AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0354840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0354840 MtrunA17_Chr3g0091441 96.053 456 16 1 1 454 1 456 0.0 914
Msa0354840 MtrunA17_Chr5g0399001 48.322 447 202 10 9 441 31 462 8.01e-139 406
Msa0354840 MtrunA17_Chr8g0352461 42.697 445 228 9 11 444 4 432 1.19e-116 348
Msa0354840 MtrunA17_Chr8g0352481 42.459 431 227 8 11 435 4 419 1.19e-115 346
Msa0354840 MtrunA17_Chr3g0139441 25.229 218 126 5 13 228 41 223 2.97e-16 80.5
Msa0354840 MtrunA17_Chr7g0268621 25.214 234 137 5 11 241 6 204 1.42e-15 78.2
Msa0354840 MtrunA17_Chr7g0268611 25.506 247 137 6 7 242 4 214 1.86e-14 74.7
Msa0354840 MtrunA17_Chr2g0305211 27.572 243 127 8 9 227 3 220 2.88e-14 74.7
Msa0354840 MtrunA17_Chr2g0305231 27.572 243 127 8 9 227 3 220 2.88e-14 74.7
Msa0354840 MtrunA17_Chr2g0304651 27.099 262 140 10 9 245 3 238 3.25e-14 74.7
Msa0354840 MtrunA17_Chr1g0147221 25.068 367 168 14 13 310 44 372 9.82e-14 72.8
Msa0354840 MtrunA17_Chr2g0301471 28.293 205 104 7 11 198 14 192 2.05e-13 72.4
Msa0354840 MtrunA17_Chr6g0485621 24.658 219 129 8 13 228 34 219 7.22e-13 70.1
Msa0354840 MtrunA17_Chr1g0169111 21.307 352 178 10 13 298 104 422 1.34e-12 69.7
Msa0354840 MtrunA17_Chr2g0304721 26.482 253 135 10 9 236 3 229 1.89e-12 69.3
Msa0354840 MtrunA17_Chr2g0286701 26.891 238 125 8 13 227 16 227 2.51e-12 67.8
Msa0354840 MtrunA17_Chr4g0025641 24.303 251 151 7 11 259 16 229 5.72e-12 65.5
Msa0354840 MtrunA17_Chr7g0262591 24.074 216 125 5 13 228 26 202 6.08e-12 67.4
Msa0354840 MtrunA17_Chr3g0125701 21.264 348 177 8 11 296 7 319 6.20e-12 67.0
Msa0354840 MtrunA17_Chr1g0148801 21.834 229 142 6 13 241 18 209 7.26e-12 67.0
Msa0354840 MtrunA17_Chr4g0070121 30.159 189 88 7 32 201 35 198 1.10e-11 64.7
Msa0354840 MtrunA17_Chr3g0125691 25.000 220 128 6 11 228 7 191 1.97e-11 65.5
Msa0354840 MtrunA17_Chr2g0301661 28.293 205 104 8 11 198 14 192 3.57e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0354840 AT5G61290.1 68.293 451 136 5 6 452 11 458 0.0 647
Msa0354840 AT5G07800.1 66.886 456 138 5 3 450 8 458 0.0 641
Msa0354840 AT1G62620.1 46.429 448 219 9 6 443 8 444 2.03e-136 400
Msa0354840 AT1G63370.1 46.205 448 220 9 6 443 8 444 8.09e-136 398
Msa0354840 AT1G62560.1 45.133 452 225 9 1 441 1 440 1.38e-129 383
Msa0354840 AT1G65860.1 45.393 445 221 8 8 443 10 441 2.58e-128 379
Msa0354840 AT1G12200.1 47.523 444 214 10 8 441 11 445 2.65e-126 375
Msa0354840 AT1G62620.2 47.595 395 188 8 6 392 8 391 7.21e-123 363
Msa0354840 AT1G12140.1 45.638 447 219 9 7 443 9 441 1.79e-121 362
Msa0354840 AT1G12140.3 45.638 447 219 9 7 443 9 441 1.79e-121 362
Msa0354840 AT1G62600.1 45.233 451 220 10 7 443 9 446 2.62e-121 361
Msa0354840 AT1G62560.2 46.324 408 198 8 1 399 1 396 2.81e-121 359
Msa0354840 AT1G12160.1 42.549 463 229 7 5 443 6 455 3.04e-121 362
Msa0354840 AT1G12140.2 45.291 446 220 9 7 443 9 439 2.23e-118 354
Msa0354840 AT1G62540.1 45.169 445 222 8 8 443 10 441 4.16e-117 351
Msa0354840 AT1G62570.1 44.176 455 230 9 7 452 9 448 6.21e-116 348
Msa0354840 AT1G62580.2 46.358 453 219 11 2 443 5 444 1.07e-113 342
Msa0354840 AT1G62540.2 43.404 470 219 10 8 443 10 466 2.33e-113 342
Msa0354840 AT1G12130.1 42.765 463 223 9 8 443 10 457 2.38e-112 339
Msa0354840 AT1G62600.2 47.089 395 184 9 7 389 9 390 6.82e-110 330
Msa0354840 AT1G63340.1 44.619 446 197 12 2 443 5 404 2.30e-108 327
Msa0354840 AT1G62580.1 43.416 486 218 14 2 443 5 477 2.87e-105 322
Msa0354840 AT1G62540.3 43.146 445 213 9 8 443 10 423 4.69e-105 319
Msa0354840 AT1G63370.2 46.746 338 164 7 6 338 8 334 2.96e-103 311
Msa0354840 AT1G12200.2 50.448 335 153 8 8 338 11 336 2.13e-98 300
Msa0354840 AT1G62580.3 50.000 350 147 10 2 335 5 342 1.84e-88 274
Msa0354840 AT1G63390.1 50.000 160 69 5 7 161 9 162 1.96e-33 124
Msa0354840 AT5G45180.1 25.567 485 243 19 6 405 8 459 8.45e-23 100
Msa0354840 AT1G19250.1 29.339 242 124 8 8 227 10 226 7.66e-17 83.2
Msa0354840 AT4G13260.2 23.611 216 132 4 13 228 30 212 4.45e-12 67.4
Msa0354840 AT4G32540.1 25.403 248 136 8 3 241 7 214 5.19e-12 67.8
Msa0354840 AT5G25620.2 24.231 260 151 8 13 261 34 258 5.41e-12 67.8
Msa0354840 AT5G25620.1 24.231 260 151 8 13 261 34 258 5.49e-12 67.8
Msa0354840 AT4G32540.2 25.403 248 136 8 3 241 7 214 5.87e-12 67.8
Msa0354840 AT2G33230.1 22.581 217 136 6 13 228 34 219 8.82e-12 67.4
Msa0354840 AT4G13260.1 23.611 216 132 4 13 228 30 212 1.10e-11 67.0
Msa0354840 AT5G11320.2 22.271 229 139 6 13 241 19 208 1.60e-11 65.9
Msa0354840 AT1G04610.1 21.719 221 133 6 13 228 39 224 2.33e-11 65.9
Msa0354840 AT4G28720.1 24.034 233 141 6 13 242 27 226 3.45e-11 65.5

Find 134 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATCATGTTACCTTTAA+TGG 0.061625 3_1:+28014728 None:intergenic
CCTTTAATGGATGGCAATTT+TGG 0.152109 3_1:+28014741 None:intergenic
GTTCTTATTTATAAAGAAAA+AGG 0.158723 3_1:-28009723 Msa0354840:three_prime_UTR
TGGATAGCTCAATTGCTTTC+TGG 0.169069 3_1:-28011443 Msa0354840:CDS
CCTCATGTCTCTACCTTTCT+TGG 0.191684 3_1:+28014998 None:intergenic
CCAAAATTGCCATCCATTAA+AGG 0.193960 3_1:-28014741 Msa0354840:intron
CTACCTTTCTTGGTAGAAAA+TGG 0.198982 3_1:+28015008 None:intergenic
TTCAAATCATTTGATTATAT+TGG 0.233262 3_1:-28009745 Msa0354840:three_prime_UTR
GGATTAGGTCAGAGAAAATA+AGG 0.240875 3_1:+28015449 None:intergenic
GTTAACAATGGAGTTAATTA+TGG 0.259199 3_1:+28010093 None:intergenic
GTTGGAATGCTTGATGATTA+TGG 0.281682 3_1:-28014876 Msa0354840:CDS
AGAGAGAGATTGAGGGGATT+AGG 0.311577 3_1:+28015434 None:intergenic
GAAAAGAGTTTCTACCTAAA+GGG 0.316983 3_1:+28015105 None:intergenic
GGCATTCCTACTCATGATAT+TGG 0.332854 3_1:-28011347 Msa0354840:CDS
ACCTCATTGTGGAATGGTTC+TGG 0.335360 3_1:+28014326 None:intergenic
GGATAGCTCAATTGCTTTCT+GGG 0.344271 3_1:-28011442 Msa0354840:CDS
TTCTATAACCACCATTCCTT+TGG 0.367024 3_1:+28012072 None:intergenic
CTAGTTCTATTGCTATATCT+TGG 0.369423 3_1:+28013946 None:intergenic
TTATCTCTCTTGCTGCTACT+AGG 0.370276 3_1:+28015219 None:intergenic
TGCCTGCTACTTCTCTTTCA+TGG 0.373660 3_1:+28011366 None:intergenic
AAATGCATAGTCACATTTAC+AGG 0.376176 3_1:-28014352 Msa0354840:CDS
AGAAAAGAGTTTCTACCTAA+AGG 0.378578 3_1:+28015104 None:intergenic
AATTAACTCCATTGTTAACT+TGG 0.387019 3_1:-28010089 Msa0354840:CDS
CTTGATGATTATGGTGTTTG+TGG 0.391657 3_1:-28014867 Msa0354840:CDS
TTGTGATAAGGTTGTGGAAG+AGG 0.392803 3_1:-28014805 Msa0354840:CDS
ATTCCTTTGGTGTCAAGAAA+AGG 0.410339 3_1:+28012085 None:intergenic
AGATGATAAGGTTCAATACT+AGG 0.413544 3_1:-28014908 Msa0354840:CDS
GACTCTATTGTGTATTGTAC+AGG 0.418054 3_1:-28012680 Msa0354840:CDS
TTACCCTTCCATCCTCTTCA+AGG 0.418369 3_1:+28012732 None:intergenic
TTGCAGTATTGTGACAAATA+TGG 0.418374 3_1:-28010172 Msa0354840:intron
AATACTAGGGTTAATTATGT+TGG 0.420112 3_1:-28014894 Msa0354840:CDS
TTGGGTTAAGAGAGATGATA+AGG 0.423127 3_1:-28014920 Msa0354840:CDS
TTCTCCATTCTTGTAATGGT+GGG 0.427729 3_1:+28010134 None:intergenic
ATTGAGCTATCCACATTGCT+TGG 0.438044 3_1:+28011453 None:intergenic
AAGGACTTTGAAGGGCCTCT+TGG 0.444012 3_1:+28010029 None:intergenic
TGCTATATCTTGGCCACTAT+AGG 0.444873 3_1:+28013956 None:intergenic
ATAGAAGGTGAAGACCCTTT+AGG 0.453442 3_1:-28015119 Msa0354840:CDS
TAAGAGATGGAGAAAGTAAA+GGG 0.454093 3_1:+28012011 None:intergenic
AGTCCTTACTTCACTCAACT+TGG 0.454993 3_1:-28010013 Msa0354840:CDS
GTGAACCCCATGACTTCTCT+TGG 0.457699 3_1:+28015038 None:intergenic
GATGCAGTGGTTGTTGCCAC+TGG 0.458878 3_1:-28014777 Msa0354840:CDS
GTAAGAGATGGAGAAAGTAA+AGG 0.463625 3_1:+28012010 None:intergenic
TTTCTCCATTCTTGTAATGG+TGG 0.463654 3_1:+28010133 None:intergenic
TTCCTTTGGTGTCAAGAAAA+GGG 0.465946 3_1:+28012086 None:intergenic
TTGAGCTATCCACATTGCTT+GGG 0.470765 3_1:+28011454 None:intergenic
GCACGAGAGTGAGGTTGTAT+TGG 0.471042 3_1:+28015528 None:intergenic
ATAAGTATTTCAACATGGCC+AGG 0.471295 3_1:+28014969 None:intergenic
TGGAAAGTGTGCTCATACAA+AGG 0.471300 3_1:+28012034 None:intergenic
CTTGCTGCTACTAGGCCTGC+TGG 0.473674 3_1:+28015227 None:intergenic
TCGAAGAATGTGTGTGTAAT+CGG 0.476098 3_1:-28015257 Msa0354840:CDS
CAAAGAGAAGGATTGTGATA+AGG 0.477585 3_1:-28014817 Msa0354840:CDS
TTCATCATTTCCTCCCATGA+TGG 0.480463 3_1:+28011407 None:intergenic
TATATAACAGGTTGTGGTGG+TGG 0.481545 3_1:-28013988 Msa0354840:intron
AGAGTGAGGTTGTATTGGTA+AGG 0.484691 3_1:+28015533 None:intergenic
AAGGGATATAGTTGAAATGA+GGG 0.489177 3_1:+28015552 None:intergenic
GAAGGATTGTGATAAGGTTG+TGG 0.494699 3_1:-28014811 Msa0354840:CDS
TAAGGGATATAGTTGAAATG+AGG 0.495425 3_1:+28015551 None:intergenic
GTAATCGGTGCTGGACCAGC+AGG 0.501353 3_1:-28015242 Msa0354840:CDS
GAGTGAAGTAAGGACTTTGA+AGG 0.503755 3_1:+28010020 None:intergenic
GCAAGAGAGATAAGAAAAGA+AGG 0.509739 3_1:-28015209 Msa0354840:CDS
GACTCCCACCATTACAAGAA+TGG 0.510699 3_1:-28010138 Msa0354840:CDS
CAATGTTCTAATTCAAACAC+TGG 0.511224 3_1:+28009696 None:intergenic
ATCATGTTACCTTTAATGGA+TGG 0.517087 3_1:+28014732 None:intergenic
CATTTACATATTTGTAACCA+TGG 0.519355 3_1:-28015297 Msa0354840:exon
TTACACACACATTCTTCGAT+TGG 0.520487 3_1:+28015261 None:intergenic
GATTAGGTCAGAGAAAATAA+GGG 0.520818 3_1:+28015450 None:intergenic
ATTGCTTGGGACTCAAAGAA+AGG 0.521937 3_1:+28011467 None:intergenic
AGTCCAAGTTGAGTGAAGTA+AGG 0.523677 3_1:+28010010 None:intergenic
ACAATCTCCAAGAGAAGTCA+TGG 0.524334 3_1:-28015045 Msa0354840:CDS
AATGTGTGTGTAATCGGTGC+TGG 0.528554 3_1:-28015251 Msa0354840:CDS
TATAGTTGAAATGAGGGGAT+AGG 0.528749 3_1:+28015558 None:intergenic
AGAGACATGAGGAGGTTCCC+TGG 0.530130 3_1:-28014987 Msa0354840:CDS
GTCAAGAAAAGGGAAGCTAT+AGG 0.535288 3_1:+28012096 None:intergenic
GAGTGAGGTTGTATTGGTAA+GGG 0.540883 3_1:+28015534 None:intergenic
TTGCTTGGGACTCAAAGAAA+GGG 0.544898 3_1:+28011468 None:intergenic
TACCTGTGGATGAAGGTGTA+AGG 0.545448 3_1:+28013836 None:intergenic
GATGATAAGGTTCAATACTA+GGG 0.548336 3_1:-28014907 Msa0354840:CDS
CGCCCTTGAAGAGGATGGAA+GGG 0.549203 3_1:-28012735 Msa0354840:CDS
TTTGTGGAAATAATTTGAAG+TGG 0.551830 3_1:-28014851 Msa0354840:CDS
GTGGTTGGAAATTCCTATAG+TGG 0.553536 3_1:-28013969 Msa0354840:CDS
GATTGTTAGAAGCAAAGAGA+AGG 0.554625 3_1:-28014829 Msa0354840:CDS
TTATCAATACCTGTGGATGA+AGG 0.559071 3_1:+28013829 None:intergenic
GAAAAGAAAGAAAATAGAAG+AGG 0.561713 3_1:+28015474 None:intergenic
AGATATAGCAATAGAACTAG+TGG 0.561789 3_1:-28013943 Msa0354840:CDS
TACCCTTCCATCCTCTTCAA+GGG 0.564528 3_1:+28012733 None:intergenic
ATCTCTTGATACTATAACTG+AGG 0.565528 3_1:-28013889 Msa0354840:CDS
TGGAGACATATCGAGACTCA+TGG 0.565705 3_1:-28010069 Msa0354840:CDS
ATTCTTCGATTGGTTCGTCT+CGG 0.568258 3_1:+28015271 None:intergenic
TAACAGGTTGTGGTGGTGGT+TGG 0.569616 3_1:-28013984 Msa0354840:intron
TTTAAGCTACAAATAGAGAG+TGG 0.570785 3_1:+28015351 None:intergenic
ATTTATATAACAGGTTGTGG+TGG 0.571818 3_1:-28013991 Msa0354840:intron
ATGCCTATAAAAGTAAGAGA+TGG 0.574083 3_1:+28011998 None:intergenic
GTTATAGAAGATGACAGAGT+GGG 0.574813 3_1:-28012058 Msa0354840:CDS
GCAGATAGACGCCCTTGAAG+AGG 0.576782 3_1:-28012744 Msa0354840:intron
ATAGACGCCCTTGAAGAGGA+TGG 0.578976 3_1:-28012740 Msa0354840:CDS
TACCATGAAAGAGAAGTAGC+AGG 0.579370 3_1:-28011368 Msa0354840:CDS
ACGCCCTTGAAGAGGATGGA+AGG 0.580659 3_1:-28012736 Msa0354840:CDS
AATGCTCAGGAATGGATACA+TGG 0.580865 3_1:-28014385 Msa0354840:intron
GATATAGCAATAGAACTAGT+GGG 0.582747 3_1:-28013942 Msa0354840:CDS
AAATATACCTCATTGTGGAA+TGG 0.585498 3_1:+28014320 None:intergenic
GACCTTACACCTTCATCCAC+AGG 0.589301 3_1:-28013838 Msa0354840:intron
TCTTGACACCAAAGGAATGG+TGG 0.594626 3_1:-28012080 Msa0354840:CDS
CAATCTCCAAGAGAAGTCAT+GGG 0.596018 3_1:-28015044 Msa0354840:CDS
GAACAGAATCATGACATTGG+AGG 0.596567 3_1:-28015167 Msa0354840:CDS
CTAGAACAGAATCATGACAT+TGG 0.599604 3_1:-28015170 Msa0354840:CDS
ATAGAGGATGCACGAGAGTG+AGG 0.601172 3_1:+28015519 None:intergenic
TTCATGGTAGAACTCCTCGA+TGG 0.601727 3_1:+28011382 None:intergenic
AAATCTCCAATATCATGAGT+AGG 0.603660 3_1:+28011341 None:intergenic
GGAGACATATCGAGACTCAT+GGG 0.605682 3_1:-28010068 Msa0354840:CDS
TAAGTATTTCAACATGGCCA+GGG 0.607233 3_1:+28014970 None:intergenic
AGAACTAGTGGGAATAGCAA+AGG 0.607437 3_1:-28013931 Msa0354840:CDS
TCTCTTGATACTATAACTGA+GGG 0.608259 3_1:-28013888 Msa0354840:CDS
AAAAGTATTGCCATCATGGG+AGG 0.610259 3_1:-28011417 Msa0354840:CDS
TTGGTTCGTCTCGGAAACCA+TGG 0.616433 3_1:+28015280 None:intergenic
GAGATGGAGAAAGTAAAGGG+TGG 0.617386 3_1:+28012014 None:intergenic
AGTGAAGTAAGGACTTTGAA+GGG 0.617403 3_1:+28010021 None:intergenic
TGGTTGAGCGTAATGACCAG+TGG 0.620721 3_1:+28014761 None:intergenic
ATATGTCTCCAAGTTAACAA+TGG 0.636025 3_1:+28010081 None:intergenic
GACAAATATGGTGAGAATGT+AGG 0.639510 3_1:-28010160 Msa0354840:CDS
CCAAGAAAGGTAGAGACATG+AGG 0.642980 3_1:-28014998 Msa0354840:CDS
AGGGATATAGTTGAAATGAG+GGG 0.658982 3_1:+28015553 None:intergenic
AGACTCATGGGATGATGATG+AGG 0.660730 3_1:-28010056 Msa0354840:CDS
GATACATAAGTATTTCAACA+TGG 0.661901 3_1:+28014964 None:intergenic
ATAGCAAATATACCTCATTG+TGG 0.662065 3_1:+28014315 None:intergenic
TCCAGAACCATTCCACAATG+AGG 0.662680 3_1:-28014327 Msa0354840:intron
ACTCTATTGTGTATTGTACA+GGG 0.671646 3_1:-28012679 Msa0354840:intron
TCTTTGAGTCCCAAGCAATG+TGG 0.679786 3_1:-28011463 Msa0354840:CDS
GGTTATAGAAGATGACAGAG+TGG 0.685485 3_1:-28012059 Msa0354840:CDS
TGATGATGAGGTGCTCCAAG+AGG 0.686965 3_1:-28010044 Msa0354840:CDS
AGAAAGGTAGAGACATGAGG+AGG 0.707282 3_1:-28014995 Msa0354840:CDS
ATCATGACATTGGAGGACAA+TGG 0.715553 3_1:-28015160 Msa0354840:CDS
TTATAGAAGATGACAGAGTG+GGG 0.721299 3_1:-28012057 Msa0354840:CDS
AATCTCCAAGAGAAGTCATG+GGG 0.726188 3_1:-28015043 Msa0354840:CDS
GGAAATGATGAAATCCATCG+AGG 0.746562 3_1:-28011396 Msa0354840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAAATATATTTTAAATT+TGG + chr3_1:28015304-28015323 None:intergenic 0.0%
!! AATATAAAATTAACAAAATC+TGG - chr3_1:28011874-28011893 Msa0354840:intron 10.0%
!!! TTTTATTAAATAAAGTAGTT+GGG - chr3_1:28012186-28012205 Msa0354840:intron 10.0%
!! ATGATATTTGATTAATAATT+TGG - chr3_1:28012319-28012338 Msa0354840:intron 10.0%
!! TGATATTTGATTAATAATTT+GGG - chr3_1:28012320-28012339 Msa0354840:intron 10.0%
!! TAAGAAAAATGTATAAATAT+AGG - chr3_1:28012918-28012937 Msa0354840:intron 10.0%
!! AAGAAAAATGTATAAATATA+GGG - chr3_1:28012919-28012938 Msa0354840:intron 10.0%
!! ATTATTAATTAGAGTTATAA+AGG - chr3_1:28012978-28012997 Msa0354840:intron 10.0%
!! TTATTAATTAGAGTTATAAA+GGG - chr3_1:28012979-28012998 Msa0354840:intron 10.0%
!! AAAAAAAATAAACAAAATCT+TGG - chr3_1:28013962-28013981 Msa0354840:CDS 10.0%
!!! TAAGAAAATATATTTTTCTA+TGG + chr3_1:28014230-28014249 None:intergenic 10.0%
!!! TTTTTTACTATTTTGATAAA+AGG + chr3_1:28014301-28014320 None:intergenic 10.0%
!!! TTCTTATTTATAAAGAAAAA+GGG - chr3_1:28015547-28015566 Msa0354840:five_prime_UTR 10.0%
!! TATGATGATAAAAATATAGA+AGG - chr3_1:28010135-28010154 Msa0354840:CDS 15.0%
!!! ATACAAGACTTTTATTTATA+TGG - chr3_1:28010724-28010743 Msa0354840:intron 15.0%
!!! ATTTTCTCATAATAAGTAAA+GGG - chr3_1:28010789-28010808 Msa0354840:intron 15.0%
!! ATAATTATATATTAATGCTC+AGG - chr3_1:28010871-28010890 Msa0354840:intron 15.0%
!! TCTATAATACATGTAAATAA+TGG - chr3_1:28011188-28011207 Msa0354840:intron 15.0%
!! AATTATAGAGTATACTAATA+TGG - chr3_1:28011579-28011598 Msa0354840:intron 15.0%
!! ATTATAGAGTATACTAATAT+GGG - chr3_1:28011580-28011599 Msa0354840:intron 15.0%
!!! TAGAAGTAATTTTTTTTGTA+GGG + chr3_1:28011683-28011702 None:intergenic 15.0%
!!! TTAGAAGTAATTTTTTTTGT+AGG + chr3_1:28011684-28011703 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+GGG + chr3_1:28011743-28011762 None:intergenic 15.0%
!! AATTAAACAAATTTGAATTG+AGG - chr3_1:28012000-28012019 Msa0354840:CDS 15.0%
!! AGAACTATTAAAATTAAGTA+AGG - chr3_1:28012069-28012088 Msa0354840:CDS 15.0%
!!! CTTTTATTAAATAAAGTAGT+TGG - chr3_1:28012185-28012204 Msa0354840:intron 15.0%
!! AGAAAAATGTATAAATATAG+GGG - chr3_1:28012920-28012939 Msa0354840:intron 15.0%
!! TATTAATTAGAGTTATAAAG+GGG - chr3_1:28012980-28012999 Msa0354840:intron 15.0%
!! CAATTGAAAAATTAGTTATA+AGG - chr3_1:28013323-28013342 Msa0354840:intron 15.0%
!! ACACTTCTAATTAAAAATAT+GGG - chr3_1:28013414-28013433 Msa0354840:intron 15.0%
!!! TTTTTAACAAAACAATATCT+TGG - chr3_1:28013993-28014012 Msa0354840:intron 15.0%
!! GTGCATATTATAAAATTTAA+TGG + chr3_1:28014022-28014041 None:intergenic 15.0%
!! AAAATTCTTAAAATGTCATA+AGG - chr3_1:28014317-28014336 Msa0354840:intron 15.0%
!! AAATTCTTAAAATGTCATAA+GGG - chr3_1:28014318-28014337 Msa0354840:intron 15.0%
!! TGACAATAAAAAACTATTAA+AGG + chr3_1:28014347-28014366 None:intergenic 15.0%
!! TTCATCTAAAAATACTTATT+TGG - chr3_1:28014484-28014503 Msa0354840:intron 15.0%
!! TCATCTAAAAATACTTATTT+GGG - chr3_1:28014485-28014504 Msa0354840:intron 15.0%
!! AATATAATATCATACGAAAA+TGG - chr3_1:28014772-28014791 Msa0354840:CDS 15.0%
!!! TTCATTTTTCCATAAATTAA+TGG + chr3_1:28015033-28015052 None:intergenic 15.0%
!! TAATTTATGGAAAAATGAAA+AGG - chr3_1:28015034-28015053 Msa0354840:CDS 15.0%
!! TTCAAATCATTTGATTATAT+TGG - chr3_1:28015524-28015543 Msa0354840:five_prime_UTR 15.0%
!!! GTTCTTATTTATAAAGAAAA+AGG - chr3_1:28015546-28015565 Msa0354840:five_prime_UTR 15.0%
!!! ATCTAAAAGATTTTTGTGAA+TGG - chr3_1:28010325-28010344 Msa0354840:intron 20.0%
!! TATCTCTAACATGAAATAAA+TGG + chr3_1:28010592-28010611 None:intergenic 20.0%
!! TGAATATGATATAAAGAAAC+AGG - chr3_1:28010612-28010631 Msa0354840:intron 20.0%
!! GAAAAAAATATACAAAGACT+TGG + chr3_1:28010750-28010769 None:intergenic 20.0%
!!! CATTTTCTCATAATAAGTAA+AGG - chr3_1:28010788-28010807 Msa0354840:intron 20.0%
!! AGAGATATAATTGTGATATA+TGG + chr3_1:28011071-28011090 None:intergenic 20.0%
!!! TAATACATGTAAATAATGGA+AGG - chr3_1:28011192-28011211 Msa0354840:intron 20.0%
!!! AATACATGTAAATAATGGAA+GGG - chr3_1:28011193-28011212 Msa0354840:intron 20.0%
!! TTTATTTATATAACAGGTTG+TGG - chr3_1:28011275-28011294 Msa0354840:intron 20.0%
!! ATTATAATTATCAATACCTG+TGG + chr3_1:28011450-28011469 None:intergenic 20.0%
!! ATTATATTAAGTGTGGTTTA+AGG - chr3_1:28011533-28011552 Msa0354840:intron 20.0%
!!! ATATGGGTTAAATATGTTTT+TGG - chr3_1:28011596-28011615 Msa0354840:intron 20.0%
!! AAACCTATGAAAATTAAGTA+AGG + chr3_1:28011654-28011673 None:intergenic 20.0%
!! GTTCAAAAATTTAAGAGTTT+AGG + chr3_1:28011744-28011763 None:intergenic 20.0%
!!! TTTATGACAATTTTTTACAG+AGG - chr3_1:28011912-28011931 Msa0354840:intron 20.0%
!! CAGAAGAAAAAAAAACTTAA+GGG - chr3_1:28012041-28012060 Msa0354840:CDS 20.0%
!! ATTGAGATAAATAATGCATA+AGG - chr3_1:28012212-28012231 Msa0354840:intron 20.0%
!! ACATTATATGAGTATTTGAA+AGG - chr3_1:28012409-28012428 Msa0354840:intron 20.0%
!! TATATAGTAACGTGTTATAT+TGG - chr3_1:28012494-28012513 Msa0354840:intron 20.0%
!! AAAAGTGGAATATATTGAAT+TGG - chr3_1:28013004-28013023 Msa0354840:intron 20.0%
!! AAAGTGGAATATATTGAATT+GGG - chr3_1:28012943-28012962 Msa0354840:intron 20.0%
!!! TGTTTTTGAAATTCATCAAT+TGG - chr3_1:28013134-28013153 Msa0354840:intron 20.0%
!!! TTAGGTTAATTACCTTTTTA+GGG + chr3_1:28013297-28013316 None:intergenic 20.0%
!!! TTTAGGTTAATTACCTTTTT+AGG + chr3_1:28013298-28013317 None:intergenic 20.0%
!!! ATTTTTCAATTGCTGATTTT+AGG + chr3_1:28013315-28013334 None:intergenic 20.0%
!! GACACTTCTAATTAAAAATA+TGG - chr3_1:28013413-28013432 Msa0354840:intron 20.0%
!!! ACATTTGATATACATACTTT+TGG + chr3_1:28013740-28013759 None:intergenic 20.0%
!!! ATTTGTTAGATTTCAACTAA+TGG - chr3_1:28014133-28014152 Msa0354840:intron 20.0%
!! TTTGTTAGATTTCAACTAAT+GGG - chr3_1:28014134-28014153 Msa0354840:intron 20.0%
!! CATCTAAAAATACTTATTTG+GGG - chr3_1:28014486-28014505 Msa0354840:intron 20.0%
!!! AGAGAATGAACAATTTTAAA+AGG + chr3_1:28014560-28014579 None:intergenic 20.0%
!! ATACGAAAATGGTATTATTT+GGG - chr3_1:28014783-28014802 Msa0354840:CDS 20.0%
!! AATTATCTGATTGTAATATG+AGG - chr3_1:28014911-28014930 Msa0354840:CDS 20.0%
! TAAGAAAAATGAGGATATAG+AGG + chr3_1:28009769-28009788 None:intergenic 25.0%
! AGGAGAAAATAAGAAAAATG+AGG + chr3_1:28009778-28009797 None:intergenic 25.0%
! GAAAAGAAAGAAAATAGAAG+AGG + chr3_1:28009798-28009817 None:intergenic 25.0%
! CATTTACATATTTGTAACCA+TGG - chr3_1:28009972-28009991 Msa0354840:three_prime_UTR 25.0%
! GATACATAAGTATTTCAACA+TGG + chr3_1:28010308-28010327 None:intergenic 25.0%
!! AAAGATTTTTGTGAATGGTT+TGG - chr3_1:28010330-28010349 Msa0354840:intron 25.0%
!! AAGATTTTTGTGAATGGTTT+GGG - chr3_1:28010331-28010350 Msa0354840:intron 25.0%
! AATACTAGGGTTAATTATGT+TGG - chr3_1:28010375-28010394 Msa0354840:intron 25.0%
! TTTGTGGAAATAATTTGAAG+TGG - chr3_1:28010418-28010437 Msa0354840:intron 25.0%
! GAAAATCATGTTACCTTTAA+TGG + chr3_1:28010544-28010563 None:intergenic 25.0%
! ATATAAAGAAACAGGAAGAA+AGG - chr3_1:28010620-28010639 Msa0354840:intron 25.0%
! TTTATAATGTAATACTCCAG+AGG - chr3_1:28010646-28010665 Msa0354840:intron 25.0%
! TATATATTAATGCTCAGGAA+TGG - chr3_1:28010876-28010895 Msa0354840:intron 25.0%
! ATTTACATGTATTATAGAGC+AGG + chr3_1:28011186-28011205 None:intergenic 25.0%
!!! TAAAAGTTCCGAGTTTTATA+GGG + chr3_1:28011623-28011642 None:intergenic 25.0%
!!! TTAAAAGTTCCGAGTTTTAT+AGG + chr3_1:28011624-28011643 None:intergenic 25.0%
!! AGTCCTTACTTAATTTTCAT+AGG - chr3_1:28011648-28011667 Msa0354840:intron 25.0%
!! AAACAAACTTTGTTGTAACA+AGG + chr3_1:28011714-28011733 None:intergenic 25.0%
! TAAACAAATTTGAATTGAGG+AGG - chr3_1:28012003-28012022 Msa0354840:CDS 25.0%
! AAACAAATTTGAATTGAGGA+GGG - chr3_1:28012004-28012023 Msa0354840:CDS 25.0%
! GCAGAAGAAAAAAAAACTTA+AGG - chr3_1:28012040-28012059 Msa0354840:CDS 25.0%
! AAGTAAGGACTAAACTTAAA+AGG - chr3_1:28012084-28012103 Msa0354840:CDS 25.0%
!! TTAAAAGGTCCCAATTTTAT+AGG - chr3_1:28012099-28012118 Msa0354840:CDS 25.0%
!! TAAAAGGTCCCAATTTTATA+GGG - chr3_1:28012100-28012119 Msa0354840:CDS 25.0%
!!! TTTTTGGTCCCTATAAAATT+GGG + chr3_1:28012111-28012130 None:intergenic 25.0%
!! AGTAGGGTTAAATATGTTTT+TGG + chr3_1:28012127-28012146 None:intergenic 25.0%
! AAATATCATCTCTCTTTAAC+AGG - chr3_1:28012466-28012485 Msa0354840:intron 25.0%
! AATATCATCTCTCTTTAACA+GGG - chr3_1:28012467-28012486 Msa0354840:intron 25.0%
! GTCATAGAGAAATTCTAATA+TGG - chr3_1:28012616-28012635 Msa0354840:intron 25.0%
! ATTTGGTCACACAAAAAAAA+AGG - chr3_1:28012660-28012679 Msa0354840:intron 25.0%
! CATAACTACTTTACTCTAAA+AGG + chr3_1:28012843-28012862 None:intergenic 25.0%
! AGTAAATGACTTAGTTAATC+CGG - chr3_1:28013087-28013106 Msa0354840:intron 25.0%
! CTTCATACCGAATATATAAA+TGG - chr3_1:28013361-28013380 Msa0354840:intron 25.0%
! TCAGAAGCCATTTATATATT+CGG + chr3_1:28013371-28013390 None:intergenic 25.0%
!! TTTTTCTCAAATAGACATGT+CGG - chr3_1:28013503-28013522 Msa0354840:intron 25.0%
!! TAAGTACTTGGTAGATTTTA+AGG - chr3_1:28013662-28013681 Msa0354840:intron 25.0%
!!! TGCATACTTTTTAGTTTCAA+TGG - chr3_1:28013709-28013728 Msa0354840:intron 25.0%
! AAATCCCACTAATTTGAAAA+GGG + chr3_1:28014117-28014136 None:intergenic 25.0%
! TTGTTAGATTTCAACTAATG+GGG - chr3_1:28014135-28014154 Msa0354840:intron 25.0%
! AAAGATTCAAAACAAATCGA+GGG + chr3_1:28014406-28014425 None:intergenic 25.0%
! AAAAGATTCAAAACAAATCG+AGG + chr3_1:28014407-28014426 None:intergenic 25.0%
! TAAAAATACTTATTTGGGGA+AGG - chr3_1:28014490-28014509 Msa0354840:intron 25.0%
! CATACGAAAATGGTATTATT+TGG - chr3_1:28014782-28014801 Msa0354840:CDS 25.0%
! GTTAACAATGGAGTTAATTA+TGG + chr3_1:28015179-28015198 None:intergenic 25.0%
! AATTAACTCCATTGTTAACT+TGG - chr3_1:28015180-28015199 Msa0354840:CDS 25.0%
!!! CATATTTTTTGTTCTTGCAT+GGG + chr3_1:28015362-28015381 None:intergenic 25.0%
AAGGGATATAGTTGAAATGA+GGG + chr3_1:28009720-28009739 None:intergenic 30.0%
TAAGGGATATAGTTGAAATG+AGG + chr3_1:28009721-28009740 None:intergenic 30.0%
GATTAGGTCAGAGAAAATAA+GGG + chr3_1:28009822-28009841 None:intergenic 30.0%
TTTAAGCTACAAATAGAGAG+TGG + chr3_1:28009921-28009940 None:intergenic 30.0%
GAAAAGAGTTTCTACCTAAA+GGG + chr3_1:28010167-28010186 None:intergenic 30.0%
AGAAAAGAGTTTCTACCTAA+AGG + chr3_1:28010168-28010187 None:intergenic 30.0%
! TTTCCATTTTCTACCAAGAA+AGG - chr3_1:28010258-28010277 Msa0354840:intron 30.0%
AGATGATAAGGTTCAATACT+AGG - chr3_1:28010361-28010380 Msa0354840:intron 30.0%
GATGATAAGGTTCAATACTA+GGG - chr3_1:28010362-28010381 Msa0354840:intron 30.0%
ATCATGTTACCTTTAATGGA+TGG + chr3_1:28010540-28010559 None:intergenic 30.0%
TAGCAAAACCCATTAACTAT+TGG - chr3_1:28010686-28010705 Msa0354840:intron 30.0%
TTCTTGCACCAATAGTTAAT+GGG + chr3_1:28010697-28010716 None:intergenic 30.0%
TTTCTTGCACCAATAGTTAA+TGG + chr3_1:28010698-28010717 None:intergenic 30.0%
AAATGCATAGTCACATTTAC+AGG - chr3_1:28010917-28010936 Msa0354840:intron 30.0%
AAATATACCTCATTGTGGAA+TGG + chr3_1:28010952-28010971 None:intergenic 30.0%
ATAGCAAATATACCTCATTG+TGG + chr3_1:28010957-28010976 None:intergenic 30.0%
ATCTCTATAAATTATCCACG+TGG - chr3_1:28011114-28011133 Msa0354840:intron 30.0%
!! ACAAAAGCTTTAGAAGCTTT+AGG - chr3_1:28011219-28011238 Msa0354840:intron 30.0%
!! CAAAAGCTTTAGAAGCTTTA+GGG - chr3_1:28011220-28011239 Msa0354840:intron 30.0%
ATTTATATAACAGGTTGTGG+TGG - chr3_1:28011278-28011297 Msa0354840:intron 30.0%
!! CTAGTTCTATTGCTATATCT+TGG + chr3_1:28011326-28011345 None:intergenic 30.0%
AGATATAGCAATAGAACTAG+TGG - chr3_1:28011326-28011345 Msa0354840:intron 30.0%
GATATAGCAATAGAACTAGT+GGG - chr3_1:28011327-28011346 Msa0354840:intron 30.0%
ATCTCTTGATACTATAACTG+AGG - chr3_1:28011380-28011399 Msa0354840:CDS 30.0%
TCTCTTGATACTATAACTGA+GGG - chr3_1:28011381-28011400 Msa0354840:CDS 30.0%
CTGTCTCATTATATTAAGTG+TGG - chr3_1:28011526-28011545 Msa0354840:intron 30.0%
! ATTAAGTGTGGTTTAAGGTT+AGG - chr3_1:28011538-28011557 Msa0354840:intron 30.0%
!! TTTTTGGTCCCTATAAAACT+CGG - chr3_1:28011612-28011631 Msa0354840:intron 30.0%
GTGCTAAGAACATTACTAAA+AGG + chr3_1:28011939-28011958 None:intergenic 30.0%
!!! GTTTTTGGTCCCTATAAAAT+TGG + chr3_1:28012112-28012131 None:intergenic 30.0%
GAGTTTGTCATCATAATTAG+AGG - chr3_1:28012295-28012314 Msa0354840:intron 30.0%
ATATCATCTCTCTTTAACAG+GGG - chr3_1:28012468-28012487 Msa0354840:intron 30.0%
ACTCTATTGTGTATTGTACA+GGG - chr3_1:28012590-28012609 Msa0354840:intron 30.0%
AGAAATTCTAATATGGTCAC+AGG - chr3_1:28012623-28012642 Msa0354840:intron 30.0%
AGGACCAAAGAAATAGTATT+TGG - chr3_1:28012643-28012662 Msa0354840:intron 30.0%
! GTGACCAAATACTATTTCTT+TGG + chr3_1:28012650-28012669 None:intergenic 30.0%
ATAAGTGTGAAATGAGTCAA+GGG + chr3_1:28012898-28012917 None:intergenic 30.0%
AATAAGTGTGAAATGAGTCA+AGG + chr3_1:28012899-28012918 None:intergenic 30.0%
TGTATAAATATAGGGGAAAG+TGG - chr3_1:28012927-28012946 Msa0354840:intron 30.0%
GTAAATGACTTAGTTAATCC+GGG - chr3_1:28013088-28013107 Msa0354840:intron 30.0%
!! TCATCAATTGGTTGTTTTGT+AGG - chr3_1:28013146-28013165 Msa0354840:intron 30.0%
TAAGAGATGGAGAAAGTAAA+GGG + chr3_1:28013261-28013280 None:intergenic 30.0%
!! TCTCCATCTCTTACTTTTAT+AGG - chr3_1:28013268-28013287 Msa0354840:intron 30.0%
ATGCCTATAAAAGTAAGAGA+TGG + chr3_1:28013274-28013293 None:intergenic 30.0%
! TTTTATAGGCATCCCTAAAA+AGG - chr3_1:28013282-28013301 Msa0354840:intron 30.0%
! TCATATGTGTTAGCGTTTTA+TGG - chr3_1:28013541-28013560 Msa0354840:intron 30.0%
TATGAGTATGAGTAAGTACT+TGG - chr3_1:28013650-28013669 Msa0354840:intron 30.0%
! ATGAGTGTACTACAGATTTT+AGG - chr3_1:28013775-28013794 Msa0354840:intron 30.0%
!! GAAAAAAGTATTGCCATCAT+GGG - chr3_1:28013849-28013868 Msa0354840:CDS 30.0%
AAATCTCCAATATCATGAGT+AGG + chr3_1:28013931-28013950 None:intergenic 30.0%
! TCATGATATTGGAGATTTTG+AGG - chr3_1:28013933-28013952 Msa0354840:CDS 30.0%
TGCACCTATTTATACATAGA+TGG - chr3_1:28014037-28014056 Msa0354840:intron 30.0%
GAAGCCATCTATGTATAAAT+AGG + chr3_1:28014044-28014063 None:intergenic 30.0%
CAAATCCCACTAATTTGAAA+AGG + chr3_1:28014118-28014137 None:intergenic 30.0%
TGTTAGATTTCAACTAATGG+GGG - chr3_1:28014136-28014155 Msa0354840:intron 30.0%
! TTGTCATGTCTAACTTTTCT+AGG - chr3_1:28014361-28014380 Msa0354840:CDS 30.0%
AAGATTCAAAACAAATCGAG+GGG + chr3_1:28014405-28014424 None:intergenic 30.0%
TGTTCATTCTCTTATCTCAA+CGG - chr3_1:28014568-28014587 Msa0354840:intron 30.0%
!!! GTTTAAGCACTTTTTAAGTC+GGG + chr3_1:28014661-28014680 None:intergenic 30.0%
!!! GGTTTAAGCACTTTTTAAGT+CGG + chr3_1:28014662-28014681 None:intergenic 30.0%
GTGCATGATTGAATAAGATA+TGG - chr3_1:28014948-28014967 Msa0354840:CDS 30.0%
TTGAATAAGATATGGTCCAT+TGG - chr3_1:28014956-28014975 Msa0354840:CDS 30.0%
TAGTCCTACATCAGAATTAT+TGG - chr3_1:28014981-28015000 Msa0354840:CDS 30.0%
TACACCAATAATTCTGATGT+AGG + chr3_1:28014988-28015007 None:intergenic 30.0%
TCCATAAATTAATGGAGCTA+CGG + chr3_1:28015025-28015044 None:intergenic 30.0%
TTGCAGTATTGTGACAAATA+TGG - chr3_1:28015097-28015116 Msa0354840:CDS 30.0%
! ACTTTTCTCCATTCTTGTAA+TGG + chr3_1:28015142-28015161 None:intergenic 30.0%
ATATGTCTCCAAGTTAACAA+TGG + chr3_1:28015191-28015210 None:intergenic 30.0%
!!! GCATATTTTTTGTTCTTGCA+TGG + chr3_1:28015363-28015382 None:intergenic 30.0%
!!! GAAACAACTCTTTCGTTTTT+TGG + chr3_1:28015491-28015510 None:intergenic 30.0%
CAATGTTCTAATTCAAACAC+TGG + chr3_1:28015576-28015595 None:intergenic 30.0%
TATAGTTGAAATGAGGGGAT+AGG + chr3_1:28009714-28009733 None:intergenic 35.0%
AGGGATATAGTTGAAATGAG+GGG + chr3_1:28009719-28009738 None:intergenic 35.0%
GGATTAGGTCAGAGAAAATA+AGG + chr3_1:28009823-28009842 None:intergenic 35.0%
TTACACACACATTCTTCGAT+TGG + chr3_1:28010011-28010030 None:intergenic 35.0%
TCGAAGAATGTGTGTGTAAT+CGG - chr3_1:28010012-28010031 Msa0354840:CDS 35.0%
GCAAGAGAGATAAGAAAAGA+AGG - chr3_1:28010060-28010079 Msa0354840:CDS 35.0%
CTAGAACAGAATCATGACAT+TGG - chr3_1:28010099-28010118 Msa0354840:CDS 35.0%
CTACCTTTCTTGGTAGAAAA+TGG + chr3_1:28010264-28010283 None:intergenic 35.0%
TAAGTATTTCAACATGGCCA+GGG + chr3_1:28010302-28010321 None:intergenic 35.0%
ATAAGTATTTCAACATGGCC+AGG + chr3_1:28010303-28010322 None:intergenic 35.0%
TTGGGTTAAGAGAGATGATA+AGG - chr3_1:28010349-28010368 Msa0354840:intron 35.0%
! GTTGGAATGCTTGATGATTA+TGG - chr3_1:28010393-28010412 Msa0354840:intron 35.0%
! CTTGATGATTATGGTGTTTG+TGG - chr3_1:28010402-28010421 Msa0354840:intron 35.0%
GATTGTTAGAAGCAAAGAGA+AGG - chr3_1:28010440-28010459 Msa0354840:intron 35.0%
CAAAGAGAAGGATTGTGATA+AGG - chr3_1:28010452-28010471 Msa0354840:intron 35.0%
!! CCTTTAATGGATGGCAATTT+TGG + chr3_1:28010531-28010550 None:intergenic 35.0%
CCAAAATTGCCATCCATTAA+AGG - chr3_1:28010528-28010547 Msa0354840:intron 35.0%
TATGAGAAAATGTCGCACAT+CGG + chr3_1:28010780-28010799 None:intergenic 35.0%
! TCTAATTACATTTTGCCACG+TGG + chr3_1:28011132-28011151 None:intergenic 35.0%
TTATCAATACCTGTGGATGA+AGG + chr3_1:28011443-28011462 None:intergenic 35.0%
! GGAAGGGTAATTTTCATAGA+TGG - chr3_1:28012550-28012569 Msa0354840:intron 35.0%
GACTCTATTGTGTATTGTAC+AGG - chr3_1:28012589-28012608 Msa0354840:intron 35.0%
AGTCAAGGGCTCAATTAATT+CGG + chr3_1:28012884-28012903 None:intergenic 35.0%
GAGTTATAAAGGGGAAAAAG+TGG - chr3_1:28012989-28013008 Msa0354840:intron 35.0%
ACGGAGCGAGTAATAATTAA+AGG - chr3_1:28013111-28013130 Msa0354840:intron 35.0%
!! TTCCTTTGGTGTCAAGAAAA+GGG + chr3_1:28013186-28013205 None:intergenic 35.0%
!! ATTCCTTTGGTGTCAAGAAA+AGG + chr3_1:28013187-28013206 None:intergenic 35.0%
! TTTTCTTGACACCAAAGGAA+TGG - chr3_1:28013186-28013205 Msa0354840:intron 35.0%
TTCTATAACCACCATTCCTT+TGG + chr3_1:28013200-28013219 None:intergenic 35.0%
GTTATAGAAGATGACAGAGT+GGG - chr3_1:28013211-28013230 Msa0354840:intron 35.0%
TTATAGAAGATGACAGAGTG+GGG - chr3_1:28013212-28013231 Msa0354840:intron 35.0%
GTAAGAGATGGAGAAAGTAA+AGG + chr3_1:28013262-28013281 None:intergenic 35.0%
!! GGAAAAAAGTATTGCCATCA+TGG - chr3_1:28013848-28013867 Msa0354840:CDS 35.0%
! ACACTCCCTTTTCAAATTAG+TGG - chr3_1:28014109-28014128 Msa0354840:intron 35.0%
! CACTCCCTTTTCAAATTAGT+GGG - chr3_1:28014110-28014129 Msa0354840:intron 35.0%
CTATGGTTGATTGTGCTTAA+TGG + chr3_1:28014213-28014232 None:intergenic 35.0%
AGTTAACTCACGCTGAATTA+AGG - chr3_1:28014733-28014752 Msa0354840:intron 35.0%
!! TACATCTGATCTTGATTTGG+CGG + chr3_1:28014843-28014862 None:intergenic 35.0%
GCATACATCTGATCTTGATT+TGG + chr3_1:28014846-28014865 None:intergenic 35.0%
CCATAAATTAATGGAGCTAC+GGG + chr3_1:28015024-28015043 None:intergenic 35.0%
GACAAATATGGTGAGAATGT+AGG - chr3_1:28015109-28015128 Msa0354840:CDS 35.0%
TTCTCCATTCTTGTAATGGT+GGG + chr3_1:28015138-28015157 None:intergenic 35.0%
TTTCTCCATTCTTGTAATGG+TGG + chr3_1:28015139-28015158 None:intergenic 35.0%
AGTGAAGTAAGGACTTTGAA+GGG + chr3_1:28015251-28015270 None:intergenic 35.0%
! GAGTGAGGTTGTATTGGTAA+GGG + chr3_1:28009738-28009757 None:intergenic 40.0%
! AGAGTGAGGTTGTATTGGTA+AGG + chr3_1:28009739-28009758 None:intergenic 40.0%
!! ATTCTTCGATTGGTTCGTCT+CGG + chr3_1:28010001-28010020 None:intergenic 40.0%
TTATCTCTCTTGCTGCTACT+AGG + chr3_1:28010053-28010072 None:intergenic 40.0%
GAACAGAATCATGACATTGG+AGG - chr3_1:28010102-28010121 Msa0354840:CDS 40.0%
ATCATGACATTGGAGGACAA+TGG - chr3_1:28010109-28010128 Msa0354840:CDS 40.0%
ATAGAAGGTGAAGACCCTTT+AGG - chr3_1:28010150-28010169 Msa0354840:CDS 40.0%
ACAATCTCCAAGAGAAGTCA+TGG - chr3_1:28010224-28010243 Msa0354840:intron 40.0%
CAATCTCCAAGAGAAGTCAT+GGG - chr3_1:28010225-28010244 Msa0354840:intron 40.0%
AATCTCCAAGAGAAGTCATG+GGG - chr3_1:28010226-28010245 Msa0354840:intron 40.0%
GAAGGATTGTGATAAGGTTG+TGG - chr3_1:28010458-28010477 Msa0354840:intron 40.0%
TTGTGATAAGGTTGTGGAAG+AGG - chr3_1:28010464-28010483 Msa0354840:intron 40.0%
AATGCTCAGGAATGGATACA+TGG - chr3_1:28010884-28010903 Msa0354840:intron 40.0%
GTATTATAGAGCAGGACTGT+CGG + chr3_1:28011178-28011197 None:intergenic 40.0%
TATATAACAGGTTGTGGTGG+TGG - chr3_1:28011281-28011300 Msa0354840:intron 40.0%
GTGGTTGGAAATTCCTATAG+TGG - chr3_1:28011300-28011319 Msa0354840:intron 40.0%
TGCTATATCTTGGCCACTAT+AGG + chr3_1:28011316-28011335 None:intergenic 40.0%
AGAACTAGTGGGAATAGCAA+AGG - chr3_1:28011338-28011357 Msa0354840:CDS 40.0%
! CACGTTTAGAACGCTATGAA+AGG - chr3_1:28011777-28011796 Msa0354840:intron 40.0%
GTCAAGGGCTCAATTAATTC+GGG + chr3_1:28012883-28012902 None:intergenic 40.0%
ATGACTTAGTTAATCCGGGA+CGG - chr3_1:28013092-28013111 Msa0354840:intron 40.0%
GTCAAGAAAAGGGAAGCTAT+AGG + chr3_1:28013176-28013195 None:intergenic 40.0%
! TTCCCTTTTCTTGACACCAA+AGG - chr3_1:28013181-28013200 Msa0354840:intron 40.0%
GGTTATAGAAGATGACAGAG+TGG - chr3_1:28013210-28013229 Msa0354840:intron 40.0%
! TGGAAAGTGTGCTCATACAA+AGG + chr3_1:28013238-28013257 None:intergenic 40.0%
TTGCTTGGGACTCAAAGAAA+GGG + chr3_1:28013804-28013823 None:intergenic 40.0%
ATTGCTTGGGACTCAAAGAA+AGG + chr3_1:28013805-28013824 None:intergenic 40.0%
TTGAGCTATCCACATTGCTT+GGG + chr3_1:28013818-28013837 None:intergenic 40.0%
ATTGAGCTATCCACATTGCT+TGG + chr3_1:28013819-28013838 None:intergenic 40.0%
TGGATAGCTCAATTGCTTTC+TGG - chr3_1:28013826-28013845 Msa0354840:intron 40.0%
GGATAGCTCAATTGCTTTCT+GGG - chr3_1:28013827-28013846 Msa0354840:intron 40.0%
!! AAAAGTATTGCCATCATGGG+AGG - chr3_1:28013852-28013871 Msa0354840:CDS 40.0%
TTCATCATTTCCTCCCATGA+TGG + chr3_1:28013865-28013884 None:intergenic 40.0%
GGAAATGATGAAATCCATCG+AGG - chr3_1:28013873-28013892 Msa0354840:CDS 40.0%
TACCATGAAAGAGAAGTAGC+AGG - chr3_1:28013901-28013920 Msa0354840:CDS 40.0%
GGCATTCCTACTCATGATAT+TGG - chr3_1:28013922-28013941 Msa0354840:CDS 40.0%
CAATCATGCACTTGTAGATC+TGG + chr3_1:28014939-28014958 None:intergenic 40.0%
TAAATTAATGGAGCTACGGG+TGG + chr3_1:28015021-28015040 None:intergenic 40.0%
CCCGTAGCTCCATTAATTTA+TGG - chr3_1:28015021-28015040 Msa0354840:CDS 40.0%
GAGTGAAGTAAGGACTTTGA+AGG + chr3_1:28015252-28015271 None:intergenic 40.0%
AGTCCTTACTTCACTCAACT+TGG - chr3_1:28015256-28015275 Msa0354840:CDS 40.0%
! AGTCCAAGTTGAGTGAAGTA+AGG + chr3_1:28015262-28015281 None:intergenic 40.0%
AGAGAGAGATTGAGGGGATT+AGG + chr3_1:28009838-28009857 None:intergenic 45.0%
AGAGAGAGAGAGAGATTGAG+GGG + chr3_1:28009844-28009863 None:intergenic 45.0%
GAGAGAGAGAGAGAGATTGA+GGG + chr3_1:28009845-28009864 None:intergenic 45.0%
AGAGAGAGAGAGAGAGATTG+AGG + chr3_1:28009846-28009865 None:intergenic 45.0%
AATGTGTGTGTAATCGGTGC+TGG - chr3_1:28010018-28010037 Msa0354840:CDS 45.0%
CCTCATGTCTCTACCTTTCT+TGG + chr3_1:28010274-28010293 None:intergenic 45.0%
CCAAGAAAGGTAGAGACATG+AGG - chr3_1:28010271-28010290 Msa0354840:intron 45.0%
AGAAAGGTAGAGACATGAGG+AGG - chr3_1:28010274-28010293 Msa0354840:intron 45.0%
! GGAAGAGGTTTTTGATGCAG+TGG - chr3_1:28010479-28010498 Msa0354840:intron 45.0%
TCCAGAACCATTCCACAATG+AGG - chr3_1:28010942-28010961 Msa0354840:intron 45.0%
ACCTCATTGTGGAATGGTTC+TGG + chr3_1:28010946-28010965 None:intergenic 45.0%
! TACCTGTGGATGAAGGTGTA+AGG + chr3_1:28011436-28011455 None:intergenic 45.0%
TACCCTTCCATCCTCTTCAA+GGG + chr3_1:28012539-28012558 None:intergenic 45.0%
TTACCCTTCCATCCTCTTCA+AGG + chr3_1:28012540-28012559 None:intergenic 45.0%
AGGGCTCAATTAATTCGGGA+CGG + chr3_1:28012879-28012898 None:intergenic 45.0%
AATTATTACTCGCTCCGTCC+CGG + chr3_1:28013109-28013128 None:intergenic 45.0%
TCTTGACACCAAAGGAATGG+TGG - chr3_1:28013189-28013208 Msa0354840:intron 45.0%
GAGATGGAGAAAGTAAAGGG+TGG + chr3_1:28013258-28013277 None:intergenic 45.0%
TCTTTGAGTCCCAAGCAATG+TGG - chr3_1:28013806-28013825 Msa0354840:intron 45.0%
TTCATGGTAGAACTCCTCGA+TGG + chr3_1:28013890-28013909 None:intergenic 45.0%
! TGCCTGCTACTTCTCTTTCA+TGG + chr3_1:28013906-28013925 None:intergenic 45.0%
CTGATGTAGGACTAGACCAA+TGG + chr3_1:28014975-28014994 None:intergenic 45.0%
GACTCCCACCATTACAAGAA+TGG - chr3_1:28015131-28015150 Msa0354840:CDS 45.0%
TGGAGACATATCGAGACTCA+TGG - chr3_1:28015200-28015219 Msa0354840:CDS 45.0%
GGAGACATATCGAGACTCAT+GGG - chr3_1:28015201-28015220 Msa0354840:CDS 45.0%
! AGACTCATGGGATGATGATG+AGG - chr3_1:28015213-28015232 Msa0354840:CDS 45.0%
!!! ATTTTTTTTATTTATATAAC+AGG - chr3_1:28011269-28011288 Msa0354840:intron 5.0%
!! TTAATTAATAAATATTAGTA+GGG + chr3_1:28012143-28012162 None:intergenic 5.0%
!! TTTAATTAATAAATATTAGT+AGG + chr3_1:28012144-28012163 None:intergenic 5.0%
!!! ATTTTTTTTCTTTTTTTTAT+TGG - chr3_1:28012360-28012379 Msa0354840:intron 5.0%
GCACGAGAGTGAGGTTGTAT+TGG + chr3_1:28009744-28009763 None:intergenic 50.0%
ATAGAGGATGCACGAGAGTG+AGG + chr3_1:28009753-28009772 None:intergenic 50.0%
! TTGGTTCGTCTCGGAAACCA+TGG + chr3_1:28009992-28010011 None:intergenic 50.0%
GTGAACCCCATGACTTCTCT+TGG + chr3_1:28010234-28010253 None:intergenic 50.0%
TGGTTGAGCGTAATGACCAG+TGG + chr3_1:28010511-28010530 None:intergenic 50.0%
!! TAACAGGTTGTGGTGGTGGT+TGG - chr3_1:28011285-28011304 Msa0354840:intron 50.0%
GACCTTACACCTTCATCCAC+AGG - chr3_1:28011431-28011450 Msa0354840:CDS 50.0%
ATAGACGCCCTTGAAGAGGA+TGG - chr3_1:28012529-28012548 Msa0354840:intron 50.0%
TGTCCAGTGATTTCGCTGTG+CGG - chr3_1:28012783-28012802 Msa0354840:intron 50.0%
! TGATGATGAGGTGCTCCAAG+AGG - chr3_1:28015225-28015244 Msa0354840:CDS 50.0%
! AAGGACTTTGAAGGGCCTCT+TGG + chr3_1:28015243-28015262 None:intergenic 50.0%
AGAGACATGAGGAGGTTCCC+TGG - chr3_1:28010282-28010301 Msa0354840:intron 55.0%
GATGCAGTGGTTGTTGCCAC+TGG - chr3_1:28010492-28010511 Msa0354840:intron 55.0%
GCAGATAGACGCCCTTGAAG+AGG - chr3_1:28012525-28012544 Msa0354840:intron 55.0%
ACGCCCTTGAAGAGGATGGA+AGG - chr3_1:28012533-28012552 Msa0354840:intron 55.0%
CGCCCTTGAAGAGGATGGAA+GGG - chr3_1:28012534-28012553 Msa0354840:intron 55.0%
AGTCCGCACAGCGAAATCAC+TGG + chr3_1:28012789-28012808 None:intergenic 55.0%
!! GTAATCGGTGCTGGACCAGC+AGG - chr3_1:28010027-28010046 Msa0354840:CDS 60.0%
CTTGCTGCTACTAGGCCTGC+TGG + chr3_1:28010045-28010064 None:intergenic 60.0%
AGCTAGCGACGCGTTACCTC+TGG + chr3_1:28010665-28010684 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 28009693 28015598 28009693 ID=Msa0354840;Name=Msa0354840
chr3_1 mRNA 28009693 28015598 28009693 ID=Msa0354840-mRNA-1;Parent=Msa0354840;Name=Msa0354840-mRNA-1;_AED=0.04;_eAED=0.04;_QI=268|1|1|1|0.85|0.75|8|307|454
chr3_1 exon 28009693 28010188 28009693 ID=Msa0354840-mRNA-1:exon:5888;Parent=Msa0354840-mRNA-1
chr3_1 exon 28011337 28011501 28011337 ID=Msa0354840-mRNA-1:exon:5887;Parent=Msa0354840-mRNA-1
chr3_1 exon 28011988 28012123 28011988 ID=Msa0354840-mRNA-1:exon:5886;Parent=Msa0354840-mRNA-1
chr3_1 exon 28012680 28012762 28012680 ID=Msa0354840-mRNA-1:exon:5885;Parent=Msa0354840-mRNA-1
chr3_1 exon 28013839 28014000 28013839 ID=Msa0354840-mRNA-1:exon:5884;Parent=Msa0354840-mRNA-1
chr3_1 exon 28014328 28014398 28014328 ID=Msa0354840-mRNA-1:exon:5883;Parent=Msa0354840-mRNA-1
chr3_1 exon 28014742 28015383 28014742 ID=Msa0354840-mRNA-1:exon:5882;Parent=Msa0354840-mRNA-1
chr3_1 exon 28015414 28015598 28015414 ID=Msa0354840-mRNA-1:exon:5881;Parent=Msa0354840-mRNA-1
chr3_1 five_prime_UTR 28015414 28015598 28015414 ID=Msa0354840-mRNA-1:five_prime_utr;Parent=Msa0354840-mRNA-1
chr3_1 five_prime_UTR 28015301 28015383 28015301 ID=Msa0354840-mRNA-1:five_prime_utr;Parent=Msa0354840-mRNA-1
chr3_1 CDS 28014742 28015300 28014742 ID=Msa0354840-mRNA-1:cds;Parent=Msa0354840-mRNA-1
chr3_1 CDS 28014328 28014398 28014328 ID=Msa0354840-mRNA-1:cds;Parent=Msa0354840-mRNA-1
chr3_1 CDS 28013839 28014000 28013839 ID=Msa0354840-mRNA-1:cds;Parent=Msa0354840-mRNA-1
chr3_1 CDS 28012680 28012762 28012680 ID=Msa0354840-mRNA-1:cds;Parent=Msa0354840-mRNA-1
chr3_1 CDS 28011988 28012123 28011988 ID=Msa0354840-mRNA-1:cds;Parent=Msa0354840-mRNA-1
chr3_1 CDS 28011337 28011501 28011337 ID=Msa0354840-mRNA-1:cds;Parent=Msa0354840-mRNA-1
chr3_1 CDS 28010000 28010188 28010000 ID=Msa0354840-mRNA-1:cds;Parent=Msa0354840-mRNA-1
chr3_1 three_prime_UTR 28009693 28009999 28009693 ID=Msa0354840-mRNA-1:three_prime_utr;Parent=Msa0354840-mRNA-1
Gene Sequence

>Msa0354840

ATGGTTTCCGAGACGAACCAATCGAAGAATGTGTGTGTAATCGGTGCTGGACCAGCAGGCCTAGTAGCAGCAAGAGAGATAAGAAAAGAAGGTCACAAAGTAATTGTGCTAGAACAGAATCATGACATTGGAGGACAATGGTTATATGATGATAAAAATATAGAAGGTGAAGACCCTTTAGGTAGAAACTCTTTTCTAAAAGTTCATAGCAGTATCTATAACTCTTTAAGAACACAATCTCCAAGAGAAGTCATGGGGTTCACAGATTTTCCATTTTCTACCAAGAAAGGTAGAGACATGAGGAGGTTCCCTGGCCATGTTGAAATACTTATGTATCTAAAAGATTTTTGTGAATGGTTTGGGTTAAGAGAGATGATAAGGTTCAATACTAGGGTTAATTATGTTGGAATGCTTGATGATTATGGTGTTTGTGGAAATAATTTGAAGTGGATTGTTAGAAGCAAAGAGAAGGATTGTGATAAGGTTGTGGAAGAGGTTTTTGATGCAGTGGTTGTTGCCACTGGTCATTACGCTCAACCAAAATTGCCATCCATTAAAGGAATGGATACATGGAAAAGAAAACAAATGCATAGTCACATTTACAGGACTCCAGAACCATTCCACAATGAGGTTGTGGTGGTGGTTGGAAATTCCTATAGTGGCCAAGATATAGCAATAGAACTAGTGGGAATAGCAAAGGAAGTTCATATAAGTTCAAGATCTCTTGATACTATAACTGAGGGATTTTCTAAAGTCATATCAAAACATGAGACCTTACACCTTCATCCACAGATAGACGCCCTTGAAGAGGATGGAAGGGTAATTTTCATAGATGGTTCTTGCGTTAAAGCAGACTCTATTGTGTATTGTACAGGGTACTCCTATAGCTTCCCTTTTCTTGACACCAAAGGAATGGTGGTTATAGAAGATGACAGAGTGGGGCCTTTGTATGAGCACACTTTCCACCCTTTACTTTCTCCATCTCTTACTTTTATAGGCATCCCTAAAAAGATTTTAGGATTCCCTTTCTTTGAGTCCCAAGCAATGTGGATAGCTCAATTGCTTTCTGGGAAAAAAGTATTGCCATCATGGGAGGAAATGATGAAATCCATCGAGGAGTTCTACCATGAAAGAGAAGTAGCAGGCATTCCTACTCATGATATTGGAGATTTTGAGTATTGTGACAAATATGGTGAGAATGTAGGACTCCCACCATTACAAGAATGGAGAAAAGTGCTTTGTGTTTCAGCCATAATTAACTCCATTGTTAACTTGGAGACATATCGAGACTCATGGGATGATGATGAGGTGCTCCAAGAGGCCCTTCAAAGTCCTTACTTCACTCAACTTGGACTTGAAGATTGA
Protein sequence

>Msa0354840

MVSETNQSKNVCVIGAGPAGLVAAREIRKEGHKVIVLEQNHDIGGQWLYDDKNIEGEDPLGRNSFLKVHSSIYNSLRTQSPREVMGFTDFPFSTKKGRDMRRFPGHVEILMYLKDFCEWFGLREMIRFNTRVNYVGMLDDYGVCGNNLKWIVRSKEKDCDKVVEEVFDAVVVATGHYAQPKLPSIKGMDTWKRKQMHSHIYRTPEPFHNEVVVVVGNSYSGQDIAIELVGIAKEVHISSRSLDTITEGFSKVISKHETLHLHPQIDALEEDGRVIFIDGSCVKADSIVYCTGYSYSFPFLDTKGMVVIEDDRVGPLYEHTFHPLLSPSLTFIGIPKKILGFPFFESQAMWIAQLLSGKKVLPSWEEMMKSIEEFYHEREVAGIPTHDIGDFEYCDKYGENVGLPPLQEWRKVLCVSAIINSIVNLETYRDSWDDDEVLQEALQSPYFTQLGLED*