Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402320 | XP_013459426.1 | 97.222 | 540 | 15 | 0 | 1 | 540 | 1 | 540 | 0.0 | 1091 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402320 | sp|Q9M5Q1|FUT1_PEA | 77.247 | 523 | 112 | 2 | 16 | 535 | 47 | 565 | 0.0 | 844 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402320 | A0A072UV20 | 97.222 | 540 | 15 | 0 | 1 | 540 | 1 | 540 | 0.0 | 1091 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0402320 | Msa0623710 | 0.952846 | 1.001167e-110 | -8.615850e-47 |
| Msa0402320 | Msa1397820 | 0.957844 | 1.014102e-115 | -8.615850e-47 |
| Msa0355260 | Msa0402320 | 0.986012 | 2.174694e-165 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402320 | MtrunA17_Chr3g0091781 | 97.222 | 540 | 15 | 0 | 1 | 540 | 1 | 540 | 0.0 | 1091 |
| Msa0402320 | MtrunA17_Chr4g0060941 | 76.852 | 540 | 117 | 4 | 3 | 535 | 38 | 576 | 0.0 | 855 |
| Msa0402320 | MtrunA17_Chr8g0388711 | 50.638 | 470 | 221 | 4 | 73 | 536 | 120 | 584 | 8.31e-165 | 480 |
| Msa0402320 | MtrunA17_Chr1g0196981 | 50.106 | 471 | 221 | 4 | 73 | 535 | 22 | 486 | 1.06e-164 | 476 |
| Msa0402320 | MtrunA17_Chr2g0286741 | 44.515 | 474 | 243 | 8 | 72 | 534 | 111 | 575 | 1.70e-134 | 402 |
| Msa0402320 | MtrunA17_Chr4g0001511 | 43.949 | 471 | 247 | 7 | 72 | 535 | 249 | 709 | 2.83e-130 | 396 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0402320 | AT2G03220.1 | 62.642 | 530 | 175 | 4 | 14 | 533 | 42 | 558 | 0.0 | 681 |
| Msa0402320 | AT2G03210.2 | 58.252 | 515 | 193 | 7 | 31 | 535 | 70 | 572 | 0.0 | 620 |
| Msa0402320 | AT2G03210.1 | 58.252 | 515 | 193 | 7 | 31 | 535 | 36 | 538 | 0.0 | 620 |
| Msa0402320 | AT2G03210.3 | 60.163 | 492 | 179 | 6 | 60 | 535 | 79 | 569 | 0.0 | 619 |
| Msa0402320 | AT1G14100.1 | 55.268 | 503 | 205 | 7 | 48 | 536 | 20 | 516 | 0.0 | 551 |
| Msa0402320 | AT1G14080.1 | 53.144 | 493 | 217 | 5 | 55 | 535 | 46 | 536 | 0.0 | 538 |
| Msa0402320 | AT2G15350.1 | 52.130 | 493 | 222 | 9 | 55 | 535 | 23 | 513 | 2.42e-177 | 510 |
| Msa0402320 | AT2G15390.1 | 51.760 | 483 | 221 | 6 | 64 | 535 | 21 | 502 | 4.34e-177 | 509 |
| Msa0402320 | AT2G15390.2 | 51.767 | 481 | 220 | 6 | 65 | 534 | 54 | 533 | 9.92e-177 | 509 |
| Msa0402320 | AT2G15370.1 | 50.840 | 476 | 225 | 6 | 69 | 535 | 57 | 532 | 7.77e-169 | 489 |
| Msa0402320 | AT1G14110.1 | 51.452 | 482 | 182 | 6 | 60 | 534 | 33 | 469 | 9.36e-168 | 484 |
| Msa0402320 | AT1G74420.2 | 49.000 | 500 | 229 | 10 | 16 | 506 | 42 | 524 | 3.96e-161 | 469 |
| Msa0402320 | AT1G74420.3 | 49.000 | 500 | 229 | 10 | 16 | 506 | 80 | 562 | 3.43e-160 | 468 |
| Msa0402320 | AT1G74420.1 | 49.004 | 502 | 222 | 11 | 16 | 506 | 42 | 520 | 4.13e-160 | 466 |
| Msa0402320 | AT1G74420.4 | 49.004 | 502 | 222 | 11 | 16 | 506 | 80 | 558 | 3.21e-159 | 465 |
Find 120 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGAAATAACCAGAGTTTA+AGG | 0.121631 | 3_2:-30311046 | None:intergenic |
| TGGATTTCATTTAGCGGTTT+AGG | 0.197340 | 3_2:+30310322 | Msa0402320:CDS |
| CCTCACAAATCGTGTTCTTT+TGG | 0.256519 | 3_2:+30310387 | Msa0402320:CDS |
| CCACCAAGTAGTTTATCTTT+TGG | 0.261850 | 3_2:-30310082 | None:intergenic |
| TGGAAAACTTTGTCCTTGTT+TGG | 0.264766 | 3_2:-30310760 | None:intergenic |
| AGCCGGTATCATTCAGTTAA+AGG | 0.272487 | 3_2:+30310142 | Msa0402320:CDS |
| TTATTGTAGGATTCGGTATA+AGG | 0.276356 | 3_2:-30310238 | None:intergenic |
| TTCACCCTACAAACAAAGTT+TGG | 0.276712 | 3_2:+30310803 | Msa0402320:CDS |
| CATTCAGTTAAAGGACTATC+AGG | 0.303102 | 3_2:+30310151 | Msa0402320:CDS |
| GGATTTCATTTAGCGGTTTA+GGG | 0.303332 | 3_2:+30310323 | Msa0402320:CDS |
| AATATAGCATGCACTCAATA+TGG | 0.323248 | 3_2:-30311587 | None:intergenic |
| AATCTTAGCTTGTACTTTGA+AGG | 0.325331 | 3_2:+30310939 | Msa0402320:CDS |
| GGATATGAGTTGGGGTCTTA+AGG | 0.326106 | 3_2:+30311443 | Msa0402320:CDS |
| ACAGTAAAAGATCTCAATTC+TGG | 0.327111 | 3_2:+30310262 | Msa0402320:CDS |
| AGATGAAGAAGACTAGTTGT+AGG | 0.331724 | 3_2:-30308124 | None:intergenic |
| AGTCTGGGGACTCACTTAAA+TGG | 0.332705 | 3_2:-30310285 | None:intergenic |
| GACAAGAAGCATGATAATAT+TGG | 0.332745 | 3_2:+30310982 | Msa0402320:CDS |
| TTCTTCTGTCTACCTTCATT+TGG | 0.339147 | 3_2:+30310582 | Msa0402320:CDS |
| CATTTAGCGGTTTAGGGAAC+AGG | 0.347183 | 3_2:+30310329 | Msa0402320:CDS |
| TGAAAACAGGAACATTTCTA+TGG | 0.353966 | 3_2:-30308003 | None:intergenic |
| TCACCCTACAAACAAAGTTT+GGG | 0.356509 | 3_2:+30310804 | Msa0402320:CDS |
| AATCCCCAAACTTTGTTTGT+AGG | 0.359650 | 3_2:-30310808 | None:intergenic |
| TGATCAAACACATGTTGAAA+TGG | 0.363067 | 3_2:-30310916 | None:intergenic |
| GGTTGACCCTGGAGTCGATA+TGG | 0.378603 | 3_2:+30310408 | Msa0402320:CDS |
| AAGAGTCGGCATCCAGATTA+GGG | 0.381150 | 3_2:+30310873 | Msa0402320:CDS |
| AAAGAGTCGGCATCCAGATT+AGG | 0.381207 | 3_2:+30310872 | Msa0402320:CDS |
| TCAGGAGCAGTTTCGTTCTC+AGG | 0.396736 | 3_2:-30311300 | None:intergenic |
| CAAACTACGTACTTACAGTC+TGG | 0.400090 | 3_2:-30310301 | None:intergenic |
| TCCTCCTTTCTATGATTGTA+AGG | 0.401474 | 3_2:+30311368 | Msa0402320:CDS |
| CAGACTGTAAGTACGTAGTT+TGG | 0.407993 | 3_2:+30310302 | Msa0402320:CDS |
| ACAAATACCTGCCTAAGAAA+TGG | 0.409190 | 3_2:-30310780 | None:intergenic |
| TCGTGTCGAAAACCCTAATC+TGG | 0.411005 | 3_2:-30310885 | None:intergenic |
| GGGAGAAACCAGGAGACATC+TGG | 0.412994 | 3_2:-30310454 | None:intergenic |
| GGCTACGTCGCACAGGGGCT+CGG | 0.431212 | 3_2:+30311249 | Msa0402320:CDS |
| TGACTGTTGAGAGGGAAATC+AGG | 0.431783 | 3_2:-30310478 | None:intergenic |
| CTTGGTGGACTTCTAGCATC+TGG | 0.432274 | 3_2:+30310097 | Msa0402320:CDS |
| GGCTCGGAGGTTTGAAACCT+TGG | 0.432875 | 3_2:+30311265 | Msa0402320:CDS |
| TCATGCTTCTTGTCAACATC+AGG | 0.434329 | 3_2:-30310973 | None:intergenic |
| ACTAGCTCATGGTCTACTTT+CGG | 0.435497 | 3_2:+30311228 | Msa0402320:CDS |
| ATCCCCAAACTTTGTTTGTA+GGG | 0.440499 | 3_2:-30310807 | None:intergenic |
| CAGTTTGTTGATATCCCTCA+TGG | 0.442703 | 3_2:-30311137 | None:intergenic |
| ATGCACTCAATATGGAGTTA+TGG | 0.449948 | 3_2:-30311579 | None:intergenic |
| ACATTGTGAGGATATGAGTT+GGG | 0.455716 | 3_2:+30311434 | Msa0402320:CDS |
| TACTTTCGGCTACGTCGCAC+AGG | 0.456550 | 3_2:+30311242 | Msa0402320:CDS |
| AAAAGTAAGAGACATGTATT+GGG | 0.462487 | 3_2:+30311068 | Msa0402320:CDS |
| GCACGTCGACAAGGAGGATC+AGG | 0.467846 | 3_2:-30311318 | None:intergenic |
| AAGCGAGTGGAAGTGAAAAC+AGG | 0.468053 | 3_2:-30308016 | None:intergenic |
| AATTTCTGCAGAAAGTTCCT+TGG | 0.468138 | 3_2:+30310656 | Msa0402320:CDS |
| TAGTTATTGAAGTTATGAAT+TGG | 0.473063 | 3_2:+30311485 | Msa0402320:exon |
| TTGTCGACGTGCAATGTCAA+TGG | 0.481831 | 3_2:+30311329 | Msa0402320:CDS |
| AACCGATTCCAGATGTCTCC+TGG | 0.488031 | 3_2:+30310446 | Msa0402320:CDS |
| AAACACATGTTGAAATGGAC+CGG | 0.499080 | 3_2:-30310911 | None:intergenic |
| GAAATCAGGAGGGAGAAACC+AGG | 0.499580 | 3_2:-30310464 | None:intergenic |
| GTAGACAGAAGAAGGTACTT+TGG | 0.501837 | 3_2:-30310572 | None:intergenic |
| TGTTGATATCCCTCATGGCT+TGG | 0.503548 | 3_2:-30311132 | None:intergenic |
| GTTGATGATGATGGAGAAGA+TGG | 0.505194 | 3_2:-30308094 | None:intergenic |
| TGGAGAAGATGGAAGAATGA+AGG | 0.510549 | 3_2:-30308083 | None:intergenic |
| GTCCTTTAACTGAATGATAC+CGG | 0.510788 | 3_2:-30310144 | None:intergenic |
| TCAGGTTTGTATAGTATCCA+AGG | 0.511855 | 3_2:-30311282 | None:intergenic |
| GACATTGTGAGGATATGAGT+TGG | 0.512210 | 3_2:+30311433 | Msa0402320:CDS |
| TGGGAATATCCAACTGTGAC+CGG | 0.515749 | 3_2:+30311087 | Msa0402320:CDS |
| CGTAATCTTGAAATGAGGTA+AGG | 0.517518 | 3_2:-30310184 | None:intergenic |
| TGAATGATACCGGCTGAGAC+AGG | 0.522502 | 3_2:-30310134 | None:intergenic |
| ACTGTGACCGGAGAAGTTAT+TGG | 0.523131 | 3_2:+30311099 | Msa0402320:CDS |
| GGAGTTGTAGTTGATGATGA+TGG | 0.523701 | 3_2:-30308103 | None:intergenic |
| GTAAACACCAATAACTTCTC+CGG | 0.525651 | 3_2:-30311106 | None:intergenic |
| CTAATGACATCCTTAAACTC+TGG | 0.526399 | 3_2:+30311036 | Msa0402320:CDS |
| CATAATCATGCACCAAATGA+AGG | 0.526474 | 3_2:-30310594 | None:intergenic |
| TGGGAACTCTTTAGAATCAG+AGG | 0.528580 | 3_2:-30310062 | None:intergenic |
| AGATCGACCATATCGACTCC+AGG | 0.528983 | 3_2:-30310415 | None:intergenic |
| TTCCCAAAAGATAAACTACT+TGG | 0.532835 | 3_2:+30310079 | Msa0402320:CDS |
| AACCAGGAGACATCTGGAAT+CGG | 0.534399 | 3_2:-30310448 | None:intergenic |
| AAACTACGTACTTACAGTCT+GGG | 0.536165 | 3_2:-30310300 | None:intergenic |
| AAATGAAGGTAGACAGAAGA+AGG | 0.539324 | 3_2:-30310580 | None:intergenic |
| CAGAAATCTGATCACTGTCA+TGG | 0.540196 | 3_2:+30310517 | Msa0402320:CDS |
| CCAAAAGATAAACTACTTGG+TGG | 0.541266 | 3_2:+30310082 | Msa0402320:CDS |
| TTAGCCTTACAATCATAGAA+AGG | 0.543257 | 3_2:-30311372 | None:intergenic |
| GTAGTTTGGATTTCATTTAG+CGG | 0.558001 | 3_2:+30310316 | Msa0402320:CDS |
| ATGATAGATCCTGTCTCAGC+CGG | 0.563399 | 3_2:+30310125 | Msa0402320:CDS |
| GATATCCCTCATGGCTTGGT+TGG | 0.563961 | 3_2:-30311128 | None:intergenic |
| CTTGAAATGAGGTAAGGAGA+TGG | 0.564341 | 3_2:-30310178 | None:intergenic |
| CAGTAATCTCTTTCCAAACA+AGG | 0.565980 | 3_2:+30310747 | Msa0402320:CDS |
| ATAACTTCTCCGGTCACAGT+TGG | 0.569629 | 3_2:-30311096 | None:intergenic |
| ATACAGAAATGCAGAAGCTA+AGG | 0.572547 | 3_2:-30310359 | None:intergenic |
| TCCTCATGTAAGACATTGTG+AGG | 0.572556 | 3_2:+30311422 | Msa0402320:CDS |
| TAAGAAATTGACTGTTGAGA+GGG | 0.572937 | 3_2:-30310486 | None:intergenic |
| GACAGCATCAAGAATAACGA+TGG | 0.573964 | 3_2:-30310709 | None:intergenic |
| ATTGAGTTTAACCGATGTGT+TGG | 0.587338 | 3_2:+30311203 | Msa0402320:CDS |
| CTAAGAAATTGACTGTTGAG+AGG | 0.591251 | 3_2:-30310487 | None:intergenic |
| ATCTTCGTAATCTTGAAATG+AGG | 0.597371 | 3_2:-30310189 | None:intergenic |
| GCCGACTCTTTCATCAACGT+TGG | 0.598421 | 3_2:-30310860 | None:intergenic |
| CTCAAACAAAATCAACAACT+AGG | 0.602192 | 3_2:+30308145 | Msa0402320:CDS |
| ACTTTCGGCTACGTCGCACA+GGG | 0.602869 | 3_2:+30311243 | Msa0402320:CDS |
| ATTCAGTTAAAGGACTATCA+GGG | 0.603770 | 3_2:+30310152 | Msa0402320:CDS |
| GCTAAGAGAGGCACTGACAC+AGG | 0.606195 | 3_2:+30311390 | Msa0402320:CDS |
| CACCCTACAAACAAAGTTTG+GGG | 0.613565 | 3_2:+30310805 | Msa0402320:CDS |
| TATGATTGTAAGGCTAAGAG+AGG | 0.617643 | 3_2:+30311378 | Msa0402320:CDS |
| TCCTAAAGCAAAATAACTAG+TGG | 0.619595 | 3_2:-30311511 | None:intergenic |
| ATTGACATTGCACGTCGACA+AGG | 0.621481 | 3_2:-30311327 | None:intergenic |
| GCCAACGTTGATGAAAGAGT+CGG | 0.622353 | 3_2:+30310859 | Msa0402320:CDS |
| GTTTACCAACCAAGCCATGA+GGG | 0.622486 | 3_2:+30311123 | Msa0402320:CDS |
| ACAGCATCAAGAATAACGAT+GGG | 0.630626 | 3_2:-30310708 | None:intergenic |
| CTGTTGAGAGGGAAATCAGG+AGG | 0.631751 | 3_2:-30310475 | None:intergenic |
| AACACATGTTGAAATGGACC+GGG | 0.633166 | 3_2:-30310910 | None:intergenic |
| CATTGTGAGGATATGAGTTG+GGG | 0.637118 | 3_2:+30311435 | Msa0402320:CDS |
| ATGTGTTGGTGACTAGCTCA+TGG | 0.637268 | 3_2:+30311217 | Msa0402320:CDS |
| GGTGCATGATTATGATGATG+AGG | 0.640848 | 3_2:+30310603 | Msa0402320:CDS |
| GCCTTACAATCATAGAAAGG+AGG | 0.644238 | 3_2:-30311369 | None:intergenic |
| GATCGACCATATCGACTCCA+GGG | 0.646501 | 3_2:-30310414 | None:intergenic |
| TCCTCACAATGTCTTACATG+AGG | 0.647592 | 3_2:-30311423 | None:intergenic |
| CCAAAAGAACACGATTTGTG+AGG | 0.650604 | 3_2:-30310387 | None:intergenic |
| AACTACGTACTTACAGTCTG+GGG | 0.654367 | 3_2:-30310299 | None:intergenic |
| TGTTGAGAGGGAAATCAGGA+GGG | 0.662386 | 3_2:-30310474 | None:intergenic |
| TACGTCGCACAGGGGCTCGG+AGG | 0.665321 | 3_2:+30311252 | Msa0402320:CDS |
| TGTTTACCAACCAAGCCATG+AGG | 0.669655 | 3_2:+30311122 | Msa0402320:CDS |
| GAGAGAAGCGAATAAGCGAG+TGG | 0.671149 | 3_2:-30308029 | None:intergenic |
| AAAGGAGGAGCATGAAAACA+CGG | 0.681859 | 3_2:-30311354 | None:intergenic |
| GACATTGCACGTCGACAAGG+AGG | 0.696138 | 3_2:-30311324 | None:intergenic |
| TGAGCTAGTCACCAACACAT+CGG | 0.705484 | 3_2:-30311214 | None:intergenic |
| CTTTCGGCTACGTCGCACAG+GGG | 0.764738 | 3_2:+30311244 | Msa0402320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAATGCACTTTTTAATT+TGG | + | chr3_2:30308202-30308221 | Msa0402320:intron | 15.0% |
| !!! | TAATATTTTTAAGTTCTGTT+TGG | + | chr3_2:30308543-30308562 | Msa0402320:intron | 15.0% |
| !!! | TTTTTTTCAATTAAAATTGC+AGG | + | chr3_2:30309025-30309044 | Msa0402320:intron | 15.0% |
| !!! | TTTTTTCAATTAAAATTGCA+GGG | + | chr3_2:30309026-30309045 | Msa0402320:intron | 15.0% |
| !!! | AACTATTTGATTGTTTTTTA+TGG | + | chr3_2:30309595-30309614 | Msa0402320:intron | 15.0% |
| !! | TTCTATTTGATAAATAGTTA+AGG | + | chr3_2:30309727-30309746 | Msa0402320:intron | 15.0% |
| !! | ATAACAAAGTTCTTAAAAAA+TGG | + | chr3_2:30309811-30309830 | Msa0402320:intron | 15.0% |
| !! | TTTCATATTATTTGGTTATT+AGG | + | chr3_2:30310025-30310044 | Msa0402320:intron | 15.0% |
| !! | ATGTAACGTTTAATTCAATT+TGG | + | chr3_2:30308489-30308508 | Msa0402320:intron | 20.0% |
| !! | ATATGATCTAATAACGTAAA+AGG | - | chr3_2:30308521-30308540 | None:intergenic | 20.0% |
| !!! | ATAATCCGCTATATATTTTA+CGG | - | chr3_2:30308854-30308873 | None:intergenic | 20.0% |
| !!! | TTTTTCAATTAAAATTGCAG+GGG | + | chr3_2:30309027-30309046 | Msa0402320:intron | 20.0% |
| !! | AGTTACTTGAATTAACTTAT+CGG | + | chr3_2:30309094-30309113 | Msa0402320:intron | 20.0% |
| !!! | TATAACTAAAAAGACTTGTT+TGG | - | chr3_2:30309175-30309194 | None:intergenic | 20.0% |
| !! | AGATCCTTAATGTATTATAA+GGG | + | chr3_2:30309237-30309256 | Msa0402320:intron | 20.0% |
| !!! | GCATATATAAAGTGATTTTT+GGG | - | chr3_2:30309350-30309369 | None:intergenic | 20.0% |
| !!! | TGCATATATAAAGTGATTTT+TGG | - | chr3_2:30309351-30309370 | None:intergenic | 20.0% |
| !! | CAAAAAATTAAACTTGGATT+TGG | - | chr3_2:30309450-30309469 | None:intergenic | 20.0% |
| !!! | CAAATCCAAGTTTAATTTTT+TGG | + | chr3_2:30309448-30309467 | Msa0402320:intron | 20.0% |
| !! | CATTTCCAAAAAATTAAACT+TGG | - | chr3_2:30309456-30309475 | None:intergenic | 20.0% |
| !!! | AGTTTAATTTTTTGGAAATG+TGG | + | chr3_2:30309456-30309475 | Msa0402320:intron | 20.0% |
| !!! | GTTTAATTTTTTGGAAATGT+GGG | + | chr3_2:30309457-30309476 | Msa0402320:intron | 20.0% |
| !! | CATAGAAAAAAGAAATATCA+AGG | - | chr3_2:30309697-30309716 | None:intergenic | 20.0% |
| !!! | CTTGATATTTCTTTTTTCTA+TGG | + | chr3_2:30309695-30309714 | Msa0402320:intron | 20.0% |
| !!! | ATTTTCAAAATCAAGATTCA+AGG | - | chr3_2:30309779-30309798 | None:intergenic | 20.0% |
| !! | AACCAATAAATGCATAAAAT+AGG | - | chr3_2:30309952-30309971 | None:intergenic | 20.0% |
| !! | TGATAGAGTTTCATATTATT+TGG | + | chr3_2:30310017-30310036 | Msa0402320:intron | 20.0% |
| !!! | ATCTTTTACTGTTTTATTGT+AGG | - | chr3_2:30310254-30310273 | None:intergenic | 20.0% |
| !! | TAGTTATTGAAGTTATGAAT+TGG | + | chr3_2:30311485-30311504 | Msa0402320:exon | 20.0% |
| ! | AGTGCATTATATTAATGAAG+AGG | - | chr3_2:30308194-30308213 | None:intergenic | 25.0% |
| ! | TTACAATTTATCTGCATTCA+GGG | - | chr3_2:30308629-30308648 | None:intergenic | 25.0% |
| ! | TTTACAATTTATCTGCATTC+AGG | - | chr3_2:30308630-30308649 | None:intergenic | 25.0% |
| !! | TAATCCGCTATATATTTTAC+GGG | - | chr3_2:30308853-30308872 | None:intergenic | 25.0% |
| ! | GTAGTGTTTGATTAAATTAG+CGG | + | chr3_2:30308944-30308963 | Msa0402320:intron | 25.0% |
| ! | TAATACATTAAGGATCTGTT+TGG | - | chr3_2:30309234-30309253 | None:intergenic | 25.0% |
| ! | CAGATCCTTAATGTATTATA+AGG | + | chr3_2:30309236-30309255 | Msa0402320:intron | 25.0% |
| ! | CAAACCCTTATAATACATTA+AGG | - | chr3_2:30309244-30309263 | None:intergenic | 25.0% |
| !!! | TATATAAAGTGATTTTTGGG+TGG | - | chr3_2:30309347-30309366 | None:intergenic | 25.0% |
| ! | ACTTTATATATGCACACATT+TGG | + | chr3_2:30309357-30309376 | Msa0402320:intron | 25.0% |
| !! | AGTGTTTGAAATTACAATTC+CGG | + | chr3_2:30309396-30309415 | Msa0402320:intron | 25.0% |
| ! | TTAGTTAAGATTGAATCAAC+CGG | - | chr3_2:30309553-30309572 | None:intergenic | 25.0% |
| !! | TTTTTATGGTTTTCTGACAT+TGG | + | chr3_2:30309609-30309628 | Msa0402320:intron | 25.0% |
| ! | TTAAAAAATGGACAATAGAG+AGG | + | chr3_2:30309823-30309842 | Msa0402320:intron | 25.0% |
| ! | TAAAAAATGGACAATAGAGA+GGG | + | chr3_2:30309824-30309843 | Msa0402320:intron | 25.0% |
| !! | ATCTTTTTGGATACTTGAAT+AGG | + | chr3_2:30309869-30309888 | Msa0402320:intron | 25.0% |
| !! | GTCCTATTTTATGCATTTAT+TGG | + | chr3_2:30309947-30309966 | Msa0402320:intron | 25.0% |
| !!! | TGCATTTATTGGTTTTCTAT+TGG | + | chr3_2:30309958-30309977 | Msa0402320:intron | 25.0% |
| !! | TTTCTCATTTGCATAACTTT+TGG | + | chr3_2:30309986-30310005 | Msa0402320:intron | 25.0% |
| !!! | TACTGTTTTATTGTAGGATT+CGG | - | chr3_2:30310248-30310267 | None:intergenic | 25.0% |
| !! | AAAAAATTTGAAGTCGAAAG+CGG | + | chr3_2:30311011-30311030 | Msa0402320:CDS | 25.0% |
| ! | AAAAAGTAAGAGACATGTAT+TGG | + | chr3_2:30311067-30311086 | Msa0402320:CDS | 25.0% |
| ! | AAAAGTAAGAGACATGTATT+GGG | + | chr3_2:30311068-30311087 | Msa0402320:CDS | 25.0% |
| ! | AAATACACAATCAAAAAGCT+TGG | + | chr3_2:30311166-30311185 | Msa0402320:CDS | 25.0% |
| ! | AATACACAATCAAAAAGCTT+GGG | + | chr3_2:30311167-30311186 | Msa0402320:CDS | 25.0% |
| TGAAAACAGGAACATTTCTA+TGG | - | chr3_2:30308006-30308025 | None:intergenic | 30.0% | |
| CTCAAACAAAATCAACAACT+AGG | + | chr3_2:30308145-30308164 | Msa0402320:CDS | 30.0% | |
| ATGAAACACAAATACTCTCT+CGG | - | chr3_2:30308360-30308379 | None:intergenic | 30.0% | |
| !! | AGAGAGTATTTGTGTTTCAT+AGG | + | chr3_2:30308360-30308379 | Msa0402320:intron | 30.0% |
| GTATTTGTGTTTCATAGGAT+TGG | + | chr3_2:30308365-30308384 | Msa0402320:intron | 30.0% | |
| AGTTCTGTTTGGTACAATAT+AGG | + | chr3_2:30308554-30308573 | Msa0402320:intron | 30.0% | |
| GTTCTGTTTGGTACAATATA+GGG | + | chr3_2:30308555-30308574 | Msa0402320:intron | 30.0% | |
| TTCTGTTTGGTACAATATAG+GGG | + | chr3_2:30308556-30308575 | Msa0402320:intron | 30.0% | |
| ACTAACAAAGTCTACATTCA+GGG | - | chr3_2:30308658-30308677 | None:intergenic | 30.0% | |
| TTTGCAATTTCTCTTCATTC+AGG | + | chr3_2:30308778-30308797 | Msa0402320:intron | 30.0% | |
| TTGCAATTTCTCTTCATTCA+GGG | + | chr3_2:30308779-30308798 | Msa0402320:intron | 30.0% | |
| ATTCCCCGTAAAATATATAG+CGG | + | chr3_2:30308846-30308865 | Msa0402320:intron | 30.0% | |
| ! | AATCCGCTATATATTTTACG+GGG | - | chr3_2:30308852-30308871 | None:intergenic | 30.0% |
| TTTCAAACACTTAGAAGTTG+TGG | - | chr3_2:30309387-30309406 | None:intergenic | 30.0% | |
| !!! | TAATTTTTTGGAAATGTGGG+TGG | + | chr3_2:30309460-30309479 | Msa0402320:intron | 30.0% |
| ATCAAATAGTTGAGCTGATA+TGG | - | chr3_2:30309586-30309605 | None:intergenic | 30.0% | |
| ATCCAAAAAGATAGTCTACA+TGG | - | chr3_2:30309861-30309880 | None:intergenic | 30.0% | |
| AAAACTAACATCCCAATTCA+GGG | - | chr3_2:30309896-30309915 | None:intergenic | 30.0% | |
| AAAAACTAACATCCCAATTC+AGG | - | chr3_2:30309897-30309916 | None:intergenic | 30.0% | |
| TTCCCAAAAGATAAACTACT+TGG | + | chr3_2:30310079-30310098 | Msa0402320:CDS | 30.0% | |
| ! | CACCAAGTAGTTTATCTTTT+GGG | - | chr3_2:30310084-30310103 | None:intergenic | 30.0% |
| ATTCAGTTAAAGGACTATCA+GGG | + | chr3_2:30310152-30310171 | Msa0402320:CDS | 30.0% | |
| ATCTTCGTAATCTTGAAATG+AGG | - | chr3_2:30310192-30310211 | None:intergenic | 30.0% | |
| ! | TTATTGTAGGATTCGGTATA+AGG | - | chr3_2:30310241-30310260 | None:intergenic | 30.0% |
| ACAGTAAAAGATCTCAATTC+TGG | + | chr3_2:30310262-30310281 | Msa0402320:CDS | 30.0% | |
| GTAGTTTGGATTTCATTTAG+CGG | + | chr3_2:30310316-30310335 | Msa0402320:CDS | 30.0% | |
| TAAGAAATTGACTGTTGAGA+GGG | - | chr3_2:30310489-30310508 | None:intergenic | 30.0% | |
| ! | TCTGTTTTCATCATTAACCA+AGG | - | chr3_2:30310676-30310695 | None:intergenic | 30.0% |
| ! | GACAAAGTTTTCCATTTCTT+AGG | + | chr3_2:30310769-30310788 | Msa0402320:CDS | 30.0% |
| TGATCAAACACATGTTGAAA+TGG | - | chr3_2:30310919-30310938 | None:intergenic | 30.0% | |
| !! | AATCTTAGCTTGTACTTTGA+AGG | + | chr3_2:30310939-30310958 | Msa0402320:CDS | 30.0% |
| ! | GACAAGAAGCATGATAATAT+TGG | + | chr3_2:30310982-30311001 | Msa0402320:CDS | 30.0% |
| TTCGAAATAACCAGAGTTTA+AGG | - | chr3_2:30311049-30311068 | None:intergenic | 30.0% | |
| !! | TTAGCCTTACAATCATAGAA+AGG | - | chr3_2:30311375-30311394 | None:intergenic | 30.0% |
| !! | ACCACTAGTTATTTTGCTTT+AGG | + | chr3_2:30311510-30311529 | Msa0402320:three_prime_UTR | 30.0% |
| TCCTAAAGCAAAATAACTAG+TGG | - | chr3_2:30311514-30311533 | None:intergenic | 30.0% | |
| ! | AGATGAAGAAGACTAGTTGT+AGG | - | chr3_2:30308127-30308146 | None:intergenic | 35.0% |
| TTGTGTTTCATAGGATTGGA+TGG | + | chr3_2:30308369-30308388 | Msa0402320:intron | 35.0% | |
| GACTAACAAAGTCTACATTC+AGG | - | chr3_2:30308659-30308678 | None:intergenic | 35.0% | |
| ACTAACGAAGTTTGCATTCA+GGG | - | chr3_2:30308690-30308709 | None:intergenic | 35.0% | |
| ! | CGGATTATATGCTAGCTTAT+AGG | + | chr3_2:30308866-30308885 | Msa0402320:intron | 35.0% |
| !! | ATAGCTGATAGTGGATAAAC+TGG | + | chr3_2:30308909-30308928 | Msa0402320:intron | 35.0% |
| TTTCTCCCTTTACTATCTCT+TGG | - | chr3_2:30309319-30309338 | None:intergenic | 35.0% | |
| TCCATATGGCATGATTTATC+CGG | - | chr3_2:30309418-30309437 | None:intergenic | 35.0% | |
| ! | TTTGGAAGTGTACTTCCATA+TGG | - | chr3_2:30309432-30309451 | None:intergenic | 35.0% |
| TTGACTAGACTATTGCTTAC+AGG | - | chr3_2:30309497-30309516 | None:intergenic | 35.0% | |
| AGCAATAGTCTAGTCAAAGA+TGG | + | chr3_2:30309500-30309519 | Msa0402320:intron | 35.0% | |
| ! | GACCATGTAGACTATCTTTT+TGG | + | chr3_2:30309856-30309875 | Msa0402320:intron | 35.0% |
| TACTTGTTTACATGCTCTGT+TGG | + | chr3_2:30309923-30309942 | Msa0402320:intron | 35.0% | |
| ! | CCACCAAGTAGTTTATCTTT+TGG | - | chr3_2:30310085-30310104 | None:intergenic | 35.0% |
| CCAAAAGATAAACTACTTGG+TGG | + | chr3_2:30310082-30310101 | Msa0402320:CDS | 35.0% | |
| GTCCTTTAACTGAATGATAC+CGG | - | chr3_2:30310147-30310166 | None:intergenic | 35.0% | |
| CATTCAGTTAAAGGACTATC+AGG | + | chr3_2:30310151-30310170 | Msa0402320:CDS | 35.0% | |
| CGTAATCTTGAAATGAGGTA+AGG | - | chr3_2:30310187-30310206 | None:intergenic | 35.0% | |
| !!! | TATAAGGTCCGCATTTTTTG+TGG | - | chr3_2:30310225-30310244 | None:intergenic | 35.0% |
| AAACTACGTACTTACAGTCT+GGG | - | chr3_2:30310303-30310322 | None:intergenic | 35.0% | |
| TGGATTTCATTTAGCGGTTT+AGG | + | chr3_2:30310322-30310341 | Msa0402320:CDS | 35.0% | |
| GGATTTCATTTAGCGGTTTA+GGG | + | chr3_2:30310323-30310342 | Msa0402320:CDS | 35.0% | |
| ATACAGAAATGCAGAAGCTA+AGG | - | chr3_2:30310362-30310381 | None:intergenic | 35.0% | |
| CTAAGAAATTGACTGTTGAG+AGG | - | chr3_2:30310490-30310509 | None:intergenic | 35.0% | |
| AAATGAAGGTAGACAGAAGA+AGG | - | chr3_2:30310583-30310602 | None:intergenic | 35.0% | |
| TTCTTCTGTCTACCTTCATT+TGG | + | chr3_2:30310582-30310601 | Msa0402320:CDS | 35.0% | |
| CATAATCATGCACCAAATGA+AGG | - | chr3_2:30310597-30310616 | None:intergenic | 35.0% | |
| AATTTCTGCAGAAAGTTCCT+TGG | + | chr3_2:30310656-30310675 | Msa0402320:CDS | 35.0% | |
| ACAGCATCAAGAATAACGAT+GGG | - | chr3_2:30310711-30310730 | None:intergenic | 35.0% | |
| CAGTAATCTCTTTCCAAACA+AGG | + | chr3_2:30310747-30310766 | Msa0402320:CDS | 35.0% | |
| TGGAAAACTTTGTCCTTGTT+TGG | - | chr3_2:30310763-30310782 | None:intergenic | 35.0% | |
| ! | AAGTTTTCCATTTCTTAGGC+AGG | + | chr3_2:30310773-30310792 | Msa0402320:CDS | 35.0% |
| ACAAATACCTGCCTAAGAAA+TGG | - | chr3_2:30310783-30310802 | None:intergenic | 35.0% | |
| TTCACCCTACAAACAAAGTT+TGG | + | chr3_2:30310803-30310822 | Msa0402320:CDS | 35.0% | |
| TCACCCTACAAACAAAGTTT+GGG | + | chr3_2:30310804-30310823 | Msa0402320:CDS | 35.0% | |
| ! | ATCCCCAAACTTTGTTTGTA+GGG | - | chr3_2:30310810-30310829 | None:intergenic | 35.0% |
| ! | AATCCCCAAACTTTGTTTGT+AGG | - | chr3_2:30310811-30310830 | None:intergenic | 35.0% |
| AAACACATGTTGAAATGGAC+CGG | - | chr3_2:30310914-30310933 | None:intergenic | 35.0% | |
| CTAATGACATCCTTAAACTC+TGG | + | chr3_2:30311036-30311055 | Msa0402320:CDS | 35.0% | |
| GTAAACACCAATAACTTCTC+CGG | - | chr3_2:30311109-30311128 | None:intergenic | 35.0% | |
| ATTGAGTTTAACCGATGTGT+TGG | + | chr3_2:30311203-30311222 | Msa0402320:CDS | 35.0% | |
| TCAGGTTTGTATAGTATCCA+AGG | - | chr3_2:30311285-30311304 | None:intergenic | 35.0% | |
| TCCTCCTTTCTATGATTGTA+AGG | + | chr3_2:30311368-30311387 | Msa0402320:CDS | 35.0% | |
| TATGATTGTAAGGCTAAGAG+AGG | + | chr3_2:30311378-30311397 | Msa0402320:CDS | 35.0% | |
| ACATTGTGAGGATATGAGTT+GGG | + | chr3_2:30311434-30311453 | Msa0402320:CDS | 35.0% | |
| TGGAGAAGATGGAAGAATGA+AGG | - | chr3_2:30308086-30308105 | None:intergenic | 40.0% | |
| !! | GTTGATGATGATGGAGAAGA+TGG | - | chr3_2:30308097-30308116 | None:intergenic | 40.0% |
| !! | GGAGTTGTAGTTGATGATGA+TGG | - | chr3_2:30308106-30308125 | None:intergenic | 40.0% |
| ! | CCTAATATGAAACACCGACT+CGG | + | chr3_2:30308252-30308271 | Msa0402320:intron | 40.0% |
| CACAAATACTCTCTCGGATT+AGG | - | chr3_2:30308354-30308373 | None:intergenic | 40.0% | |
| ! | AGTCACTTTAGTCCCTGAAT+CGG | + | chr3_2:30308583-30308602 | Msa0402320:intron | 40.0% |
| GACTAATTCCTTCCGATTCA+GGG | - | chr3_2:30308598-30308617 | None:intergenic | 40.0% | |
| TGACTAATTCCTTCCGATTC+AGG | - | chr3_2:30308599-30308618 | None:intergenic | 40.0% | |
| GACTAACGAAGTTTGCATTC+AGG | - | chr3_2:30308691-30308710 | None:intergenic | 40.0% | |
| ACTAACGGAGTCTACATTCA+GGG | - | chr3_2:30308722-30308741 | None:intergenic | 40.0% | |
| TCAGGGACTAAAGTGACTAA+CGG | - | chr3_2:30308827-30308846 | None:intergenic | 40.0% | |
| TCATTCAGGGACTAAAGTGA+CGG | + | chr3_2:30308792-30308811 | Msa0402320:intron | 40.0% | |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | - | chr3_2:30308583-30308602 | None:intergenic | 40.0% |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | - | chr3_2:30308582-30308601 | None:intergenic | 40.0% |
| ! | AGCTAGCTTATAGCTGATAG+TGG | + | chr3_2:30308900-30308919 | Msa0402320:intron | 40.0% |
| TCTTAACCCTCTCTTTGTCA+CGG | + | chr3_2:30309278-30309297 | Msa0402320:intron | 40.0% | |
| TTCGGCCAAGAGATAGTAAA+GGG | + | chr3_2:30309311-30309330 | Msa0402320:intron | 40.0% | |
| TCCGGATAAATCATGCCATA+TGG | + | chr3_2:30309414-30309433 | Msa0402320:intron | 40.0% | |
| !!! | TTTTTTGGAAATGTGGGTGG+AGG | + | chr3_2:30309463-30309482 | Msa0402320:intron | 40.0% |
| AGTCAAAGATGGTTTCAGTC+AGG | + | chr3_2:30309511-30309530 | Msa0402320:intron | 40.0% | |
| !! | TGGTTTTCTGACATTGGCTA+AGG | + | chr3_2:30309615-30309634 | Msa0402320:intron | 40.0% |
| ACTTGAATAGGTCCCTGAAT+TGG | + | chr3_2:30309881-30309900 | Msa0402320:intron | 40.0% | |
| CTTGAATAGGTCCCTGAATT+GGG | + | chr3_2:30309882-30309901 | Msa0402320:intron | 40.0% | |
| !! | TGGGAACTCTTTAGAATCAG+AGG | - | chr3_2:30310065-30310084 | None:intergenic | 40.0% |
| AGCCGGTATCATTCAGTTAA+AGG | + | chr3_2:30310142-30310161 | Msa0402320:CDS | 40.0% | |
| CTTGAAATGAGGTAAGGAGA+TGG | - | chr3_2:30310181-30310200 | None:intergenic | 40.0% | |
| GAAGCTCTCCACAAAAAATG+CGG | + | chr3_2:30310214-30310233 | Msa0402320:CDS | 40.0% | |
| AACTACGTACTTACAGTCTG+GGG | - | chr3_2:30310302-30310321 | None:intergenic | 40.0% | |
| CAAACTACGTACTTACAGTC+TGG | - | chr3_2:30310304-30310323 | None:intergenic | 40.0% | |
| CAGACTGTAAGTACGTAGTT+TGG | + | chr3_2:30310302-30310321 | Msa0402320:CDS | 40.0% | |
| CCAAAAGAACACGATTTGTG+AGG | - | chr3_2:30310390-30310409 | None:intergenic | 40.0% | |
| ! | CCTCACAAATCGTGTTCTTT+TGG | + | chr3_2:30310387-30310406 | Msa0402320:CDS | 40.0% |
| CAGAAATCTGATCACTGTCA+TGG | + | chr3_2:30310517-30310536 | Msa0402320:CDS | 40.0% | |
| !! | GTAGACAGAAGAAGGTACTT+TGG | - | chr3_2:30310575-30310594 | None:intergenic | 40.0% |
| ! | GGTGCATGATTATGATGATG+AGG | + | chr3_2:30310603-30310622 | Msa0402320:CDS | 40.0% |
| GACAGCATCAAGAATAACGA+TGG | - | chr3_2:30310712-30310731 | None:intergenic | 40.0% | |
| ! | CTTGATGCTGTCTTTTGATC+AGG | + | chr3_2:30310720-30310739 | Msa0402320:CDS | 40.0% |
| CACCCTACAAACAAAGTTTG+GGG | + | chr3_2:30310805-30310824 | Msa0402320:CDS | 40.0% | |
| AACACATGTTGAAATGGACC+GGG | - | chr3_2:30310913-30310932 | None:intergenic | 40.0% | |
| TCATGCTTCTTGTCAACATC+AGG | - | chr3_2:30310976-30310995 | None:intergenic | 40.0% | |
| !! | CAGTTTGTTGATATCCCTCA+TGG | - | chr3_2:30311140-30311159 | None:intergenic | 40.0% |
| ACTAGCTCATGGTCTACTTT+CGG | + | chr3_2:30311228-30311247 | Msa0402320:CDS | 40.0% | |
| ! | AAAGGAGGAGCATGAAAACA+CGG | - | chr3_2:30311357-30311376 | None:intergenic | 40.0% |
| GCCTTACAATCATAGAAAGG+AGG | - | chr3_2:30311372-30311391 | None:intergenic | 40.0% | |
| TCCTCATGTAAGACATTGTG+AGG | + | chr3_2:30311422-30311441 | Msa0402320:CDS | 40.0% | |
| TCCTCACAATGTCTTACATG+AGG | - | chr3_2:30311426-30311445 | None:intergenic | 40.0% | |
| GACATTGTGAGGATATGAGT+TGG | + | chr3_2:30311433-30311452 | Msa0402320:CDS | 40.0% | |
| CATTGTGAGGATATGAGTTG+GGG | + | chr3_2:30311435-30311454 | Msa0402320:CDS | 40.0% | |
| AAGCGAGTGGAAGTGAAAAC+AGG | - | chr3_2:30308019-30308038 | None:intergenic | 45.0% | |
| ! | CCGAGTCGGTGTTTCATATT+AGG | - | chr3_2:30308255-30308274 | None:intergenic | 45.0% |
| ACTTTAGTCCCTGAATCGGA+AGG | + | chr3_2:30308587-30308606 | Msa0402320:intron | 45.0% | |
| GACTAACGGAGTCTACATTC+AGG | - | chr3_2:30308723-30308742 | None:intergenic | 45.0% | |
| TCCCTGAAATTGACCATGCA+GGG | + | chr3_2:30308750-30308769 | Msa0402320:intron | 45.0% | |
| TCCCTGCATGGTCAATTTCA+GGG | - | chr3_2:30308754-30308773 | None:intergenic | 45.0% | |
| ATTGCAAAACAGTCCCTGCA+TGG | - | chr3_2:30308766-30308785 | None:intergenic | 45.0% | |
| TCACTACCGTGACAAAGAGA+GGG | - | chr3_2:30309287-30309306 | None:intergenic | 45.0% | |
| TTCACTACCGTGACAAAGAG+AGG | - | chr3_2:30309288-30309307 | None:intergenic | 45.0% | |
| TGTCACGGTAGTGAACAGTT+CGG | + | chr3_2:30309293-30309312 | Msa0402320:intron | 45.0% | |
| GTTCGGCCAAGAGATAGTAA+AGG | + | chr3_2:30309310-30309329 | Msa0402320:intron | 45.0% | |
| GTTTCAGTCAGGATCGAACT+CGG | + | chr3_2:30309522-30309541 | Msa0402320:intron | 45.0% | |
| ! | AGGATCGAACTCGGTTTTTC+CGG | + | chr3_2:30309531-30309550 | Msa0402320:intron | 45.0% |
| ATGATAGATCCTGTCTCAGC+CGG | + | chr3_2:30310125-30310144 | Msa0402320:CDS | 45.0% | |
| AGTCTGGGGACTCACTTAAA+TGG | - | chr3_2:30310288-30310307 | None:intergenic | 45.0% | |
| CATTTAGCGGTTTAGGGAAC+AGG | + | chr3_2:30310329-30310348 | Msa0402320:CDS | 45.0% | |
| ! | AACCAGGAGACATCTGGAAT+CGG | - | chr3_2:30310451-30310470 | None:intergenic | 45.0% |
| TGTTGAGAGGGAAATCAGGA+GGG | - | chr3_2:30310477-30310496 | None:intergenic | 45.0% | |
| TGACTGTTGAGAGGGAAATC+AGG | - | chr3_2:30310481-30310500 | None:intergenic | 45.0% | |
| ! | GCCAACGTTGATGAAAGAGT+CGG | + | chr3_2:30310859-30310878 | Msa0402320:CDS | 45.0% |
| AAAGAGTCGGCATCCAGATT+AGG | + | chr3_2:30310872-30310891 | Msa0402320:CDS | 45.0% | |
| AAGAGTCGGCATCCAGATTA+GGG | + | chr3_2:30310873-30310892 | Msa0402320:CDS | 45.0% | |
| TCGTGTCGAAAACCCTAATC+TGG | - | chr3_2:30310888-30310907 | None:intergenic | 45.0% | |
| TGGGAATATCCAACTGTGAC+CGG | + | chr3_2:30311087-30311106 | Msa0402320:CDS | 45.0% | |
| ATAACTTCTCCGGTCACAGT+TGG | - | chr3_2:30311099-30311118 | None:intergenic | 45.0% | |
| ACTGTGACCGGAGAAGTTAT+TGG | + | chr3_2:30311099-30311118 | Msa0402320:CDS | 45.0% | |
| TGTTTACCAACCAAGCCATG+AGG | + | chr3_2:30311122-30311141 | Msa0402320:CDS | 45.0% | |
| GTTTACCAACCAAGCCATGA+GGG | + | chr3_2:30311123-30311142 | Msa0402320:CDS | 45.0% | |
| TGTTGATATCCCTCATGGCT+TGG | - | chr3_2:30311135-30311154 | None:intergenic | 45.0% | |
| TGAGCTAGTCACCAACACAT+CGG | - | chr3_2:30311217-30311236 | None:intergenic | 45.0% | |
| !! | ATGTGTTGGTGACTAGCTCA+TGG | + | chr3_2:30311217-30311236 | Msa0402320:CDS | 45.0% |
| ATTGACATTGCACGTCGACA+AGG | - | chr3_2:30311330-30311349 | None:intergenic | 45.0% | |
| TTGTCGACGTGCAATGTCAA+TGG | + | chr3_2:30311329-30311348 | Msa0402320:CDS | 45.0% | |
| ! | GGATATGAGTTGGGGTCTTA+AGG | + | chr3_2:30311443-30311462 | Msa0402320:CDS | 45.0% |
| GAGAGAAGCGAATAAGCGAG+TGG | - | chr3_2:30308032-30308051 | None:intergenic | 50.0% | |
| ATCAGTGTCTGTGTCCGAGT+CGG | - | chr3_2:30308269-30308288 | None:intergenic | 50.0% | |
| GTCCCTGAAATTGACCATGC+AGG | + | chr3_2:30308749-30308768 | Msa0402320:intron | 50.0% | |
| GTCCCTGCATGGTCAATTTC+AGG | - | chr3_2:30308755-30308774 | None:intergenic | 50.0% | |
| CTTTAGTCCCTGAATGGGAG+AGG | - | chr3_2:30308820-30308839 | None:intergenic | 50.0% | |
| !! | CTTGGTGGACTTCTAGCATC+TGG | + | chr3_2:30310097-30310116 | Msa0402320:CDS | 50.0% |
| ! | TGAATGATACCGGCTGAGAC+AGG | - | chr3_2:30310137-30310156 | None:intergenic | 50.0% |
| !! | CGTGTTCTTTTGGTTGACCC+TGG | + | chr3_2:30310397-30310416 | Msa0402320:CDS | 50.0% |
| !! | GATCGACCATATCGACTCCA+GGG | - | chr3_2:30310417-30310436 | None:intergenic | 50.0% |
| !! | AGATCGACCATATCGACTCC+AGG | - | chr3_2:30310418-30310437 | None:intergenic | 50.0% |
| ! | AACCGATTCCAGATGTCTCC+TGG | + | chr3_2:30310446-30310465 | Msa0402320:CDS | 50.0% |
| GAAATCAGGAGGGAGAAACC+AGG | - | chr3_2:30310467-30310486 | None:intergenic | 50.0% | |
| CTGTTGAGAGGGAAATCAGG+AGG | - | chr3_2:30310478-30310497 | None:intergenic | 50.0% | |
| ! | GCCGACTCTTTCATCAACGT+TGG | - | chr3_2:30310863-30310882 | None:intergenic | 50.0% |
| !! | GATATCCCTCATGGCTTGGT+TGG | - | chr3_2:30311131-30311150 | None:intergenic | 50.0% |
| TCAGGAGCAGTTTCGTTCTC+AGG | - | chr3_2:30311303-30311322 | None:intergenic | 50.0% | |
| ! | TGACGGATCCTCTCCCATTC+AGG | + | chr3_2:30308809-30308828 | Msa0402320:intron | 55.0% |
| GACGGATCCTCTCCCATTCA+GGG | + | chr3_2:30308810-30308829 | Msa0402320:intron | 55.0% | |
| GGTTGACCCTGGAGTCGATA+TGG | + | chr3_2:30310408-30310427 | Msa0402320:CDS | 55.0% | |
| GGGAGAAACCAGGAGACATC+TGG | - | chr3_2:30310457-30310476 | None:intergenic | 55.0% | |
| ! | AGGGTTTTCGACACGAGACC+CGG | + | chr3_2:30310892-30310911 | Msa0402320:CDS | 55.0% |
| TACTTTCGGCTACGTCGCAC+AGG | + | chr3_2:30311242-30311261 | Msa0402320:CDS | 55.0% | |
| ACTTTCGGCTACGTCGCACA+GGG | + | chr3_2:30311243-30311262 | Msa0402320:CDS | 55.0% | |
| ! | GGCTCGGAGGTTTGAAACCT+TGG | + | chr3_2:30311265-30311284 | Msa0402320:CDS | 55.0% |
| GACATTGCACGTCGACAAGG+AGG | - | chr3_2:30311327-30311346 | None:intergenic | 55.0% | |
| !! | GCTAAGAGAGGCACTGACAC+AGG | + | chr3_2:30311390-30311409 | Msa0402320:CDS | 55.0% |
| CTTTCGGCTACGTCGCACAG+GGG | + | chr3_2:30311244-30311263 | Msa0402320:CDS | 60.0% | |
| GCACGTCGACAAGGAGGATC+AGG | - | chr3_2:30311321-30311340 | None:intergenic | 60.0% | |
| GGCTACGTCGCACAGGGGCT+CGG | + | chr3_2:30311249-30311268 | Msa0402320:CDS | 70.0% | |
| TACGTCGCACAGGGGCTCGG+AGG | + | chr3_2:30311252-30311271 | Msa0402320:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 30307987 | 30311596 | 30307987 | ID=Msa0402320;Name=Msa0402320 |
| chr3_2 | mRNA | 30307987 | 30311596 | 30307987 | ID=Msa0402320-mRNA-1;Parent=Msa0402320;Name=Msa0402320-mRNA-1;_AED=0.01;_eAED=0.01;_QI=5|1|1|1|1|1|2|102|540 |
| chr3_2 | exon | 30307987 | 30308166 | 30307987 | ID=Msa0402320-mRNA-1:exon:6070;Parent=Msa0402320-mRNA-1 |
| chr3_2 | exon | 30310047 | 30311596 | 30310047 | ID=Msa0402320-mRNA-1:exon:6071;Parent=Msa0402320-mRNA-1 |
| chr3_2 | five_prime_UTR | 30307987 | 30307991 | 30307987 | ID=Msa0402320-mRNA-1:five_prime_utr;Parent=Msa0402320-mRNA-1 |
| chr3_2 | CDS | 30307992 | 30308166 | 30307992 | ID=Msa0402320-mRNA-1:cds;Parent=Msa0402320-mRNA-1 |
| chr3_2 | CDS | 30310047 | 30311494 | 30310047 | ID=Msa0402320-mRNA-1:cds;Parent=Msa0402320-mRNA-1 |
| chr3_2 | three_prime_UTR | 30311495 | 30311596 | 30311495 | ID=Msa0402320-mRNA-1:three_prime_utr;Parent=Msa0402320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
