AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0399000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0399000 MtrunA17_Chr3g0087291 94.957 575 17 2 1 575 1 563 0.0 1124
Msa0399000 MtrunA17_Chr4g0010511 69.920 625 136 9 1 575 1 623 0.0 801
Msa0399000 MtrunA17_Chr4g0070551 36.259 433 260 7 145 568 192 617 5.54e-87 282
Msa0399000 MtrunA17_Chr5g0426591 38.022 455 231 13 144 568 78 511 3.18e-84 272
Msa0399000 MtrunA17_Chr3g0129981 36.961 441 245 11 149 568 83 511 6.81e-83 268
Msa0399000 MtrunA17_Chr4g0008451 36.195 431 253 9 154 572 205 625 1.96e-80 265
Msa0399000 MtrunA17_Chr5g0448581 36.323 446 262 11 135 571 70 502 1.09e-77 256
Msa0399000 MtrunA17_Chr3g0132371 35.281 462 244 10 146 575 107 545 1.87e-77 254
Msa0399000 MtrunA17_Chr3g0143821 36.761 457 258 15 130 573 59 497 6.32e-77 254
Msa0399000 MtrunA17_Chr6g0455571 38.503 374 216 6 188 551 118 487 7.22e-76 249
Msa0399000 MtrunA17_Chr4g0056061 38.243 387 225 8 188 568 111 489 1.03e-75 250
Msa0399000 MtrunA17_Chr5g0399311 35.927 437 264 9 138 568 79 505 6.26e-75 247
Msa0399000 MtrunA17_Chr5g0436321 37.179 390 233 6 188 568 164 550 1.11e-74 248
Msa0399000 MtrunA17_Chr4g0042711 36.683 398 233 9 188 571 100 492 3.90e-73 242
Msa0399000 MtrunA17_Chr4g0061781 37.337 383 223 8 179 550 111 487 5.88e-71 237
Msa0399000 MtrunA17_Chr5g0412251 34.061 458 245 9 153 568 59 501 8.26e-71 236
Msa0399000 MtrunA17_Chr2g0307971 36.870 377 223 7 179 545 110 481 5.72e-70 234
Msa0399000 MtrunA17_Chr4g0043911 33.937 442 262 11 146 568 117 547 1.36e-69 234
Msa0399000 MtrunA17_Chr5g0417871 35.075 402 242 8 188 575 88 484 2.84e-68 229
Msa0399000 MtrunA17_Chr1g0160781 32.819 454 276 9 135 569 104 547 4.21e-67 227
Msa0399000 MtrunA17_Chr3g0132951 32.334 467 247 9 150 568 70 515 1.19e-66 225
Msa0399000 MtrunA17_Chr5g0424241 32.886 447 270 8 146 568 119 559 2.66e-66 226
Msa0399000 MtrunA17_Chr1g0204121 30.841 428 275 9 154 571 61 477 1.47e-65 222
Msa0399000 MtrunA17_Chr3g0123521 33.032 442 265 12 150 568 114 547 2.49e-65 223
Msa0399000 MtrunA17_Chr3g0077321 33.417 398 245 7 188 568 150 544 1.42e-62 216
Msa0399000 MtrunA17_Chr1g0204141 29.167 432 280 11 154 571 61 480 4.02e-55 194
Msa0399000 MtrunA17_Chr2g0284071 29.060 468 275 15 150 568 181 640 1.11e-46 173
Msa0399000 MtrunA17_Chr4g0075311 30.626 431 243 12 188 568 167 591 2.07e-46 172
Msa0399000 MtrunA17_Chr4g0003561 27.041 392 244 12 188 568 78 438 2.33e-33 132
Msa0399000 MtrunA17_Chr7g0220381 29.310 290 190 6 188 462 101 390 1.51e-30 126
Msa0399000 MtrunA17_Chr1g0146501 29.932 294 191 6 188 466 93 386 5.83e-29 122
Msa0399000 MtrunA17_Chr3g0127811 28.349 321 207 8 160 466 35 346 1.57e-27 115
Msa0399000 MtrunA17_Chr4g0002361 25.872 344 194 13 188 513 89 389 3.32e-21 96.3
Msa0399000 MtrunA17_Chr2g0298881 25.127 394 225 16 153 521 5 353 2.56e-20 92.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0399000 AT2G44500.1 67.487 569 154 6 11 570 17 563 0.0 761
Msa0399000 AT3G07900.1 61.592 578 194 8 10 573 14 577 0.0 692
Msa0399000 AT5G63390.1 62.143 420 158 1 150 568 129 548 0.0 565
Msa0399000 AT2G44500.2 63.592 412 119 6 11 413 17 406 2.40e-171 493
Msa0399000 AT5G64600.1 35.102 490 280 11 103 569 41 515 1.83e-80 262
Msa0399000 AT5G35570.1 36.175 434 249 10 153 571 223 643 4.96e-80 265
Msa0399000 AT1G22460.1 35.308 439 261 5 146 568 126 557 3.27e-79 260
Msa0399000 AT3G54100.1 35.023 434 254 9 154 572 195 615 3.60e-78 259
Msa0399000 AT5G01100.1 35.116 430 259 8 154 571 190 611 1.13e-77 258
Msa0399000 AT1G20550.1 36.047 430 262 9 148 573 74 494 1.73e-77 256
Msa0399000 AT1G76270.1 35.321 436 259 8 147 573 70 491 8.39e-76 251
Msa0399000 AT2G37980.1 34.186 430 263 9 154 572 199 619 4.73e-74 248
Msa0399000 AT4G24530.1 34.549 466 236 11 151 568 72 516 6.51e-73 242
Msa0399000 AT2G03280.1 37.968 374 214 7 189 550 92 459 2.61e-72 239
Msa0399000 AT4G38390.1 34.703 438 261 9 147 573 87 510 1.10e-71 240
Msa0399000 AT5G15740.1 36.997 373 221 6 188 550 109 477 1.50e-71 238
Msa0399000 AT5G65470.1 33.333 468 251 10 146 569 53 503 1.18e-69 233
Msa0399000 AT1G14020.1 35.500 400 237 8 189 573 95 488 1.98e-69 233
Msa0399000 AT3G02250.1 36.388 371 226 5 188 550 109 477 6.58e-69 231
Msa0399000 AT1G14970.2 33.486 436 262 8 151 568 7 432 6.94e-69 229
Msa0399000 AT1G14970.1 33.410 434 261 8 153 568 129 552 5.96e-67 228
Msa0399000 AT2G03280.2 35.411 401 214 8 189 550 92 486 1.25e-66 225
Msa0399000 AT4G16650.2 39.433 388 219 10 188 568 125 503 1.45e-66 226
Msa0399000 AT4G16650.1 39.433 388 219 10 188 568 125 503 1.45e-66 226
Msa0399000 AT1G14970.3 33.824 408 250 6 178 568 2 406 7.31e-66 221
Msa0399000 AT3G26370.1 34.673 398 240 9 188 568 161 555 7.50e-65 222
Msa0399000 AT1G38065.2 33.257 439 245 11 165 568 3 428 7.32e-64 217
Msa0399000 AT1G38065.1 33.495 412 231 9 188 568 39 438 2.14e-63 216
Msa0399000 AT1G38131.1 33.257 439 245 11 165 568 132 557 9.39e-63 217
Msa0399000 AT2G01480.1 33.577 411 253 6 174 567 143 550 2.90e-62 215
Msa0399000 AT1G35510.1 31.797 434 270 8 154 570 134 558 8.03e-62 214
Msa0399000 AT1G04910.1 30.140 428 272 11 154 568 61 474 6.00e-61 210
Msa0399000 AT2G01480.2 34.146 369 228 4 174 527 143 511 1.38e-57 202
Msa0399000 AT1G11990.1 29.446 523 318 16 87 569 78 589 3.06e-54 194
Msa0399000 AT1G62330.1 29.814 483 267 16 144 570 185 651 1.06e-53 194
Msa0399000 AT1G11990.2 27.737 548 317 16 87 569 78 611 4.04e-49 180
Msa0399000 AT1G29200.4 32.009 453 251 14 164 568 50 493 1.30e-47 174
Msa0399000 AT1G29200.1 32.009 453 251 14 164 568 50 493 1.30e-47 174
Msa0399000 AT1G29200.2 32.009 453 251 14 164 568 166 609 5.28e-47 174
Msa0399000 AT1G29200.3 32.319 427 233 13 190 568 1 419 4.87e-46 167
Msa0399000 AT3G30300.2 31.959 291 181 7 188 462 103 392 9.82e-34 136
Msa0399000 AT3G30300.1 31.959 291 181 7 188 462 103 392 9.82e-34 136
Msa0399000 AT3G26370.2 35.714 182 103 4 188 356 161 341 6.34e-30 122
Msa0399000 AT3G03810.2 31.525 295 185 7 188 466 92 385 1.34e-29 124
Msa0399000 AT3G03810.1 31.525 295 185 7 188 466 92 385 1.34e-29 124
Msa0399000 AT1G52630.1 24.615 390 254 13 188 568 77 435 5.03e-29 120
Msa0399000 AT1G52630.2 23.873 377 247 13 201 568 2 347 1.53e-25 108

Find 135 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCTTATGGTTGTTGTTTC+TGG 0.112650 3_2:+21215504 Msa0399000:CDS
CTGTTTCTTGTTGGTTTCTT+TGG 0.136955 3_2:+21215108 Msa0399000:CDS
TTGGGAAACTCTTGAATTAA+TGG 0.174432 3_2:-21217533 None:intergenic
AGTGAAGAATTTAGAAAATA+AGG 0.209967 3_2:-21217930 None:intergenic
GCCATCTCATGGAGGAAATA+TGG 0.218103 3_2:+21217670 Msa0399000:CDS
GTTGTTATTGCTAGGATTCT+TGG 0.223923 3_2:+21215564 Msa0399000:CDS
TAACTTCTTTGCATTGTTCT+TGG 0.233140 3_2:-21214953 None:intergenic
TCAACACTTATAATTGTTAT+TGG 0.237204 3_2:+21218391 Msa0399000:three_prime_UTR
GTTGTTCTTGAAGACTTCTT+TGG 0.242557 3_2:-21215048 None:intergenic
TTAACACAAGATTCTGGTTT+AGG 0.282059 3_2:+21218109 Msa0399000:three_prime_UTR
TTTGCAAGTCAATGTTATTT+GGG 0.282289 3_2:+21215608 Msa0399000:CDS
ACATCTAATCACCTTTATAT+TGG 0.293624 3_2:+21218327 Msa0399000:three_prime_UTR
AAATATGGGCCGTGCAATTC+AGG 0.296659 3_2:+21217685 Msa0399000:CDS
CAGGGTCACAGGGCATTTAC+TGG 0.296805 3_2:+21217867 Msa0399000:intron
TTCTTTGGTATGTTCAAGTT+TGG 0.303269 3_2:+21215123 Msa0399000:CDS
TACACATTAACACAAGATTC+TGG 0.326039 3_2:+21218103 Msa0399000:three_prime_UTR
TTGGAAGAAACCAAATGGTT+TGG 0.327696 3_2:+21215407 Msa0399000:CDS
TTGAAGAGAAGAAGATGAAA+TGG 0.332178 3_2:-21215010 None:intergenic
AACACTACCAAAACCAAGTT+TGG 0.332544 3_2:-21215229 None:intergenic
AAGCACTTCAATTTCCTTCC+AGG 0.337343 3_2:+21218205 Msa0399000:three_prime_UTR
GATCTCCCAGTCAAGAGTTC+TGG 0.338558 3_2:-21217008 None:intergenic
GAACTACATCAAGACTCATT+AGG 0.340180 3_2:+21217984 Msa0399000:CDS
TGGAAGAAACCAAATGGTTT+GGG 0.343688 3_2:+21215408 Msa0399000:CDS
CTCAGAGACTATGTAATCTA+TGG 0.350975 3_2:-21217630 None:intergenic
ACTCCCATCAATACTTAGTT+AGG 0.360740 3_2:+21218507 Msa0399000:three_prime_UTR
TTTCTTGCTCTGTTTCTTGT+TGG 0.361638 3_2:+21215099 Msa0399000:CDS
TGAGAACTTCTGAAGATTTG+TGG 0.370747 3_2:-21215184 None:intergenic
TAGGATTCTTGGTGCTGCTT+TGG 0.371467 3_2:+21215575 Msa0399000:CDS
TCTTTGTCCTTTGAATGTTA+TGG 0.380150 3_2:+21217064 Msa0399000:CDS
CAAACCTAACTAAGTATTGA+TGG 0.385611 3_2:-21218511 None:intergenic
TTTATACAAAGTGATTGTAT+AGG 0.386560 3_2:+21218585 Msa0399000:three_prime_UTR
CTCTTGAATTAATGGAAGTA+AGG 0.387396 3_2:-21217525 None:intergenic
CATGTGCAATTTCAAGCAAA+AGG 0.388265 3_2:+21215354 Msa0399000:CDS
GAGAATTACAACCATTTGTA+AGG 0.389523 3_2:+21217588 Msa0399000:CDS
CTTCTAATTGAAGACATGTT+TGG 0.394301 3_2:+21218269 Msa0399000:three_prime_UTR
GGTTTATATCCCAAACCATT+TGG 0.399353 3_2:-21215417 None:intergenic
ATAACATTGACTTGCAAAAC+AGG 0.403737 3_2:-21215603 None:intergenic
AACTACATCAAGACTCATTA+GGG 0.406423 3_2:+21217985 Msa0399000:CDS
CTTGTCATTATGTGTGTTGA+TGG 0.406673 3_2:-21215910 None:intergenic
GTGAGGACTGGTTGTCTCCC+TGG 0.412895 3_2:+21216936 Msa0399000:CDS
TCACCAGAAAATCAACACTA+TGG 0.414871 3_2:+21215076 Msa0399000:CDS
TGTAAGGAAAGCTTCTCTAA+TGG 0.420479 3_2:+21217604 Msa0399000:CDS
CCTTGCTCTACATTTAAGAA+TGG 0.422287 3_2:+21216899 Msa0399000:CDS
ACGTGTCACTGTCGTGTGTC+TGG 0.431738 3_2:+21218419 Msa0399000:three_prime_UTR
TCTCTGAAGAAGAGTTCAAC+AGG 0.437881 3_2:+21217952 Msa0399000:CDS
TGTCGGTGCTTCAGGGTCAC+AGG 0.440376 3_2:+21217856 Msa0399000:intron
AGAGAAGCTTTCCTTACAAA+TGG 0.441636 3_2:-21217599 None:intergenic
ACACGTAGGTACCAATATAA+AGG 0.443031 3_2:-21218338 None:intergenic
TTGTTACCAAGTTCCTCAAT+TGG 0.443511 3_2:-21216843 None:intergenic
GGATAGAAGAAAGTATCTTA+TGG 0.445638 3_2:+21215491 Msa0399000:CDS
CAAGAACAAGAACAAGAAAG+AGG 0.446863 3_2:+21215315 Msa0399000:CDS
TAAATTTCTTGTTCAGTGGT+AGG 0.448101 3_2:-21218140 None:intergenic
AAGAAATTTAAGTGCTATTG+TGG 0.450967 3_2:+21218153 Msa0399000:three_prime_UTR
TGGGCTGGAGGGAAACCATT+GGG 0.467264 3_2:+21217491 Msa0399000:CDS
TGAATGTTATGGAAGTTATG+AGG 0.467991 3_2:+21217075 Msa0399000:CDS
CTTATGGTTGTTGTTTCTGG+TGG 0.468482 3_2:+21215507 Msa0399000:CDS
TTTGAGGAAATGAGGTATCA+GGG 0.468647 3_2:-21215152 None:intergenic
CTTGTGTTAATGTGTAAATC+AGG 0.470402 3_2:-21218096 None:intergenic
AAATTTCTTGTTCAGTGGTA+GGG 0.479002 3_2:-21218139 None:intergenic
AAGGAAGATCTTGCCTTGCC+AGG 0.480516 3_2:+21217566 Msa0399000:CDS
TTCTGAAGATTTGTGGAGCA+TGG 0.482167 3_2:-21215177 None:intergenic
ATAAGTGTTGATGCCGGTCT+CGG 0.484933 3_2:-21218379 None:intergenic
ATTATAGGAGAGAAAGTGAA+AGG 0.485674 3_2:+21215460 Msa0399000:CDS
ACAAATGGTTGTAATTCTCC+TGG 0.488364 3_2:-21217584 None:intergenic
CCATCTCATGGAGGAAATAT+GGG 0.491947 3_2:+21217671 Msa0399000:CDS
AAGATTTGCTGAGCCAATTG+AGG 0.493764 3_2:+21216830 Msa0399000:CDS
CAAAGACCAGAACTCTTGAC+TGG 0.496719 3_2:+21217002 Msa0399000:CDS
AGTGGAGGCCTTCCTTCTAC+TGG 0.497198 3_2:-21215934 None:intergenic
CACTTCATGCCACTCCGAGT+TGG 0.500852 3_2:+21215953 Msa0399000:CDS
GCTGAGCCAATTGAGGAACT+TGG 0.502782 3_2:+21216837 Msa0399000:CDS
ATAATGACAAGGCCAGTAGA+AGG 0.516354 3_2:+21215922 Msa0399000:CDS
ATGTTATTTGGGGTGATGAA+AGG 0.517325 3_2:+21215619 Msa0399000:CDS
AGCACTTCAATTTCCTTCCA+GGG 0.518471 3_2:+21218206 Msa0399000:three_prime_UTR
TTGGGCTGGAGGGAAACCAT+TGG 0.519413 3_2:+21217490 Msa0399000:CDS
TTTCAAGCAAAAGGGTCTAG+TGG 0.520630 3_2:+21215363 Msa0399000:CDS
ATGGAGTTTATGATTTGTGA+TGG 0.526571 3_2:-21214991 None:intergenic
TCACATTCTCTGAAACTCAA+TGG 0.529041 3_2:+21214924 Msa0399000:exon
TTTAGGTTACTGAAAGCTCT+AGG 0.530891 3_2:+21217443 Msa0399000:intron
AAAGATGTTTGGGTGAGGAC+TGG 0.531396 3_2:+21216924 Msa0399000:CDS
ATAACTTCCATAACATTCAA+AGG 0.536006 3_2:-21217071 None:intergenic
CTTGGACTCGAGGCTTTCAA+AGG 0.536650 3_2:+21216490 Msa0399000:CDS
TTGCACATGCACTCAGGGAC+AGG 0.536918 3_2:-21218056 None:intergenic
TAGAAGTGTTGATGCTACAT+AGG 0.543474 3_2:-21218252 None:intergenic
ATGTGCAATTTCAAGCAAAA+GGG 0.544157 3_2:+21215355 Msa0399000:CDS
TACTGGTGTCATGTCCGTCT+CGG 0.548632 3_2:-21218295 None:intergenic
TTAACAACCTCGTCGTACTC+AGG 0.550367 3_2:-21216966 None:intergenic
TCTTCAGAAGCTTCGTTGCA+AGG 0.550451 3_2:+21216526 Msa0399000:CDS
AGAGTTCAACAGGATTATCA+AGG 0.552469 3_2:+21217962 Msa0399000:CDS
CGAAGCTTCTGAAGATCAGA+AGG 0.555068 3_2:-21216518 None:intergenic
TTGATGCTGTTGTTATTGCT+AGG 0.555554 3_2:+21215556 Msa0399000:CDS
CTTAAATGTAGAGCAAGGTA+AGG 0.555897 3_2:-21216894 None:intergenic
CTCTTCTGAGATATCTTGCA+CGG 0.560668 3_2:-21215978 None:intergenic
CACTTAAATTTCTTGTTCAG+TGG 0.564084 3_2:-21218144 None:intergenic
CCCATATTTCCTCCATGAGA+TGG 0.564743 3_2:-21217671 None:intergenic
AAACCTAACTAAGTATTGAT+GGG 0.566898 3_2:-21218510 None:intergenic
ATTGATGGGAGTACACCTGC+AGG 0.567644 3_2:-21218496 None:intergenic
TTATAGGAGAGAAAGTGAAA+GGG 0.567770 3_2:+21215461 Msa0399000:CDS
CTCGGAGTGGCATGAAGTGG+AGG 0.577955 3_2:-21215949 None:intergenic
GAGTCATTGCACATGCACTC+AGG 0.578022 3_2:-21218062 None:intergenic
GTCGGTGCTTCAGGGTCACA+GGG 0.578580 3_2:+21217857 Msa0399000:intron
CCATTCTTAAATGTAGAGCA+AGG 0.580365 3_2:-21216899 None:intergenic
AGTCATTGCACATGCACTCA+GGG 0.583624 3_2:-21218061 None:intergenic
CAACTCGGAGTGGCATGAAG+TGG 0.586354 3_2:-21215952 None:intergenic
TCGTGTCTAGTGTCCGAGAC+CGG 0.588509 3_2:+21218366 Msa0399000:three_prime_UTR
TTAGATGTAATCAAATGTAC+TGG 0.588698 3_2:-21218312 None:intergenic
AATTTAAGTGCTATTGTGGA+TGG 0.590007 3_2:+21218157 Msa0399000:three_prime_UTR
CCACTCTCACATCATTTGCA+AGG 0.590073 3_2:-21215876 None:intergenic
TCGTACTCAGGAGTTAGACC+AGG 0.591094 3_2:-21216954 None:intergenic
CATTAGGGCAACCAGAACTC+AGG 0.594270 3_2:+21218000 Msa0399000:CDS
ATGAAGCATTGACACAGATA+CGG 0.594899 3_2:-21218445 None:intergenic
GGGATGTATGTGTAAAAGAA+TGG 0.596514 3_2:-21218475 None:intergenic
TGGTTGTAATTCTCCTGGCA+AGG 0.596530 3_2:-21217579 None:intergenic
ACAATTATAAGTGTTGATGC+CGG 0.603765 3_2:-21218385 None:intergenic
GCACTTCAATTTCCTTCCAG+GGG 0.606283 3_2:+21218207 Msa0399000:three_prime_UTR
ACAATCATACCTGAATTGCA+CGG 0.606633 3_2:-21217694 None:intergenic
GCAGAGAGAATGAAAAGCAA+AGG 0.608567 3_2:+21216870 Msa0399000:CDS
GGAAATTGAAGTGCTTCCAA+AGG 0.614475 3_2:-21218198 None:intergenic
CACTTCAATTTCCTTCCAGG+GGG 0.614929 3_2:+21218208 Msa0399000:three_prime_UTR
TATCTTGCACGGATCCAACT+CGG 0.616793 3_2:-21215967 None:intergenic
GACATGTTTGGTGTCCGAGA+CGG 0.620081 3_2:+21218281 Msa0399000:three_prime_UTR
ACTATGCAGTTCAATAGAGA+AGG 0.620483 3_2:+21216449 Msa0399000:intron
TGACAAGGCCAGTAGAAGGA+AGG 0.621089 3_2:+21215926 Msa0399000:CDS
TGTTAATGTGTAAATCAGGA+TGG 0.639309 3_2:-21218092 None:intergenic
CCTTGCAAATGATGTGAGAG+TGG 0.651378 3_2:+21215876 Msa0399000:CDS
TTGCAAGTCAATGTTATTTG+GGG 0.663997 3_2:+21215609 Msa0399000:CDS
TCATTACTAAAACTCAAACA+AGG 0.670567 3_2:-21215438 None:intergenic
TGCACGGATCCAACTCGGAG+TGG 0.677266 3_2:-21215962 None:intergenic
TTGATGGGAGTACACCTGCA+GGG 0.679548 3_2:-21218495 None:intergenic
AAAGACCAGAACTCTTGACT+GGG 0.680016 3_2:+21217003 Msa0399000:CDS
CATCAACACACATAATGACA+AGG 0.683592 3_2:+21215911 Msa0399000:CDS
TAGACACGACACTGACACGT+AGG 0.697905 3_2:-21218352 None:intergenic
CTGGTGGAATGAATCAACAG+AGG 0.701934 3_2:+21215523 Msa0399000:CDS
CGTACTCAGGAGTTAGACCA+GGG 0.716251 3_2:-21216953 None:intergenic
GCTGGAGGGAAACCATTGGG+TGG 0.722830 3_2:+21217494 Msa0399000:CDS
TCTAACTCCTGAGTACGACG+AGG 0.782469 3_2:+21216959 Msa0399000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTCTCAAATTATTAT+CGG + chr3_2:21217264-21217283 Msa0399000:intron 10.0%
!!! TGAAAAAGCTTATAATATTT+TGG - chr3_2:21216339-21216358 None:intergenic 15.0%
!! TAATAACTATATTCTAATAG+CGG - chr3_2:21217352-21217371 None:intergenic 15.0%
!! AAAAGATGCAAAAATTTATT+GGG + chr3_2:21217472-21217491 Msa0399000:CDS 15.0%
!!! ACATTTTCATAAATTATTAC+TGG + chr3_2:21217790-21217809 Msa0399000:intron 15.0%
!!! TGAGTTTTAGTAATGATTAT+AGG + chr3_2:21215445-21215464 Msa0399000:CDS 20.0%
!! TTGATTGTAACAATATATGT+CGG + chr3_2:21216174-21216193 Msa0399000:intron 20.0%
!!! AAGTTGTAATCTAAATTTTC+AGG + chr3_2:21216791-21216810 Msa0399000:intron 20.0%
!! ATAAGTGACTTATTGTAAAA+GGG - chr3_2:21217163-21217182 None:intergenic 20.0%
!!! CAATAAATTTTTGCATCTTT+TGG - chr3_2:21217473-21217492 None:intergenic 20.0%
!! CAAAAGATGCAAAAATTTAT+TGG + chr3_2:21217471-21217490 Msa0399000:CDS 20.0%
!! TCTTCCTTATTGTAAAAATT+GGG - chr3_2:21217554-21217573 None:intergenic 20.0%
!! ATCTTCCTTATTGTAAAAAT+TGG - chr3_2:21217555-21217574 None:intergenic 20.0%
!! AGTGAAGAATTTAGAAAATA+AGG - chr3_2:21217933-21217952 None:intergenic 20.0%
!!! GTTTCATTTTTTTATTCCTT+TGG + chr3_2:21218182-21218201 Msa0399000:three_prime_UTR 20.0%
!! TCAACACTTATAATTGTTAT+TGG + chr3_2:21218391-21218410 Msa0399000:three_prime_UTR 20.0%
!! TTTATACAAAGTGATTGTAT+AGG + chr3_2:21218585-21218604 Msa0399000:three_prime_UTR 20.0%
! TCATTACTAAAACTCAAACA+AGG - chr3_2:21215441-21215460 None:intergenic 25.0%
!! TTTTGCAAGTCAATGTTATT+TGG + chr3_2:21215607-21215626 Msa0399000:CDS 25.0%
!! TTTGCAAGTCAATGTTATTT+GGG + chr3_2:21215608-21215627 Msa0399000:CDS 25.0%
! ACCAAAATTAATGTAATCAG+AGG + chr3_2:21216269-21216288 Msa0399000:intron 25.0%
!!! TTCATATTTTTGACCTAGTT+TGG + chr3_2:21216355-21216374 Msa0399000:intron 25.0%
! ATCAGATATAATGAGCAAAA+GGG - chr3_2:21216415-21216434 None:intergenic 25.0%
! TATCAGATATAATGAGCAAA+AGG - chr3_2:21216416-21216435 None:intergenic 25.0%
! TAAGAATGGAAAAAGATGTT+TGG + chr3_2:21216913-21216932 Msa0399000:CDS 25.0%
! AAGAATGGAAAAAGATGTTT+GGG + chr3_2:21216914-21216933 Msa0399000:CDS 25.0%
! ATAACTTCCATAACATTCAA+AGG - chr3_2:21217074-21217093 None:intergenic 25.0%
! CATAAGTGACTTATTGTAAA+AGG - chr3_2:21217164-21217183 None:intergenic 25.0%
!!! ATGTTTCTGGTTTCATATTT+AGG + chr3_2:21217426-21217445 Msa0399000:intron 25.0%
!! GTTTCCCAATTTTTACAATA+AGG + chr3_2:21217547-21217566 Msa0399000:CDS 25.0%
!! AAGAAATTTAAGTGCTATTG+TGG + chr3_2:21218153-21218172 Msa0399000:three_prime_UTR 25.0%
! TTAGATGTAATCAAATGTAC+TGG - chr3_2:21218315-21218334 None:intergenic 25.0%
! ACATCTAATCACCTTTATAT+TGG + chr3_2:21218327-21218346 Msa0399000:three_prime_UTR 25.0%
!!! AAACCTAACTAAGTATTGAT+GGG - chr3_2:21218513-21218532 None:intergenic 25.0%
TAACTTCTTTGCATTGTTCT+TGG - chr3_2:21214956-21214975 None:intergenic 30.0%
! ATGGAGTTTATGATTTGTGA+TGG - chr3_2:21214994-21215013 None:intergenic 30.0%
TTGAAGAGAAGAAGATGAAA+TGG - chr3_2:21215013-21215032 None:intergenic 30.0%
!!! AAACCATAGTGTTGATTTTC+TGG - chr3_2:21215082-21215101 None:intergenic 30.0%
! TTCTTTGGTATGTTCAAGTT+TGG + chr3_2:21215123-21215142 Msa0399000:CDS 30.0%
! CATCATTCATTTTCCAAACT+TGG + chr3_2:21215216-21215235 Msa0399000:CDS 30.0%
! TCATTTTCCAAACTTGGTTT+TGG + chr3_2:21215222-21215241 Msa0399000:CDS 30.0%
ATGTGCAATTTCAAGCAAAA+GGG + chr3_2:21215355-21215374 Msa0399000:CDS 30.0%
! TTGAGAAAAAGAGTGAGTTT+TGG + chr3_2:21215388-21215407 Msa0399000:CDS 30.0%
ATTATAGGAGAGAAAGTGAA+AGG + chr3_2:21215460-21215479 Msa0399000:CDS 30.0%
TTATAGGAGAGAAAGTGAAA+GGG + chr3_2:21215461-21215480 Msa0399000:CDS 30.0%
!! GGATAGAAGAAAGTATCTTA+TGG + chr3_2:21215491-21215510 Msa0399000:CDS 30.0%
!! TATCTTATGGTTGTTGTTTC+TGG + chr3_2:21215504-21215523 Msa0399000:CDS 30.0%
!! ATAACATTGACTTGCAAAAC+AGG - chr3_2:21215606-21215625 None:intergenic 30.0%
! TTGCAAGTCAATGTTATTTG+GGG + chr3_2:21215609-21215628 Msa0399000:CDS 30.0%
ATCATCGTAAACTACGAAAA+AGG - chr3_2:21215671-21215690 None:intergenic 30.0%
!! AAGAATAGTTCACTGCTTTT+TGG + chr3_2:21216002-21216021 Msa0399000:intron 30.0%
ATTCAACAAATGTACACTGT+AGG - chr3_2:21216063-21216082 None:intergenic 30.0%
!!! ATAGATGTCATTTTCAGACA+AGG + chr3_2:21216089-21216108 Msa0399000:intron 30.0%
! GCCTCTGATTACATTAATTT+TGG - chr3_2:21216273-21216292 None:intergenic 30.0%
CAACAAATTTGTAGGTACAA+GGG - chr3_2:21216298-21216317 None:intergenic 30.0%
!! GATTTTGAGAAGTTGAGTTA+GGG - chr3_2:21216609-21216628 None:intergenic 30.0%
CTAACTCAACTTCTCAAAAT+CGG + chr3_2:21216608-21216627 Msa0399000:intron 30.0%
GACTTACCATCAAAGAAAAA+TGG + chr3_2:21217037-21217056 Msa0399000:CDS 30.0%
TCTTTGTCCTTTGAATGTTA+TGG + chr3_2:21217064-21217083 Msa0399000:CDS 30.0%
TGAATGTTATGGAAGTTATG+AGG + chr3_2:21217075-21217094 Msa0399000:CDS 30.0%
TTGTAAAAGGGCTACTAAAT+AGG - chr3_2:21217151-21217170 None:intergenic 30.0%
GATTTCATGATAGATGTTTC+TGG + chr3_2:21217413-21217432 Msa0399000:intron 30.0%
CTCTTGAATTAATGGAAGTA+AGG - chr3_2:21217528-21217547 None:intergenic 30.0%
TTGGGAAACTCTTGAATTAA+TGG - chr3_2:21217536-21217555 None:intergenic 30.0%
GAGAATTACAACCATTTGTA+AGG + chr3_2:21217588-21217607 Msa0399000:CDS 30.0%
AACTACATCAAGACTCATTA+GGG + chr3_2:21217985-21218004 Msa0399000:CDS 30.0%
AACTCAGGACTAACAAAAAT+GGG + chr3_2:21218015-21218034 Msa0399000:CDS 30.0%
TGTTAATGTGTAAATCAGGA+TGG - chr3_2:21218095-21218114 None:intergenic 30.0%
CTTGTGTTAATGTGTAAATC+AGG - chr3_2:21218099-21218118 None:intergenic 30.0%
TACACATTAACACAAGATTC+TGG + chr3_2:21218103-21218122 Msa0399000:three_prime_UTR 30.0%
!! TTAACACAAGATTCTGGTTT+AGG + chr3_2:21218109-21218128 Msa0399000:three_prime_UTR 30.0%
AAATTTCTTGTTCAGTGGTA+GGG - chr3_2:21218142-21218161 None:intergenic 30.0%
TAAATTTCTTGTTCAGTGGT+AGG - chr3_2:21218143-21218162 None:intergenic 30.0%
CACTTAAATTTCTTGTTCAG+TGG - chr3_2:21218147-21218166 None:intergenic 30.0%
! AATTTAAGTGCTATTGTGGA+TGG + chr3_2:21218157-21218176 Msa0399000:three_prime_UTR 30.0%
CTTCTAATTGAAGACATGTT+TGG + chr3_2:21218269-21218288 Msa0399000:three_prime_UTR 30.0%
!! ACAATTATAAGTGTTGATGC+CGG - chr3_2:21218388-21218407 None:intergenic 30.0%
!! CAAACCTAACTAAGTATTGA+TGG - chr3_2:21218514-21218533 None:intergenic 30.0%
!! TCACATTCTCTGAAACTCAA+TGG + chr3_2:21214924-21214943 Msa0399000:exon 35.0%
GTTGTTCTTGAAGACTTCTT+TGG - chr3_2:21215051-21215070 None:intergenic 35.0%
!!! TGTTGATTTTCTGGTGAAGA+TGG - chr3_2:21215073-21215092 None:intergenic 35.0%
TCACCAGAAAATCAACACTA+TGG + chr3_2:21215076-21215095 Msa0399000:CDS 35.0%
! TTTCTTGCTCTGTTTCTTGT+TGG + chr3_2:21215099-21215118 Msa0399000:CDS 35.0%
!! CTGTTTCTTGTTGGTTTCTT+TGG + chr3_2:21215108-21215127 Msa0399000:CDS 35.0%
! TTTGAGGAAATGAGGTATCA+GGG - chr3_2:21215155-21215174 None:intergenic 35.0%
!! TTTTGAGGAAATGAGGTATC+AGG - chr3_2:21215156-21215175 None:intergenic 35.0%
! TGAGAACTTCTGAAGATTTG+TGG - chr3_2:21215187-21215206 None:intergenic 35.0%
AACACTACCAAAACCAAGTT+TGG - chr3_2:21215232-21215251 None:intergenic 35.0%
CTTGCAAAAACTCGTCATTA+TGG - chr3_2:21215293-21215312 None:intergenic 35.0%
CAAGAACAAGAACAAGAAAG+AGG + chr3_2:21215315-21215334 Msa0399000:CDS 35.0%
! ACAAGAAAGAGGACAGTTTT+TGG + chr3_2:21215326-21215345 Msa0399000:CDS 35.0%
CATGTGCAATTTCAAGCAAA+AGG + chr3_2:21215354-21215373 Msa0399000:CDS 35.0%
!!! GAGTTTTGGAAGAAACCAAA+TGG + chr3_2:21215402-21215421 Msa0399000:CDS 35.0%
TTGGAAGAAACCAAATGGTT+TGG + chr3_2:21215407-21215426 Msa0399000:CDS 35.0%
TGGAAGAAACCAAATGGTTT+GGG + chr3_2:21215408-21215427 Msa0399000:CDS 35.0%
GGTTTATATCCCAAACCATT+TGG - chr3_2:21215420-21215439 None:intergenic 35.0%
!! AGAAAGTGAAAGGGTTTTGA+AGG + chr3_2:21215470-21215489 Msa0399000:CDS 35.0%
! TTGATGCTGTTGTTATTGCT+AGG + chr3_2:21215556-21215575 Msa0399000:CDS 35.0%
! GTTGTTATTGCTAGGATTCT+TGG + chr3_2:21215564-21215583 Msa0399000:CDS 35.0%
! ATGTTATTTGGGGTGATGAA+AGG + chr3_2:21215619-21215638 Msa0399000:CDS 35.0%
AACCAAAACGACAATGACAT+CGG - chr3_2:21215810-21215829 None:intergenic 35.0%
CTTGTCATTATGTGTGTTGA+TGG - chr3_2:21215913-21215932 None:intergenic 35.0%
CATCAACACACATAATGACA+AGG + chr3_2:21215911-21215930 Msa0399000:CDS 35.0%
GGACTCAAAATTATTCACAC+AGG - chr3_2:21216042-21216061 None:intergenic 35.0%
! TCATTTTCAGACAAGGTCAT+CGG + chr3_2:21216096-21216115 Msa0399000:intron 35.0%
GCAACAAATTTGTAGGTACA+AGG - chr3_2:21216299-21216318 None:intergenic 35.0%
ATTGCAGGCAACAAATTTGT+AGG - chr3_2:21216306-21216325 None:intergenic 35.0%
GACCTAGTTTGGAAAAAGTA+AGG + chr3_2:21216366-21216385 Msa0399000:intron 35.0%
!!! CACCTTACTTTTTCCAAACT+AGG - chr3_2:21216371-21216390 None:intergenic 35.0%
TTGAACTGCATAGTACAACA+AGG - chr3_2:21216443-21216462 None:intergenic 35.0%
ACTATGCAGTTCAATAGAGA+AGG + chr3_2:21216449-21216468 Msa0399000:intron 35.0%
TGCGTTCGTGAAAATAAGTT+AGG + chr3_2:21216583-21216602 Msa0399000:intron 35.0%
!! CGATTTTGAGAAGTTGAGTT+AGG - chr3_2:21216610-21216629 None:intergenic 35.0%
ACGCACTATTTAGACCATAT+CGG + chr3_2:21216661-21216680 Msa0399000:intron 35.0%
!! TATTTTCTTGCTTTTCCTCG+CGG - chr3_2:21216720-21216739 None:intergenic 35.0%
TTTCACAATCTGCAATCACT+TGG - chr3_2:21216773-21216792 None:intergenic 35.0%
TTGTTACCAAGTTCCTCAAT+TGG - chr3_2:21216846-21216865 None:intergenic 35.0%
CTTAAATGTAGAGCAAGGTA+AGG - chr3_2:21216897-21216916 None:intergenic 35.0%
CCATTCTTAAATGTAGAGCA+AGG - chr3_2:21216902-21216921 None:intergenic 35.0%
CCTTGCTCTACATTTAAGAA+TGG + chr3_2:21216899-21216918 Msa0399000:CDS 35.0%
TACCATCAAAGAAAAATGGC+TGG + chr3_2:21217041-21217060 Msa0399000:CDS 35.0%
!! CTATATTCTAATAGCGGACA+TGG - chr3_2:21217346-21217365 None:intergenic 35.0%
! TTTAGGTTACTGAAAGCTCT+AGG + chr3_2:21217443-21217462 Msa0399000:intron 35.0%
GATGCAAAAATTTATTGGGC+TGG + chr3_2:21217476-21217495 Msa0399000:CDS 35.0%
! CAAAAATTTATTGGGCTGGA+GGG + chr3_2:21217480-21217499 Msa0399000:CDS 35.0%
ACAAATGGTTGTAATTCTCC+TGG - chr3_2:21217587-21217606 None:intergenic 35.0%
AGAGAAGCTTTCCTTACAAA+TGG - chr3_2:21217602-21217621 None:intergenic 35.0%
TGTAAGGAAAGCTTCTCTAA+TGG + chr3_2:21217604-21217623 Msa0399000:CDS 35.0%
CTCAGAGACTATGTAATCTA+TGG - chr3_2:21217633-21217652 None:intergenic 35.0%
ACAATCATACCTGAATTGCA+CGG - chr3_2:21217697-21217716 None:intergenic 35.0%
TATGATTGTCAAGTTCGACA+AGG + chr3_2:21217708-21217727 Msa0399000:intron 35.0%
ATGATTGTCAAGTTCGACAA+GGG + chr3_2:21217709-21217728 Msa0399000:intron 35.0%
AGAGTTCAACAGGATTATCA+AGG + chr3_2:21217962-21217981 Msa0399000:CDS 35.0%
GAACTACATCAAGACTCATT+AGG + chr3_2:21217984-21218003 Msa0399000:CDS 35.0%
! TTTTTGTTAGTCCTGAGTTC+TGG - chr3_2:21218014-21218033 None:intergenic 35.0%
GAACTCAGGACTAACAAAAA+TGG + chr3_2:21218014-21218033 Msa0399000:CDS 35.0%
!! TAGAAGTGTTGATGCTACAT+AGG - chr3_2:21218255-21218274 None:intergenic 35.0%
ACACGTAGGTACCAATATAA+AGG - chr3_2:21218341-21218360 None:intergenic 35.0%
!! ATGAAGCATTGACACAGATA+CGG - chr3_2:21218448-21218467 None:intergenic 35.0%
GGGATGTATGTGTAAAAGAA+TGG - chr3_2:21218478-21218497 None:intergenic 35.0%
ACTCCCATCAATACTTAGTT+AGG + chr3_2:21218507-21218526 Msa0399000:three_prime_UTR 35.0%
!! GCATGGTTTTTGAGGAAATG+AGG - chr3_2:21215163-21215182 None:intergenic 40.0%
! TTTGTGGAGCATGGTTTTTG+AGG - chr3_2:21215171-21215190 None:intergenic 40.0%
! TTCTGAAGATTTGTGGAGCA+TGG - chr3_2:21215180-21215199 None:intergenic 40.0%
TTTCAAGCAAAAGGGTCTAG+TGG + chr3_2:21215363-21215382 Msa0399000:CDS 40.0%
!! CTTATGGTTGTTGTTTCTGG+TGG + chr3_2:21215507-21215526 Msa0399000:CDS 40.0%
!!! GTTTGGTGTCTGACATGTTT+TGG + chr3_2:21215745-21215764 Msa0399000:intron 40.0%
!! TACCGATGTCATTGTCGTTT+TGG + chr3_2:21215805-21215824 Msa0399000:intron 40.0%
!!! CGTTTTGGTTGCAGTGAATT+TGG + chr3_2:21215820-21215839 Msa0399000:intron 40.0%
ATAATGACAAGGCCAGTAGA+AGG + chr3_2:21215922-21215941 Msa0399000:CDS 40.0%
!! CTCTTCTGAGATATCTTGCA+CGG - chr3_2:21215981-21216000 None:intergenic 40.0%
CAATACTGACATTGACACGT+TGG + chr3_2:21216122-21216141 Msa0399000:intron 40.0%
TTTGGCTACTCAACAATTGC+AGG - chr3_2:21216321-21216340 None:intergenic 40.0%
!!! GAAGGTGTTTTGCTTTTACG+TGG + chr3_2:21216467-21216486 Msa0399000:CDS 40.0%
!! TGTTTTGCTTTTACGTGGCT+TGG + chr3_2:21216472-21216491 Msa0399000:CDS 40.0%
TCTCACATCAGCTGATGATA+TGG - chr3_2:21216688-21216707 None:intergenic 40.0%
!! AAGATTTGCTGAGCCAATTG+AGG + chr3_2:21216830-21216849 Msa0399000:CDS 40.0%
GCAGAGAGAATGAAAAGCAA+AGG + chr3_2:21216870-21216889 Msa0399000:CDS 40.0%
TGGAAAAAGATGTTTGGGTG+AGG + chr3_2:21216919-21216938 Msa0399000:CDS 40.0%
AAAGACCAGAACTCTTGACT+GGG + chr3_2:21217003-21217022 Msa0399000:CDS 40.0%
!!! GACCAGCCATTTTTCTTTGA+TGG - chr3_2:21217046-21217065 None:intergenic 40.0%
! GCAAAAATTTATTGGGCTGG+AGG + chr3_2:21217479-21217498 Msa0399000:CDS 40.0%
! GATGTTTTCATGCCATCTCA+TGG + chr3_2:21217659-21217678 Msa0399000:CDS 40.0%
CCATCTCATGGAGGAAATAT+GGG + chr3_2:21217671-21217690 Msa0399000:CDS 40.0%
TGTCAGATACTAACACGAGT+TGG - chr3_2:21217748-21217767 None:intergenic 40.0%
GTCTGATGTTTGTGTCTTGT+CGG + chr3_2:21217839-21217858 Msa0399000:intron 40.0%
!! GGAAGCATGTGTCTTTTGTT+TGG - chr3_2:21217912-21217931 None:intergenic 40.0%
! TCTCTGAAGAAGAGTTCAAC+AGG + chr3_2:21217952-21217971 Msa0399000:CDS 40.0%
! GGAAATTGAAGTGCTTCCAA+AGG - chr3_2:21218201-21218220 None:intergenic 40.0%
AAGCACTTCAATTTCCTTCC+AGG + chr3_2:21218205-21218224 Msa0399000:three_prime_UTR 40.0%
AGCACTTCAATTTCCTTCCA+GGG + chr3_2:21218206-21218225 Msa0399000:three_prime_UTR 40.0%
! TTTTACACATACATCCCTGC+AGG + chr3_2:21218481-21218500 Msa0399000:three_prime_UTR 40.0%
CTGGTGGAATGAATCAACAG+AGG + chr3_2:21215523-21215542 Msa0399000:CDS 45.0%
!! TAGGATTCTTGGTGCTGCTT+TGG + chr3_2:21215575-21215594 Msa0399000:CDS 45.0%
! CTTCACATTGAAGGCGTGTT+TGG + chr3_2:21215728-21215747 Msa0399000:intron 45.0%
CCACTCTCACATCATTTGCA+AGG - chr3_2:21215879-21215898 None:intergenic 45.0%
CCTTGCAAATGATGTGAGAG+TGG + chr3_2:21215876-21215895 Msa0399000:CDS 45.0%
TATCTTGCACGGATCCAACT+CGG - chr3_2:21215970-21215989 None:intergenic 45.0%
CTTCAGATTGAAGACGCGTT+TGG - chr3_2:21216220-21216239 None:intergenic 45.0%
! CGAAGCTTCTGAAGATCAGA+AGG - chr3_2:21216521-21216540 None:intergenic 45.0%
TCTTCAGAAGCTTCGTTGCA+AGG + chr3_2:21216526-21216545 Msa0399000:CDS 45.0%
GCTGATGATATGGTCCGATA+TGG - chr3_2:21216678-21216697 None:intergenic 45.0%
AAAGATGTTTGGGTGAGGAC+TGG + chr3_2:21216924-21216943 Msa0399000:CDS 45.0%
TTAACAACCTCGTCGTACTC+AGG - chr3_2:21216969-21216988 None:intergenic 45.0%
CAAAGACCAGAACTCTTGAC+TGG + chr3_2:21217002-21217021 Msa0399000:CDS 45.0%
!! TCACTTATGTAGCACCGATG+TGG + chr3_2:21217175-21217194 Msa0399000:intron 45.0%
!! CACTTATGTAGCACCGATGT+GGG + chr3_2:21217176-21217195 Msa0399000:intron 45.0%
TCACGAGTTGCTGTCAAACA+CGG + chr3_2:21217205-21217224 Msa0399000:intron 45.0%
GGACATGAAGCACACAAACA+CGG - chr3_2:21217325-21217344 None:intergenic 45.0%
! AAGGCTTCTTTTCCACCCAA+TGG - chr3_2:21217509-21217528 None:intergenic 45.0%
TGGTTGTAATTCTCCTGGCA+AGG - chr3_2:21217582-21217601 None:intergenic 45.0%
! GTTTTCATGCCATCTCATGG+AGG + chr3_2:21217662-21217681 Msa0399000:CDS 45.0%
GCCATCTCATGGAGGAAATA+TGG + chr3_2:21217670-21217689 Msa0399000:CDS 45.0%
CCCATATTTCCTCCATGAGA+TGG - chr3_2:21217674-21217693 None:intergenic 45.0%
AAATATGGGCCGTGCAATTC+AGG + chr3_2:21217685-21217704 Msa0399000:CDS 45.0%
AGTCATTGCACATGCACTCA+GGG - chr3_2:21218064-21218083 None:intergenic 45.0%
GCACTTCAATTTCCTTCCAG+GGG + chr3_2:21218207-21218226 Msa0399000:three_prime_UTR 45.0%
CACTTCAATTTCCTTCCAGG+GGG + chr3_2:21218208-21218227 Msa0399000:three_prime_UTR 45.0%
TCTTATAGTTTCCCCCTGGA+AGG - chr3_2:21218222-21218241 None:intergenic 45.0%
GAACTCTTATAGTTTCCCCC+TGG - chr3_2:21218226-21218245 None:intergenic 45.0%
!! ATAAGTGTTGATGCCGGTCT+CGG - chr3_2:21218382-21218401 None:intergenic 45.0%
! GCACTGACGCTTCACATTGA+AGG + chr3_2:21215719-21215738 Msa0399000:intron 50.0%
TGACAAGGCCAGTAGAAGGA+AGG + chr3_2:21215926-21215945 Msa0399000:CDS 50.0%
!! TTTTACGTGGCTTGGACTCG+AGG + chr3_2:21216480-21216499 Msa0399000:CDS 50.0%
CTTGGACTCGAGGCTTTCAA+AGG + chr3_2:21216490-21216509 Msa0399000:CDS 50.0%
GCTGAGCCAATTGAGGAACT+TGG + chr3_2:21216837-21216856 Msa0399000:CDS 50.0%
CGTACTCAGGAGTTAGACCA+GGG - chr3_2:21216956-21216975 None:intergenic 50.0%
TCGTACTCAGGAGTTAGACC+AGG - chr3_2:21216957-21216976 None:intergenic 50.0%
TCTAACTCCTGAGTACGACG+AGG + chr3_2:21216959-21216978 Msa0399000:CDS 50.0%
GATCTCCCAGTCAAGAGTTC+TGG - chr3_2:21217011-21217030 None:intergenic 50.0%
!! TTATGTAGCACCGATGTGGG+TGG + chr3_2:21217179-21217198 Msa0399000:intron 50.0%
AAGGAAGATCTTGCCTTGCC+AGG + chr3_2:21217566-21217585 Msa0399000:CDS 50.0%
! TTGTGTCTTGTCGGTGCTTC+AGG + chr3_2:21217848-21217867 Msa0399000:intron 50.0%
! TGTGTCTTGTCGGTGCTTCA+GGG + chr3_2:21217849-21217868 Msa0399000:intron 50.0%
CATTAGGGCAACCAGAACTC+AGG + chr3_2:21218000-21218019 Msa0399000:CDS 50.0%
GAGTCATTGCACATGCACTC+AGG - chr3_2:21218065-21218084 None:intergenic 50.0%
!! GACATGTTTGGTGTCCGAGA+CGG + chr3_2:21218281-21218300 Msa0399000:three_prime_UTR 50.0%
!! TACTGGTGTCATGTCCGTCT+CGG - chr3_2:21218298-21218317 None:intergenic 50.0%
TAGACACGACACTGACACGT+AGG - chr3_2:21218355-21218374 None:intergenic 50.0%
! TTGATGGGAGTACACCTGCA+GGG - chr3_2:21218498-21218517 None:intergenic 50.0%
! ATTGATGGGAGTACACCTGC+AGG - chr3_2:21218499-21218518 None:intergenic 50.0%
AGTGGAGGCCTTCCTTCTAC+TGG - chr3_2:21215937-21215956 None:intergenic 55.0%
CAACTCGGAGTGGCATGAAG+TGG - chr3_2:21215955-21215974 None:intergenic 55.0%
CACTTCATGCCACTCCGAGT+TGG + chr3_2:21215953-21215972 Msa0399000:CDS 55.0%
GTGAGACTAAGCATACCGCG+AGG + chr3_2:21216702-21216721 Msa0399000:intron 55.0%
CTCGTGATGACCACCCACAT+CGG - chr3_2:21217192-21217211 None:intergenic 55.0%
! TTGGGCTGGAGGGAAACCAT+TGG + chr3_2:21217490-21217509 Msa0399000:CDS 55.0%
! TGGGCTGGAGGGAAACCATT+GGG + chr3_2:21217491-21217510 Msa0399000:CDS 55.0%
! CAGGGTCACAGGGCATTTAC+TGG + chr3_2:21217867-21217886 Msa0399000:intron 55.0%
TTGCACATGCACTCAGGGAC+AGG - chr3_2:21218059-21218078 None:intergenic 55.0%
TCGTGTCTAGTGTCCGAGAC+CGG + chr3_2:21218366-21218385 Msa0399000:three_prime_UTR 55.0%
! ACGTGTCACTGTCGTGTGTC+TGG + chr3_2:21218419-21218438 Msa0399000:three_prime_UTR 55.0%
CTCGGAGTGGCATGAAGTGG+AGG - chr3_2:21215952-21215971 None:intergenic 60.0%
TGCACGGATCCAACTCGGAG+TGG - chr3_2:21215965-21215984 None:intergenic 60.0%
!! GTGAGGACTGGTTGTCTCCC+TGG + chr3_2:21216936-21216955 Msa0399000:CDS 60.0%
GCTGGAGGGAAACCATTGGG+TGG + chr3_2:21217494-21217513 Msa0399000:CDS 60.0%
! TGTCGGTGCTTCAGGGTCAC+AGG + chr3_2:21217856-21217875 Msa0399000:intron 60.0%
! GTCGGTGCTTCAGGGTCACA+GGG + chr3_2:21217857-21217876 Msa0399000:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 21214883 21218703 21214883 ID=Msa0399000;Name=Msa0399000
chr3_2 mRNA 21214883 21218703 21214883 ID=Msa0399000-mRNA-1;Parent=Msa0399000;Name=Msa0399000-mRNA-1;_AED=0.07;_eAED=0.07;_QI=60|1|1|1|1|1|6|603|575
chr3_2 exon 21214883 21215640 21214883 ID=Msa0399000-mRNA-1:exon:4634;Parent=Msa0399000-mRNA-1
chr3_2 exon 21215834 21215999 21215834 ID=Msa0399000-mRNA-1:exon:4635;Parent=Msa0399000-mRNA-1
chr3_2 exon 21216458 21216547 21216458 ID=Msa0399000-mRNA-1:exon:4636;Parent=Msa0399000-mRNA-1
chr3_2 exon 21216813 21217096 21216813 ID=Msa0399000-mRNA-1:exon:4637;Parent=Msa0399000-mRNA-1
chr3_2 exon 21217448 21217706 21217448 ID=Msa0399000-mRNA-1:exon:4638;Parent=Msa0399000-mRNA-1
chr3_2 exon 21217870 21218703 21217870 ID=Msa0399000-mRNA-1:exon:4639;Parent=Msa0399000-mRNA-1
chr3_2 five_prime_UTR 21214883 21214942 21214883 ID=Msa0399000-mRNA-1:five_prime_utr;Parent=Msa0399000-mRNA-1
chr3_2 CDS 21214943 21215640 21214943 ID=Msa0399000-mRNA-1:cds;Parent=Msa0399000-mRNA-1
chr3_2 CDS 21215834 21215999 21215834 ID=Msa0399000-mRNA-1:cds;Parent=Msa0399000-mRNA-1
chr3_2 CDS 21216458 21216547 21216458 ID=Msa0399000-mRNA-1:cds;Parent=Msa0399000-mRNA-1
chr3_2 CDS 21216813 21217096 21216813 ID=Msa0399000-mRNA-1:cds;Parent=Msa0399000-mRNA-1
chr3_2 CDS 21217448 21217706 21217448 ID=Msa0399000-mRNA-1:cds;Parent=Msa0399000-mRNA-1
chr3_2 CDS 21217870 21218100 21217870 ID=Msa0399000-mRNA-1:cds;Parent=Msa0399000-mRNA-1
chr3_2 three_prime_UTR 21218101 21218703 21218101 ID=Msa0399000-mRNA-1:three_prime_utr;Parent=Msa0399000-mRNA-1
Gene Sequence

>Msa0399000

ATGGCAAAATCCAAGAACAATGCAAAGAAGTTATCATACATATCAGTTCCATCACAAATCATAAACTCCATTTCATCTTCTTCTCTTCAATCTCTCATTGATTCTCCAAAGAAGTCTTCAAGAACAACCATCTTCACCAGAAAATCAACACTATGGTTTCTTGCTCTGTTTCTTGTTGGTTTCTTTGGTATGTTCAAGTTTGGTTTCAACCCTGATACCTCATTTCCTCAAAAACCATGCTCCACAAATCTTCAGAAGTTCTCAATATCAAATCATCATTCATTTTCCAAACTTGGTTTTGGTAGTGTTCTCTTGCAGAAAGAGAGAAAAATATCTTTGAAAAATGACCATAATGACGAGTTTTTGCAAGAACAAGAACAAGAACAAGAAAGAGGACAGTTTTTGGTTTCTCATGTGCAATTTCAAGCAAAAGGGTCTAGTGGATTTGAGAAAAAGAGTGAGTTTTGGAAGAAACCAAATGGTTTGGGATATAAACCTTGTTTGAGTTTTAGTAATGATTATAGGAGAGAAAGTGAAAGGGTTTTGAAGGATAGAAGAAAGTATCTTATGGTTGTTGTTTCTGGTGGAATGAATCAACAGAGGAATCAGATTGTTGATGCTGTTGTTATTGCTAGGATTCTTGGTGCTGCTTTGGTTGTTCCTGTTTTGCAAGTCAATGTTATTTGGGGTGATGAAAGTGAATTTGGTGACATATTTGATTTAGAACACTTCAAAAAAGTCCTTGCAAATGATGTGAGAGTGGTTTCAGCATTGCCATCAACACACATAATGACAAGGCCAGTAGAAGGAAGGCCTCCACTTCATGCCACTCCGAGTTGGATCCGTGCAAGATATCTCAGAAGATTCAATAGAGAAGGTGTTTTGCTTTTACGTGGCTTGGACTCGAGGCTTTCAAAGGATCTTCCTTCTGATCTTCAGAAGCTTCGTTGCAAGGTAGCTTTTAATGCATTAAGATTTGCTGAGCCAATTGAGGAACTTGGTAACAAGATTGCAGAGAGAATGAAAAGCAAAGGACCTTACCTTGCTCTACATTTAAGAATGGAAAAAGATGTTTGGGTGAGGACTGGTTGTCTCCCTGGTCTAACTCCTGAGTACGACGAGGTTGTTAACAATGAGAGAATACAAAGACCAGAACTCTTGACTGGGAGATCAAACATGACTTACCATCAAAGAAAAATGGCTGGTCTTTGTCCTTTGAATGTTATGGAAGTTATGAGGTTACTGAAAGCTCTAGGAGCTCCAAAAGATGCAAAAATTTATTGGGCTGGAGGGAAACCATTGGGTGGAAAAGAAGCCTTACTTCCATTAATTCAAGAGTTTCCCAATTTTTACAATAAGGAAGATCTTGCCTTGCCAGGAGAATTACAACCATTTGTAAGGAAAGCTTCTCTAATGGCTGCCATAGATTACATAGTCTCTGAGAAGAGTGATGTTTTCATGCCATCTCATGGAGGAAATATGGGCCGTGCAATTCAGGGTCACAGGGCATTTACTGGACACAAGAAATATATAACTCCAAACAAAAGACACATGCTTCCTTATTTTCTAAATTCTTCACTCTCTGAAGAAGAGTTCAACAGGATTATCAAGGAACTACATCAAGACTCATTAGGGCAACCAGAACTCAGGACTAACAAAAATGGGAGAGATGTTACAAAGTATCCTGTCCCTGAGTGCATGTGCAATGACTCACACGCTCCATCCTGA
Protein sequence

>Msa0399000

MAKSKNNAKKLSYISVPSQIINSISSSSLQSLIDSPKKSSRTTIFTRKSTLWFLALFLVGFFGMFKFGFNPDTSFPQKPCSTNLQKFSISNHHSFSKLGFGSVLLQKERKISLKNDHNDEFLQEQEQEQERGQFLVSHVQFQAKGSSGFEKKSEFWKKPNGLGYKPCLSFSNDYRRESERVLKDRRKYLMVVVSGGMNQQRNQIVDAVVIARILGAALVVPVLQVNVIWGDESEFGDIFDLEHFKKVLANDVRVVSALPSTHIMTRPVEGRPPLHATPSWIRARYLRRFNREGVLLLRGLDSRLSKDLPSDLQKLRCKVAFNALRFAEPIEELGNKIAERMKSKGPYLALHLRMEKDVWVRTGCLPGLTPEYDEVVNNERIQRPELLTGRSNMTYHQRKMAGLCPLNVMEVMRLLKALGAPKDAKIYWAGGKPLGGKEALLPLIQEFPNFYNKEDLALPGELQPFVRKASLMAAIDYIVSEKSDVFMPSHGGNMGRAIQGHRAFTGHKKYITPNKRHMLPYFLNSSLSEEEFNRIIKELHQDSLGQPELRTNKNGRDVTKYPVPECMCNDSHAPS*