Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623710 | XP_013459426.1 | 97.222 | 540 | 15 | 0 | 1 | 540 | 1 | 540 | 0.0 | 1091 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623710 | sp|Q9M5Q1|FUT1_PEA | 77.247 | 523 | 112 | 2 | 16 | 535 | 47 | 565 | 0.0 | 844 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0623710 | Msa0626450 | 0.811943 | 5.435874e-51 | -8.615850e-47 |
| Msa0623710 | Msa0626490 | 0.807779 | 4.278877e-50 | -8.615850e-47 |
| Msa0623710 | Msa0664600 | 0.809745 | 1.625240e-50 | -8.615850e-47 |
| Msa0623710 | Msa0815960 | 0.804718 | 1.887999e-49 | -8.615850e-47 |
| Msa0623710 | Msa0861510 | 0.807123 | 5.895539e-50 | -8.615850e-47 |
| Msa0623710 | Msa0861600 | 0.814098 | 1.831387e-51 | -8.615850e-47 |
| Msa0623710 | Msa0866520 | 0.800758 | 1.239941e-48 | -8.615850e-47 |
| Msa0623710 | Msa1348090 | 0.803099 | 4.098119e-49 | -8.615850e-47 |
| Msa0623710 | Msa1397820 | 0.996295 | 9.823281e-226 | -8.615850e-47 |
| Msa0623710 | Msa1440960 | 0.803662 | 3.132940e-49 | -8.615850e-47 |
| Msa0402320 | Msa0623710 | 0.952846 | 1.001167e-110 | -8.615850e-47 |
| Msa0337700 | Msa0623710 | 0.809116 | 2.218343e-50 | -8.615850e-47 |
| Msa0355260 | Msa0623710 | 0.963274 | 6.934761e-122 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623710 | MtrunA17_Chr3g0091781 | 97.222 | 540 | 15 | 0 | 1 | 540 | 1 | 540 | 0.0 | 1091 |
| Msa0623710 | MtrunA17_Chr4g0060941 | 76.852 | 540 | 117 | 4 | 3 | 535 | 38 | 576 | 0.0 | 855 |
| Msa0623710 | MtrunA17_Chr8g0388711 | 50.638 | 470 | 221 | 4 | 73 | 536 | 120 | 584 | 8.31e-165 | 480 |
| Msa0623710 | MtrunA17_Chr1g0196981 | 50.106 | 471 | 221 | 4 | 73 | 535 | 22 | 486 | 1.06e-164 | 476 |
| Msa0623710 | MtrunA17_Chr2g0286741 | 44.515 | 474 | 243 | 8 | 72 | 534 | 111 | 575 | 1.70e-134 | 402 |
| Msa0623710 | MtrunA17_Chr4g0001511 | 43.949 | 471 | 247 | 7 | 72 | 535 | 249 | 709 | 2.83e-130 | 396 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623710 | AT2G03220.1 | 62.642 | 530 | 175 | 4 | 14 | 533 | 42 | 558 | 0.0 | 681 |
| Msa0623710 | AT2G03210.2 | 58.252 | 515 | 193 | 7 | 31 | 535 | 70 | 572 | 0.0 | 620 |
| Msa0623710 | AT2G03210.1 | 58.252 | 515 | 193 | 7 | 31 | 535 | 36 | 538 | 0.0 | 620 |
| Msa0623710 | AT2G03210.3 | 60.163 | 492 | 179 | 6 | 60 | 535 | 79 | 569 | 0.0 | 619 |
| Msa0623710 | AT1G14100.1 | 55.268 | 503 | 205 | 7 | 48 | 536 | 20 | 516 | 0.0 | 551 |
| Msa0623710 | AT1G14080.1 | 53.144 | 493 | 217 | 5 | 55 | 535 | 46 | 536 | 0.0 | 538 |
| Msa0623710 | AT2G15350.1 | 52.130 | 493 | 222 | 9 | 55 | 535 | 23 | 513 | 2.42e-177 | 510 |
| Msa0623710 | AT2G15390.1 | 51.760 | 483 | 221 | 6 | 64 | 535 | 21 | 502 | 4.34e-177 | 509 |
| Msa0623710 | AT2G15390.2 | 51.767 | 481 | 220 | 6 | 65 | 534 | 54 | 533 | 9.92e-177 | 509 |
| Msa0623710 | AT2G15370.1 | 50.840 | 476 | 225 | 6 | 69 | 535 | 57 | 532 | 7.77e-169 | 489 |
| Msa0623710 | AT1G14110.1 | 51.452 | 482 | 182 | 6 | 60 | 534 | 33 | 469 | 9.36e-168 | 484 |
| Msa0623710 | AT1G74420.2 | 49.000 | 500 | 229 | 10 | 16 | 506 | 42 | 524 | 3.96e-161 | 469 |
| Msa0623710 | AT1G74420.3 | 49.000 | 500 | 229 | 10 | 16 | 506 | 80 | 562 | 3.43e-160 | 468 |
| Msa0623710 | AT1G74420.1 | 49.004 | 502 | 222 | 11 | 16 | 506 | 42 | 520 | 4.13e-160 | 466 |
| Msa0623710 | AT1G74420.4 | 49.004 | 502 | 222 | 11 | 16 | 506 | 80 | 558 | 3.21e-159 | 465 |
Find 120 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGAAATAACCAGAGTTTA+AGG | 0.121631 | 4_3:+1021616 | None:intergenic |
| TGGATTTCATTTAGCGGTTT+AGG | 0.197340 | 4_3:-1022340 | Msa0623710:CDS |
| CCTCACAAATCGTGTTCTTT+TGG | 0.256519 | 4_3:-1022275 | Msa0623710:CDS |
| CCACCAAGTAGTTTATCTTT+TGG | 0.261850 | 4_3:+1022580 | None:intergenic |
| TGGAAAACTTTGTCCTTGTT+TGG | 0.264766 | 4_3:+1021902 | None:intergenic |
| AGCCGGTATCATTCAGTTAA+AGG | 0.272487 | 4_3:-1022520 | Msa0623710:CDS |
| TTATTGTAGGATTCGGTATA+AGG | 0.276356 | 4_3:+1022424 | None:intergenic |
| TTCACCCTACAAACAAAGTT+TGG | 0.276712 | 4_3:-1021859 | Msa0623710:CDS |
| CATTCAGTTAAAGGACTATC+AGG | 0.303102 | 4_3:-1022511 | Msa0623710:CDS |
| GGATTTCATTTAGCGGTTTA+GGG | 0.303332 | 4_3:-1022339 | Msa0623710:CDS |
| AATATAGCATGCACTCAATA+TGG | 0.323248 | 4_3:+1021075 | None:intergenic |
| AATCTTAGCTTGTACTTTGA+AGG | 0.325331 | 4_3:-1021723 | Msa0623710:CDS |
| GGATATGAGTTGGGGTCTTA+AGG | 0.326106 | 4_3:-1021219 | Msa0623710:CDS |
| ACAGTAAAAGATCTCAATTC+TGG | 0.327111 | 4_3:-1022400 | Msa0623710:CDS |
| AGATGAAGAAGACTAGTTGT+AGG | 0.331724 | 4_3:+1024540 | None:intergenic |
| AGTCTGGGGACTCACTTAAA+TGG | 0.332705 | 4_3:+1022377 | None:intergenic |
| GACAAGAAGCATGATAATAT+TGG | 0.332745 | 4_3:-1021680 | Msa0623710:CDS |
| TTCTTCTGTCTACCTTCATT+TGG | 0.339147 | 4_3:-1022080 | Msa0623710:CDS |
| CATTTAGCGGTTTAGGGAAC+AGG | 0.347183 | 4_3:-1022333 | Msa0623710:CDS |
| TGAAAACAGGAACATTTCTA+TGG | 0.353966 | 4_3:+1024661 | None:intergenic |
| TCACCCTACAAACAAAGTTT+GGG | 0.356509 | 4_3:-1021858 | Msa0623710:CDS |
| AATCCCCAAACTTTGTTTGT+AGG | 0.359650 | 4_3:+1021854 | None:intergenic |
| TGATCAAACACATGTTGAAA+TGG | 0.363067 | 4_3:+1021746 | None:intergenic |
| GGTTGACCCTGGAGTCGATA+TGG | 0.378603 | 4_3:-1022254 | Msa0623710:CDS |
| AAGAGTCGGCATCCAGATTA+GGG | 0.381150 | 4_3:-1021789 | Msa0623710:CDS |
| AAAGAGTCGGCATCCAGATT+AGG | 0.381207 | 4_3:-1021790 | Msa0623710:CDS |
| TCAGGAGCAGTTTCGTTCTC+AGG | 0.396736 | 4_3:+1021362 | None:intergenic |
| CAAACTACGTACTTACAGTC+TGG | 0.400090 | 4_3:+1022361 | None:intergenic |
| TCCTCCTTTCTATGATTGTA+AGG | 0.401474 | 4_3:-1021294 | Msa0623710:CDS |
| CAGACTGTAAGTACGTAGTT+TGG | 0.407993 | 4_3:-1022360 | Msa0623710:CDS |
| ACAAATACCTGCCTAAGAAA+TGG | 0.409190 | 4_3:+1021882 | None:intergenic |
| TCGTGTCGAAAACCCTAATC+TGG | 0.411005 | 4_3:+1021777 | None:intergenic |
| GGGAGAAACCAGGAGACATC+TGG | 0.412994 | 4_3:+1022208 | None:intergenic |
| GGCTACGTCGCACAGGGGCT+CGG | 0.431212 | 4_3:-1021413 | Msa0623710:CDS |
| TGACTGTTGAGAGGGAAATC+AGG | 0.431783 | 4_3:+1022184 | None:intergenic |
| CTTGGTGGACTTCTAGCATC+TGG | 0.432274 | 4_3:-1022565 | Msa0623710:CDS |
| GGCTCGGAGGTTTGAAACCT+TGG | 0.432875 | 4_3:-1021397 | Msa0623710:CDS |
| TCATGCTTCTTGTCAACATC+AGG | 0.434329 | 4_3:+1021689 | None:intergenic |
| ACTAGCTCATGGTCTACTTT+CGG | 0.435497 | 4_3:-1021434 | Msa0623710:CDS |
| ATCCCCAAACTTTGTTTGTA+GGG | 0.440499 | 4_3:+1021855 | None:intergenic |
| CAGTTTGTTGATATCCCTCA+TGG | 0.442703 | 4_3:+1021525 | None:intergenic |
| ATGCACTCAATATGGAGTTA+TGG | 0.449948 | 4_3:+1021083 | None:intergenic |
| ACATTGTGAGGATATGAGTT+GGG | 0.455716 | 4_3:-1021228 | Msa0623710:CDS |
| TACTTTCGGCTACGTCGCAC+AGG | 0.456550 | 4_3:-1021420 | Msa0623710:CDS |
| AAAAGTAAGAGACATGTATT+GGG | 0.462487 | 4_3:-1021594 | Msa0623710:CDS |
| GCACGTCGACAAGGAGGATC+AGG | 0.467846 | 4_3:+1021344 | None:intergenic |
| AAGCGAGTGGAAGTGAAAAC+AGG | 0.468053 | 4_3:+1024648 | None:intergenic |
| AATTTCTGCAGAAAGTTCCT+TGG | 0.468138 | 4_3:-1022006 | Msa0623710:CDS |
| TAGTTATTGAAGTTATGAAT+TGG | 0.473063 | 4_3:-1021177 | Msa0623710:exon |
| TTGTCGACGTGCAATGTCAA+TGG | 0.481831 | 4_3:-1021333 | Msa0623710:CDS |
| AACCGATTCCAGATGTCTCC+TGG | 0.488031 | 4_3:-1022216 | Msa0623710:CDS |
| AAACACATGTTGAAATGGAC+CGG | 0.499080 | 4_3:+1021751 | None:intergenic |
| GAAATCAGGAGGGAGAAACC+AGG | 0.499580 | 4_3:+1022198 | None:intergenic |
| GTAGACAGAAGAAGGTACTT+TGG | 0.501837 | 4_3:+1022090 | None:intergenic |
| TGTTGATATCCCTCATGGCT+TGG | 0.503548 | 4_3:+1021530 | None:intergenic |
| GTTGATGATGATGGAGAAGA+TGG | 0.505194 | 4_3:+1024570 | None:intergenic |
| TGGAGAAGATGGAAGAATGA+AGG | 0.510549 | 4_3:+1024581 | None:intergenic |
| GTCCTTTAACTGAATGATAC+CGG | 0.510788 | 4_3:+1022518 | None:intergenic |
| TCAGGTTTGTATAGTATCCA+AGG | 0.511855 | 4_3:+1021380 | None:intergenic |
| GACATTGTGAGGATATGAGT+TGG | 0.512210 | 4_3:-1021229 | Msa0623710:CDS |
| TGGGAATATCCAACTGTGAC+CGG | 0.515749 | 4_3:-1021575 | Msa0623710:CDS |
| CGTAATCTTGAAATGAGGTA+AGG | 0.517518 | 4_3:+1022478 | None:intergenic |
| TGAATGATACCGGCTGAGAC+AGG | 0.522502 | 4_3:+1022528 | None:intergenic |
| ACTGTGACCGGAGAAGTTAT+TGG | 0.523131 | 4_3:-1021563 | Msa0623710:CDS |
| GGAGTTGTAGTTGATGATGA+TGG | 0.523701 | 4_3:+1024561 | None:intergenic |
| GTAAACACCAATAACTTCTC+CGG | 0.525651 | 4_3:+1021556 | None:intergenic |
| CTAATGACATCCTTAAACTC+TGG | 0.526399 | 4_3:-1021626 | Msa0623710:CDS |
| CATAATCATGCACCAAATGA+AGG | 0.526474 | 4_3:+1022068 | None:intergenic |
| TGGGAACTCTTTAGAATCAG+AGG | 0.528580 | 4_3:+1022600 | None:intergenic |
| AGATCGACCATATCGACTCC+AGG | 0.528983 | 4_3:+1022247 | None:intergenic |
| TTCCCAAAAGATAAACTACT+TGG | 0.532835 | 4_3:-1022583 | Msa0623710:CDS |
| AACCAGGAGACATCTGGAAT+CGG | 0.534399 | 4_3:+1022214 | None:intergenic |
| AAACTACGTACTTACAGTCT+GGG | 0.536165 | 4_3:+1022362 | None:intergenic |
| AAATGAAGGTAGACAGAAGA+AGG | 0.539324 | 4_3:+1022082 | None:intergenic |
| CAGAAATCTGATCACTGTCA+TGG | 0.540196 | 4_3:-1022145 | Msa0623710:CDS |
| CCAAAAGATAAACTACTTGG+TGG | 0.541266 | 4_3:-1022580 | Msa0623710:CDS |
| TTAGCCTTACAATCATAGAA+AGG | 0.543257 | 4_3:+1021290 | None:intergenic |
| GTAGTTTGGATTTCATTTAG+CGG | 0.558001 | 4_3:-1022346 | Msa0623710:CDS |
| ATGATAGATCCTGTCTCAGC+CGG | 0.563399 | 4_3:-1022537 | Msa0623710:CDS |
| GATATCCCTCATGGCTTGGT+TGG | 0.563961 | 4_3:+1021534 | None:intergenic |
| CTTGAAATGAGGTAAGGAGA+TGG | 0.564341 | 4_3:+1022484 | None:intergenic |
| CAGTAATCTCTTTCCAAACA+AGG | 0.565980 | 4_3:-1021915 | Msa0623710:CDS |
| ATAACTTCTCCGGTCACAGT+TGG | 0.569629 | 4_3:+1021566 | None:intergenic |
| ATACAGAAATGCAGAAGCTA+AGG | 0.572547 | 4_3:+1022303 | None:intergenic |
| TCCTCATGTAAGACATTGTG+AGG | 0.572556 | 4_3:-1021240 | Msa0623710:CDS |
| TAAGAAATTGACTGTTGAGA+GGG | 0.572937 | 4_3:+1022176 | None:intergenic |
| GACAGCATCAAGAATAACGA+TGG | 0.573964 | 4_3:+1021953 | None:intergenic |
| ATTGAGTTTAACCGATGTGT+TGG | 0.587338 | 4_3:-1021459 | Msa0623710:CDS |
| CTAAGAAATTGACTGTTGAG+AGG | 0.591251 | 4_3:+1022175 | None:intergenic |
| ATCTTCGTAATCTTGAAATG+AGG | 0.597371 | 4_3:+1022473 | None:intergenic |
| GCCGACTCTTTCATCAACGT+TGG | 0.598421 | 4_3:+1021802 | None:intergenic |
| CTCAAACAAAATCAACAACT+AGG | 0.602192 | 4_3:-1024519 | Msa0623710:intron |
| ACTTTCGGCTACGTCGCACA+GGG | 0.602869 | 4_3:-1021419 | Msa0623710:CDS |
| ATTCAGTTAAAGGACTATCA+GGG | 0.603770 | 4_3:-1022510 | Msa0623710:CDS |
| GCTAAGAGAGGCACTGACAC+AGG | 0.606195 | 4_3:-1021272 | Msa0623710:CDS |
| CACCCTACAAACAAAGTTTG+GGG | 0.613565 | 4_3:-1021857 | Msa0623710:CDS |
| TATGATTGTAAGGCTAAGAG+AGG | 0.617643 | 4_3:-1021284 | Msa0623710:CDS |
| TCCTAAAGCAAAATAACTAG+TGG | 0.619595 | 4_3:+1021151 | None:intergenic |
| ATTGACATTGCACGTCGACA+AGG | 0.621481 | 4_3:+1021335 | None:intergenic |
| GCCAACGTTGATGAAAGAGT+CGG | 0.622353 | 4_3:-1021803 | Msa0623710:CDS |
| GTTTACCAACCAAGCCATGA+GGG | 0.622486 | 4_3:-1021539 | Msa0623710:CDS |
| ACAGCATCAAGAATAACGAT+GGG | 0.630626 | 4_3:+1021954 | None:intergenic |
| CTGTTGAGAGGGAAATCAGG+AGG | 0.631751 | 4_3:+1022187 | None:intergenic |
| AACACATGTTGAAATGGACC+GGG | 0.633166 | 4_3:+1021752 | None:intergenic |
| CATTGTGAGGATATGAGTTG+GGG | 0.637118 | 4_3:-1021227 | Msa0623710:CDS |
| ATGTGTTGGTGACTAGCTCA+TGG | 0.637268 | 4_3:-1021445 | Msa0623710:CDS |
| GGTGCATGATTATGATGATG+AGG | 0.640848 | 4_3:-1022059 | Msa0623710:CDS |
| GCCTTACAATCATAGAAAGG+AGG | 0.644238 | 4_3:+1021293 | None:intergenic |
| GATCGACCATATCGACTCCA+GGG | 0.646501 | 4_3:+1022248 | None:intergenic |
| TCCTCACAATGTCTTACATG+AGG | 0.647592 | 4_3:+1021239 | None:intergenic |
| CCAAAAGAACACGATTTGTG+AGG | 0.650604 | 4_3:+1022275 | None:intergenic |
| AACTACGTACTTACAGTCTG+GGG | 0.654367 | 4_3:+1022363 | None:intergenic |
| TGTTGAGAGGGAAATCAGGA+GGG | 0.662386 | 4_3:+1022188 | None:intergenic |
| TACGTCGCACAGGGGCTCGG+AGG | 0.665321 | 4_3:-1021410 | Msa0623710:CDS |
| TGTTTACCAACCAAGCCATG+AGG | 0.669655 | 4_3:-1021540 | Msa0623710:CDS |
| GAGAGAAGCGAATAAGCGAG+TGG | 0.671149 | 4_3:+1024635 | None:intergenic |
| AAAGGAGGAGCATGAAAACA+CGG | 0.681859 | 4_3:+1021308 | None:intergenic |
| GACATTGCACGTCGACAAGG+AGG | 0.696138 | 4_3:+1021338 | None:intergenic |
| TGAGCTAGTCACCAACACAT+CGG | 0.705484 | 4_3:+1021448 | None:intergenic |
| CTTTCGGCTACGTCGCACAG+GGG | 0.764738 | 4_3:-1021418 | Msa0623710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAATGCACTTTTTAATT+TGG | - | chr4_3:1021303-1021322 | Msa0623710:CDS | 15.0% |
| !!! | ATATATTTTTAAGTTCTGTT+TGG | - | chr4_3:1021645-1021664 | Msa0623710:CDS | 15.0% |
| !!! | TTTTTTTCAATTAAAATTGC+AGG | - | chr4_3:1022127-1022146 | Msa0623710:CDS | 15.0% |
| !!! | TTTTTTCAATTAAAATTGCA+GGG | - | chr4_3:1022128-1022147 | Msa0623710:CDS | 15.0% |
| !!! | AACTATTTGATTGTTTTTTA+TGG | - | chr4_3:1022698-1022717 | Msa0623710:intron | 15.0% |
| !! | TTCTATTTGATAAATAGTTA+AGG | - | chr4_3:1022830-1022849 | Msa0623710:intron | 15.0% |
| !! | ATAACAAAGTTCTTAAAAAA+TGG | - | chr4_3:1022914-1022933 | Msa0623710:intron | 15.0% |
| !! | TTTCATATTATTTGGTTATT+AGG | - | chr4_3:1023128-1023147 | Msa0623710:intron | 15.0% |
| !! | ATGTAACGTTTAATTCAATT+TGG | - | chr4_3:1021590-1021609 | Msa0623710:CDS | 20.0% |
| !! | ATATGATCTAATAACGTAAA+AGG | + | chr4_3:1021622-1021641 | None:intergenic | 20.0% |
| !!! | ATAATCCGCTATATATTTTA+CGG | + | chr4_3:1021956-1021975 | None:intergenic | 20.0% |
| !!! | TTTTTCAATTAAAATTGCAG+GGG | - | chr4_3:1022129-1022148 | Msa0623710:CDS | 20.0% |
| !! | AGTTACTTGAATTAACTTAT+CGG | - | chr4_3:1022197-1022216 | Msa0623710:CDS | 20.0% |
| !!! | TATAACTAAAAAGACTTGTT+TGG | + | chr4_3:1022278-1022297 | None:intergenic | 20.0% |
| !! | AGATCCTTAATGTATTATAA+GGG | - | chr4_3:1022340-1022359 | Msa0623710:CDS | 20.0% |
| !!! | GCATATATAAAGTGATTTTT+GGG | + | chr4_3:1022453-1022472 | None:intergenic | 20.0% |
| !!! | TGCATATATAAAGTGATTTT+TGG | + | chr4_3:1022454-1022473 | None:intergenic | 20.0% |
| !! | CAAAAAATTAAACTTGGATT+TGG | + | chr4_3:1022553-1022572 | None:intergenic | 20.0% |
| !!! | CAAATCCAAGTTTAATTTTT+TGG | - | chr4_3:1022551-1022570 | Msa0623710:CDS | 20.0% |
| !! | CATTTCCAAAAAATTAAACT+TGG | + | chr4_3:1022559-1022578 | None:intergenic | 20.0% |
| !!! | AGTTTAATTTTTTGGAAATG+TGG | - | chr4_3:1022559-1022578 | Msa0623710:CDS | 20.0% |
| !!! | GTTTAATTTTTTGGAAATGT+GGG | - | chr4_3:1022560-1022579 | Msa0623710:CDS | 20.0% |
| !! | CATAGAAAAAAGAAATATCA+AGG | + | chr4_3:1022800-1022819 | None:intergenic | 20.0% |
| !!! | CTTGATATTTCTTTTTTCTA+TGG | - | chr4_3:1022798-1022817 | Msa0623710:intron | 20.0% |
| !!! | ATTTTCAAAATCAAGATTCA+AGG | + | chr4_3:1022882-1022901 | None:intergenic | 20.0% |
| !! | AACCAATAAATGCATAAAAT+AGG | + | chr4_3:1023055-1023074 | None:intergenic | 20.0% |
| !! | TGATAGAGTTTCATATTATT+TGG | - | chr4_3:1023120-1023139 | Msa0623710:intron | 20.0% |
| !!! | ATCTTTTACTGTTTTATTGT+AGG | + | chr4_3:1023357-1023376 | None:intergenic | 20.0% |
| !! | TAGTTATTGAAGTTATGAAT+TGG | - | chr4_3:1024588-1024607 | Msa0623710:CDS | 20.0% |
| ! | AGTGCATTATATTAATGAAG+AGG | + | chr4_3:1021295-1021314 | None:intergenic | 25.0% |
| ! | TTACAATTTATCTGCATTCA+GGG | + | chr4_3:1021731-1021750 | None:intergenic | 25.0% |
| ! | TTTACAATTTATCTGCATTC+AGG | + | chr4_3:1021732-1021751 | None:intergenic | 25.0% |
| !! | TAATCCGCTATATATTTTAC+GGG | + | chr4_3:1021955-1021974 | None:intergenic | 25.0% |
| ! | GTAGTGTTTGATTAAATTAG+CGG | - | chr4_3:1022046-1022065 | Msa0623710:CDS | 25.0% |
| ! | TAATACATTAAGGATCTGTT+TGG | + | chr4_3:1022337-1022356 | None:intergenic | 25.0% |
| ! | CAGATCCTTAATGTATTATA+AGG | - | chr4_3:1022339-1022358 | Msa0623710:CDS | 25.0% |
| ! | CAAACCCTTATAATACATTA+AGG | + | chr4_3:1022347-1022366 | None:intergenic | 25.0% |
| !!! | TATATAAAGTGATTTTTGGG+TGG | + | chr4_3:1022450-1022469 | None:intergenic | 25.0% |
| ! | ACTTTATATATGCACACATT+TGG | - | chr4_3:1022460-1022479 | Msa0623710:CDS | 25.0% |
| !! | AGTGTTTGAAATTACAATTC+CGG | - | chr4_3:1022499-1022518 | Msa0623710:CDS | 25.0% |
| ! | TTAGTTAAGATTGAATCAAC+CGG | + | chr4_3:1022656-1022675 | None:intergenic | 25.0% |
| !! | TTTTTATGGTTTTCTGACAT+TGG | - | chr4_3:1022712-1022731 | Msa0623710:intron | 25.0% |
| ! | TTAAAAAATGGACAATAGAG+AGG | - | chr4_3:1022926-1022945 | Msa0623710:intron | 25.0% |
| ! | TAAAAAATGGACAATAGAGA+GGG | - | chr4_3:1022927-1022946 | Msa0623710:intron | 25.0% |
| !! | ATCTTTTTGGATACTTGAAT+AGG | - | chr4_3:1022972-1022991 | Msa0623710:intron | 25.0% |
| !! | GTCCTATTTTATGCATTTAT+TGG | - | chr4_3:1023050-1023069 | Msa0623710:intron | 25.0% |
| !!! | TGCATTTATTGGTTTTCTAT+TGG | - | chr4_3:1023061-1023080 | Msa0623710:intron | 25.0% |
| !! | TTTCTCATTTGCATAACTTT+TGG | - | chr4_3:1023089-1023108 | Msa0623710:intron | 25.0% |
| !!! | TACTGTTTTATTGTAGGATT+CGG | + | chr4_3:1023351-1023370 | None:intergenic | 25.0% |
| !! | AAAAAATTTGAAGTCGAAAG+CGG | - | chr4_3:1024114-1024133 | Msa0623710:intron | 25.0% |
| ! | AAAAAGTAAGAGACATGTAT+TGG | - | chr4_3:1024170-1024189 | Msa0623710:intron | 25.0% |
| ! | AAAAGTAAGAGACATGTATT+GGG | - | chr4_3:1024171-1024190 | Msa0623710:intron | 25.0% |
| ! | AAATACACAATCAAAAAGCT+TGG | - | chr4_3:1024269-1024288 | Msa0623710:intron | 25.0% |
| ! | AATACACAATCAAAAAGCTT+GGG | - | chr4_3:1024270-1024289 | Msa0623710:intron | 25.0% |
| TGAAAACAGGAACATTTCTA+TGG | + | chr4_3:1021107-1021126 | None:intergenic | 30.0% | |
| CTCAAACAAAATCAACAACT+AGG | - | chr4_3:1021246-1021265 | Msa0623710:CDS | 30.0% | |
| ATGAAACACAAATACTCTCT+CGG | + | chr4_3:1021461-1021480 | None:intergenic | 30.0% | |
| !! | AGAGAGTATTTGTGTTTCAT+AGG | - | chr4_3:1021461-1021480 | Msa0623710:CDS | 30.0% |
| GTATTTGTGTTTCATAGGAT+TGG | - | chr4_3:1021466-1021485 | Msa0623710:CDS | 30.0% | |
| AGTTCTGTTTGGTACAATAT+AGG | - | chr4_3:1021656-1021675 | Msa0623710:CDS | 30.0% | |
| GTTCTGTTTGGTACAATATA+GGG | - | chr4_3:1021657-1021676 | Msa0623710:CDS | 30.0% | |
| TTCTGTTTGGTACAATATAG+GGG | - | chr4_3:1021658-1021677 | Msa0623710:CDS | 30.0% | |
| ACTAACAAAGTCTACATTCA+GGG | + | chr4_3:1021760-1021779 | None:intergenic | 30.0% | |
| TTTGCAATTTCTCTTCATTC+AGG | - | chr4_3:1021880-1021899 | Msa0623710:CDS | 30.0% | |
| TTGCAATTTCTCTTCATTCA+GGG | - | chr4_3:1021881-1021900 | Msa0623710:CDS | 30.0% | |
| ATTCCCCGTAAAATATATAG+CGG | - | chr4_3:1021948-1021967 | Msa0623710:CDS | 30.0% | |
| ! | AATCCGCTATATATTTTACG+GGG | + | chr4_3:1021954-1021973 | None:intergenic | 30.0% |
| TTTCAAACACTTAGAAGTTG+TGG | + | chr4_3:1022490-1022509 | None:intergenic | 30.0% | |
| !!! | TAATTTTTTGGAAATGTGGG+TGG | - | chr4_3:1022563-1022582 | Msa0623710:CDS | 30.0% |
| ATCAAATAGTTGAGCTGATA+TGG | + | chr4_3:1022689-1022708 | None:intergenic | 30.0% | |
| ATCCAAAAAGATAGTCTACA+TGG | + | chr4_3:1022964-1022983 | None:intergenic | 30.0% | |
| AAAACTAACATCCCAATTCA+GGG | + | chr4_3:1022999-1023018 | None:intergenic | 30.0% | |
| AAAAACTAACATCCCAATTC+AGG | + | chr4_3:1023000-1023019 | None:intergenic | 30.0% | |
| TTCCCAAAAGATAAACTACT+TGG | - | chr4_3:1023182-1023201 | Msa0623710:intron | 30.0% | |
| ! | CACCAAGTAGTTTATCTTTT+GGG | + | chr4_3:1023187-1023206 | None:intergenic | 30.0% |
| ATTCAGTTAAAGGACTATCA+GGG | - | chr4_3:1023255-1023274 | Msa0623710:intron | 30.0% | |
| ATCTTCGTAATCTTGAAATG+AGG | + | chr4_3:1023295-1023314 | None:intergenic | 30.0% | |
| ! | TTATTGTAGGATTCGGTATA+AGG | + | chr4_3:1023344-1023363 | None:intergenic | 30.0% |
| ACAGTAAAAGATCTCAATTC+TGG | - | chr4_3:1023365-1023384 | Msa0623710:intron | 30.0% | |
| GTAGTTTGGATTTCATTTAG+CGG | - | chr4_3:1023419-1023438 | Msa0623710:intron | 30.0% | |
| TAAGAAATTGACTGTTGAGA+GGG | + | chr4_3:1023592-1023611 | None:intergenic | 30.0% | |
| ! | TCTGTTTTCATCATTAACCA+AGG | + | chr4_3:1023779-1023798 | None:intergenic | 30.0% |
| ! | GACAAAGTTTTCCATTTCTT+AGG | - | chr4_3:1023872-1023891 | Msa0623710:intron | 30.0% |
| TGATCAAACACATGTTGAAA+TGG | + | chr4_3:1024022-1024041 | None:intergenic | 30.0% | |
| !! | AATCTTAGCTTGTACTTTGA+AGG | - | chr4_3:1024042-1024061 | Msa0623710:intron | 30.0% |
| ! | GACAAGAAGCATGATAATAT+TGG | - | chr4_3:1024085-1024104 | Msa0623710:intron | 30.0% |
| TTCGAAATAACCAGAGTTTA+AGG | + | chr4_3:1024152-1024171 | None:intergenic | 30.0% | |
| !! | TTAGCCTTACAATCATAGAA+AGG | + | chr4_3:1024478-1024497 | None:intergenic | 30.0% |
| !! | ACCACTAGTTATTTTGCTTT+AGG | - | chr4_3:1024613-1024632 | Msa0623710:CDS | 30.0% |
| TCCTAAAGCAAAATAACTAG+TGG | + | chr4_3:1024617-1024636 | None:intergenic | 30.0% | |
| ! | AGATGAAGAAGACTAGTTGT+AGG | + | chr4_3:1021228-1021247 | None:intergenic | 35.0% |
| TTGTGTTTCATAGGATTGGA+TGG | - | chr4_3:1021470-1021489 | Msa0623710:CDS | 35.0% | |
| GACTAACAAAGTCTACATTC+AGG | + | chr4_3:1021761-1021780 | None:intergenic | 35.0% | |
| ACTAACGAAGTTTGCATTCA+GGG | + | chr4_3:1021792-1021811 | None:intergenic | 35.0% | |
| ! | CGGATTATATGCTAGCTTAT+AGG | - | chr4_3:1021968-1021987 | Msa0623710:CDS | 35.0% |
| !! | ATAGCTGATAGTGGATAAAC+TGG | - | chr4_3:1022011-1022030 | Msa0623710:CDS | 35.0% |
| TTTCTCCCTTTACTATCTCT+TGG | + | chr4_3:1022422-1022441 | None:intergenic | 35.0% | |
| TCCATATGGCATGATTTATC+CGG | + | chr4_3:1022521-1022540 | None:intergenic | 35.0% | |
| ! | TTTGGAAGTGTACTTCCATA+TGG | + | chr4_3:1022535-1022554 | None:intergenic | 35.0% |
| TTGACTAGACTATTGCTTAC+AGG | + | chr4_3:1022600-1022619 | None:intergenic | 35.0% | |
| AGCAATAGTCTAGTCAAAGA+TGG | - | chr4_3:1022603-1022622 | Msa0623710:CDS | 35.0% | |
| ! | GACCATGTAGACTATCTTTT+TGG | - | chr4_3:1022959-1022978 | Msa0623710:intron | 35.0% |
| TACTTGTTTACATGCTCTGT+TGG | - | chr4_3:1023026-1023045 | Msa0623710:intron | 35.0% | |
| ! | CCACCAAGTAGTTTATCTTT+TGG | + | chr4_3:1023188-1023207 | None:intergenic | 35.0% |
| CCAAAAGATAAACTACTTGG+TGG | - | chr4_3:1023185-1023204 | Msa0623710:intron | 35.0% | |
| GTCCTTTAACTGAATGATAC+CGG | + | chr4_3:1023250-1023269 | None:intergenic | 35.0% | |
| CATTCAGTTAAAGGACTATC+AGG | - | chr4_3:1023254-1023273 | Msa0623710:intron | 35.0% | |
| CGTAATCTTGAAATGAGGTA+AGG | + | chr4_3:1023290-1023309 | None:intergenic | 35.0% | |
| !!! | TATAAGGTCCGCATTTTTTG+TGG | + | chr4_3:1023328-1023347 | None:intergenic | 35.0% |
| AAACTACGTACTTACAGTCT+GGG | + | chr4_3:1023406-1023425 | None:intergenic | 35.0% | |
| TGGATTTCATTTAGCGGTTT+AGG | - | chr4_3:1023425-1023444 | Msa0623710:intron | 35.0% | |
| GGATTTCATTTAGCGGTTTA+GGG | - | chr4_3:1023426-1023445 | Msa0623710:intron | 35.0% | |
| ATACAGAAATGCAGAAGCTA+AGG | + | chr4_3:1023465-1023484 | None:intergenic | 35.0% | |
| CTAAGAAATTGACTGTTGAG+AGG | + | chr4_3:1023593-1023612 | None:intergenic | 35.0% | |
| AAATGAAGGTAGACAGAAGA+AGG | + | chr4_3:1023686-1023705 | None:intergenic | 35.0% | |
| TTCTTCTGTCTACCTTCATT+TGG | - | chr4_3:1023685-1023704 | Msa0623710:intron | 35.0% | |
| CATAATCATGCACCAAATGA+AGG | + | chr4_3:1023700-1023719 | None:intergenic | 35.0% | |
| AATTTCTGCAGAAAGTTCCT+TGG | - | chr4_3:1023759-1023778 | Msa0623710:intron | 35.0% | |
| ACAGCATCAAGAATAACGAT+GGG | + | chr4_3:1023814-1023833 | None:intergenic | 35.0% | |
| CAGTAATCTCTTTCCAAACA+AGG | - | chr4_3:1023850-1023869 | Msa0623710:intron | 35.0% | |
| TGGAAAACTTTGTCCTTGTT+TGG | + | chr4_3:1023866-1023885 | None:intergenic | 35.0% | |
| ! | AAGTTTTCCATTTCTTAGGC+AGG | - | chr4_3:1023876-1023895 | Msa0623710:intron | 35.0% |
| ACAAATACCTGCCTAAGAAA+TGG | + | chr4_3:1023886-1023905 | None:intergenic | 35.0% | |
| TTCACCCTACAAACAAAGTT+TGG | - | chr4_3:1023906-1023925 | Msa0623710:intron | 35.0% | |
| TCACCCTACAAACAAAGTTT+GGG | - | chr4_3:1023907-1023926 | Msa0623710:intron | 35.0% | |
| ! | ATCCCCAAACTTTGTTTGTA+GGG | + | chr4_3:1023913-1023932 | None:intergenic | 35.0% |
| ! | AATCCCCAAACTTTGTTTGT+AGG | + | chr4_3:1023914-1023933 | None:intergenic | 35.0% |
| AAACACATGTTGAAATGGAC+CGG | + | chr4_3:1024017-1024036 | None:intergenic | 35.0% | |
| CTAATGACATCCTTAAACTC+TGG | - | chr4_3:1024139-1024158 | Msa0623710:intron | 35.0% | |
| GTAAACACCAATAACTTCTC+CGG | + | chr4_3:1024212-1024231 | None:intergenic | 35.0% | |
| ATTGAGTTTAACCGATGTGT+TGG | - | chr4_3:1024306-1024325 | Msa0623710:intron | 35.0% | |
| TCAGGTTTGTATAGTATCCA+AGG | + | chr4_3:1024388-1024407 | None:intergenic | 35.0% | |
| TCCTCCTTTCTATGATTGTA+AGG | - | chr4_3:1024471-1024490 | Msa0623710:intron | 35.0% | |
| TATGATTGTAAGGCTAAGAG+AGG | - | chr4_3:1024481-1024500 | Msa0623710:intron | 35.0% | |
| ACATTGTGAGGATATGAGTT+GGG | - | chr4_3:1024537-1024556 | Msa0623710:CDS | 35.0% | |
| TGGAGAAGATGGAAGAATGA+AGG | + | chr4_3:1021187-1021206 | None:intergenic | 40.0% | |
| !! | GTTGATGATGATGGAGAAGA+TGG | + | chr4_3:1021198-1021217 | None:intergenic | 40.0% |
| !! | GGAGTTGTAGTTGATGATGA+TGG | + | chr4_3:1021207-1021226 | None:intergenic | 40.0% |
| ! | CCTAATATGAAACACCGACT+CGG | - | chr4_3:1021353-1021372 | Msa0623710:CDS | 40.0% |
| CACAAATACTCTCTCGGATT+AGG | + | chr4_3:1021455-1021474 | None:intergenic | 40.0% | |
| ! | AGTCACTTTAGTCCCTGAAT+CGG | - | chr4_3:1021685-1021704 | Msa0623710:CDS | 40.0% |
| GACTAATTCCTTCCGATTCA+GGG | + | chr4_3:1021700-1021719 | None:intergenic | 40.0% | |
| TGACTAATTCCTTCCGATTC+AGG | + | chr4_3:1021701-1021720 | None:intergenic | 40.0% | |
| GACTAACGAAGTTTGCATTC+AGG | + | chr4_3:1021793-1021812 | None:intergenic | 40.0% | |
| ACTAACGGAGTCTACATTCA+GGG | + | chr4_3:1021824-1021843 | None:intergenic | 40.0% | |
| TCAGGGACTAAAGTGACTAA+CGG | + | chr4_3:1021929-1021948 | None:intergenic | 40.0% | |
| TCATTCAGGGACTAAAGTGA+CGG | - | chr4_3:1021894-1021913 | Msa0623710:CDS | 40.0% | |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | + | chr4_3:1021685-1021704 | None:intergenic | 40.0% |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | + | chr4_3:1021684-1021703 | None:intergenic | 40.0% |
| ! | AGCTAGCTTATAGCTGATAG+TGG | - | chr4_3:1022002-1022021 | Msa0623710:CDS | 40.0% |
| TCTTAACCCTCTCTTTGTCA+CGG | - | chr4_3:1022381-1022400 | Msa0623710:CDS | 40.0% | |
| TTCGGCCAAGAGATAGTAAA+GGG | - | chr4_3:1022414-1022433 | Msa0623710:CDS | 40.0% | |
| TCCGGATAAATCATGCCATA+TGG | - | chr4_3:1022517-1022536 | Msa0623710:CDS | 40.0% | |
| !!! | TTTTTTGGAAATGTGGGTGG+AGG | - | chr4_3:1022566-1022585 | Msa0623710:CDS | 40.0% |
| AGTCAAAGATGGTTTCAGTC+AGG | - | chr4_3:1022614-1022633 | Msa0623710:CDS | 40.0% | |
| !! | TGGTTTTCTGACATTGGCTA+AGG | - | chr4_3:1022718-1022737 | Msa0623710:intron | 40.0% |
| ACTTGAATAGGTCCCTGAAT+TGG | - | chr4_3:1022984-1023003 | Msa0623710:intron | 40.0% | |
| CTTGAATAGGTCCCTGAATT+GGG | - | chr4_3:1022985-1023004 | Msa0623710:intron | 40.0% | |
| !! | TGGGAACTCTTTAGAATCAG+AGG | + | chr4_3:1023168-1023187 | None:intergenic | 40.0% |
| AGCCGGTATCATTCAGTTAA+AGG | - | chr4_3:1023245-1023264 | Msa0623710:intron | 40.0% | |
| CTTGAAATGAGGTAAGGAGA+TGG | + | chr4_3:1023284-1023303 | None:intergenic | 40.0% | |
| GAAGCTCTCCACAAAAAATG+CGG | - | chr4_3:1023317-1023336 | Msa0623710:intron | 40.0% | |
| AACTACGTACTTACAGTCTG+GGG | + | chr4_3:1023405-1023424 | None:intergenic | 40.0% | |
| CAAACTACGTACTTACAGTC+TGG | + | chr4_3:1023407-1023426 | None:intergenic | 40.0% | |
| CAGACTGTAAGTACGTAGTT+TGG | - | chr4_3:1023405-1023424 | Msa0623710:intron | 40.0% | |
| CCAAAAGAACACGATTTGTG+AGG | + | chr4_3:1023493-1023512 | None:intergenic | 40.0% | |
| ! | CCTCACAAATCGTGTTCTTT+TGG | - | chr4_3:1023490-1023509 | Msa0623710:intron | 40.0% |
| CAGAAATCTGATCACTGTCA+TGG | - | chr4_3:1023620-1023639 | Msa0623710:intron | 40.0% | |
| !! | GTAGACAGAAGAAGGTACTT+TGG | + | chr4_3:1023678-1023697 | None:intergenic | 40.0% |
| ! | GGTGCATGATTATGATGATG+AGG | - | chr4_3:1023706-1023725 | Msa0623710:intron | 40.0% |
| GACAGCATCAAGAATAACGA+TGG | + | chr4_3:1023815-1023834 | None:intergenic | 40.0% | |
| ! | CTTGATGCTGTCTTTTGATC+AGG | - | chr4_3:1023823-1023842 | Msa0623710:intron | 40.0% |
| CACCCTACAAACAAAGTTTG+GGG | - | chr4_3:1023908-1023927 | Msa0623710:intron | 40.0% | |
| AACACATGTTGAAATGGACC+GGG | + | chr4_3:1024016-1024035 | None:intergenic | 40.0% | |
| TCATGCTTCTTGTCAACATC+AGG | + | chr4_3:1024079-1024098 | None:intergenic | 40.0% | |
| !! | CAGTTTGTTGATATCCCTCA+TGG | + | chr4_3:1024243-1024262 | None:intergenic | 40.0% |
| ACTAGCTCATGGTCTACTTT+CGG | - | chr4_3:1024331-1024350 | Msa0623710:intron | 40.0% | |
| ! | AAAGGAGGAGCATGAAAACA+CGG | + | chr4_3:1024460-1024479 | None:intergenic | 40.0% |
| GCCTTACAATCATAGAAAGG+AGG | + | chr4_3:1024475-1024494 | None:intergenic | 40.0% | |
| TCCTCATGTAAGACATTGTG+AGG | - | chr4_3:1024525-1024544 | Msa0623710:CDS | 40.0% | |
| TCCTCACAATGTCTTACATG+AGG | + | chr4_3:1024529-1024548 | None:intergenic | 40.0% | |
| GACATTGTGAGGATATGAGT+TGG | - | chr4_3:1024536-1024555 | Msa0623710:CDS | 40.0% | |
| CATTGTGAGGATATGAGTTG+GGG | - | chr4_3:1024538-1024557 | Msa0623710:CDS | 40.0% | |
| AAGCGAGTGGAAGTGAAAAC+AGG | + | chr4_3:1021120-1021139 | None:intergenic | 45.0% | |
| ! | CCGAGTCGGTGTTTCATATT+AGG | + | chr4_3:1021356-1021375 | None:intergenic | 45.0% |
| ACTTTAGTCCCTGAATCGGA+AGG | - | chr4_3:1021689-1021708 | Msa0623710:CDS | 45.0% | |
| GACTAACGGAGTCTACATTC+AGG | + | chr4_3:1021825-1021844 | None:intergenic | 45.0% | |
| TCCCTGAAATTGACCATGCA+GGG | - | chr4_3:1021852-1021871 | Msa0623710:CDS | 45.0% | |
| TCCCTGCATGGTCAATTTCA+GGG | + | chr4_3:1021856-1021875 | None:intergenic | 45.0% | |
| ATTGCAAAACAGTCCCTGCA+TGG | + | chr4_3:1021868-1021887 | None:intergenic | 45.0% | |
| TCACTACCGTGACAAAGAGA+GGG | + | chr4_3:1022390-1022409 | None:intergenic | 45.0% | |
| TTCACTACCGTGACAAAGAG+AGG | + | chr4_3:1022391-1022410 | None:intergenic | 45.0% | |
| TGTCACGGTAGTGAACAGTT+CGG | - | chr4_3:1022396-1022415 | Msa0623710:CDS | 45.0% | |
| GTTCGGCCAAGAGATAGTAA+AGG | - | chr4_3:1022413-1022432 | Msa0623710:CDS | 45.0% | |
| GTTTCAGTCAGGATCGAACT+CGG | - | chr4_3:1022625-1022644 | Msa0623710:intron | 45.0% | |
| ! | AGGATCGAACTCGGTTTTTC+CGG | - | chr4_3:1022634-1022653 | Msa0623710:intron | 45.0% |
| ATGATAGATCCTGTCTCAGC+CGG | - | chr4_3:1023228-1023247 | Msa0623710:intron | 45.0% | |
| AGTCTGGGGACTCACTTAAA+TGG | + | chr4_3:1023391-1023410 | None:intergenic | 45.0% | |
| CATTTAGCGGTTTAGGGAAC+AGG | - | chr4_3:1023432-1023451 | Msa0623710:intron | 45.0% | |
| ! | AACCAGGAGACATCTGGAAT+CGG | + | chr4_3:1023554-1023573 | None:intergenic | 45.0% |
| TGTTGAGAGGGAAATCAGGA+GGG | + | chr4_3:1023580-1023599 | None:intergenic | 45.0% | |
| TGACTGTTGAGAGGGAAATC+AGG | + | chr4_3:1023584-1023603 | None:intergenic | 45.0% | |
| ! | GCCAACGTTGATGAAAGAGT+CGG | - | chr4_3:1023962-1023981 | Msa0623710:intron | 45.0% |
| AAAGAGTCGGCATCCAGATT+AGG | - | chr4_3:1023975-1023994 | Msa0623710:intron | 45.0% | |
| AAGAGTCGGCATCCAGATTA+GGG | - | chr4_3:1023976-1023995 | Msa0623710:intron | 45.0% | |
| TCGTGTCGAAAACCCTAATC+TGG | + | chr4_3:1023991-1024010 | None:intergenic | 45.0% | |
| TGGGAATATCCAACTGTGAC+CGG | - | chr4_3:1024190-1024209 | Msa0623710:intron | 45.0% | |
| ATAACTTCTCCGGTCACAGT+TGG | + | chr4_3:1024202-1024221 | None:intergenic | 45.0% | |
| ACTGTGACCGGAGAAGTTAT+TGG | - | chr4_3:1024202-1024221 | Msa0623710:intron | 45.0% | |
| TGTTTACCAACCAAGCCATG+AGG | - | chr4_3:1024225-1024244 | Msa0623710:intron | 45.0% | |
| GTTTACCAACCAAGCCATGA+GGG | - | chr4_3:1024226-1024245 | Msa0623710:intron | 45.0% | |
| TGTTGATATCCCTCATGGCT+TGG | + | chr4_3:1024238-1024257 | None:intergenic | 45.0% | |
| TGAGCTAGTCACCAACACAT+CGG | + | chr4_3:1024320-1024339 | None:intergenic | 45.0% | |
| !! | ATGTGTTGGTGACTAGCTCA+TGG | - | chr4_3:1024320-1024339 | Msa0623710:intron | 45.0% |
| ATTGACATTGCACGTCGACA+AGG | + | chr4_3:1024433-1024452 | None:intergenic | 45.0% | |
| TTGTCGACGTGCAATGTCAA+TGG | - | chr4_3:1024432-1024451 | Msa0623710:intron | 45.0% | |
| ! | GGATATGAGTTGGGGTCTTA+AGG | - | chr4_3:1024546-1024565 | Msa0623710:CDS | 45.0% |
| GAGAGAAGCGAATAAGCGAG+TGG | + | chr4_3:1021133-1021152 | None:intergenic | 50.0% | |
| ATCAGTGTCTGTGTCCGAGT+CGG | + | chr4_3:1021370-1021389 | None:intergenic | 50.0% | |
| GTCCCTGAAATTGACCATGC+AGG | - | chr4_3:1021851-1021870 | Msa0623710:CDS | 50.0% | |
| GTCCCTGCATGGTCAATTTC+AGG | + | chr4_3:1021857-1021876 | None:intergenic | 50.0% | |
| CTTTAGTCCCTGAATGGGAG+AGG | + | chr4_3:1021922-1021941 | None:intergenic | 50.0% | |
| !! | CTTGGTGGACTTCTAGCATC+TGG | - | chr4_3:1023200-1023219 | Msa0623710:intron | 50.0% |
| ! | TGAATGATACCGGCTGAGAC+AGG | + | chr4_3:1023240-1023259 | None:intergenic | 50.0% |
| !! | CGTGTTCTTTTGGTTGACCC+TGG | - | chr4_3:1023500-1023519 | Msa0623710:intron | 50.0% |
| !! | GATCGACCATATCGACTCCA+GGG | + | chr4_3:1023520-1023539 | None:intergenic | 50.0% |
| !! | AGATCGACCATATCGACTCC+AGG | + | chr4_3:1023521-1023540 | None:intergenic | 50.0% |
| ! | AACCGATTCCAGATGTCTCC+TGG | - | chr4_3:1023549-1023568 | Msa0623710:intron | 50.0% |
| GAAATCAGGAGGGAGAAACC+AGG | + | chr4_3:1023570-1023589 | None:intergenic | 50.0% | |
| CTGTTGAGAGGGAAATCAGG+AGG | + | chr4_3:1023581-1023600 | None:intergenic | 50.0% | |
| ! | GCCGACTCTTTCATCAACGT+TGG | + | chr4_3:1023966-1023985 | None:intergenic | 50.0% |
| !! | GATATCCCTCATGGCTTGGT+TGG | + | chr4_3:1024234-1024253 | None:intergenic | 50.0% |
| TCAGGAGCAGTTTCGTTCTC+AGG | + | chr4_3:1024406-1024425 | None:intergenic | 50.0% | |
| ! | TGACGGATCCTCTCCCATTC+AGG | - | chr4_3:1021911-1021930 | Msa0623710:CDS | 55.0% |
| GACGGATCCTCTCCCATTCA+GGG | - | chr4_3:1021912-1021931 | Msa0623710:CDS | 55.0% | |
| GGTTGACCCTGGAGTCGATA+TGG | - | chr4_3:1023511-1023530 | Msa0623710:intron | 55.0% | |
| GGGAGAAACCAGGAGACATC+TGG | + | chr4_3:1023560-1023579 | None:intergenic | 55.0% | |
| ! | AGGGTTTTCGACACGAGACC+CGG | - | chr4_3:1023995-1024014 | Msa0623710:intron | 55.0% |
| TACTTTCGGCTACGTCGCAC+AGG | - | chr4_3:1024345-1024364 | Msa0623710:intron | 55.0% | |
| ACTTTCGGCTACGTCGCACA+GGG | - | chr4_3:1024346-1024365 | Msa0623710:intron | 55.0% | |
| ! | GGCTCGGAGGTTTGAAACCT+TGG | - | chr4_3:1024368-1024387 | Msa0623710:intron | 55.0% |
| GACATTGCACGTCGACAAGG+AGG | + | chr4_3:1024430-1024449 | None:intergenic | 55.0% | |
| !! | GCTAAGAGAGGCACTGACAC+AGG | - | chr4_3:1024493-1024512 | Msa0623710:intron | 55.0% |
| CTTTCGGCTACGTCGCACAG+GGG | - | chr4_3:1024347-1024366 | Msa0623710:intron | 60.0% | |
| GCACGTCGACAAGGAGGATC+AGG | + | chr4_3:1024424-1024443 | None:intergenic | 60.0% | |
| GGCTACGTCGCACAGGGGCT+CGG | - | chr4_3:1024352-1024371 | Msa0623710:intron | 70.0% | |
| TACGTCGCACAGGGGCTCGG+AGG | - | chr4_3:1024355-1024374 | Msa0623710:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 1021088 | 1024699 | 1021088 | ID=Msa0623710;Name=Msa0623710 |
| chr4_3 | mRNA | 1021088 | 1024699 | 1021088 | ID=Msa0623710-mRNA-1;Parent=Msa0623710;Name=Msa0623710-mRNA-1;_AED=0.01;_eAED=0.01;_QI=5|1|1|1|1|1|2|102|540 |
| chr4_3 | exon | 1021088 | 1022637 | 1021088 | ID=Msa0623710-mRNA-1:exon:356;Parent=Msa0623710-mRNA-1 |
| chr4_3 | exon | 1024520 | 1024699 | 1024520 | ID=Msa0623710-mRNA-1:exon:355;Parent=Msa0623710-mRNA-1 |
| chr4_3 | five_prime_UTR | 1024695 | 1024699 | 1024695 | ID=Msa0623710-mRNA-1:five_prime_utr;Parent=Msa0623710-mRNA-1 |
| chr4_3 | CDS | 1024520 | 1024694 | 1024520 | ID=Msa0623710-mRNA-1:cds;Parent=Msa0623710-mRNA-1 |
| chr4_3 | CDS | 1021190 | 1022637 | 1021190 | ID=Msa0623710-mRNA-1:cds;Parent=Msa0623710-mRNA-1 |
| chr4_3 | three_prime_UTR | 1021088 | 1021189 | 1021088 | ID=Msa0623710-mRNA-1:three_prime_utr;Parent=Msa0623710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
