AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0352080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0352080 MtrunA17_Chr3g0087291 93.357 572 24 2 1 572 1 558 0.0 1036
Msa0352080 MtrunA17_Chr4g0010511 68.921 621 147 10 1 575 1 621 0.0 782
Msa0352080 MtrunA17_Chr4g0070551 36.259 433 260 7 147 570 192 617 2.22e-86 280
Msa0352080 MtrunA17_Chr5g0426591 36.660 491 256 14 116 570 40 511 1.82e-84 273
Msa0352080 MtrunA17_Chr3g0129981 36.281 441 248 11 151 570 83 511 7.16e-81 263
Msa0352080 MtrunA17_Chr5g0448581 36.404 445 261 11 137 572 70 501 3.28e-78 258
Msa0352080 MtrunA17_Chr4g0008451 35.047 428 256 9 156 571 205 622 9.67e-78 258
Msa0352080 MtrunA17_Chr3g0132371 35.281 462 241 11 145 574 107 542 1.15e-76 253
Msa0352080 MtrunA17_Chr5g0399311 36.156 437 263 9 140 570 79 505 3.37e-76 251
Msa0352080 MtrunA17_Chr3g0143821 35.256 468 272 15 118 572 45 494 1.42e-75 250
Msa0352080 MtrunA17_Chr4g0056061 37.984 387 226 8 190 570 111 489 2.05e-75 249
Msa0352080 MtrunA17_Chr6g0455571 37.968 374 218 6 190 553 118 487 3.32e-75 248
Msa0352080 MtrunA17_Chr5g0436321 36.410 390 236 6 190 570 164 550 1.67e-73 245
Msa0352080 MtrunA17_Chr4g0042711 36.203 395 233 9 190 570 100 489 9.75e-72 238
Msa0352080 MtrunA17_Chr5g0412251 34.423 459 242 10 155 570 59 501 2.39e-71 237
Msa0352080 MtrunA17_Chr4g0061781 36.898 374 220 7 190 552 119 487 3.13e-70 235
Msa0352080 MtrunA17_Chr4g0043911 33.260 454 269 11 148 578 117 559 5.78e-70 235
Msa0352080 MtrunA17_Chr2g0307971 36.413 368 220 6 190 547 118 481 3.86e-69 232
Msa0352080 MtrunA17_Chr5g0417871 35.264 397 238 8 190 572 88 479 1.09e-67 228
Msa0352080 MtrunA17_Chr1g0160781 31.992 472 292 10 121 573 88 549 4.24e-67 227
Msa0352080 MtrunA17_Chr3g0132951 32.762 467 245 9 152 570 70 515 9.70e-67 226
Msa0352080 MtrunA17_Chr5g0424241 32.373 451 275 8 148 574 119 563 1.07e-65 224
Msa0352080 MtrunA17_Chr1g0204121 30.093 432 281 9 156 577 61 481 2.64e-65 221
Msa0352080 MtrunA17_Chr3g0123521 32.579 442 267 12 152 570 114 547 3.61e-64 219
Msa0352080 MtrunA17_Chr3g0077321 32.558 430 265 9 158 570 123 544 1.11e-62 216
Msa0352080 MtrunA17_Chr1g0204141 28.440 436 286 11 156 577 61 484 6.81e-55 194
Msa0352080 MtrunA17_Chr2g0284071 28.846 468 276 15 152 570 181 640 1.57e-46 173
Msa0352080 MtrunA17_Chr4g0075311 30.162 431 245 12 190 570 167 591 1.14e-45 170
Msa0352080 MtrunA17_Chr4g0003561 27.083 384 254 11 190 570 78 438 3.29e-33 132
Msa0352080 MtrunA17_Chr7g0220381 30.000 290 188 6 190 464 101 390 6.47e-31 127
Msa0352080 MtrunA17_Chr1g0146501 29.932 294 191 6 190 468 93 386 5.03e-29 122
Msa0352080 MtrunA17_Chr3g0127811 28.037 321 208 8 162 468 35 346 5.11e-27 114
Msa0352080 MtrunA17_Chr4g0002361 25.581 344 195 13 190 515 89 389 1.24e-20 94.7
Msa0352080 MtrunA17_Chr2g0298881 24.619 394 227 16 155 523 5 353 1.54e-19 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0352080 AT2G44500.1 66.725 571 157 6 11 572 17 563 0.0 753
Msa0352080 AT3G07900.1 60.720 583 195 7 10 576 14 578 0.0 683
Msa0352080 AT5G63390.1 61.124 427 163 2 147 570 122 548 0.0 562
Msa0352080 AT2G44500.2 62.802 414 121 6 11 415 17 406 2.13e-168 485
Msa0352080 AT5G35570.1 35.831 427 258 7 155 572 223 642 1.16e-79 264
Msa0352080 AT1G22460.1 35.068 442 264 5 148 573 126 560 5.91e-79 259
Msa0352080 AT5G64600.1 36.136 440 244 10 155 571 90 515 3.44e-78 256
Msa0352080 AT5G01100.1 34.346 428 261 8 156 571 190 609 4.36e-76 254
Msa0352080 AT1G20550.1 35.363 427 263 9 150 572 74 491 5.30e-76 252
Msa0352080 AT3G54100.1 34.107 431 256 9 156 571 195 612 4.19e-75 251
Msa0352080 AT1G76270.1 34.873 433 259 8 149 572 70 488 3.95e-74 247
Msa0352080 AT4G24530.1 34.549 466 236 11 153 570 72 516 3.41e-72 240
Msa0352080 AT2G37980.1 33.568 426 265 8 156 571 199 616 4.24e-72 243
Msa0352080 AT2G03280.1 37.297 370 222 5 191 552 92 459 2.79e-71 237
Msa0352080 AT5G15740.1 36.729 373 222 6 190 552 109 477 5.67e-71 237
Msa0352080 AT5G65470.1 33.974 468 248 11 148 571 53 503 1.97e-70 235
Msa0352080 AT4G38390.1 36.997 373 214 6 189 550 125 487 1.11e-69 234
Msa0352080 AT1G14020.1 35.550 391 239 6 191 570 95 483 2.35e-68 230
Msa0352080 AT1G14970.2 32.658 444 271 8 153 578 7 440 3.03e-68 228
Msa0352080 AT3G02250.1 35.849 371 228 5 190 552 109 477 4.12e-68 229
Msa0352080 AT1G14970.1 32.579 442 270 8 155 578 129 560 3.18e-66 226
Msa0352080 AT4G16650.2 39.175 388 220 10 190 570 125 503 7.36e-66 224
Msa0352080 AT4G16650.1 39.175 388 220 10 190 570 125 503 7.36e-66 224
Msa0352080 AT2G03280.2 34.761 397 222 6 191 552 92 486 1.32e-65 223
Msa0352080 AT1G14970.3 32.933 416 259 6 180 578 2 414 2.55e-65 219
Msa0352080 AT3G26370.1 34.422 398 241 9 190 570 161 555 2.16e-64 221
Msa0352080 AT1G38065.2 33.738 412 230 10 190 570 29 428 8.05e-63 214
Msa0352080 AT1G38065.1 33.738 412 230 10 190 570 39 438 9.51e-63 214
Msa0352080 AT1G35510.1 31.435 439 275 8 156 577 134 563 2.97e-62 215
Msa0352080 AT2G01480.1 33.333 411 254 6 176 569 143 550 5.39e-62 214
Msa0352080 AT1G38131.1 33.738 412 230 10 190 570 158 557 9.40e-62 214
Msa0352080 AT1G04910.1 29.907 428 273 11 156 570 61 474 2.12e-60 209
Msa0352080 AT2G01480.2 33.875 369 229 4 176 529 143 511 2.86e-57 201
Msa0352080 AT1G62330.1 29.958 474 261 15 156 573 194 652 1.54e-55 199
Msa0352080 AT1G11990.1 28.599 521 327 15 87 571 78 589 2.02e-52 189
Msa0352080 AT1G11990.2 27.289 546 324 15 87 571 78 611 1.17e-47 176
Msa0352080 AT1G29200.4 31.567 453 253 14 166 570 50 493 1.67e-46 171
Msa0352080 AT1G29200.1 31.567 453 253 14 166 570 50 493 1.67e-46 171
Msa0352080 AT1G29200.2 31.567 453 253 14 166 570 166 609 5.05e-46 171
Msa0352080 AT1G29200.3 32.084 427 234 13 192 570 1 419 1.68e-45 166
Msa0352080 AT3G30300.2 32.990 291 178 6 190 464 103 392 1.06e-34 139
Msa0352080 AT3G30300.1 32.990 291 178 6 190 464 103 392 1.06e-34 139
Msa0352080 AT3G26370.2 35.165 182 104 4 190 358 161 341 8.97e-30 121
Msa0352080 AT3G03810.2 31.525 295 185 7 190 468 92 385 1.63e-29 124
Msa0352080 AT3G03810.1 31.525 295 185 7 190 468 92 385 1.63e-29 124
Msa0352080 AT1G52630.1 23.529 442 292 15 138 570 31 435 5.14e-29 120
Msa0352080 AT1G52630.2 24.138 377 246 13 203 570 2 347 1.34e-25 108

Find 142 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAATTCAAGTGTTATTT+TGG 0.098612 3_1:+19784771 Msa0352080:three_prime_UTR
TATCTTATGGTTGTTGTTTC+TGG 0.112650 3_1:+19781944 Msa0352080:CDS
ACATCTAATCACCTTTATTT+TGG 0.173467 3_1:+19784945 Msa0352080:three_prime_UTR
TTAGGAAACTCTTGGATTAA+TGG 0.176133 3_1:-19784150 None:intergenic
AGTGAAGAATTTAGAAAATA+AGG 0.209967 3_1:-19784545 None:intergenic
TTGTTTCTTGTTGGTTTCTT+TGG 0.214679 3_1:+19781542 Msa0352080:CDS
TGCTTTGATTGTAGTGAATT+TGG 0.215852 3_1:+19782398 Msa0352080:intron
GCCATCTCATGGAGGAAATA+TGG 0.218103 3_1:+19784287 Msa0352080:CDS
GTTGTTATTGCTAGGATTCT+TGG 0.223923 3_1:+19782004 Msa0352080:CDS
TAACTTCTTTGCATTGTTCT+TGG 0.233140 3_1:-19781387 None:intergenic
TCAACACTTATAATTGTTAT+TGG 0.237204 3_1:+19785009 Msa0352080:three_prime_UTR
TCAACCTAACTAAGTATTAA+TGG 0.239891 3_1:-19785129 None:intergenic
TAGGATTCTTGGTGCTTCTT+TGG 0.263675 3_1:+19782015 Msa0352080:CDS
GTGGTTCTTGAAGACTTCTT+TGG 0.272756 3_1:-19781482 None:intergenic
TATAAACCTTGTTTGAGTTT+TGG 0.282130 3_1:+19781872 Msa0352080:CDS
TTTGCAAGTCAATGTTATTT+GGG 0.282289 3_1:+19782048 Msa0352080:CDS
CTAACACAAGATTCTGGTTT+AGG 0.285401 3_1:+19784727 Msa0352080:three_prime_UTR
AAATATGGGCCGTGCAATTC+AGG 0.296659 3_1:+19784302 Msa0352080:CDS
TGGAAGAAACCAAATGGTTT+AGG 0.301407 3_1:+19781848 Msa0352080:CDS
TTCTTTGGTATGTTCAAGTT+TGG 0.303269 3_1:+19781557 Msa0352080:CDS
TAAGAATGGAAAAGGATGTT+TGG 0.316903 3_1:+19783551 Msa0352080:CDS
AACACTACTAAGACCAAGTT+TGG 0.317659 3_1:-19781663 None:intergenic
TTTCTTGCTTTGTTTCTTGT+TGG 0.320881 3_1:+19781533 Msa0352080:CDS
CAGGGTCATAGGGCATTTAC+TGG 0.325806 3_1:+19784482 Msa0352080:intron
TTGAAGAGAAGAAGATGAAA+TGG 0.332178 3_1:-19781444 None:intergenic
AAGCACTTCAATTTCCTTCC+AGG 0.337343 3_1:+19784823 Msa0352080:three_prime_UTR
TACACACTAACACAAGATTC+TGG 0.337783 3_1:+19784721 Msa0352080:three_prime_UTR
ACTCCCATTAATACTTAGTT+AGG 0.340251 3_1:+19785125 Msa0352080:three_prime_UTR
CTCAGAGACTATGTAATCTA+TGG 0.350975 3_1:-19784247 None:intergenic
AAGAATGGAAAAGGATGTTT+GGG 0.365024 3_1:+19783552 Msa0352080:CDS
TGTCGGTGCTTCAGGGTCAT+AGG 0.368740 3_1:+19784471 Msa0352080:intron
GGAAGCATGTGTCTCTTGTT+TGG 0.373927 3_1:-19784524 None:intergenic
CATGTGCAATTTCAAGCAAA+AGG 0.388265 3_1:+19781794 Msa0352080:CDS
CCTTGCTCTTCATTTAAGAA+TGG 0.389315 3_1:+19783537 Msa0352080:CDS
CAACCTAACTAAGTATTAAT+GGG 0.392952 3_1:-19785128 None:intergenic
CTTCTAATTGAAGACATGTT+TGG 0.394301 3_1:+19784887 Msa0352080:three_prime_UTR
GGTTTATATCCTAAACCATT+TGG 0.395737 3_1:-19781857 None:intergenic
GAGAATTACAACCATTTGTA+AGG 0.396343 3_1:+19784205 Msa0352080:CDS
TGTAAGGAAGGCTTCTCTAA+TGG 0.399798 3_1:+19784221 Msa0352080:CDS
ATAACATTGACTTGCAAAAC+AGG 0.403737 3_1:-19782043 None:intergenic
TTTATACAAAGTGAATGTAT+AGG 0.415577 3_1:+19785201 Msa0352080:three_prime_UTR
CTTGTCATTATATGTGTTGA+TGG 0.416358 3_1:-19782488 None:intergenic
GTGAGGACAGGTTGTCTCCC+TGG 0.417494 3_1:+19783574 Msa0352080:CDS
GAACTGCATCAAGACTCATT+AGG 0.418878 3_1:+19784599 Msa0352080:CDS
ACACGTAGTCACCAAAATAA+AGG 0.427153 3_1:-19784956 None:intergenic
AACTGCATCAAGACTCATTA+GGG 0.430097 3_1:+19784600 Msa0352080:CDS
TTGTTACCAAGTTCCTCAAC+TGG 0.432339 3_1:-19783481 None:intergenic
TCTCTGAAGAAGAGTTCAAC+AGG 0.437881 3_1:+19784567 Msa0352080:CDS
AGAGAAGCCTTCCTTACAAA+TGG 0.441636 3_1:-19784216 None:intergenic
GGATAGAAGAAAGTATCTTA+TGG 0.445638 3_1:+19781931 Msa0352080:CDS
CAAGAACAAGAACAAGAAAG+AGG 0.446863 3_1:+19781755 Msa0352080:CDS
TGAATGTTATCGAAGTTATG+AGG 0.455620 3_1:+19783713 Msa0352080:CDS
CTTGTGTTAGTGTGTAAATC+AGG 0.456028 3_1:-19784714 None:intergenic
GCTGAGCCAGTTGAGGAACT+TGG 0.456348 3_1:+19783475 Msa0352080:CDS
TCTTCATTTAAGAATGGAAA+AGG 0.458460 3_1:+19783543 Msa0352080:CDS
ATATCTTGCACGGATCCAAC+CGG 0.459748 3_1:-19782546 None:intergenic
TGAATTTCTTGTTCAGTGGT+AGG 0.463487 3_1:-19784758 None:intergenic
GCACTCAGGGACAGGATACT+TGG 0.464829 3_1:-19784663 None:intergenic
CTTATGGTTGTTGTTTCTGG+TGG 0.465215 3_1:+19781947 Msa0352080:CDS
TTCATTATTATGAATACTTG+TGG 0.467258 3_1:+19785259 Msa0352080:three_prime_UTR
TGGGCTGGAGGGAAACCATT+GGG 0.467264 3_1:+19784108 Msa0352080:CDS
ACGTGTCACTGTCGTGTGTT+TGG 0.467810 3_1:+19785037 Msa0352080:three_prime_UTR
TTTGAGGAAATGAGGTATCA+GGG 0.468647 3_1:-19781586 None:intergenic
AAGGATGTTTGGGTGAGGAC+AGG 0.469149 3_1:+19783562 Msa0352080:CDS
AAGGAAGATCTTGCCTTGCC+AGG 0.480516 3_1:+19784183 Msa0352080:CDS
ATTACAACCATTTGTAAGGA+AGG 0.482613 3_1:+19784209 Msa0352080:CDS
CAAAGACCAGAGCTCTTGAC+TGG 0.483694 3_1:+19783640 Msa0352080:CDS
ATAAGTGTTGATGCCGGTCT+CGG 0.484933 3_1:-19784997 None:intergenic
ACAAATGGTTGTAATTCTCC+TGG 0.488364 3_1:-19784201 None:intergenic
GATCTCCCAGTCAAGAGCTC+TGG 0.488930 3_1:-19783646 None:intergenic
TTATGGTTGTTGTTTCTGGT+GGG 0.490217 3_1:+19781948 Msa0352080:CDS
CCATCTCATGGAGGAAATAT+GGG 0.491947 3_1:+19784288 Msa0352080:CDS
GTCGGTGCTTCAGGGTCATA+GGG 0.514514 3_1:+19784472 Msa0352080:intron
ATGTTATTTGGGGTGATGAA+AGG 0.517325 3_1:+19782059 Msa0352080:CDS
AGCACTTCAATTTCCTTCCA+GGG 0.518471 3_1:+19784824 Msa0352080:three_prime_UTR
GAATTTCTTGTTCAGTGGTA+GGG 0.519084 3_1:-19784757 None:intergenic
TTGGGCTGGAGGGAAACCAT+TGG 0.519413 3_1:+19784107 Msa0352080:CDS
ATGGAGTTTATGATTTGTGA+TGG 0.526571 3_1:-19781425 None:intergenic
TCACATTCTCTGAAACTCAA+TGG 0.529041 3_1:+19781358 Msa0352080:exon
CACTTCATGCTACTCCCGGT+TGG 0.529254 3_1:+19782531 Msa0352080:CDS
TTTAGGTTACTGAAAGCTCT+AGG 0.530891 3_1:+19784060 Msa0352080:intron
AGTGGAGGCCTTCCTTCCAC+TGG 0.535806 3_1:-19782512 None:intergenic
ATGAAGCATTGACACAAATA+CGG 0.535823 3_1:-19785063 None:intergenic
TTGCACATGCACTCAGGGAC+AGG 0.536508 3_1:-19784671 None:intergenic
CTTGGACTCGAGGCTTTCAA+AGG 0.536650 3_1:+19783067 Msa0352080:CDS
TTAATAACCTCGTCGTACTC+AGG 0.537386 3_1:-19783604 None:intergenic
TTTCAAGCAAAAGGGTCTAG+TGG 0.540471 3_1:+19781803 Msa0352080:CDS
ATGTGCAATTTCAAGCAAAA+GGG 0.544157 3_1:+19781795 Msa0352080:CDS
TTATAGGAGACAAAGTGAAA+AGG 0.548920 3_1:+19781901 Msa0352080:CDS
TCTTCAGAAGCTTCGTTGCA+AGG 0.550451 3_1:+19783103 Msa0352080:CDS
AGAGTTCAACAGGATTATCA+AGG 0.552469 3_1:+19784577 Msa0352080:CDS
CCTCCACTTCATGCTACTCC+CGG 0.552569 3_1:+19782527 Msa0352080:CDS
ATTAATGGGAGTACACCTGC+AGG 0.553786 3_1:-19785114 None:intergenic
CGAAGCTTCTGAAGATCAGA+AGG 0.555068 3_1:-19783095 None:intergenic
TCTTGATGAATCATTGAGCA+TGG 0.555532 3_1:-19781611 None:intergenic
TTGATGCTGTTGTTATTGCT+AGG 0.555554 3_1:+19781996 Msa0352080:CDS
CTCTTCTGAGATATCTTGCA+CGG 0.560668 3_1:-19782556 None:intergenic
ATAACTTCGATAACATTCAA+AGG 0.562246 3_1:-19783709 None:intergenic
TGGAAAAGGATGTTTGGGTG+AGG 0.564526 3_1:+19783557 Msa0352080:CDS
CCCATATTTCCTCCATGAGA+TGG 0.564743 3_1:-19784288 None:intergenic
TCATCATTGCACATGCACTC+AGG 0.566648 3_1:-19784677 None:intergenic
CTTAAATGAAGAGCAAGGTA+AGG 0.569568 3_1:-19783532 None:intergenic
GAAATTGAAGTGCTTCCAAA+GGG 0.572256 3_1:-19784815 None:intergenic
TGACAAGACCAGTGGAAGGA+AGG 0.573045 3_1:+19782504 Msa0352080:CDS
TCATGTCTAGTGTCCGAGAC+CGG 0.575431 3_1:+19784984 Msa0352080:three_prime_UTR
AAGATTTGCTGAGCCAGTTG+AGG 0.575476 3_1:+19783468 Msa0352080:CDS
TACCGGTGTCATGTCCGTCT+CGG 0.579238 3_1:-19784913 None:intergenic
GGAAATTGAAGTGCTTCCAA+AGG 0.583777 3_1:-19784816 None:intergenic
CATCATTGCACATGCACTCA+GGG 0.585058 3_1:-19784676 None:intergenic
GCAGAAAGAATGAAAAGCAA+AGG 0.585126 3_1:+19783508 Msa0352080:CDS
CACTTGAATTTCTTGTTCAG+TGG 0.585738 3_1:-19784762 None:intergenic
CCATTCTTAAATGAAGAGCA+AGG 0.589706 3_1:-19783537 None:intergenic
CCACTCTCACATCATTTGCA+AGG 0.590073 3_1:-19782454 None:intergenic
CATTAGGGCAGCCAGAGCTA+AGG 0.591137 3_1:+19784615 Msa0352080:CDS
TAGAAGTGTCGATGCTACAT+AGG 0.593043 3_1:-19784870 None:intergenic
GGGATGTATGTGTAAAAGAA+TGG 0.596514 3_1:-19785093 None:intergenic
TGGTTGTAATTCTCCTGGCA+AGG 0.596530 3_1:-19784196 None:intergenic
CAACCGGGAGTAGCATGAAG+TGG 0.597704 3_1:-19782530 None:intergenic
TCGTACTCAGGACTTAGACC+AGG 0.598775 3_1:-19783592 None:intergenic
ACAATTATAAGTGTTGATGC+CGG 0.603765 3_1:-19785003 None:intergenic
GCACTTCAATTTCCTTCCAG+GGG 0.606283 3_1:+19784825 Msa0352080:three_prime_UTR
TTAGATGTAATAAAATGTAC+CGG 0.612293 3_1:-19784930 None:intergenic
TATCTTGCACGGATCCAACC+GGG 0.613488 3_1:-19782545 None:intergenic
CACTTCAATTTCCTTCCAGG+GGG 0.614929 3_1:+19784826 Msa0352080:three_prime_UTR
GACATGTTTGGTGTCCGAGA+CGG 0.620081 3_1:+19784899 Msa0352080:three_prime_UTR
ACTATGCAGTTCAATAGAGA+AGG 0.620483 3_1:+19783026 Msa0352080:intron
AAAGACCAGAGCTCTTGACT+GGG 0.628650 3_1:+19783641 Msa0352080:CDS
TGTTAGTGTGTAAATCAGGA+TGG 0.637167 3_1:-19784710 None:intergenic
CCTTGCAAATGATGTGAGAG+TGG 0.638538 3_1:+19782454 Msa0352080:CDS
CGTACTCAGGACTTAGACCA+GGG 0.645275 3_1:-19783591 None:intergenic
ACAATCATACCTGAATTGCA+CGG 0.655256 3_1:-19784311 None:intergenic
TCATTACCAAAACTCAAACA+AGG 0.655909 3_1:-19781878 None:intergenic
CCGGGAGTAGCATGAAGTGG+AGG 0.662229 3_1:-19782527 None:intergenic
TTGCAAGTCAATGTTATTTG+GGG 0.663997 3_1:+19782049 Msa0352080:CDS
GTCCGAGACGGACATGACAC+CGG 0.665091 3_1:+19784911 Msa0352080:three_prime_UTR
ACATATAATGACAAGACCAG+TGG 0.677823 3_1:+19782496 Msa0352080:CDS
ATAATGACAAGACCAGTGGA+AGG 0.679368 3_1:+19782500 Msa0352080:CDS
TTAATGGGAGTACACCTGCA+GGG 0.695520 3_1:-19785113 None:intergenic
CTGGTGGGATGAATCAACAG+AGG 0.721624 3_1:+19781963 Msa0352080:CDS
GCTGGAGGGAAACCATTGGG+TGG 0.722830 3_1:+19784111 Msa0352080:CDS
TCACCAGAAAATCAACACTG+TGG 0.743644 3_1:+19781510 Msa0352080:CDS
TCTAAGTCCTGAGTACGACG+AGG 0.769271 3_1:+19783597 Msa0352080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACAAATAATGAAGAAAAA+AGG - chr3_1:19782368-19782387 None:intergenic 15.0%
!! ATCATATATAATGAGTAAAA+GGG - chr3_1:19782995-19783014 None:intergenic 15.0%
!! TATCATATATAATGAGTAAA+AGG - chr3_1:19782996-19783015 None:intergenic 15.0%
!!! TGTTTTTCTCAAATTATTAT+AGG + chr3_1:19783903-19783922 Msa0352080:intron 15.0%
!! AAAAGATGCAAAAATTTATT+GGG + chr3_1:19784089-19784108 Msa0352080:CDS 15.0%
!! ATGTAATTGTATGACTTTAA+TGG + chr3_1:19782341-19782360 Msa0352080:intron 20.0%
!! TTGATTGTAACAATATGTTT+CGG + chr3_1:19782753-19782772 Msa0352080:intron 20.0%
!!! AAAGTTTCTTCTTTTCTTTA+TGG + chr3_1:19783132-19783151 Msa0352080:intron 20.0%
!!! ATGTTTTTGGTTTCATATTT+AGG + chr3_1:19784043-19784062 Msa0352080:intron 20.0%
!!! CAATAAATTTTTGCATCTTT+TGG - chr3_1:19784090-19784109 None:intergenic 20.0%
!! CAAAAGATGCAAAAATTTAT+TGG + chr3_1:19784088-19784107 Msa0352080:CDS 20.0%
!!! GTTTCCTAATTTTTACAATA+AGG + chr3_1:19784164-19784183 Msa0352080:CDS 20.0%
!! TCTTCCTTATTGTAAAAATT+AGG - chr3_1:19784171-19784190 None:intergenic 20.0%
!! AGTGAAGAATTTAGAAAATA+AGG - chr3_1:19784548-19784567 None:intergenic 20.0%
!!! AAGAAATTCAAGTGTTATTT+TGG + chr3_1:19784771-19784790 Msa0352080:three_prime_UTR 20.0%
!! TTAGATGTAATAAAATGTAC+CGG - chr3_1:19784933-19784952 None:intergenic 20.0%
!! TCAACACTTATAATTGTTAT+TGG + chr3_1:19785009-19785028 Msa0352080:three_prime_UTR 20.0%
!! TTTATACAAAGTGAATGTAT+AGG + chr3_1:19785201-19785220 Msa0352080:three_prime_UTR 20.0%
!! TTCATTATTATGAATACTTG+TGG + chr3_1:19785259-19785278 Msa0352080:three_prime_UTR 20.0%
!!! TATAAACCTTGTTTGAGTTT+TGG + chr3_1:19781872-19781891 Msa0352080:CDS 25.0%
!!! TGAGTTTTGGTAATGATTAT+AGG + chr3_1:19781885-19781904 Msa0352080:CDS 25.0%
!! TTTTGCAAGTCAATGTTATT+TGG + chr3_1:19782047-19782066 Msa0352080:CDS 25.0%
!! TTTGCAAGTCAATGTTATTT+GGG + chr3_1:19782048-19782067 Msa0352080:CDS 25.0%
! TGAACAAACACATCATATAT+AGG - chr3_1:19782221-19782240 None:intergenic 25.0%
! TTGTCTGAAAATGACATATA+TGG - chr3_1:19782668-19782687 None:intergenic 25.0%
!!! ATATATGTCATTTTCAGACA+AGG + chr3_1:19782667-19782686 Msa0352080:intron 25.0%
! ACCGAAATTAATATAATCAG+AGG + chr3_1:19782849-19782868 Msa0352080:intron 25.0%
! GCCTCTGATTATATTAATTT+CGG - chr3_1:19782853-19782872 None:intergenic 25.0%
! TGCATAATATTCATCTTGTT+TGG + chr3_1:19782935-19782954 Msa0352080:intron 25.0%
!!! GATTTTGAGAAATTGAGTTA+GGG - chr3_1:19783246-19783265 None:intergenic 25.0%
! CTAACTCAATTTCTCAAAAT+CGG + chr3_1:19783245-19783264 Msa0352080:intron 25.0%
! TCTTCATTTAAGAATGGAAA+AGG + chr3_1:19783543-19783562 Msa0352080:CDS 25.0%
! ATAACTTCGATAACATTCAA+AGG - chr3_1:19783712-19783731 None:intergenic 25.0%
! ATAAGTGACCTATTGTAAAA+GGG - chr3_1:19783801-19783820 None:intergenic 25.0%
!! GATTTCATGATAGATGTTTT+TGG + chr3_1:19784030-19784049 Msa0352080:intron 25.0%
! TGTAAAAATTAGGAAACTCT+TGG - chr3_1:19784161-19784180 None:intergenic 25.0%
!!! AATTCAAGTGTTATTTTGGA+TGG + chr3_1:19784775-19784794 Msa0352080:three_prime_UTR 25.0%
!!! ACATCTAATCACCTTTATTT+TGG + chr3_1:19784945-19784964 Msa0352080:three_prime_UTR 25.0%
! CAACCTAACTAAGTATTAAT+GGG - chr3_1:19785131-19785150 None:intergenic 25.0%
! TCAACCTAACTAAGTATTAA+TGG - chr3_1:19785132-19785151 None:intergenic 25.0%
TAACTTCTTTGCATTGTTCT+TGG - chr3_1:19781390-19781409 None:intergenic 30.0%
! ATGGAGTTTATGATTTGTGA+TGG - chr3_1:19781428-19781447 None:intergenic 30.0%
TTGAAGAGAAGAAGATGAAA+TGG - chr3_1:19781447-19781466 None:intergenic 30.0%
!! TTTCTTGCTTTGTTTCTTGT+TGG + chr3_1:19781533-19781552 Msa0352080:CDS 30.0%
!! TTGTTTCTTGTTGGTTTCTT+TGG + chr3_1:19781542-19781561 Msa0352080:CDS 30.0%
! TTCTTTGGTATGTTCAAGTT+TGG + chr3_1:19781557-19781576 Msa0352080:CDS 30.0%
! CATCATTCATTTTCCAAACT+TGG + chr3_1:19781650-19781669 Msa0352080:CDS 30.0%
ATGTGCAATTTCAAGCAAAA+GGG + chr3_1:19781795-19781814 Msa0352080:CDS 30.0%
! ATGAGAAAAAGAGTGAGTTT+TGG + chr3_1:19781828-19781847 Msa0352080:CDS 30.0%
GGTTTATATCCTAAACCATT+TGG - chr3_1:19781860-19781879 None:intergenic 30.0%
TCATTACCAAAACTCAAACA+AGG - chr3_1:19781881-19781900 None:intergenic 30.0%
TTATAGGAGACAAAGTGAAA+AGG + chr3_1:19781901-19781920 Msa0352080:CDS 30.0%
!! ACAAAGTGAAAAGGTTTTGA+AGG + chr3_1:19781910-19781929 Msa0352080:CDS 30.0%
!! GGATAGAAGAAAGTATCTTA+TGG + chr3_1:19781931-19781950 Msa0352080:CDS 30.0%
!! TATCTTATGGTTGTTGTTTC+TGG + chr3_1:19781944-19781963 Msa0352080:CDS 30.0%
!! ATAACATTGACTTGCAAAAC+AGG - chr3_1:19782046-19782065 None:intergenic 30.0%
! TTGCAAGTCAATGTTATTTG+GGG + chr3_1:19782049-19782068 Msa0352080:CDS 30.0%
! AATGTTTCTGTTCATGTAAG+TGG + chr3_1:19782286-19782305 Msa0352080:intron 30.0%
TGCTTTGATTGTAGTGAATT+TGG + chr3_1:19782398-19782417 Msa0352080:intron 30.0%
CTTGTCATTATATGTGTTGA+TGG - chr3_1:19782491-19782510 None:intergenic 30.0%
!! AAGAATAGTTCACTGCTTTT+TGG + chr3_1:19782580-19782599 Msa0352080:intron 30.0%
ATTCCACAAATGTAGATTGT+AGG - chr3_1:19782641-19782660 None:intergenic 30.0%
! CATCTTGTTTGGAAAATGTA+AGG + chr3_1:19782946-19782965 Msa0352080:intron 30.0%
! ATGCTATTTGTCAAAATACG+AGG + chr3_1:19783176-19783195 Msa0352080:intron 30.0%
!! CGATTTTGAGAAATTGAGTT+AGG - chr3_1:19783247-19783266 None:intergenic 30.0%
! AGTCTTTGTAAGTATTTTCG+TGG - chr3_1:19783370-19783389 None:intergenic 30.0%
! AAGTTGTCGTCTAAATTTTC+AGG + chr3_1:19783429-19783448 Msa0352080:intron 30.0%
TAAGAATGGAAAAGGATGTT+TGG + chr3_1:19783551-19783570 Msa0352080:CDS 30.0%
AAGAATGGAAAAGGATGTTT+GGG + chr3_1:19783552-19783571 Msa0352080:CDS 30.0%
GACTTACCATCAAAGAAAAA+TGG + chr3_1:19783675-19783694 Msa0352080:CDS 30.0%
TGAATGTTATCGAAGTTATG+AGG + chr3_1:19783713-19783732 Msa0352080:CDS 30.0%
TTGTAAAAGGGCTACTAAAT+AGG - chr3_1:19783789-19783808 None:intergenic 30.0%
! TTTAGTAGCCCTTTTACAAT+AGG + chr3_1:19783790-19783809 Msa0352080:intron 30.0%
CATAAGTGACCTATTGTAAA+AGG - chr3_1:19783802-19783821 None:intergenic 30.0%
CTATATTCTAATAGCAGACT+TGG - chr3_1:19783983-19784002 None:intergenic 30.0%
TTAGGAAACTCTTGGATTAA+TGG - chr3_1:19784153-19784172 None:intergenic 30.0%
GAGAATTACAACCATTTGTA+AGG + chr3_1:19784205-19784224 Msa0352080:CDS 30.0%
ATTACAACCATTTGTAAGGA+AGG + chr3_1:19784209-19784228 Msa0352080:CDS 30.0%
AGCTAAGGACTAACAAAAAT+GGG + chr3_1:19784630-19784649 Msa0352080:CDS 30.0%
CTTCTAATTGAAGACATGTT+TGG + chr3_1:19784887-19784906 Msa0352080:three_prime_UTR 30.0%
!! ACAATTATAAGTGTTGATGC+CGG - chr3_1:19785006-19785025 None:intergenic 30.0%
!! ATGAAGCATTGACACAAATA+CGG - chr3_1:19785066-19785085 None:intergenic 30.0%
ACTCCCATTAATACTTAGTT+AGG + chr3_1:19785125-19785144 Msa0352080:three_prime_UTR 30.0%
!! TCACATTCTCTGAAACTCAA+TGG + chr3_1:19781358-19781377 Msa0352080:exon 35.0%
!!! TGTTGATTTTCTGGTGAAGA+TGG - chr3_1:19781507-19781526 None:intergenic 35.0%
!!! AAACCACAGTGTTGATTTTC+TGG - chr3_1:19781516-19781535 None:intergenic 35.0%
! TTTGAGGAAATGAGGTATCA+GGG - chr3_1:19781589-19781608 None:intergenic 35.0%
!! TTTTGAGGAAATGAGGTATC+AGG - chr3_1:19781590-19781609 None:intergenic 35.0%
! ATCATTGAGCATGGTTTTTG+AGG - chr3_1:19781605-19781624 None:intergenic 35.0%
TCTTGATGAATCATTGAGCA+TGG - chr3_1:19781614-19781633 None:intergenic 35.0%
AACACTACTAAGACCAAGTT+TGG - chr3_1:19781666-19781685 None:intergenic 35.0%
CTTGCAAAAACTCGTCATTA+TGG - chr3_1:19781727-19781746 None:intergenic 35.0%
CAAGAACAAGAACAAGAAAG+AGG + chr3_1:19781755-19781774 Msa0352080:CDS 35.0%
! ACAAGAAAGAGGACAGTTTT+TGG + chr3_1:19781766-19781785 Msa0352080:CDS 35.0%
CATGTGCAATTTCAAGCAAA+AGG + chr3_1:19781794-19781813 Msa0352080:CDS 35.0%
!!! GAGTTTTGGAAGAAACCAAA+TGG + chr3_1:19781842-19781861 Msa0352080:CDS 35.0%
TGGAAGAAACCAAATGGTTT+AGG + chr3_1:19781848-19781867 Msa0352080:CDS 35.0%
!! TTATGGTTGTTGTTTCTGGT+GGG + chr3_1:19781948-19781967 Msa0352080:CDS 35.0%
! TTGATGCTGTTGTTATTGCT+AGG + chr3_1:19781996-19782015 Msa0352080:CDS 35.0%
! GTTGTTATTGCTAGGATTCT+TGG + chr3_1:19782004-19782023 Msa0352080:CDS 35.0%
! ATGTTATTTGGGGTGATGAA+AGG + chr3_1:19782059-19782078 Msa0352080:CDS 35.0%
ACATATAATGACAAGACCAG+TGG + chr3_1:19782496-19782515 Msa0352080:CDS 35.0%
GGACTCAAAATTATTCACAC+AGG - chr3_1:19782620-19782639 None:intergenic 35.0%
AGTCCTACAATCTACATTTG+TGG + chr3_1:19782635-19782654 Msa0352080:intron 35.0%
! TCATTTTCAGACAAGGTCAT+CGG + chr3_1:19782674-19782693 Msa0352080:intron 35.0%
! ATCTGAAGTGTTCGTTACAT+AGG + chr3_1:19782811-19782830 Msa0352080:intron 35.0%
CAACAAATTGGTAGGTACAA+GGG - chr3_1:19782878-19782897 None:intergenic 35.0%
AACAATTGCCTGCAACAAAT+TGG - chr3_1:19782890-19782909 None:intergenic 35.0%
TTGAACTGCATAGTACAACA+AGG - chr3_1:19783020-19783039 None:intergenic 35.0%
ACTATGCAGTTCAATAGAGA+AGG + chr3_1:19783026-19783045 Msa0352080:intron 35.0%
TGCGTTCGTGAAAATAAGTT+AGG + chr3_1:19783220-19783239 Msa0352080:intron 35.0%
TCGTATAAGACCATATCATC+AGG + chr3_1:19783312-19783331 Msa0352080:intron 35.0%
TTTCACAATCTGCAATCACT+TGG - chr3_1:19783411-19783430 None:intergenic 35.0%
GCAGAAAGAATGAAAAGCAA+AGG + chr3_1:19783508-19783527 Msa0352080:CDS 35.0%
CTTAAATGAAGAGCAAGGTA+AGG - chr3_1:19783535-19783554 None:intergenic 35.0%
CCATTCTTAAATGAAGAGCA+AGG - chr3_1:19783540-19783559 None:intergenic 35.0%
CCTTGCTCTTCATTTAAGAA+TGG + chr3_1:19783537-19783556 Msa0352080:CDS 35.0%
TACCATCAAAGAAAAATGGC+TGG + chr3_1:19783679-19783698 Msa0352080:CDS 35.0%
TTGGACATGAAACACAAACA+CGG - chr3_1:19783964-19783983 None:intergenic 35.0%
! TTTAGGTTACTGAAAGCTCT+AGG + chr3_1:19784060-19784079 Msa0352080:intron 35.0%
GATGCAAAAATTTATTGGGC+TGG + chr3_1:19784093-19784112 Msa0352080:CDS 35.0%
! CAAAAATTTATTGGGCTGGA+GGG + chr3_1:19784097-19784116 Msa0352080:CDS 35.0%
ACAAATGGTTGTAATTCTCC+TGG - chr3_1:19784204-19784223 None:intergenic 35.0%
CTCAGAGACTATGTAATCTA+TGG - chr3_1:19784250-19784269 None:intergenic 35.0%
ACAATCATACCTGAATTGCA+CGG - chr3_1:19784314-19784333 None:intergenic 35.0%
! GTCTGATGATTTTGTCTTGT+CGG + chr3_1:19784454-19784473 Msa0352080:intron 35.0%
AGAGTTCAACAGGATTATCA+AGG + chr3_1:19784577-19784596 Msa0352080:CDS 35.0%
AACTGCATCAAGACTCATTA+GGG + chr3_1:19784600-19784619 Msa0352080:CDS 35.0%
! TTTTTGTTAGTCCTTAGCTC+TGG - chr3_1:19784629-19784648 None:intergenic 35.0%
GAGCTAAGGACTAACAAAAA+TGG + chr3_1:19784629-19784648 Msa0352080:CDS 35.0%
TGTTAGTGTGTAAATCAGGA+TGG - chr3_1:19784713-19784732 None:intergenic 35.0%
CTTGTGTTAGTGTGTAAATC+AGG - chr3_1:19784717-19784736 None:intergenic 35.0%
TACACACTAACACAAGATTC+TGG + chr3_1:19784721-19784740 Msa0352080:three_prime_UTR 35.0%
!! CTAACACAAGATTCTGGTTT+AGG + chr3_1:19784727-19784746 Msa0352080:three_prime_UTR 35.0%
GAATTTCTTGTTCAGTGGTA+GGG - chr3_1:19784760-19784779 None:intergenic 35.0%
TGAATTTCTTGTTCAGTGGT+AGG - chr3_1:19784761-19784780 None:intergenic 35.0%
CACTTGAATTTCTTGTTCAG+TGG - chr3_1:19784765-19784784 None:intergenic 35.0%
CTTCCAAAGGGATCAAAAAA+TGG - chr3_1:19784806-19784825 None:intergenic 35.0%
! GAAATTGAAGTGCTTCCAAA+GGG - chr3_1:19784818-19784837 None:intergenic 35.0%
ACACGTAGTCACCAAAATAA+AGG - chr3_1:19784959-19784978 None:intergenic 35.0%
GGGATGTATGTGTAAAAGAA+TGG - chr3_1:19785096-19785115 None:intergenic 35.0%
GTGGTTCTTGAAGACTTCTT+TGG - chr3_1:19781485-19781504 None:intergenic 40.0%
!! TGATTTTCTGGTGAAGATGG+TGG - chr3_1:19781504-19781523 None:intergenic 40.0%
TCACCAGAAAATCAACACTG+TGG + chr3_1:19781510-19781529 Msa0352080:CDS 40.0%
!! GCATGGTTTTTGAGGAAATG+AGG - chr3_1:19781597-19781616 None:intergenic 40.0%
TTTCAAGCAAAAGGGTCTAG+TGG + chr3_1:19781803-19781822 Msa0352080:CDS 40.0%
!! CTTATGGTTGTTGTTTCTGG+TGG + chr3_1:19781947-19781966 Msa0352080:CDS 40.0%
!! TAGGATTCTTGGTGCTTCTT+TGG + chr3_1:19782015-19782034 Msa0352080:CDS 40.0%
! GCACTGATACTTCACATTGA+AGG + chr3_1:19782157-19782176 Msa0352080:intron 40.0%
!! TGGTGGTGTCTAACATGTTT+TGG + chr3_1:19782186-19782205 Msa0352080:intron 40.0%
ATAATGACAAGACCAGTGGA+AGG + chr3_1:19782500-19782519 Msa0352080:CDS 40.0%
!! CTCTTCTGAGATATCTTGCA+CGG - chr3_1:19782559-19782578 None:intergenic 40.0%
GCAACAAATTGGTAGGTACA+AGG - chr3_1:19782879-19782898 None:intergenic 40.0%
!! TGTACCTACCAATTTGTTGC+AGG + chr3_1:19782879-19782898 Msa0352080:intron 40.0%
ATTGCCTGCAACAAATTGGT+AGG - chr3_1:19782886-19782905 None:intergenic 40.0%
!!! GAAGGTGTTTTGCTTTTACG+TGG + chr3_1:19783044-19783063 Msa0352080:CDS 40.0%
!! TGTTTTGCTTTTACGTGGCT+TGG + chr3_1:19783049-19783068 Msa0352080:CDS 40.0%
TCTCACATCACCTGATGATA+TGG - chr3_1:19783325-19783344 None:intergenic 40.0%
! ATTTTCGTGGCTTTTCTTCG+CGG - chr3_1:19783357-19783376 None:intergenic 40.0%
TTGTTACCAAGTTCCTCAAC+TGG - chr3_1:19783484-19783503 None:intergenic 40.0%
TTAATAACCTCGTCGTACTC+AGG - chr3_1:19783607-19783626 None:intergenic 40.0%
!!! GTCCAGCCATTTTTCTTTGA+TGG - chr3_1:19783684-19783703 None:intergenic 40.0%
! GCAAAAATTTATTGGGCTGG+AGG + chr3_1:19784096-19784115 Msa0352080:CDS 40.0%
! AAAGCTTCTTTTCCACCCAA+TGG - chr3_1:19784126-19784145 None:intergenic 40.0%
AGAGAAGCCTTCCTTACAAA+TGG - chr3_1:19784219-19784238 None:intergenic 40.0%
TGTAAGGAAGGCTTCTCTAA+TGG + chr3_1:19784221-19784240 Msa0352080:CDS 40.0%
! GATGTTTTCATGCCATCTCA+TGG + chr3_1:19784276-19784295 Msa0352080:CDS 40.0%
CCATCTCATGGAGGAAATAT+GGG + chr3_1:19784288-19784307 Msa0352080:CDS 40.0%
GTATGATTGTCGTTCGACAA+GGG + chr3_1:19784324-19784343 Msa0352080:intron 40.0%
TGTCAGATACTAACACGAGT+TGG - chr3_1:19784363-19784382 None:intergenic 40.0%
! TCTCTGAAGAAGAGTTCAAC+AGG + chr3_1:19784567-19784586 Msa0352080:CDS 40.0%
GAACTGCATCAAGACTCATT+AGG + chr3_1:19784599-19784618 Msa0352080:CDS 40.0%
!!! GCTCCATTTTTTGATCCCTT+TGG + chr3_1:19784800-19784819 Msa0352080:three_prime_UTR 40.0%
! GGAAATTGAAGTGCTTCCAA+AGG - chr3_1:19784819-19784838 None:intergenic 40.0%
AAGCACTTCAATTTCCTTCC+AGG + chr3_1:19784823-19784842 Msa0352080:three_prime_UTR 40.0%
AGCACTTCAATTTCCTTCCA+GGG + chr3_1:19784824-19784843 Msa0352080:three_prime_UTR 40.0%
!! TAGAAGTGTCGATGCTACAT+AGG - chr3_1:19784873-19784892 None:intergenic 40.0%
! TTTTACACATACATCCCTGC+AGG + chr3_1:19785099-19785118 Msa0352080:three_prime_UTR 40.0%
! CTTCACATTGAAGGCGTGTT+TGG + chr3_1:19782166-19782185 Msa0352080:intron 45.0%
CCACTCTCACATCATTTGCA+AGG - chr3_1:19782457-19782476 None:intergenic 45.0%
CCTTGCAAATGATGTGAGAG+TGG + chr3_1:19782454-19782473 Msa0352080:CDS 45.0%
ATATCTTGCACGGATCCAAC+CGG - chr3_1:19782549-19782568 None:intergenic 45.0%
CTTCAGATTGAAGACGCGTT+TGG - chr3_1:19782799-19782818 None:intergenic 45.0%
! CGAAGCTTCTGAAGATCAGA+AGG - chr3_1:19783098-19783117 None:intergenic 45.0%
TCTTCAGAAGCTTCGTTGCA+AGG + chr3_1:19783103-19783122 Msa0352080:CDS 45.0%
!! AAGATTTGCTGAGCCAGTTG+AGG + chr3_1:19783468-19783487 Msa0352080:CDS 45.0%
TGGAAAAGGATGTTTGGGTG+AGG + chr3_1:19783557-19783576 Msa0352080:CDS 45.0%
AAAGACCAGAGCTCTTGACT+GGG + chr3_1:19783641-19783660 Msa0352080:CDS 45.0%
TGGTTGTAATTCTCCTGGCA+AGG - chr3_1:19784199-19784218 None:intergenic 45.0%
! GTTTTCATGCCATCTCATGG+AGG + chr3_1:19784279-19784298 Msa0352080:CDS 45.0%
GCCATCTCATGGAGGAAATA+TGG + chr3_1:19784287-19784306 Msa0352080:CDS 45.0%
CCCATATTTCCTCCATGAGA+TGG - chr3_1:19784291-19784310 None:intergenic 45.0%
AAATATGGGCCGTGCAATTC+AGG + chr3_1:19784302-19784321 Msa0352080:CDS 45.0%
GGTATGATTGTCGTTCGACA+AGG + chr3_1:19784323-19784342 Msa0352080:intron 45.0%
!! TTTTGTCTTGTCGGTGCTTC+AGG + chr3_1:19784463-19784482 Msa0352080:intron 45.0%
! TTTGTCTTGTCGGTGCTTCA+GGG + chr3_1:19784464-19784483 Msa0352080:intron 45.0%
! GGAAGCATGTGTCTCTTGTT+TGG - chr3_1:19784527-19784546 None:intergenic 45.0%
CATCATTGCACATGCACTCA+GGG - chr3_1:19784679-19784698 None:intergenic 45.0%
TCATCATTGCACATGCACTC+AGG - chr3_1:19784680-19784699 None:intergenic 45.0%
GCACTTCAATTTCCTTCCAG+GGG + chr3_1:19784825-19784844 Msa0352080:three_prime_UTR 45.0%
CACTTCAATTTCCTTCCAGG+GGG + chr3_1:19784826-19784845 Msa0352080:three_prime_UTR 45.0%
TCTTATAGTTTCCCCCTGGA+AGG - chr3_1:19784840-19784859 None:intergenic 45.0%
GAACTCTTATAGTTTCCCCC+TGG - chr3_1:19784844-19784863 None:intergenic 45.0%
!! ATAAGTGTTGATGCCGGTCT+CGG - chr3_1:19785000-19785019 None:intergenic 45.0%
! TTAATGGGAGTACACCTGCA+GGG - chr3_1:19785116-19785135 None:intergenic 45.0%
! ATTAATGGGAGTACACCTGC+AGG - chr3_1:19785117-19785136 None:intergenic 45.0%
CTGGTGGGATGAATCAACAG+AGG + chr3_1:19781963-19781982 Msa0352080:CDS 50.0%
! CACATTGAAGGCGTGTTTGG+TGG + chr3_1:19782169-19782188 Msa0352080:intron 50.0%
TGACAAGACCAGTGGAAGGA+AGG + chr3_1:19782504-19782523 Msa0352080:CDS 50.0%
TATCTTGCACGGATCCAACC+GGG - chr3_1:19782548-19782567 None:intergenic 50.0%
!! TTTTACGTGGCTTGGACTCG+AGG + chr3_1:19783057-19783076 Msa0352080:CDS 50.0%
CTTGGACTCGAGGCTTTCAA+AGG + chr3_1:19783067-19783086 Msa0352080:CDS 50.0%
AAGGATGTTTGGGTGAGGAC+AGG + chr3_1:19783562-19783581 Msa0352080:CDS 50.0%
CGTACTCAGGACTTAGACCA+GGG - chr3_1:19783594-19783613 None:intergenic 50.0%
TCGTACTCAGGACTTAGACC+AGG - chr3_1:19783595-19783614 None:intergenic 50.0%
TCTAAGTCCTGAGTACGACG+AGG + chr3_1:19783597-19783616 Msa0352080:CDS 50.0%
CAAAGACCAGAGCTCTTGAC+TGG + chr3_1:19783640-19783659 Msa0352080:CDS 50.0%
!! TCACTTATGCAGCACCGATG+TGG + chr3_1:19783813-19783832 Msa0352080:intron 50.0%
!! CACTTATGCAGCACCGATGT+GGG + chr3_1:19783814-19783833 Msa0352080:intron 50.0%
CTCATGATGACCACCCACAT+CGG - chr3_1:19783830-19783849 None:intergenic 50.0%
CACGGACACATGACATGACA+TGG - chr3_1:19783946-19783965 None:intergenic 50.0%
AAGGAAGATCTTGCCTTGCC+AGG + chr3_1:19784183-19784202 Msa0352080:CDS 50.0%
! CAGGGTCATAGGGCATTTAC+TGG + chr3_1:19784482-19784501 Msa0352080:intron 50.0%
!! GACATGTTTGGTGTCCGAGA+CGG + chr3_1:19784899-19784918 Msa0352080:three_prime_UTR 50.0%
TCATGTCTAGTGTCCGAGAC+CGG + chr3_1:19784984-19785003 Msa0352080:three_prime_UTR 50.0%
! ACGTGTCACTGTCGTGTGTT+TGG + chr3_1:19785037-19785056 Msa0352080:three_prime_UTR 50.0%
CCTCCACTTCATGCTACTCC+CGG + chr3_1:19782527-19782546 Msa0352080:CDS 55.0%
CAACCGGGAGTAGCATGAAG+TGG - chr3_1:19782533-19782552 None:intergenic 55.0%
CACTTCATGCTACTCCCGGT+TGG + chr3_1:19782531-19782550 Msa0352080:CDS 55.0%
GCTGAGCCAGTTGAGGAACT+TGG + chr3_1:19783475-19783494 Msa0352080:CDS 55.0%
GATCTCCCAGTCAAGAGCTC+TGG - chr3_1:19783649-19783668 None:intergenic 55.0%
!! TTATGCAGCACCGATGTGGG+TGG + chr3_1:19783817-19783836 Msa0352080:intron 55.0%
! TTGGGCTGGAGGGAAACCAT+TGG + chr3_1:19784107-19784126 Msa0352080:CDS 55.0%
! TGGGCTGGAGGGAAACCATT+GGG + chr3_1:19784108-19784127 Msa0352080:CDS 55.0%
! TGTCGGTGCTTCAGGGTCAT+AGG + chr3_1:19784471-19784490 Msa0352080:intron 55.0%
! GTCGGTGCTTCAGGGTCATA+GGG + chr3_1:19784472-19784491 Msa0352080:intron 55.0%
CATTAGGGCAGCCAGAGCTA+AGG + chr3_1:19784615-19784634 Msa0352080:CDS 55.0%
GCACTCAGGGACAGGATACT+TGG - chr3_1:19784666-19784685 None:intergenic 55.0%
TTGCACATGCACTCAGGGAC+AGG - chr3_1:19784674-19784693 None:intergenic 55.0%
!! TACCGGTGTCATGTCCGTCT+CGG - chr3_1:19784916-19784935 None:intergenic 55.0%
AGTGGAGGCCTTCCTTCCAC+TGG - chr3_1:19782515-19782534 None:intergenic 60.0%
CCGGGAGTAGCATGAAGTGG+AGG - chr3_1:19782530-19782549 None:intergenic 60.0%
GTGAGGACAGGTTGTCTCCC+TGG + chr3_1:19783574-19783593 Msa0352080:CDS 60.0%
GCTGGAGGGAAACCATTGGG+TGG + chr3_1:19784111-19784130 Msa0352080:CDS 60.0%
GTCCGAGACGGACATGACAC+CGG + chr3_1:19784911-19784930 Msa0352080:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 19781317 19785313 19781317 ID=Msa0352080;Name=Msa0352080
chr3_1 mRNA 19781317 19785313 19781317 ID=Msa0352080-mRNA-1;Parent=Msa0352080;Name=Msa0352080-mRNA-1;_AED=0.27;_eAED=0.27;_QI=60|1|1|1|1|1|6|595|578
chr3_1 exon 19781317 19782080 19781317 ID=Msa0352080-mRNA-1:exon:4632;Parent=Msa0352080-mRNA-1
chr3_1 exon 19782412 19782577 19782412 ID=Msa0352080-mRNA-1:exon:4633;Parent=Msa0352080-mRNA-1
chr3_1 exon 19783035 19783124 19783035 ID=Msa0352080-mRNA-1:exon:4634;Parent=Msa0352080-mRNA-1
chr3_1 exon 19783451 19783734 19783451 ID=Msa0352080-mRNA-1:exon:4635;Parent=Msa0352080-mRNA-1
chr3_1 exon 19784065 19784323 19784065 ID=Msa0352080-mRNA-1:exon:4636;Parent=Msa0352080-mRNA-1
chr3_1 exon 19784485 19785313 19784485 ID=Msa0352080-mRNA-1:exon:4637;Parent=Msa0352080-mRNA-1
chr3_1 five_prime_UTR 19781317 19781376 19781317 ID=Msa0352080-mRNA-1:five_prime_utr;Parent=Msa0352080-mRNA-1
chr3_1 CDS 19781377 19782080 19781377 ID=Msa0352080-mRNA-1:cds;Parent=Msa0352080-mRNA-1
chr3_1 CDS 19782412 19782577 19782412 ID=Msa0352080-mRNA-1:cds;Parent=Msa0352080-mRNA-1
chr3_1 CDS 19783035 19783124 19783035 ID=Msa0352080-mRNA-1:cds;Parent=Msa0352080-mRNA-1
chr3_1 CDS 19783451 19783734 19783451 ID=Msa0352080-mRNA-1:cds;Parent=Msa0352080-mRNA-1
chr3_1 CDS 19784065 19784323 19784065 ID=Msa0352080-mRNA-1:cds;Parent=Msa0352080-mRNA-1
chr3_1 CDS 19784485 19784718 19784485 ID=Msa0352080-mRNA-1:cds;Parent=Msa0352080-mRNA-1
chr3_1 three_prime_UTR 19784719 19785313 19784719 ID=Msa0352080-mRNA-1:three_prime_utr;Parent=Msa0352080-mRNA-1
Gene Sequence

>Msa0352080

ATGGCAAAATCCAAGAACAATGCAAAGAAGTTATCATACATATCAGTTCCATCACAAATCATAAACTCCATTTCATCTTCTTCTCTTCAATCTCTCATTGATTCTCCAAAGAAGTCTTCAAGAACCACCATCTTCACCAGAAAATCAACACTGTGGTTTCTTGCTTTGTTTCTTGTTGGTTTCTTTGGTATGTTCAAGTTTGGTTTCAACCCTGATACCTCATTTCCTCAAAAACCATGCTCAATGATTCATCAAGAGTTCTCAATATCAAATCATCATTCATTTTCCAAACTTGGTCTTAGTAGTGTTCTCTTGCAGAAAGAGAGAAAAACATCTTTGAAAAATGACCATAATGACGAGTTTTTGCAAGAACAAGAACAAGAACAAGAACAAGAAAGAGGACAGTTTTTGGTTTCTCATGTGCAATTTCAAGCAAAAGGGTCTAGTGGATATGAGAAAAAGAGTGAGTTTTGGAAGAAACCAAATGGTTTAGGATATAAACCTTGTTTGAGTTTTGGTAATGATTATAGGAGACAAAGTGAAAAGGTTTTGAAGGATAGAAGAAAGTATCTTATGGTTGTTGTTTCTGGTGGGATGAATCAACAGAGGAATCAGATTGTTGATGCTGTTGTTATTGCTAGGATTCTTGGTGCTTCTTTGGTTGTTCCTGTTTTGCAAGTCAATGTTATTTGGGGTGATGAAAGTGAATTTGGTGACATATTTGATCTAGAACACTTCAAAAGAGTCCTTGCAAATGATGTGAGAGTGGTTTCAGCATTGCCATCAACACATATAATGACAAGACCAGTGGAAGGAAGGCCTCCACTTCATGCTACTCCCGGTTGGATCCGTGCAAGATATCTCAGAAGATTCAATAGAGAAGGTGTTTTGCTTTTACGTGGCTTGGACTCGAGGCTTTCAAAGGATCTTCCTTCTGATCTTCAGAAGCTTCGTTGCAAGGTAGCTTTTAATGCATTAAGATTTGCTGAGCCAGTTGAGGAACTTGGTAACAAAATTGCAGAAAGAATGAAAAGCAAAGGACCTTACCTTGCTCTTCATTTAAGAATGGAAAAGGATGTTTGGGTGAGGACAGGTTGTCTCCCTGGTCTAAGTCCTGAGTACGACGAGGTTATTAACAATGAGAGAATACAAAGACCAGAGCTCTTGACTGGGAGATCAAACATGACTTACCATCAAAGAAAAATGGCTGGACTTTGTCCTTTGAATGTTATCGAAGTTATGAGGTTACTGAAAGCTCTAGGAGCTCCAAAAGATGCAAAAATTTATTGGGCTGGAGGGAAACCATTGGGTGGAAAAGAAGCTTTACTTCCATTAATCCAAGAGTTTCCTAATTTTTACAATAAGGAAGATCTTGCCTTGCCAGGAGAATTACAACCATTTGTAAGGAAGGCTTCTCTAATGGCTGCCATAGATTACATAGTCTCTGAGAAGAGTGATGTTTTCATGCCATCTCATGGAGGAAATATGGGCCGTGCAATTCAGGGTCATAGGGCATTTACTGGACACAAGAAGTATATAACTCCAAACAAGAGACACATGCTTCCTTATTTTCTAAATTCTTCACTCTCTGAAGAAGAGTTCAACAGGATTATCAAGGAACTGCATCAAGACTCATTAGGGCAGCCAGAGCTAAGGACTAACAAAAATGGGAGAGATGTTACCAAGTATCCTGTCCCTGAGTGCATGTGCAATGATGACTCAAATGCTCCATCCTGA
Protein sequence

>Msa0352080

MAKSKNNAKKLSYISVPSQIINSISSSSLQSLIDSPKKSSRTTIFTRKSTLWFLALFLVGFFGMFKFGFNPDTSFPQKPCSMIHQEFSISNHHSFSKLGLSSVLLQKERKTSLKNDHNDEFLQEQEQEQEQERGQFLVSHVQFQAKGSSGYEKKSEFWKKPNGLGYKPCLSFGNDYRRQSEKVLKDRRKYLMVVVSGGMNQQRNQIVDAVVIARILGASLVVPVLQVNVIWGDESEFGDIFDLEHFKRVLANDVRVVSALPSTHIMTRPVEGRPPLHATPGWIRARYLRRFNREGVLLLRGLDSRLSKDLPSDLQKLRCKVAFNALRFAEPVEELGNKIAERMKSKGPYLALHLRMEKDVWVRTGCLPGLSPEYDEVINNERIQRPELLTGRSNMTYHQRKMAGLCPLNVIEVMRLLKALGAPKDAKIYWAGGKPLGGKEALLPLIQEFPNFYNKEDLALPGELQPFVRKASLMAAIDYIVSEKSDVFMPSHGGNMGRAIQGHRAFTGHKKYITPNKRHMLPYFLNSSLSEEEFNRIIKELHQDSLGQPELRTNKNGRDVTKYPVPECMCNDDSNAPS*