa0398090:three_prime_UTR |
| TCAACATAGTGGGTTTGGGT+GGG | 0.628639 | 3_2:-18447755 | Msa0398090:three_prime_UTR |
| ATATTGTAGATAAGTGTGGA+GGG | 0.629144 | 3_2:-18447266 | Msa0398090:three_prime_UTR |
| TTAGAGACACTAATACTGGA+AGG | 0.631109 | 3_2:-18446475 | Msa0398090:three_prime_UTR |
| ATTGTAGACAAGCTGTGCAA+GGG | 0.634324 | 3_2:+18447719 | None:intergenic |
| AAATGTACAACGAAAGAGCA+AGG | 0.636482 | 3_2:-18448054 | Msa0398090:three_prime_UTR |
| GGCCTCGTCGTACAACCAGA+AGG | 0.637087 | 3_2:+18446701 | None:intergenic |
| CAAACTTCTCTTGTATCCTG+CGG | 0.640141 | 3_2:+18447694 | None:intergenic |
| CTGACTGCGAACTCCCTATG+GGG | 0.644888 | 3_2:-18450464 | Msa0398090:CDS |
| AAGCCTCTAAGTCAGATGCA+TGG | 0.650053 | 3_2:+18450409 | None:intergenic |
| TGATGTCTGGAAACTGAATG+AGG | 0.650402 | 3_2:-18447508 | Msa0398090:three_prime_UTR |
| TGATGACAGTAACATTAACT+CGG | 0.660243 | 3_2:-18447142 | Msa0398090:three_prime_UTR |
| AGCGCTTCAGATTCGAAGGG+AGG | 0.660727 | 3_2:+18447097 | None:intergenic |
| TTGTTCCAGATCAACTAACT+CGG | 0.666149 | 3_2:+18447383 | None:intergenic |
| AAGACTTGGATCTACTCCAA+CGG | 0.668458 | 3_2:-18447578 | Msa0398090:three_prime_UTR |
| AGATACTAGAGGCTGACATG+TGG | 0.673174 | 3_2:-18447176 | Msa0398090:three_prime_UTR |
| AGCCTTCTGGTTGTACGACG+AGG | 0.685273 | 3_2:-18446703 | Msa0398090:three_prime_UTR |
| AAATTACCTGAAAATGTGTG+TGG | 0.687831 | 3_2:+18450827 | None:intergenic |
| AACAGCGCTTCAGATTCGAA+GGG | 0.699604 | 3_2:+18447094 | None:intergenic |
| TGACTGCGAACTCCCTATGG+GGG | 0.701014 | 3_2:-18450463 | Msa0398090:CDS |
| TATGTTAGTCAAATCCTGAG+AGG | 0.706248 | 3_2:+18448336 | None:intergenic |
| TGAATGGGAAAAGATACTAG+AGG | 0.724518 | 3_2:-18447187 | Msa0398090:three_prime_UTR |
| GCTTGATCGTCTAAAACACG+AGG | 0.728677 | 3_2:-18448114 | Msa0398090:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAGAGGAAATATAAAATA+TGG | + | chr3_2:18446629-18446648 | None:intergenic | 15.0% |
| !!! | AGATTAACTTTTATTAACAA+AGG | + | chr3_2:18446757-18446776 | None:intergenic | 15.0% |
| !! | AATTTGATAAAGTTAATTGT+AGG | - | chr3_2:18447816-18447835 | Msa0398090:three_prime_UTR | 15.0% |
| !! | TATTCCATTTATAAATAACA+AGG | - | chr3_2:18447857-18447876 | Msa0398090:three_prime_UTR | 15.0% |
| !! | ATTCCATTTATAAATAACAA+GGG | - | chr3_2:18447858-18447877 | Msa0398090:three_prime_UTR | 15.0% |
| !!! | TGAGAAAAAATAGATTTTTT+GGG | + | chr3_2:18448012-18448031 | None:intergenic | 15.0% |
| !!! | ATGAGAAAAAATAGATTTTT+TGG | + | chr3_2:18448013-18448032 | None:intergenic | 15.0% |
| !! | AGAAAACTCATTAAAAAATT+TGG | - | chr3_2:18448273-18448292 | Msa0398090:three_prime_UTR | 15.0% |
| !!! | TTTTAAGTATAAAAATCTGA+TGG | - | chr3_2:18448318-18448337 | Msa0398090:three_prime_UTR | 15.0% |
| !! | CTCTGATAAATTAAAAATAA+TGG | + | chr3_2:18448882-18448901 | None:intergenic | 15.0% |
| !! | CAAATACAAAAAATATTAAC+TGG | - | chr3_2:18449807-18449826 | Msa0398090:intron | 15.0% |
| !! | TTTCAAAACTAAAATATTTG+CGG | - | chr3_2:18450732-18450751 | Msa0398090:intron | 15.0% |
| !! | ATATGTTCAATCATACAAAA+AGG | - | chr3_2:18446281-18446300 | Msa0398090:three_prime_UTR | 20.0% |
| !! | ATATGAAATTTGTGTAACAA+CGG | + | chr3_2:18446604-18446623 | None:intergenic | 20.0% |
| !! | AAAATTAGAGAAAGATTTAG+AGG | + | chr3_2:18446644-18446663 | None:intergenic | 20.0% |
| !!! | TTTTTTATACTCTATTTCCT+TGG | - | chr3_2:18446660-18446679 | Msa0398090:three_prime_UTR | 20.0% |
| !!! | TTACCCTTGTTATTTATAAA+TGG | + | chr3_2:18447864-18447883 | None:intergenic | 20.0% |
| !!! | AGAAAAAATAGATTTTTTGG+GGG | + | chr3_2:18448010-18448029 | None:intergenic | 20.0% |
| !!! | GAGAAAAAATAGATTTTTTG+GGG | + | chr3_2:18448011-18448030 | None:intergenic | 20.0% |
| !!! | AAATTAGGTGATTTTAAAGT+CGG | + | chr3_2:18448156-18448175 | None:intergenic | 20.0% |
| !!! | TGATGGAAGTATTTAAAATT+AGG | + | chr3_2:18448171-18448190 | None:intergenic | 20.0% |
| !! | ATTTCTAAGTGCAAAAAAAT+AGG | + | chr3_2:18448223-18448242 | None:intergenic | 20.0% |
| !! | TCTTTACTTGTTTATGAAAA+TGG | + | chr3_2:18448378-18448397 | None:intergenic | 20.0% |
| !!! | TCTAATATATTTTGTACTCT+TGG | + | chr3_2:18448553-18448572 | None:intergenic | 20.0% |
| !! | ATTTGACTAACATAATATCA+TGG | - | chr3_2:18449035-18449054 | Msa0398090:intron | 20.0% |
| !!! | TAATCAACTTTTTATTGAAG+AGG | + | chr3_2:18449140-18449159 | None:intergenic | 20.0% |
| !! | AAAAATATTGTAGATAAGTG+TGG | - | chr3_2:18450092-18450111 | Msa0398090:intron | 20.0% |
| !!! | AATCACATTTCTAAGATTAA+GGG | - | chr3_2:18450629-18450648 | Msa0398090:intron | 20.0% |
| !!! | CAAGTTTGTAAAATTTTGAA+GGG | + | chr3_2:18450934-18450953 | None:intergenic | 20.0% |
| !!! | ACAAGTTTGTAAAATTTTGA+AGG | + | chr3_2:18450935-18450954 | None:intergenic | 20.0% |
| ! | AAGATATCAAAGATGAAGTT+TGG | + | chr3_2:18446356-18446375 | None:intergenic | 25.0% |
| ! | ACATACATACAAGTATAACT+TGG | + | chr3_2:18446809-18446828 | None:intergenic | 25.0% |
| !! | TTTTCATCAATAGAGGTAAT+GGG | + | chr3_2:18447137-18447156 | None:intergenic | 25.0% |
| !! | ATTTTCATCAATAGAGGTAA+TGG | + | chr3_2:18447138-18447157 | None:intergenic | 25.0% |
| !! | ACTCAAATTTTCATCAATAG+AGG | + | chr3_2:18447144-18447163 | None:intergenic | 25.0% |
| !!! | TTCTTAACTTGAACACTTTT+AGG | + | chr3_2:18447224-18447243 | None:intergenic | 25.0% |
| !! | TTCAAGTTAAGAAGAAATTC+TGG | - | chr3_2:18447231-18447250 | Msa0398090:three_prime_UTR | 25.0% |
| ! | TCAAGTTAAGAAGAAATTCT+GGG | - | chr3_2:18447232-18447251 | Msa0398090:three_prime_UTR | 25.0% |
| !! | TGGACATTTTACAAAAGTTT+TGG | - | chr3_2:18447426-18447445 | Msa0398090:three_prime_UTR | 25.0% |
| !! | GGACATTTTACAAAAGTTTT+GGG | - | chr3_2:18447427-18447446 | Msa0398090:three_prime_UTR | 25.0% |
| !! | GACATTTTACAAAAGTTTTG+GGG | - | chr3_2:18447428-18447447 | Msa0398090:three_prime_UTR | 25.0% |
| !!! | ACATTTTACAAAAGTTTTGG+GGG | - | chr3_2:18447429-18447448 | Msa0398090:three_prime_UTR | 25.0% |
| !!! | GTTTTTTATTACACCCTTTT+TGG | + | chr3_2:18447585-18447604 | None:intergenic | 25.0% |
| ! | ATGAAAATAAAATGCAAACC+AGG | + | chr3_2:18447754-18447773 | None:intergenic | 25.0% |
| ! | TCCTACAATGTATATAGAAT+AGG | - | chr3_2:18448080-18448099 | Msa0398090:three_prime_UTR | 25.0% |
| !!! | AATTAGGTGATTTTAAAGTC+GGG | + | chr3_2:18448155-18448174 | None:intergenic | 25.0% |
| !!! | TTTTAAGTGCAAAAAACTGA+TGG | + | chr3_2:18448188-18448207 | None:intergenic | 25.0% |
| ! | TAAGTATAAAAATCTGATGG+AGG | - | chr3_2:18448321-18448340 | Msa0398090:exon | 25.0% |
| ! | TCACTTGAGTCTAATTAATT+TGG | + | chr3_2:18448403-18448422 | None:intergenic | 25.0% |
| !!! | ATTATTTTAGTCCTATCACT+TGG | - | chr3_2:18448497-18448516 | Msa0398090:intron | 25.0% |
| ! | ATATGAAGTAGATCAATTGT+TGG | - | chr3_2:18449272-18449291 | Msa0398090:intron | 25.0% |
| ! | TCAGAATTAGTGTAATTTCT+TGG | + | chr3_2:18449441-18449460 | None:intergenic | 25.0% |
| ! | AGAAATTACACTAATTCTGA+AGG | - | chr3_2:18449441-18449460 | Msa0398090:intron | 25.0% |
| ! | AATCAAAATACTCAGATACA+TGG | + | chr3_2:18449710-18449729 | None:intergenic | 25.0% |
| ! | AAATTTCCTAAGAATTGCTT+TGG | + | chr3_2:18449745-18449764 | None:intergenic | 25.0% |
| ! | AAAGCAATTCTTAGGAAATT+TGG | - | chr3_2:18449744-18449763 | Msa0398090:intron | 25.0% |
| !!! | ATATTTTTTGTATTTGCCGT+TGG | + | chr3_2:18449803-18449822 | None:intergenic | 25.0% |
| ! | AATTGAAGAACAAAGATTGT+TGG | - | chr3_2:18450000-18450019 | Msa0398090:intron | 25.0% |
| ! | ATTGTTGGAGTTTATTTAAG+AGG | - | chr3_2:18450015-18450034 | Msa0398090:intron | 25.0% |
| ! | TGATTGTTGGAAAAATGAAA+TGG | + | chr3_2:18450441-18450460 | None:intergenic | 25.0% |
| ! | AATTTGTAAGCAAAACTCTT+GGG | + | chr3_2:18450525-18450544 | None:intergenic | 25.0% |
| !!! | GAATCACATTTCTAAGATTA+AGG | - | chr3_2:18450628-18450647 | Msa0398090:intron | 25.0% |
| ! | TTTCAATTAACGATTTAGTC+AGG | + | chr3_2:18450835-18450854 | None:intergenic | 25.0% |
| ! | TGACTAAATCGTTAATTGAA+AGG | - | chr3_2:18450834-18450853 | Msa0398090:CDS | 25.0% |
| ! | TAAATTAGAGACACTAATAC+TGG | - | chr3_2:18450883-18450902 | Msa0398090:CDS | 25.0% |
| ATCAAAGATGAAGTTTGGTA+TGG | + | chr3_2:18446351-18446370 | None:intergenic | 30.0% | |
| AAATTACCTGAAAATGTGTG+TGG | + | chr3_2:18446538-18446557 | None:intergenic | 30.0% | |
| CATACAAGTATAACTTGGAT+TGG | + | chr3_2:18446804-18446823 | None:intergenic | 30.0% | |
| CTCTAAACAAACATTCTCTT+TGG | + | chr3_2:18446979-18446998 | None:intergenic | 30.0% | |
| !! | CTAGCTCTATTAGAAATAGT+AGG | + | chr3_2:18447080-18447099 | None:intergenic | 30.0% |
| ! | TGTTTTACCTATTGTGACAA+TGG | - | chr3_2:18447106-18447125 | Msa0398090:three_prime_UTR | 30.0% |
| TTTCATCAATAGAGGTAATG+GGG | + | chr3_2:18447136-18447155 | None:intergenic | 30.0% | |
| AAAATTTGAGTCTAGATGAG+AGG | - | chr3_2:18447153-18447172 | Msa0398090:three_prime_UTR | 30.0% | |
| CAAGTTAAGAAGAAATTCTG+GGG | - | chr3_2:18447233-18447252 | Msa0398090:three_prime_UTR | 30.0% | |
| AAGTTAAGAAGAAATTCTGG+GGG | - | chr3_2:18447234-18447253 | Msa0398090:three_prime_UTR | 30.0% | |
| !!! | CATTTTACAAAAGTTTTGGG+GGG | - | chr3_2:18447430-18447449 | Msa0398090:three_prime_UTR | 30.0% |
| !!! | TTTTTATTTCTAGCTGCTGA+TGG | + | chr3_2:18447494-18447513 | None:intergenic | 30.0% |
| ATACAAACTCGTTCCAAAAA+GGG | - | chr3_2:18447569-18447588 | Msa0398090:three_prime_UTR | 30.0% | |
| ATCCCAAATATTGTGATTAG+AGG | - | chr3_2:18447606-18447625 | Msa0398090:three_prime_UTR | 30.0% | |
| GTCCTCTAATCACAATATTT+GGG | + | chr3_2:18447611-18447630 | None:intergenic | 30.0% | |
| AGTCCTCTAATCACAATATT+TGG | + | chr3_2:18447612-18447631 | None:intergenic | 30.0% | |
| !!! | ACTTTGTTTTCTGTTGCTAA+AGG | - | chr3_2:18447676-18447695 | Msa0398090:three_prime_UTR | 30.0% |
| TGTTTACACATCAGAAAGAA+AGG | + | chr3_2:18447716-18447735 | None:intergenic | 30.0% | |
| TTTCTTTCTGATGTGTAAAC+AGG | - | chr3_2:18447715-18447734 | Msa0398090:three_prime_UTR | 30.0% | |
| TAAAATGCAAACCAGGATTA+AGG | + | chr3_2:18447747-18447766 | None:intergenic | 30.0% | |
| GCCTATTCTATATACATTGT+AGG | + | chr3_2:18448084-18448103 | None:intergenic | 30.0% | |
| GAATAGGCTTCATTACAATT+TGG | - | chr3_2:18448096-18448115 | Msa0398090:three_prime_UTR | 30.0% | |
| TGTGAATCGGTAAAAATAGA+GGG | + | chr3_2:18448123-18448142 | None:intergenic | 30.0% | |
| TTGTGAATCGGTAAAAATAG+AGG | + | chr3_2:18448124-18448143 | None:intergenic | 30.0% | |
| ATTCTGGATGGAATAATGAT+TGG | - | chr3_2:18448468-18448487 | Msa0398090:intron | 30.0% | |
| ACTATCTTTCTATGCATACT+TGG | + | chr3_2:18448954-18448973 | None:intergenic | 30.0% | |
| GAATTCTATCAATCAACTGT+TGG | - | chr3_2:18449179-18449198 | Msa0398090:intron | 30.0% | |
| !!! | AATTCTTCACATTTTGGTTC+TGG | + | chr3_2:18449227-18449246 | None:intergenic | 30.0% |
| AGAACCAAAATGTGAAGAAT+TGG | - | chr3_2:18449226-18449245 | Msa0398090:intron | 30.0% | |
| AAAATTTCTTGCAGAGCAAA+AGG | - | chr3_2:18449398-18449417 | Msa0398090:intron | 30.0% | |
| AGTATCAACAATCAACATAG+TGG | - | chr3_2:18449596-18449615 | Msa0398090:intron | 30.0% | |
| GTATCAACAATCAACATAGT+GGG | - | chr3_2:18449597-18449616 | Msa0398090:intron | 30.0% | |
| AGAAGTTTGAACTTAAAGCT+TGG | - | chr3_2:18449682-18449701 | Msa0398090:intron | 30.0% | |
| GAAGTTTGAACTTAAAGCTT+GGG | - | chr3_2:18449683-18449702 | Msa0398090:intron | 30.0% | |
| TACTTACCAAAGCAATTCTT+AGG | - | chr3_2:18449736-18449755 | Msa0398090:intron | 30.0% | |
| TACCCAAAACTTGAATCAAT+TGG | - | chr3_2:18450068-18450087 | Msa0398090:intron | 30.0% | |
| !! | TGCCAATTGATTCAAGTTTT+GGG | + | chr3_2:18450073-18450092 | None:intergenic | 30.0% |
| !! | TTGCCAATTGATTCAAGTTT+TGG | + | chr3_2:18450074-18450093 | None:intergenic | 30.0% |
| AATATTGTAGATAAGTGTGG+AGG | - | chr3_2:18450095-18450114 | Msa0398090:intron | 30.0% | |
| ATATTGTAGATAAGTGTGGA+GGG | - | chr3_2:18450096-18450115 | Msa0398090:intron | 30.0% | |
| AAAAATTCACTCAACGTGAA+TGG | - | chr3_2:18450159-18450178 | Msa0398090:CDS | 30.0% | |
| AAAATTCACTCAACGTGAAT+GGG | - | chr3_2:18450160-18450179 | Msa0398090:CDS | 30.0% | |
| TGATGACAGTAACATTAACT+CGG | - | chr3_2:18450220-18450239 | Msa0398090:CDS | 30.0% | |
| TACTGCTCTATATTTCCTAA+GGG | - | chr3_2:18450296-18450315 | Msa0398090:CDS | 30.0% | |
| !!! | TAAGGGTTTTAAGTTTGACA+GGG | - | chr3_2:18450313-18450332 | Msa0398090:intron | 30.0% |
| TAAGATCATCTAGTGATTGT+TGG | + | chr3_2:18450454-18450473 | None:intergenic | 30.0% | |
| CAATTTGTAAGCAAAACTCT+TGG | + | chr3_2:18450526-18450545 | None:intergenic | 30.0% | |
| ! | AGAGTTTTGCTTACAAATTG+AGG | - | chr3_2:18450526-18450545 | Msa0398090:intron | 30.0% |
| ! | GAGTTTTGCTTACAAATTGA+GGG | - | chr3_2:18450527-18450546 | Msa0398090:intron | 30.0% |
| CATTTACTGCTATCTTGATT+TGG | - | chr3_2:18450586-18450605 | Msa0398090:intron | 30.0% | |
| !!! | TCATGAAGCATTTTTTACCA+TGG | + | chr3_2:18450685-18450704 | None:intergenic | 30.0% |
| TGTAAATTCAGAGAGCTATT+AGG | - | chr3_2:18450773-18450792 | Msa0398090:intron | 30.0% | |
| TAAAGCTTACAAATTGAGTC+AGG | + | chr3_2:18450863-18450882 | None:intergenic | 30.0% | |
| GAAACTTTGTATTTCAGGAT+TGG | - | chr3_2:18451111-18451130 | Msa0398090:intron | 30.0% | |
| ! | TTTGTTCCACACACATTTTC+AGG | - | chr3_2:18446529-18446548 | Msa0398090:three_prime_UTR | 35.0% |
| TTGTTTGTTCTCACACTTTC+AGG | - | chr3_2:18446722-18446741 | Msa0398090:three_prime_UTR | 35.0% | |
| ! | CAAGTATAACTTGGATTGGA+TGG | + | chr3_2:18446800-18446819 | None:intergenic | 35.0% |
| AACCCTCTTCTTTGGATAAA+AGG | - | chr3_2:18447018-18447037 | Msa0398090:three_prime_UTR | 35.0% | |
| AGTTAAGAAGAAATTCTGGG+GGG | - | chr3_2:18447235-18447254 | Msa0398090:three_prime_UTR | 35.0% | |
| CATACAAACTCGTTCCAAAA+AGG | - | chr3_2:18447568-18447587 | Msa0398090:three_prime_UTR | 35.0% | |
| TACATTGTAGGACAAGCAAT+TGG | + | chr3_2:18448072-18448091 | None:intergenic | 35.0% | |
| ! | CGGGAATCAATTTTGTGAAT+CGG | + | chr3_2:18448136-18448155 | None:intergenic | 35.0% |
| ! | GAGAGTATGAATCATTTCTC+TGG | + | chr3_2:18448678-18448697 | None:intergenic | 35.0% |
| TATGTTAGTCAAATCCTGAG+AGG | + | chr3_2:18449029-18449048 | None:intergenic | 35.0% | |
| ! | AATATCATGGCAGAGTTGAT+TGG | - | chr3_2:18449048-18449067 | Msa0398090:intron | 35.0% |
| !! | GAGGTCTTTGAAATCTATTG+AGG | + | chr3_2:18449121-18449140 | None:intergenic | 35.0% |
| ! | CAAGCCAATTCTTCACATTT+TGG | + | chr3_2:18449233-18449252 | None:intergenic | 35.0% |
| AAATGTACAACGAAAGAGCA+AGG | - | chr3_2:18449308-18449327 | Msa0398090:intron | 35.0% | |
| GTGGATGAATCTTGCATATA+TGG | - | chr3_2:18449510-18449529 | Msa0398090:intron | 35.0% | |
| ATCTTGCATATATGGTAGAG+AGG | - | chr3_2:18449518-18449537 | Msa0398090:intron | 35.0% | |
| TCTTGCATATATGGTAGAGA+GGG | - | chr3_2:18449519-18449538 | Msa0398090:intron | 35.0% | |
| !! | CAACTATTTGCTGTCATACA+AGG | - | chr3_2:18449560-18449579 | Msa0398090:intron | 35.0% |
| !! | AACAATCAACATAGTGGGTT+TGG | - | chr3_2:18449602-18449621 | Msa0398090:intron | 35.0% |
| !! | ACAATCAACATAGTGGGTTT+GGG | - | chr3_2:18449603-18449622 | Msa0398090:intron | 35.0% |
| TGCTGAAAATAGTGAAGACT+TGG | - | chr3_2:18449770-18449789 | Msa0398090:intron | 35.0% | |
| ! | CAAGAACTTTCTACTTGTTG+TGG | - | chr3_2:18449830-18449849 | Msa0398090:intron | 35.0% |
| GAAACTGAATGAGGAAAGTT+GGG | - | chr3_2:18449863-18449882 | Msa0398090:intron | 35.0% | |
| TTACTACTTCCCTTTAACCA+TGG | - | chr3_2:18449891-18449910 | Msa0398090:intron | 35.0% | |
| TTGTTCCAGATCAACTAACT+CGG | + | chr3_2:18449982-18450001 | None:intergenic | 35.0% | |
| !! | TTTAAGAGGCTTGCTTTTCA+CGG | - | chr3_2:18450029-18450048 | Msa0398090:intron | 35.0% |
| CTTTAGCTGTGAAAACACTA+GGG | - | chr3_2:18450123-18450142 | Msa0398090:intron | 35.0% | |
| !!! | GAGTGAATTTTTTACGCAAG+AGG | + | chr3_2:18450151-18450170 | None:intergenic | 35.0% |
| TGAATGGGAAAAGATACTAG+AGG | - | chr3_2:18450175-18450194 | Msa0398090:CDS | 35.0% | |
| CTTAGGAAATATAGAGCAGT+AGG | + | chr3_2:18450297-18450316 | None:intergenic | 35.0% | |
| CTACTGCTCTATATTTCCTA+AGG | - | chr3_2:18450295-18450314 | Msa0398090:CDS | 35.0% | |
| CTGTCAAACTTAAAACCCTT+AGG | + | chr3_2:18450314-18450333 | None:intergenic | 35.0% | |
| !!! | CTAAGGGTTTTAAGTTTGAC+AGG | - | chr3_2:18450312-18450331 | Msa0398090:intron | 35.0% |
| !! | TGAATTGATCAAGCTTTGGA+TGG | - | chr3_2:18450337-18450356 | Msa0398090:intron | 35.0% |
| GAAGGTTTACTGAAATGTTG+CGG | - | chr3_2:18450362-18450381 | Msa0398090:intron | 35.0% | |
| AGACAAAAGTGAAGAAGAGT+TGG | - | chr3_2:18450388-18450407 | Msa0398090:intron | 35.0% | |
| GACAAAAGTGAAGAAGAGTT+GGG | - | chr3_2:18450389-18450408 | Msa0398090:intron | 35.0% | |
| GCATGATCTTGTCAATGATT+TGG | - | chr3_2:18450487-18450506 | Msa0398090:intron | 35.0% | |
| !! | TGCTATCTTGATTTGGAAGA+TGG | - | chr3_2:18450593-18450612 | Msa0398090:intron | 35.0% |
| TTAGAGACACTAATACTGGA+AGG | - | chr3_2:18450887-18450906 | Msa0398090:CDS | 35.0% | |
| TTTACGTCATCTTAATCTCG+AGG | - | chr3_2:18450958-18450977 | Msa0398090:intron | 35.0% | |
| TTACGTCATCTTAATCTCGA+GGG | - | chr3_2:18450959-18450978 | Msa0398090:intron | 35.0% | |
| TTTAGACTCCATATCTGCTT+TGG | + | chr3_2:18451004-18451023 | None:intergenic | 35.0% | |
| GGAGAATGGGTATAATATTC+AGG | - | chr3_2:18451060-18451079 | Msa0398090:intron | 35.0% | |
| TGGGTATAATATTCAGGAGT+TGG | - | chr3_2:18451066-18451085 | Msa0398090:intron | 35.0% | |
| GGGTATAATATTCAGGAGTT+GGG | - | chr3_2:18451067-18451086 | Msa0398090:intron | 35.0% | |
| GTAATCTCAATCGTCTTCAA+GGG | - | chr3_2:18451089-18451108 | Msa0398090:intron | 35.0% | |
| CAAGGGAAACTTTGTATTTC+AGG | - | chr3_2:18451106-18451125 | Msa0398090:intron | 35.0% | |
| TTCTGCTTCCTCTAAGTCTT+TGG | - | chr3_2:18446377-18446396 | Msa0398090:three_prime_UTR | 40.0% | |
| TCTGCTTCCTCTAAGTCTTT+GGG | - | chr3_2:18446378-18446397 | Msa0398090:three_prime_UTR | 40.0% | |
| AAGATCTCCCAAAGACTTAG+AGG | + | chr3_2:18446388-18446407 | None:intergenic | 40.0% | |
| AGAACTTGAAAGATCTGCCA+AGG | + | chr3_2:18446501-18446520 | None:intergenic | 40.0% | |
| ATACAAACTGAGATCTGCCA+AGG | + | chr3_2:18446680-18446699 | None:intergenic | 40.0% | |
| AGGTTCCTTATCAGCTAGTA+AGG | + | chr3_2:18446928-18446947 | None:intergenic | 40.0% | |
| !! | AGAGACAAGTTCTGAGATAG+AGG | - | chr3_2:18446995-18447014 | Msa0398090:three_prime_UTR | 40.0% |
| ! | GGCCTTTTATCCAAAGAAGA+GGG | + | chr3_2:18447023-18447042 | None:intergenic | 40.0% |
| ! | CTACAAGACTGATTCAAGGA+GGG | + | chr3_2:18447044-18447063 | None:intergenic | 40.0% |
| ! | CTTGCTACAAGACTGATTCA+AGG | + | chr3_2:18447048-18447067 | None:intergenic | 40.0% |
| ! | CTTGAATCAGTCTTGTAGCA+AGG | - | chr3_2:18447046-18447065 | Msa0398090:three_prime_UTR | 40.0% |
| TAGTAAGTGGTGATAGGTTG+AGG | + | chr3_2:18447323-18447342 | None:intergenic | 40.0% | |
| ! | TGAAAGAGAGGTGTAGTAAG+TGG | + | chr3_2:18447336-18447355 | None:intergenic | 40.0% |
| !! | ATTTCTAGCTGCTGATGGAT+AGG | + | chr3_2:18447489-18447508 | None:intergenic | 40.0% |
| TTGTGATTAGAGGACTAGAC+AGG | - | chr3_2:18447616-18447635 | Msa0398090:three_prime_UTR | 40.0% | |
| TGTTGCTAAAGGAAAGCCTT+AGG | - | chr3_2:18447687-18447706 | Msa0398090:three_prime_UTR | 40.0% | |
| TCAGAAAGAAAGGAAGCCTA+AGG | + | chr3_2:18447706-18447725 | None:intergenic | 40.0% | |
| TCTGATGTGTAAACAGGTTC+AGG | - | chr3_2:18447721-18447740 | Msa0398090:three_prime_UTR | 40.0% | |
| TGAGAACCTGAGTTTGATTC+TGG | - | chr3_2:18448452-18448471 | Msa0398090:intron | 40.0% | |
| AACCTGAGTTTGATTCTGGA+TGG | - | chr3_2:18448456-18448475 | Msa0398090:intron | 40.0% | |
| TTCCATCCAGAATCAAACTC+AGG | + | chr3_2:18448461-18448480 | None:intergenic | 40.0% | |
| GCAATGTTCAACCAAGTGAT+AGG | + | chr3_2:18448511-18448530 | None:intergenic | 40.0% | |
| TCCTTTCAGCTTTCACCAAT+CGG | - | chr3_2:18449340-18449359 | Msa0398090:intron | 40.0% | |
| !! | TCACCAATCGGTTTGAATCT+AGG | - | chr3_2:18449352-18449371 | Msa0398090:intron | 40.0% |
| GATCCTAGATTCAAACCGAT+TGG | + | chr3_2:18449358-18449377 | None:intergenic | 40.0% | |
| ! | GAGATCTTTCTGAGAATTGC+AGG | + | chr3_2:18449476-18449495 | None:intergenic | 40.0% |
| AAGATCTCCAACTGCATCTT+TGG | - | chr3_2:18449488-18449507 | Msa0398090:intron | 40.0% | |
| ATTGTAGACAAGCTGTGCAA+GGG | + | chr3_2:18449646-18449665 | None:intergenic | 40.0% | |
| CAAACTTCTCTTGTATCCTG+CGG | + | chr3_2:18449671-18449690 | None:intergenic | 40.0% | |
| AAGACTTGGATCTACTCCAA+CGG | - | chr3_2:18449784-18449803 | Msa0398090:intron | 40.0% | |
| !! | TACTTGTTGTGGATGATGTC+TGG | - | chr3_2:18449841-18449860 | Msa0398090:intron | 40.0% |
| TGATGTCTGGAAACTGAATG+AGG | - | chr3_2:18449854-18449873 | Msa0398090:intron | 40.0% | |
| GGAAACTGAATGAGGAAAGT+TGG | - | chr3_2:18449862-18449881 | Msa0398090:intron | 40.0% | |
| CCAGAAGATCCATGGTTAAA+GGG | + | chr3_2:18449903-18449922 | None:intergenic | 40.0% | |
| TCCAGAAGATCCATGGTTAA+AGG | + | chr3_2:18449904-18449923 | None:intergenic | 40.0% | |
| TCTTACTTCCAGAAGATCCA+TGG | + | chr3_2:18449911-18449930 | None:intergenic | 40.0% | |
| ATCTACCGAGTTAGTTGATC+TGG | - | chr3_2:18449974-18449993 | Msa0398090:intron | 40.0% | |
| ! | CCTAGTGTTTTCACAGCTAA+AGG | + | chr3_2:18450125-18450144 | None:intergenic | 40.0% |
| CCTTTAGCTGTGAAAACACT+AGG | - | chr3_2:18450122-18450141 | Msa0398090:intron | 40.0% | |
| GGGATGAATTGATCAAGCTT+TGG | - | chr3_2:18450333-18450352 | Msa0398090:intron | 40.0% | |
| AGAGAGCTATTAGGTCAGAT+AGG | - | chr3_2:18450782-18450801 | Msa0398090:intron | 40.0% | |
| AGACAATGCCAAAGCAGATA+TGG | - | chr3_2:18450993-18451012 | Msa0398090:intron | 40.0% | |
| AATCACTCAGCGTTTGAAGA+TGG | + | chr3_2:18451027-18451046 | None:intergenic | 40.0% | |
| ! | AACGCTGAGTGATTTTGTTG+TGG | - | chr3_2:18451033-18451052 | Msa0398090:intron | 40.0% |
| !! | ACGCTGAGTGATTTTGTTGT+GGG | - | chr3_2:18451034-18451053 | Msa0398090:intron | 40.0% |
| GGTAATCTCAATCGTCTTCA+AGG | - | chr3_2:18451088-18451107 | Msa0398090:intron | 40.0% | |
| ! | GAAAGTGGCATCCTTTTGAG+TGG | - | chr3_2:18446247-18446266 | Msa0398090:three_prime_UTR | 45.0% |
| TACGCGTCTTTCCACTCAAA+AGG | + | chr3_2:18446261-18446280 | None:intergenic | 45.0% | |
| GCTTCCTCTAAGTCTTTCCT+TGG | - | chr3_2:18446481-18446500 | Msa0398090:three_prime_UTR | 45.0% | |
| TCTGCCAAGGAAAGACTTAG+AGG | + | chr3_2:18446488-18446507 | None:intergenic | 45.0% | |
| GGAGACCTTACTAGCTGATA+AGG | - | chr3_2:18446920-18446939 | Msa0398090:three_prime_UTR | 45.0% | |
| ACTAGCTGATAAGGAACCTC+TGG | - | chr3_2:18446929-18446948 | Msa0398090:three_prime_UTR | 45.0% | |
| AAGCCTCTAAGTCAGATGCA+TGG | + | chr3_2:18446956-18446975 | None:intergenic | 45.0% | |
| GATAGAGGAACCCTCTTCTT+TGG | - | chr3_2:18447010-18447029 | Msa0398090:three_prime_UTR | 45.0% | |
| ! | GGGCCTTTTATCCAAAGAAG+AGG | + | chr3_2:18447024-18447043 | None:intergenic | 45.0% |
| ! | GCTACAAGACTGATTCAAGG+AGG | + | chr3_2:18447045-18447064 | None:intergenic | 45.0% |
| TGTCCAAACCAGAAGATGCA+GGG | + | chr3_2:18447277-18447296 | None:intergenic | 45.0% | |
| ! | ATAGGTTGAGGCATAACGCA+AGG | + | chr3_2:18447311-18447330 | None:intergenic | 45.0% |
| GAGGTGTAGTAAGTGGTGAT+AGG | + | chr3_2:18447329-18447348 | None:intergenic | 45.0% | |
| AAGCTTGTCTGCTGAAAGAG+AGG | + | chr3_2:18447348-18447367 | None:intergenic | 45.0% | |
| ! | AGCAGACAAGCTTCCTGTTT+TGG | - | chr3_2:18447355-18447374 | Msa0398090:three_prime_UTR | 45.0% |
| CAAACAACTGCAGTATGCAC+AGG | + | chr3_2:18447383-18447402 | None:intergenic | 45.0% | |
| GCTAGACTCATGCTCATCAT+TGG | + | chr3_2:18447462-18447481 | None:intergenic | 45.0% | |
| ! | CGCTCACTACTTGTGCTTTT+TGG | + | chr3_2:18447548-18447567 | None:intergenic | 45.0% |
| ! | ATCATGGCAGAGTTGATTGG+TGG | - | chr3_2:18449051-18449070 | Msa0398090:intron | 45.0% |
| ! | GCTTGATCGTCTAAAACACG+AGG | - | chr3_2:18449248-18449267 | Msa0398090:intron | 45.0% |
| ACCGATTGGTGAAAGCTGAA+AGG | + | chr3_2:18449344-18449363 | None:intergenic | 45.0% | |
| TGCAGAGCAAAAGGATGTGT+TGG | - | chr3_2:18449407-18449426 | Msa0398090:intron | 45.0% | |
| GCAGAGCAAAAGGATGTGTT+GGG | - | chr3_2:18449408-18449427 | Msa0398090:intron | 45.0% | |
| ATCTCCAACTGCATCTTTGG+TGG | - | chr3_2:18449491-18449510 | Msa0398090:intron | 45.0% | |
| TCATCCACCAAAGATGCAGT+TGG | + | chr3_2:18449498-18449517 | None:intergenic | 45.0% | |
| !! | ATCAACATAGTGGGTTTGGG+TGG | - | chr3_2:18449606-18449625 | Msa0398090:intron | 45.0% |
| !! | TCAACATAGTGGGTTTGGGT+GGG | - | chr3_2:18449607-18449626 | Msa0398090:intron | 45.0% |
| CATTGTAGACAAGCTGTGCA+AGG | + | chr3_2:18449647-18449666 | None:intergenic | 45.0% | |
| CCCTTTAACCATGGATCTTC+TGG | - | chr3_2:18449900-18449919 | Msa0398090:intron | 45.0% | |
| AGATACTAGAGGCTGACATG+TGG | - | chr3_2:18450186-18450205 | Msa0398090:CDS | 45.0% | |
| TCAGATTCGAAGGGAGGTAA+TGG | + | chr3_2:18450262-18450281 | None:intergenic | 45.0% | |
| AACAGCGCTTCAGATTCGAA+GGG | + | chr3_2:18450271-18450290 | None:intergenic | 45.0% | |
| AAACAGCGCTTCAGATTCGA+AGG | + | chr3_2:18450272-18450291 | None:intergenic | 45.0% | |
| !! | ATCAAGCTTTGGATGGCAGA+AGG | - | chr3_2:18450344-18450363 | Msa0398090:intron | 45.0% |
| TTGCGGATGTTGTCATTCTG+TGG | - | chr3_2:18450749-18450768 | Msa0398090:intron | 45.0% | |
| !! | GAGTGATTTTGTTGTGGGAG+AGG | - | chr3_2:18451039-18451058 | Msa0398090:intron | 45.0% |
| ! | TTTGTTGTGGGAGAGGAGAA+TGG | - | chr3_2:18451046-18451065 | Msa0398090:intron | 45.0% |
| TTGTTGTGGGAGAGGAGAAT+GGG | - | chr3_2:18451047-18451066 | Msa0398090:intron | 45.0% | |
| !! | AATTAATAAATTGTAATAAT+TGG | - | chr3_2:18448584-18448603 | Msa0398090:intron | 5.0% |
| AACTGACTGCGAACTCCCTA+TGG | - | chr3_2:18446896-18446915 | Msa0398090:three_prime_UTR | 50.0% | |
| ACTGACTGCGAACTCCCTAT+GGG | - | chr3_2:18446897-18446916 | Msa0398090:three_prime_UTR | 50.0% | |
| CTAGTAAGGTCTCCCCCATA+GGG | + | chr3_2:18446914-18446933 | None:intergenic | 50.0% | |
| AAGTCAGATGCATGGACCAG+AGG | + | chr3_2:18446948-18446967 | None:intergenic | 50.0% | |
| GGTCCATGCATCTGACTTAG+AGG | - | chr3_2:18446950-18446969 | Msa0398090:three_prime_UTR | 50.0% | |
| !! | GGGCTAGCCATTGTCACAAT+AGG | + | chr3_2:18447116-18447135 | None:intergenic | 50.0% |
| CTAGATGAGAGGCTAGTAGC+AGG | - | chr3_2:18447164-18447183 | Msa0398090:three_prime_UTR | 50.0% | |
| ! | ATTCTGGGGGGATGATGATG+TGG | - | chr3_2:18447247-18447266 | Msa0398090:three_prime_UTR | 50.0% |
| ! | TGACCCTGCATCTTCTGGTT+TGG | - | chr3_2:18447271-18447290 | Msa0398090:three_prime_UTR | 50.0% |
| CTGTCCAAACCAGAAGATGC+AGG | + | chr3_2:18447278-18447297 | None:intergenic | 50.0% | |
| GTATGCACAGGCTCCAAAAC+AGG | + | chr3_2:18447371-18447390 | None:intergenic | 50.0% | |
| TGCTGCAGCTCAAAGAAGTG+TGG | - | chr3_2:18447406-18447425 | Msa0398090:three_prime_UTR | 50.0% | |
| ! | TAGCTGCTGATGGATAGGCA+AGG | + | chr3_2:18447484-18447503 | None:intergenic | 50.0% |
| ACAGGTTCAGGCCTTAATCC+TGG | - | chr3_2:18447733-18447752 | Msa0398090:three_prime_UTR | 50.0% | |
| !! | ATAGTGGGTTTGGGTGGGAT+GGG | - | chr3_2:18449612-18449631 | Msa0398090:intron | 50.0% |
| AGCTTGTCTACAATGACCGC+AGG | - | chr3_2:18449652-18449671 | Msa0398090:intron | 50.0% | |
| TACTAGAGGCTGACATGTGG+CGG | - | chr3_2:18450189-18450208 | Msa0398090:CDS | 50.0% | |
| TAAGGGATTACGCAGCCTTC+TGG | - | chr3_2:18450646-18450665 | Msa0398090:intron | 50.0% | |
| CTGACTGCGAACTCCCTATG+GGG | - | chr3_2:18446898-18446917 | Msa0398090:three_prime_UTR | 55.0% | |
| TGACTGCGAACTCCCTATGG+GGG | - | chr3_2:18446899-18446918 | Msa0398090:three_prime_UTR | 55.0% | |
| GCTAGTAAGGTCTCCCCCAT+AGG | + | chr3_2:18446915-18446934 | None:intergenic | 55.0% | |
| GTGGATGACCCTGCATCTTC+TGG | - | chr3_2:18447266-18447285 | Msa0398090:three_prime_UTR | 55.0% | |
| CATCTTGCAGAGAGCCTCTC+AGG | - | chr3_2:18449012-18449031 | Msa0398090:intron | 55.0% | |
| !! | CATAGTGGGTTTGGGTGGGA+TGG | - | chr3_2:18449611-18449630 | Msa0398090:intron | 55.0% |
| !! | TAGTGGGTTTGGGTGGGATG+GGG | - | chr3_2:18449613-18449632 | Msa0398090:intron | 55.0% |
| GTAGACAAGCTGTGCAAGGG+TGG | + | chr3_2:18449643-18449662 | None:intergenic | 55.0% | |
| !! | AGAGGCTTGCTTTTCACGGC+AGG | - | chr3_2:18450033-18450052 | Msa0398090:intron | 55.0% |
| AGCGCTTCAGATTCGAAGGG+AGG | + | chr3_2:18450268-18450287 | None:intergenic | 55.0% | |
| ! | AGCCTTCTGGTTGTACGACG+AGG | - | chr3_2:18450659-18450678 | Msa0398090:intron | 55.0% |
| GGCCTCGTCGTACAACCAGA+AGG | + | chr3_2:18450664-18450683 | None:intergenic | 60.0% | |
| CTGGTTGTACGACGAGGCCA+TGG | - | chr3_2:18450665-18450684 | Msa0398090:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 18446243 | 18451141 | 18446243 | ID=Msa0398090;Name=Msa0398090 |
| chr3_2 | mRNA | 18446243 | 18451141 | 18446243 | ID=Msa0398090-mRNA-1;Parent=Msa0398090;Name=Msa0398090-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.2|0.16|0.83|0.8|0.83|6|2097|145 |
| chr3_2 | exon | 18446243 | 18448362 | 18446243 | ID=Msa0398090-mRNA-1:exon:4133;Parent=Msa0398090-mRNA-1 |
| chr3_2 | exon | 18450157 | 18450316 | 18450157 | ID=Msa0398090-mRNA-1:exon:4132;Parent=Msa0398090-mRNA-1 |
| chr3_2 | exon | 18450398 | 18450499 | 18450398 | ID=Msa0398090-mRNA-1:exon:4131;Parent=Msa0398090-mRNA-1 |
| chr3_2 | exon | 18450693 | 18450698 | 18450693 | ID=Msa0398090-mRNA-1:exon:4130;Parent=Msa0398090-mRNA-1 |
| chr3_2 | exon | 18450834 | 18450972 | 18450834 | ID=Msa0398090-mRNA-1:exon:4129;Parent=Msa0398090-mRNA-1 |
| chr3_2 | exon | 18451134 | 18451141 | 18451134 | ID=Msa0398090-mRNA-1:exon:4128;Parent=Msa0398090-mRNA-1 |
| chr3_2 | CDS | 18451134 | 18451141 | 18451134 | ID=Msa0398090-mRNA-1:cds;Parent=Msa0398090-mRNA-1 |
| chr3_2 | CDS | 18450834 | 18450972 | 18450834 | ID=Msa0398090-mRNA-1:cds;Parent=Msa0398090-mRNA-1 |
| chr3_2 | CDS | 18450693 | 18450698 | 18450693 | ID=Msa0398090-mRNA-1:cds;Parent=Msa0398090-mRNA-1 |
| chr3_2 | CDS | 18450398 | 18450499 | 18450398 | ID=Msa0398090-mRNA-1:cds;Parent=Msa0398090-mRNA-1 |
| chr3_2 | CDS | 18450157 | 18450316 | 18450157 | ID=Msa0398090-mRNA-1:cds;Parent=Msa0398090-mRNA-1 |
| chr3_2 | CDS | 18448340 | 18448362 | 18448340 | ID=Msa0398090-mRNA-1:cds;Parent=Msa0398090-mRNA-1 |
| chr3_2 | three_prime_UTR | 18446243 | 18448339 | 18446243 | ID=Msa0398090-mRNA-1:three_prime_utr;Parent=Msa0398090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
