Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397820 | XP_013459426.1 | 97.222 | 540 | 15 | 0 | 1 | 540 | 1 | 540 | 0.0 | 1091 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397820 | sp|Q9M5Q1|FUT1_PEA | 77.247 | 523 | 112 | 2 | 16 | 535 | 47 | 565 | 0.0 | 844 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397820 | A0A072UV20 | 97.222 | 540 | 15 | 0 | 1 | 540 | 1 | 540 | 0.0 | 1091 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032920 | Msa1397820 | -0.800698 | 1.275400e-48 | -8.615850e-47 |
| Msa1348090 | Msa1397820 | 0.804218 | 2.400222e-49 | -8.615850e-47 |
| Msa1397820 | Msa1440960 | 0.805557 | 1.260269e-49 | -8.615850e-47 |
| Msa0623710 | Msa1397820 | 0.996295 | 9.823281e-226 | -8.615850e-47 |
| Msa0626450 | Msa1397820 | 0.814078 | 1.850235e-51 | -8.615850e-47 |
| Msa0626490 | Msa1397820 | 0.810140 | 1.336354e-50 | -8.615850e-47 |
| Msa0664600 | Msa1397820 | 0.811517 | 6.728023e-51 | -8.615850e-47 |
| Msa0737570 | Msa1397820 | 0.805156 | 1.529404e-49 | -8.615850e-47 |
| Msa0815960 | Msa1397820 | 0.808558 | 2.919319e-50 | -8.615850e-47 |
| Msa1276660 | Msa1397820 | 0.801224 | 9.960060e-49 | -8.615850e-47 |
| Msa0402320 | Msa1397820 | 0.957844 | 1.014102e-115 | -8.615850e-47 |
| Msa0337700 | Msa1397820 | 0.806045 | 9.951547e-50 | -8.615850e-47 |
| Msa0355260 | Msa1397820 | 0.964458 | 2.364704e-123 | -8.615850e-47 |
| Msa0856920 | Msa1397820 | 0.801520 | 8.662576e-49 | -8.615850e-47 |
| Msa0861510 | Msa1397820 | 0.808876 | 2.497045e-50 | -8.615850e-47 |
| Msa0861600 | Msa1397820 | 0.816211 | 6.214314e-52 | -8.615850e-47 |
| Msa0866520 | Msa1397820 | 0.802718 | 4.910871e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397820 | MtrunA17_Chr3g0091781 | 97.222 | 540 | 15 | 0 | 1 | 540 | 1 | 540 | 0.0 | 1091 |
| Msa1397820 | MtrunA17_Chr4g0060941 | 76.852 | 540 | 117 | 4 | 3 | 535 | 38 | 576 | 0.0 | 855 |
| Msa1397820 | MtrunA17_Chr8g0388711 | 50.638 | 470 | 221 | 4 | 73 | 536 | 120 | 584 | 8.31e-165 | 480 |
| Msa1397820 | MtrunA17_Chr1g0196981 | 50.106 | 471 | 221 | 4 | 73 | 535 | 22 | 486 | 1.06e-164 | 476 |
| Msa1397820 | MtrunA17_Chr2g0286741 | 44.515 | 474 | 243 | 8 | 72 | 534 | 111 | 575 | 1.70e-134 | 402 |
| Msa1397820 | MtrunA17_Chr4g0001511 | 43.949 | 471 | 247 | 7 | 72 | 535 | 249 | 709 | 2.83e-130 | 396 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397820 | AT2G03220.1 | 62.642 | 530 | 175 | 4 | 14 | 533 | 42 | 558 | 0.0 | 681 |
| Msa1397820 | AT2G03210.2 | 58.252 | 515 | 193 | 7 | 31 | 535 | 70 | 572 | 0.0 | 620 |
| Msa1397820 | AT2G03210.1 | 58.252 | 515 | 193 | 7 | 31 | 535 | 36 | 538 | 0.0 | 620 |
| Msa1397820 | AT2G03210.3 | 60.163 | 492 | 179 | 6 | 60 | 535 | 79 | 569 | 0.0 | 619 |
| Msa1397820 | AT1G14100.1 | 55.268 | 503 | 205 | 7 | 48 | 536 | 20 | 516 | 0.0 | 551 |
| Msa1397820 | AT1G14080.1 | 53.144 | 493 | 217 | 5 | 55 | 535 | 46 | 536 | 0.0 | 538 |
| Msa1397820 | AT2G15350.1 | 52.130 | 493 | 222 | 9 | 55 | 535 | 23 | 513 | 2.42e-177 | 510 |
| Msa1397820 | AT2G15390.1 | 51.760 | 483 | 221 | 6 | 64 | 535 | 21 | 502 | 4.34e-177 | 509 |
| Msa1397820 | AT2G15390.2 | 51.767 | 481 | 220 | 6 | 65 | 534 | 54 | 533 | 9.92e-177 | 509 |
| Msa1397820 | AT2G15370.1 | 50.840 | 476 | 225 | 6 | 69 | 535 | 57 | 532 | 7.77e-169 | 489 |
| Msa1397820 | AT1G14110.1 | 51.452 | 482 | 182 | 6 | 60 | 534 | 33 | 469 | 9.36e-168 | 484 |
| Msa1397820 | AT1G74420.2 | 49.000 | 500 | 229 | 10 | 16 | 506 | 42 | 524 | 3.96e-161 | 469 |
| Msa1397820 | AT1G74420.3 | 49.000 | 500 | 229 | 10 | 16 | 506 | 80 | 562 | 3.43e-160 | 468 |
| Msa1397820 | AT1G74420.1 | 49.004 | 502 | 222 | 11 | 16 | 506 | 42 | 520 | 4.13e-160 | 466 |
| Msa1397820 | AT1G74420.4 | 49.004 | 502 | 222 | 11 | 16 | 506 | 80 | 558 | 3.21e-159 | 465 |
Find 120 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGAAATAACCAGAGTTTA+AGG | 0.121631 | tig0022193:+33602 | None:intergenic |
| TGGATTTCATTTAGCGGTTT+AGG | 0.197340 | tig0022193:-34326 | Msa1397820:CDS |
| CCTCACAAATCGTGTTCTTT+TGG | 0.256519 | tig0022193:-34261 | Msa1397820:CDS |
| CCACCAAGTAGTTTATCTTT+TGG | 0.261850 | tig0022193:+34566 | None:intergenic |
| TGGAAAACTTTGTCCTTGTT+TGG | 0.264766 | tig0022193:+33888 | None:intergenic |
| AGCCGGTATCATTCAGTTAA+AGG | 0.272487 | tig0022193:-34506 | Msa1397820:CDS |
| TTATTGTAGGATTCGGTATA+AGG | 0.276356 | tig0022193:+34410 | None:intergenic |
| TTCACCCTACAAACAAAGTT+TGG | 0.276712 | tig0022193:-33845 | Msa1397820:CDS |
| CATTCAGTTAAAGGACTATC+AGG | 0.303102 | tig0022193:-34497 | Msa1397820:CDS |
| GGATTTCATTTAGCGGTTTA+GGG | 0.303332 | tig0022193:-34325 | Msa1397820:CDS |
| AATATAGCATGCACTCAATA+TGG | 0.323248 | tig0022193:+33061 | None:intergenic |
| AATCTTAGCTTGTACTTTGA+AGG | 0.325331 | tig0022193:-33709 | Msa1397820:CDS |
| GGATATGAGTTGGGGTCTTA+AGG | 0.326106 | tig0022193:-33205 | Msa1397820:CDS |
| ACAGTAAAAGATCTCAATTC+TGG | 0.327111 | tig0022193:-34386 | Msa1397820:CDS |
| AGATGAAGAAGACTAGTTGT+AGG | 0.331724 | tig0022193:+36524 | None:intergenic |
| AGTCTGGGGACTCACTTAAA+TGG | 0.332705 | tig0022193:+34363 | None:intergenic |
| GACAAGAAGCATGATAATAT+TGG | 0.332745 | tig0022193:-33666 | Msa1397820:CDS |
| TTCTTCTGTCTACCTTCATT+TGG | 0.339147 | tig0022193:-34066 | Msa1397820:CDS |
| CATTTAGCGGTTTAGGGAAC+AGG | 0.347183 | tig0022193:-34319 | Msa1397820:CDS |
| TGAAAACAGGAACATTTCTA+TGG | 0.353966 | tig0022193:+36645 | None:intergenic |
| TCACCCTACAAACAAAGTTT+GGG | 0.356509 | tig0022193:-33844 | Msa1397820:CDS |
| AATCCCCAAACTTTGTTTGT+AGG | 0.359650 | tig0022193:+33840 | None:intergenic |
| TGATCAAACACATGTTGAAA+TGG | 0.363067 | tig0022193:+33732 | None:intergenic |
| GGTTGACCCTGGAGTCGATA+TGG | 0.378603 | tig0022193:-34240 | Msa1397820:CDS |
| AAGAGTCGGCATCCAGATTA+GGG | 0.381150 | tig0022193:-33775 | Msa1397820:CDS |
| AAAGAGTCGGCATCCAGATT+AGG | 0.381207 | tig0022193:-33776 | Msa1397820:CDS |
| TCAGGAGCAGTTTCGTTCTC+AGG | 0.396736 | tig0022193:+33348 | None:intergenic |
| CAAACTACGTACTTACAGTC+TGG | 0.400090 | tig0022193:+34347 | None:intergenic |
| TCCTCCTTTCTATGATTGTA+AGG | 0.401474 | tig0022193:-33280 | Msa1397820:CDS |
| CAGACTGTAAGTACGTAGTT+TGG | 0.407993 | tig0022193:-34346 | Msa1397820:CDS |
| ACAAATACCTGCCTAAGAAA+TGG | 0.409190 | tig0022193:+33868 | None:intergenic |
| TCGTGTCGAAAACCCTAATC+TGG | 0.411005 | tig0022193:+33763 | None:intergenic |
| GGGAGAAACCAGGAGACATC+TGG | 0.412994 | tig0022193:+34194 | None:intergenic |
| GGCTACGTCGCACAGGGGCT+CGG | 0.431212 | tig0022193:-33399 | Msa1397820:CDS |
| TGACTGTTGAGAGGGAAATC+AGG | 0.431783 | tig0022193:+34170 | None:intergenic |
| CTTGGTGGACTTCTAGCATC+TGG | 0.432274 | tig0022193:-34551 | Msa1397820:CDS |
| GGCTCGGAGGTTTGAAACCT+TGG | 0.432875 | tig0022193:-33383 | Msa1397820:CDS |
| TCATGCTTCTTGTCAACATC+AGG | 0.434329 | tig0022193:+33675 | None:intergenic |
| ACTAGCTCATGGTCTACTTT+CGG | 0.435497 | tig0022193:-33420 | Msa1397820:CDS |
| ATCCCCAAACTTTGTTTGTA+GGG | 0.440499 | tig0022193:+33841 | None:intergenic |
| CAGTTTGTTGATATCCCTCA+TGG | 0.442703 | tig0022193:+33511 | None:intergenic |
| ATGCACTCAATATGGAGTTA+TGG | 0.449948 | tig0022193:+33069 | None:intergenic |
| ACATTGTGAGGATATGAGTT+GGG | 0.455716 | tig0022193:-33214 | Msa1397820:CDS |
| TACTTTCGGCTACGTCGCAC+AGG | 0.456550 | tig0022193:-33406 | Msa1397820:CDS |
| AAAAGTAAGAGACATGTATT+GGG | 0.462487 | tig0022193:-33580 | Msa1397820:CDS |
| GCACGTCGACAAGGAGGATC+AGG | 0.467846 | tig0022193:+33330 | None:intergenic |
| AAGCGAGTGGAAGTGAAAAC+AGG | 0.468053 | tig0022193:+36632 | None:intergenic |
| AATTTCTGCAGAAAGTTCCT+TGG | 0.468138 | tig0022193:-33992 | Msa1397820:CDS |
| TAGTTATTGAAGTTATGAAT+TGG | 0.473063 | tig0022193:-33163 | Msa1397820:exon |
| TTGTCGACGTGCAATGTCAA+TGG | 0.481831 | tig0022193:-33319 | Msa1397820:CDS |
| AACCGATTCCAGATGTCTCC+TGG | 0.488031 | tig0022193:-34202 | Msa1397820:CDS |
| AAACACATGTTGAAATGGAC+CGG | 0.499080 | tig0022193:+33737 | None:intergenic |
| GAAATCAGGAGGGAGAAACC+AGG | 0.499580 | tig0022193:+34184 | None:intergenic |
| GTAGACAGAAGAAGGTACTT+TGG | 0.501837 | tig0022193:+34076 | None:intergenic |
| TGTTGATATCCCTCATGGCT+TGG | 0.503548 | tig0022193:+33516 | None:intergenic |
| GTTGATGATGATGGAGAAGA+TGG | 0.505194 | tig0022193:+36554 | None:intergenic |
| TGGAGAAGATGGAAGAATGA+AGG | 0.510549 | tig0022193:+36565 | None:intergenic |
| GTCCTTTAACTGAATGATAC+CGG | 0.510788 | tig0022193:+34504 | None:intergenic |
| TCAGGTTTGTATAGTATCCA+AGG | 0.511855 | tig0022193:+33366 | None:intergenic |
| GACATTGTGAGGATATGAGT+TGG | 0.512210 | tig0022193:-33215 | Msa1397820:CDS |
| TGGGAATATCCAACTGTGAC+CGG | 0.515749 | tig0022193:-33561 | Msa1397820:CDS |
| CGTAATCTTGAAATGAGGTA+AGG | 0.517518 | tig0022193:+34464 | None:intergenic |
| TGAATGATACCGGCTGAGAC+AGG | 0.522502 | tig0022193:+34514 | None:intergenic |
| ACTGTGACCGGAGAAGTTAT+TGG | 0.523131 | tig0022193:-33549 | Msa1397820:CDS |
| GGAGTTGTAGTTGATGATGA+TGG | 0.523701 | tig0022193:+36545 | None:intergenic |
| GTAAACACCAATAACTTCTC+CGG | 0.525651 | tig0022193:+33542 | None:intergenic |
| CTAATGACATCCTTAAACTC+TGG | 0.526399 | tig0022193:-33612 | Msa1397820:CDS |
| CATAATCATGCACCAAATGA+AGG | 0.526474 | tig0022193:+34054 | None:intergenic |
| TGGGAACTCTTTAGAATCAG+AGG | 0.528580 | tig0022193:+34586 | None:intergenic |
| AGATCGACCATATCGACTCC+AGG | 0.528983 | tig0022193:+34233 | None:intergenic |
| TTCCCAAAAGATAAACTACT+TGG | 0.532835 | tig0022193:-34569 | Msa1397820:CDS |
| AACCAGGAGACATCTGGAAT+CGG | 0.534399 | tig0022193:+34200 | None:intergenic |
| AAACTACGTACTTACAGTCT+GGG | 0.536165 | tig0022193:+34348 | None:intergenic |
| AAATGAAGGTAGACAGAAGA+AGG | 0.539324 | tig0022193:+34068 | None:intergenic |
| CAGAAATCTGATCACTGTCA+TGG | 0.540196 | tig0022193:-34131 | Msa1397820:CDS |
| CCAAAAGATAAACTACTTGG+TGG | 0.541266 | tig0022193:-34566 | Msa1397820:CDS |
| TTAGCCTTACAATCATAGAA+AGG | 0.543257 | tig0022193:+33276 | None:intergenic |
| GTAGTTTGGATTTCATTTAG+CGG | 0.558001 | tig0022193:-34332 | Msa1397820:CDS |
| ATGATAGATCCTGTCTCAGC+CGG | 0.563399 | tig0022193:-34523 | Msa1397820:CDS |
| GATATCCCTCATGGCTTGGT+TGG | 0.563961 | tig0022193:+33520 | None:intergenic |
| CTTGAAATGAGGTAAGGAGA+TGG | 0.564341 | tig0022193:+34470 | None:intergenic |
| CAGTAATCTCTTTCCAAACA+AGG | 0.565980 | tig0022193:-33901 | Msa1397820:CDS |
| ATAACTTCTCCGGTCACAGT+TGG | 0.569629 | tig0022193:+33552 | None:intergenic |
| ATACAGAAATGCAGAAGCTA+AGG | 0.572547 | tig0022193:+34289 | None:intergenic |
| TCCTCATGTAAGACATTGTG+AGG | 0.572556 | tig0022193:-33226 | Msa1397820:CDS |
| TAAGAAATTGACTGTTGAGA+GGG | 0.572937 | tig0022193:+34162 | None:intergenic |
| GACAGCATCAAGAATAACGA+TGG | 0.573964 | tig0022193:+33939 | None:intergenic |
| ATTGAGTTTAACCGATGTGT+TGG | 0.587338 | tig0022193:-33445 | Msa1397820:CDS |
| CTAAGAAATTGACTGTTGAG+AGG | 0.591251 | tig0022193:+34161 | None:intergenic |
| ATCTTCGTAATCTTGAAATG+AGG | 0.597371 | tig0022193:+34459 | None:intergenic |
| GCCGACTCTTTCATCAACGT+TGG | 0.598421 | tig0022193:+33788 | None:intergenic |
| CTCAAACAAAATCAACAACT+AGG | 0.602192 | tig0022193:-36503 | Msa1397820:intron |
| ACTTTCGGCTACGTCGCACA+GGG | 0.602869 | tig0022193:-33405 | Msa1397820:CDS |
| ATTCAGTTAAAGGACTATCA+GGG | 0.603770 | tig0022193:-34496 | Msa1397820:CDS |
| GCTAAGAGAGGCACTGACAC+AGG | 0.606195 | tig0022193:-33258 | Msa1397820:CDS |
| CACCCTACAAACAAAGTTTG+GGG | 0.613565 | tig0022193:-33843 | Msa1397820:CDS |
| TATGATTGTAAGGCTAAGAG+AGG | 0.617643 | tig0022193:-33270 | Msa1397820:CDS |
| TCCTAAAGCAAAATAACTAG+TGG | 0.619595 | tig0022193:+33137 | None:intergenic |
| ATTGACATTGCACGTCGACA+AGG | 0.621481 | tig0022193:+33321 | None:intergenic |
| GCCAACGTTGATGAAAGAGT+CGG | 0.622353 | tig0022193:-33789 | Msa1397820:CDS |
| GTTTACCAACCAAGCCATGA+GGG | 0.622486 | tig0022193:-33525 | Msa1397820:CDS |
| ACAGCATCAAGAATAACGAT+GGG | 0.630626 | tig0022193:+33940 | None:intergenic |
| CTGTTGAGAGGGAAATCAGG+AGG | 0.631751 | tig0022193:+34173 | None:intergenic |
| AACACATGTTGAAATGGACC+GGG | 0.633166 | tig0022193:+33738 | None:intergenic |
| CATTGTGAGGATATGAGTTG+GGG | 0.637118 | tig0022193:-33213 | Msa1397820:CDS |
| ATGTGTTGGTGACTAGCTCA+TGG | 0.637268 | tig0022193:-33431 | Msa1397820:CDS |
| GGTGCATGATTATGATGATG+AGG | 0.640848 | tig0022193:-34045 | Msa1397820:CDS |
| GCCTTACAATCATAGAAAGG+AGG | 0.644238 | tig0022193:+33279 | None:intergenic |
| GATCGACCATATCGACTCCA+GGG | 0.646501 | tig0022193:+34234 | None:intergenic |
| TCCTCACAATGTCTTACATG+AGG | 0.647592 | tig0022193:+33225 | None:intergenic |
| CCAAAAGAACACGATTTGTG+AGG | 0.650604 | tig0022193:+34261 | None:intergenic |
| AACTACGTACTTACAGTCTG+GGG | 0.654367 | tig0022193:+34349 | None:intergenic |
| TGTTGAGAGGGAAATCAGGA+GGG | 0.662386 | tig0022193:+34174 | None:intergenic |
| TACGTCGCACAGGGGCTCGG+AGG | 0.665321 | tig0022193:-33396 | Msa1397820:CDS |
| TGTTTACCAACCAAGCCATG+AGG | 0.669655 | tig0022193:-33526 | Msa1397820:CDS |
| GAGAGAAGCGAATAAGCGAG+TGG | 0.671149 | tig0022193:+36619 | None:intergenic |
| AAAGGAGGAGCATGAAAACA+CGG | 0.681859 | tig0022193:+33294 | None:intergenic |
| GACATTGCACGTCGACAAGG+AGG | 0.696138 | tig0022193:+33324 | None:intergenic |
| TGAGCTAGTCACCAACACAT+CGG | 0.705484 | tig0022193:+33434 | None:intergenic |
| CTTTCGGCTACGTCGCACAG+GGG | 0.764738 | tig0022193:-33404 | Msa1397820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAATGCACTTTTTAATT+TGG | - | tig0022193:33289-33308 | Msa1397820:CDS | 15.0% |
| !!! | TAATATTTTTAAGTTCTGTT+TGG | - | tig0022193:33630-33649 | Msa1397820:CDS | 15.0% |
| !!! | TTTTTTTCAATTAAAATTGC+AGG | - | tig0022193:34112-34131 | Msa1397820:CDS | 15.0% |
| !!! | TTTTTTCAATTAAAATTGCA+GGG | - | tig0022193:34113-34132 | Msa1397820:CDS | 15.0% |
| !!! | AACTATTTGATTGTTTTTTA+TGG | - | tig0022193:34682-34701 | Msa1397820:intron | 15.0% |
| !! | TTCTATTTGATAAATAGTTA+AGG | - | tig0022193:34814-34833 | Msa1397820:intron | 15.0% |
| !! | ATAACAAAGTTCTTAAAAAA+TGG | - | tig0022193:34898-34917 | Msa1397820:intron | 15.0% |
| !! | TTTCATATTATTTGGTTATT+AGG | - | tig0022193:35112-35131 | Msa1397820:intron | 15.0% |
| !! | ATGTAACGTTTAATTCAATT+TGG | - | tig0022193:33576-33595 | Msa1397820:CDS | 20.0% |
| !! | ATATGATCTAATAACGTAAA+AGG | + | tig0022193:33608-33627 | None:intergenic | 20.0% |
| !!! | ATAATCCGCTATATATTTTA+CGG | + | tig0022193:33941-33960 | None:intergenic | 20.0% |
| !!! | TTTTTCAATTAAAATTGCAG+GGG | - | tig0022193:34114-34133 | Msa1397820:CDS | 20.0% |
| !! | AGTTACTTGAATTAACTTAT+CGG | - | tig0022193:34181-34200 | Msa1397820:CDS | 20.0% |
| !!! | TATAACTAAAAAGACTTGTT+TGG | + | tig0022193:34262-34281 | None:intergenic | 20.0% |
| !! | AGATCCTTAATGTATTATAA+GGG | - | tig0022193:34324-34343 | Msa1397820:CDS | 20.0% |
| !!! | GCATATATAAAGTGATTTTT+GGG | + | tig0022193:34437-34456 | None:intergenic | 20.0% |
| !!! | TGCATATATAAAGTGATTTT+TGG | + | tig0022193:34438-34457 | None:intergenic | 20.0% |
| !! | CAAAAAATTAAACTTGGATT+TGG | + | tig0022193:34537-34556 | None:intergenic | 20.0% |
| !!! | CAAATCCAAGTTTAATTTTT+TGG | - | tig0022193:34535-34554 | Msa1397820:CDS | 20.0% |
| !! | CATTTCCAAAAAATTAAACT+TGG | + | tig0022193:34543-34562 | None:intergenic | 20.0% |
| !!! | AGTTTAATTTTTTGGAAATG+TGG | - | tig0022193:34543-34562 | Msa1397820:CDS | 20.0% |
| !!! | GTTTAATTTTTTGGAAATGT+GGG | - | tig0022193:34544-34563 | Msa1397820:CDS | 20.0% |
| !! | CATAGAAAAAAGAAATATCA+AGG | + | tig0022193:34784-34803 | None:intergenic | 20.0% |
| !!! | CTTGATATTTCTTTTTTCTA+TGG | - | tig0022193:34782-34801 | Msa1397820:intron | 20.0% |
| !!! | ATTTTCAAAATCAAGATTCA+AGG | + | tig0022193:34866-34885 | None:intergenic | 20.0% |
| !! | AACCAATAAATGCATAAAAT+AGG | + | tig0022193:35039-35058 | None:intergenic | 20.0% |
| !! | TGATAGAGTTTCATATTATT+TGG | - | tig0022193:35104-35123 | Msa1397820:intron | 20.0% |
| !!! | ATCTTTTACTGTTTTATTGT+AGG | + | tig0022193:35341-35360 | None:intergenic | 20.0% |
| !! | TAGTTATTGAAGTTATGAAT+TGG | - | tig0022193:36572-36591 | Msa1397820:CDS | 20.0% |
| ! | AGTGCATTATATTAATGAAG+AGG | + | tig0022193:33281-33300 | None:intergenic | 25.0% |
| ! | TTACAATTTATCTGCATTCA+GGG | + | tig0022193:33716-33735 | None:intergenic | 25.0% |
| ! | TTTACAATTTATCTGCATTC+AGG | + | tig0022193:33717-33736 | None:intergenic | 25.0% |
| !! | TAATCCGCTATATATTTTAC+GGG | + | tig0022193:33940-33959 | None:intergenic | 25.0% |
| ! | GTAGTGTTTGATTAAATTAG+CGG | - | tig0022193:34031-34050 | Msa1397820:CDS | 25.0% |
| ! | TAATACATTAAGGATCTGTT+TGG | + | tig0022193:34321-34340 | None:intergenic | 25.0% |
| ! | CAGATCCTTAATGTATTATA+AGG | - | tig0022193:34323-34342 | Msa1397820:CDS | 25.0% |
| ! | CAAACCCTTATAATACATTA+AGG | + | tig0022193:34331-34350 | None:intergenic | 25.0% |
| !!! | TATATAAAGTGATTTTTGGG+TGG | + | tig0022193:34434-34453 | None:intergenic | 25.0% |
| ! | ACTTTATATATGCACACATT+TGG | - | tig0022193:34444-34463 | Msa1397820:CDS | 25.0% |
| !! | AGTGTTTGAAATTACAATTC+CGG | - | tig0022193:34483-34502 | Msa1397820:CDS | 25.0% |
| ! | TTAGTTAAGATTGAATCAAC+CGG | + | tig0022193:34640-34659 | None:intergenic | 25.0% |
| !! | TTTTTATGGTTTTCTGACAT+TGG | - | tig0022193:34696-34715 | Msa1397820:intron | 25.0% |
| ! | TTAAAAAATGGACAATAGAG+AGG | - | tig0022193:34910-34929 | Msa1397820:intron | 25.0% |
| ! | TAAAAAATGGACAATAGAGA+GGG | - | tig0022193:34911-34930 | Msa1397820:intron | 25.0% |
| !! | ATCTTTTTGGATACTTGAAT+AGG | - | tig0022193:34956-34975 | Msa1397820:intron | 25.0% |
| !! | GTCCTATTTTATGCATTTAT+TGG | - | tig0022193:35034-35053 | Msa1397820:intron | 25.0% |
| !!! | TGCATTTATTGGTTTTCTAT+TGG | - | tig0022193:35045-35064 | Msa1397820:intron | 25.0% |
| !! | TTTCTCATTTGCATAACTTT+TGG | - | tig0022193:35073-35092 | Msa1397820:intron | 25.0% |
| !!! | TACTGTTTTATTGTAGGATT+CGG | + | tig0022193:35335-35354 | None:intergenic | 25.0% |
| !! | AAAAAATTTGAAGTCGAAAG+CGG | - | tig0022193:36098-36117 | Msa1397820:intron | 25.0% |
| ! | AAAAAGTAAGAGACATGTAT+TGG | - | tig0022193:36154-36173 | Msa1397820:intron | 25.0% |
| ! | AAAAGTAAGAGACATGTATT+GGG | - | tig0022193:36155-36174 | Msa1397820:intron | 25.0% |
| ! | AAATACACAATCAAAAAGCT+TGG | - | tig0022193:36253-36272 | Msa1397820:intron | 25.0% |
| ! | AATACACAATCAAAAAGCTT+GGG | - | tig0022193:36254-36273 | Msa1397820:intron | 25.0% |
| TGAAAACAGGAACATTTCTA+TGG | + | tig0022193:33093-33112 | None:intergenic | 30.0% | |
| CTCAAACAAAATCAACAACT+AGG | - | tig0022193:33232-33251 | Msa1397820:CDS | 30.0% | |
| ATGAAACACAAATACTCTCT+CGG | + | tig0022193:33447-33466 | None:intergenic | 30.0% | |
| !! | AGAGAGTATTTGTGTTTCAT+AGG | - | tig0022193:33447-33466 | Msa1397820:CDS | 30.0% |
| GTATTTGTGTTTCATAGGAT+TGG | - | tig0022193:33452-33471 | Msa1397820:CDS | 30.0% | |
| AGTTCTGTTTGGTACAATAT+AGG | - | tig0022193:33641-33660 | Msa1397820:CDS | 30.0% | |
| GTTCTGTTTGGTACAATATA+GGG | - | tig0022193:33642-33661 | Msa1397820:CDS | 30.0% | |
| TTCTGTTTGGTACAATATAG+GGG | - | tig0022193:33643-33662 | Msa1397820:CDS | 30.0% | |
| ACTAACAAAGTCTACATTCA+GGG | + | tig0022193:33745-33764 | None:intergenic | 30.0% | |
| TTTGCAATTTCTCTTCATTC+AGG | - | tig0022193:33865-33884 | Msa1397820:CDS | 30.0% | |
| TTGCAATTTCTCTTCATTCA+GGG | - | tig0022193:33866-33885 | Msa1397820:CDS | 30.0% | |
| ATTCCCCGTAAAATATATAG+CGG | - | tig0022193:33933-33952 | Msa1397820:CDS | 30.0% | |
| ! | AATCCGCTATATATTTTACG+GGG | + | tig0022193:33939-33958 | None:intergenic | 30.0% |
| TTTCAAACACTTAGAAGTTG+TGG | + | tig0022193:34474-34493 | None:intergenic | 30.0% | |
| !!! | TAATTTTTTGGAAATGTGGG+TGG | - | tig0022193:34547-34566 | Msa1397820:CDS | 30.0% |
| ATCAAATAGTTGAGCTGATA+TGG | + | tig0022193:34673-34692 | None:intergenic | 30.0% | |
| ATCCAAAAAGATAGTCTACA+TGG | + | tig0022193:34948-34967 | None:intergenic | 30.0% | |
| AAAACTAACATCCCAATTCA+GGG | + | tig0022193:34983-35002 | None:intergenic | 30.0% | |
| AAAAACTAACATCCCAATTC+AGG | + | tig0022193:34984-35003 | None:intergenic | 30.0% | |
| TTCCCAAAAGATAAACTACT+TGG | - | tig0022193:35166-35185 | Msa1397820:intron | 30.0% | |
| ! | CACCAAGTAGTTTATCTTTT+GGG | + | tig0022193:35171-35190 | None:intergenic | 30.0% |
| ATTCAGTTAAAGGACTATCA+GGG | - | tig0022193:35239-35258 | Msa1397820:intron | 30.0% | |
| ATCTTCGTAATCTTGAAATG+AGG | + | tig0022193:35279-35298 | None:intergenic | 30.0% | |
| ! | TTATTGTAGGATTCGGTATA+AGG | + | tig0022193:35328-35347 | None:intergenic | 30.0% |
| ACAGTAAAAGATCTCAATTC+TGG | - | tig0022193:35349-35368 | Msa1397820:intron | 30.0% | |
| GTAGTTTGGATTTCATTTAG+CGG | - | tig0022193:35403-35422 | Msa1397820:intron | 30.0% | |
| TAAGAAATTGACTGTTGAGA+GGG | + | tig0022193:35576-35595 | None:intergenic | 30.0% | |
| ! | TCTGTTTTCATCATTAACCA+AGG | + | tig0022193:35763-35782 | None:intergenic | 30.0% |
| ! | GACAAAGTTTTCCATTTCTT+AGG | - | tig0022193:35856-35875 | Msa1397820:intron | 30.0% |
| TGATCAAACACATGTTGAAA+TGG | + | tig0022193:36006-36025 | None:intergenic | 30.0% | |
| !! | AATCTTAGCTTGTACTTTGA+AGG | - | tig0022193:36026-36045 | Msa1397820:intron | 30.0% |
| ! | GACAAGAAGCATGATAATAT+TGG | - | tig0022193:36069-36088 | Msa1397820:intron | 30.0% |
| TTCGAAATAACCAGAGTTTA+AGG | + | tig0022193:36136-36155 | None:intergenic | 30.0% | |
| !! | TTAGCCTTACAATCATAGAA+AGG | + | tig0022193:36462-36481 | None:intergenic | 30.0% |
| !! | ACCACTAGTTATTTTGCTTT+AGG | - | tig0022193:36597-36616 | Msa1397820:CDS | 30.0% |
| TCCTAAAGCAAAATAACTAG+TGG | + | tig0022193:36601-36620 | None:intergenic | 30.0% | |
| ! | AGATGAAGAAGACTAGTTGT+AGG | + | tig0022193:33214-33233 | None:intergenic | 35.0% |
| TTGTGTTTCATAGGATTGGA+TGG | - | tig0022193:33456-33475 | Msa1397820:CDS | 35.0% | |
| GACTAACAAAGTCTACATTC+AGG | + | tig0022193:33746-33765 | None:intergenic | 35.0% | |
| ACTAACGAAGTTTGCATTCA+GGG | + | tig0022193:33777-33796 | None:intergenic | 35.0% | |
| ! | CGGATTATATGCTAGCTTAT+AGG | - | tig0022193:33953-33972 | Msa1397820:CDS | 35.0% |
| !! | ATAGCTGATAGTGGATAAAC+TGG | - | tig0022193:33996-34015 | Msa1397820:CDS | 35.0% |
| TTTCTCCCTTTACTATCTCT+TGG | + | tig0022193:34406-34425 | None:intergenic | 35.0% | |
| TCCATATGGCATGATTTATC+CGG | + | tig0022193:34505-34524 | None:intergenic | 35.0% | |
| ! | TTTGGAAGTGTACTTCCATA+TGG | + | tig0022193:34519-34538 | None:intergenic | 35.0% |
| TTGACTAGACTATTGCTTAC+AGG | + | tig0022193:34584-34603 | None:intergenic | 35.0% | |
| AGCAATAGTCTAGTCAAAGA+TGG | - | tig0022193:34587-34606 | Msa1397820:CDS | 35.0% | |
| ! | GACCATGTAGACTATCTTTT+TGG | - | tig0022193:34943-34962 | Msa1397820:intron | 35.0% |
| TACTTGTTTACATGCTCTGT+TGG | - | tig0022193:35010-35029 | Msa1397820:intron | 35.0% | |
| ! | CCACCAAGTAGTTTATCTTT+TGG | + | tig0022193:35172-35191 | None:intergenic | 35.0% |
| CCAAAAGATAAACTACTTGG+TGG | - | tig0022193:35169-35188 | Msa1397820:intron | 35.0% | |
| GTCCTTTAACTGAATGATAC+CGG | + | tig0022193:35234-35253 | None:intergenic | 35.0% | |
| CATTCAGTTAAAGGACTATC+AGG | - | tig0022193:35238-35257 | Msa1397820:intron | 35.0% | |
| CGTAATCTTGAAATGAGGTA+AGG | + | tig0022193:35274-35293 | None:intergenic | 35.0% | |
| !!! | TATAAGGTCCGCATTTTTTG+TGG | + | tig0022193:35312-35331 | None:intergenic | 35.0% |
| AAACTACGTACTTACAGTCT+GGG | + | tig0022193:35390-35409 | None:intergenic | 35.0% | |
| TGGATTTCATTTAGCGGTTT+AGG | - | tig0022193:35409-35428 | Msa1397820:intron | 35.0% | |
| GGATTTCATTTAGCGGTTTA+GGG | - | tig0022193:35410-35429 | Msa1397820:intron | 35.0% | |
| ATACAGAAATGCAGAAGCTA+AGG | + | tig0022193:35449-35468 | None:intergenic | 35.0% | |
| CTAAGAAATTGACTGTTGAG+AGG | + | tig0022193:35577-35596 | None:intergenic | 35.0% | |
| AAATGAAGGTAGACAGAAGA+AGG | + | tig0022193:35670-35689 | None:intergenic | 35.0% | |
| TTCTTCTGTCTACCTTCATT+TGG | - | tig0022193:35669-35688 | Msa1397820:intron | 35.0% | |
| CATAATCATGCACCAAATGA+AGG | + | tig0022193:35684-35703 | None:intergenic | 35.0% | |
| AATTTCTGCAGAAAGTTCCT+TGG | - | tig0022193:35743-35762 | Msa1397820:intron | 35.0% | |
| ACAGCATCAAGAATAACGAT+GGG | + | tig0022193:35798-35817 | None:intergenic | 35.0% | |
| CAGTAATCTCTTTCCAAACA+AGG | - | tig0022193:35834-35853 | Msa1397820:intron | 35.0% | |
| TGGAAAACTTTGTCCTTGTT+TGG | + | tig0022193:35850-35869 | None:intergenic | 35.0% | |
| ! | AAGTTTTCCATTTCTTAGGC+AGG | - | tig0022193:35860-35879 | Msa1397820:intron | 35.0% |
| ACAAATACCTGCCTAAGAAA+TGG | + | tig0022193:35870-35889 | None:intergenic | 35.0% | |
| TTCACCCTACAAACAAAGTT+TGG | - | tig0022193:35890-35909 | Msa1397820:intron | 35.0% | |
| TCACCCTACAAACAAAGTTT+GGG | - | tig0022193:35891-35910 | Msa1397820:intron | 35.0% | |
| ! | ATCCCCAAACTTTGTTTGTA+GGG | + | tig0022193:35897-35916 | None:intergenic | 35.0% |
| ! | AATCCCCAAACTTTGTTTGT+AGG | + | tig0022193:35898-35917 | None:intergenic | 35.0% |
| AAACACATGTTGAAATGGAC+CGG | + | tig0022193:36001-36020 | None:intergenic | 35.0% | |
| CTAATGACATCCTTAAACTC+TGG | - | tig0022193:36123-36142 | Msa1397820:intron | 35.0% | |
| GTAAACACCAATAACTTCTC+CGG | + | tig0022193:36196-36215 | None:intergenic | 35.0% | |
| ATTGAGTTTAACCGATGTGT+TGG | - | tig0022193:36290-36309 | Msa1397820:intron | 35.0% | |
| TCAGGTTTGTATAGTATCCA+AGG | + | tig0022193:36372-36391 | None:intergenic | 35.0% | |
| TCCTCCTTTCTATGATTGTA+AGG | - | tig0022193:36455-36474 | Msa1397820:intron | 35.0% | |
| TATGATTGTAAGGCTAAGAG+AGG | - | tig0022193:36465-36484 | Msa1397820:intron | 35.0% | |
| ACATTGTGAGGATATGAGTT+GGG | - | tig0022193:36521-36540 | Msa1397820:CDS | 35.0% | |
| TGGAGAAGATGGAAGAATGA+AGG | + | tig0022193:33173-33192 | None:intergenic | 40.0% | |
| !! | GTTGATGATGATGGAGAAGA+TGG | + | tig0022193:33184-33203 | None:intergenic | 40.0% |
| !! | GGAGTTGTAGTTGATGATGA+TGG | + | tig0022193:33193-33212 | None:intergenic | 40.0% |
| ! | CCTAATATGAAACACCGACT+CGG | - | tig0022193:33339-33358 | Msa1397820:CDS | 40.0% |
| CACAAATACTCTCTCGGATT+AGG | + | tig0022193:33441-33460 | None:intergenic | 40.0% | |
| ! | AGTCACTTTAGTCCCTGAAT+CGG | - | tig0022193:33670-33689 | Msa1397820:CDS | 40.0% |
| GACTAATTCCTTCCGATTCA+GGG | + | tig0022193:33685-33704 | None:intergenic | 40.0% | |
| TGACTAATTCCTTCCGATTC+AGG | + | tig0022193:33686-33705 | None:intergenic | 40.0% | |
| GACTAACGAAGTTTGCATTC+AGG | + | tig0022193:33778-33797 | None:intergenic | 40.0% | |
| ACTAACGGAGTCTACATTCA+GGG | + | tig0022193:33809-33828 | None:intergenic | 40.0% | |
| TCAGGGACTAAAGTGACTAA+CGG | + | tig0022193:33914-33933 | None:intergenic | 40.0% | |
| TCATTCAGGGACTAAAGTGA+CGG | - | tig0022193:33879-33898 | Msa1397820:CDS | 40.0% | |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | + | tig0022193:33670-33689 | None:intergenic | 40.0% |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | + | tig0022193:33669-33688 | None:intergenic | 40.0% |
| ! | AGCTAGCTTATAGCTGATAG+TGG | - | tig0022193:33987-34006 | Msa1397820:CDS | 40.0% |
| TCTTAACCCTCTCTTTGTCA+CGG | - | tig0022193:34365-34384 | Msa1397820:CDS | 40.0% | |
| TTCGGCCAAGAGATAGTAAA+GGG | - | tig0022193:34398-34417 | Msa1397820:CDS | 40.0% | |
| TCCGGATAAATCATGCCATA+TGG | - | tig0022193:34501-34520 | Msa1397820:CDS | 40.0% | |
| !!! | TTTTTTGGAAATGTGGGTGG+AGG | - | tig0022193:34550-34569 | Msa1397820:CDS | 40.0% |
| AGTCAAAGATGGTTTCAGTC+AGG | - | tig0022193:34598-34617 | Msa1397820:CDS | 40.0% | |
| !! | TGGTTTTCTGACATTGGCTA+AGG | - | tig0022193:34702-34721 | Msa1397820:intron | 40.0% |
| ACTTGAATAGGTCCCTGAAT+TGG | - | tig0022193:34968-34987 | Msa1397820:intron | 40.0% | |
| CTTGAATAGGTCCCTGAATT+GGG | - | tig0022193:34969-34988 | Msa1397820:intron | 40.0% | |
| !! | TGGGAACTCTTTAGAATCAG+AGG | + | tig0022193:35152-35171 | None:intergenic | 40.0% |
| AGCCGGTATCATTCAGTTAA+AGG | - | tig0022193:35229-35248 | Msa1397820:intron | 40.0% | |
| CTTGAAATGAGGTAAGGAGA+TGG | + | tig0022193:35268-35287 | None:intergenic | 40.0% | |
| GAAGCTCTCCACAAAAAATG+CGG | - | tig0022193:35301-35320 | Msa1397820:intron | 40.0% | |
| AACTACGTACTTACAGTCTG+GGG | + | tig0022193:35389-35408 | None:intergenic | 40.0% | |
| CAAACTACGTACTTACAGTC+TGG | + | tig0022193:35391-35410 | None:intergenic | 40.0% | |
| CAGACTGTAAGTACGTAGTT+TGG | - | tig0022193:35389-35408 | Msa1397820:intron | 40.0% | |
| CCAAAAGAACACGATTTGTG+AGG | + | tig0022193:35477-35496 | None:intergenic | 40.0% | |
| ! | CCTCACAAATCGTGTTCTTT+TGG | - | tig0022193:35474-35493 | Msa1397820:intron | 40.0% |
| CAGAAATCTGATCACTGTCA+TGG | - | tig0022193:35604-35623 | Msa1397820:intron | 40.0% | |
| !! | GTAGACAGAAGAAGGTACTT+TGG | + | tig0022193:35662-35681 | None:intergenic | 40.0% |
| ! | GGTGCATGATTATGATGATG+AGG | - | tig0022193:35690-35709 | Msa1397820:intron | 40.0% |
| GACAGCATCAAGAATAACGA+TGG | + | tig0022193:35799-35818 | None:intergenic | 40.0% | |
| ! | CTTGATGCTGTCTTTTGATC+AGG | - | tig0022193:35807-35826 | Msa1397820:intron | 40.0% |
| CACCCTACAAACAAAGTTTG+GGG | - | tig0022193:35892-35911 | Msa1397820:intron | 40.0% | |
| AACACATGTTGAAATGGACC+GGG | + | tig0022193:36000-36019 | None:intergenic | 40.0% | |
| TCATGCTTCTTGTCAACATC+AGG | + | tig0022193:36063-36082 | None:intergenic | 40.0% | |
| !! | CAGTTTGTTGATATCCCTCA+TGG | + | tig0022193:36227-36246 | None:intergenic | 40.0% |
| ACTAGCTCATGGTCTACTTT+CGG | - | tig0022193:36315-36334 | Msa1397820:intron | 40.0% | |
| ! | AAAGGAGGAGCATGAAAACA+CGG | + | tig0022193:36444-36463 | None:intergenic | 40.0% |
| GCCTTACAATCATAGAAAGG+AGG | + | tig0022193:36459-36478 | None:intergenic | 40.0% | |
| TCCTCATGTAAGACATTGTG+AGG | - | tig0022193:36509-36528 | Msa1397820:CDS | 40.0% | |
| TCCTCACAATGTCTTACATG+AGG | + | tig0022193:36513-36532 | None:intergenic | 40.0% | |
| GACATTGTGAGGATATGAGT+TGG | - | tig0022193:36520-36539 | Msa1397820:CDS | 40.0% | |
| CATTGTGAGGATATGAGTTG+GGG | - | tig0022193:36522-36541 | Msa1397820:CDS | 40.0% | |
| AAGCGAGTGGAAGTGAAAAC+AGG | + | tig0022193:33106-33125 | None:intergenic | 45.0% | |
| ! | CCGAGTCGGTGTTTCATATT+AGG | + | tig0022193:33342-33361 | None:intergenic | 45.0% |
| ACTTTAGTCCCTGAATCGGA+AGG | - | tig0022193:33674-33693 | Msa1397820:CDS | 45.0% | |
| GACTAACGGAGTCTACATTC+AGG | + | tig0022193:33810-33829 | None:intergenic | 45.0% | |
| TCCCTGAAATTGACCATGCA+GGG | - | tig0022193:33837-33856 | Msa1397820:CDS | 45.0% | |
| TCCCTGCATGGTCAATTTCA+GGG | + | tig0022193:33841-33860 | None:intergenic | 45.0% | |
| ATTGCAAAACAGTCCCTGCA+TGG | + | tig0022193:33853-33872 | None:intergenic | 45.0% | |
| TCACTACCGTGACAAAGAGA+GGG | + | tig0022193:34374-34393 | None:intergenic | 45.0% | |
| TTCACTACCGTGACAAAGAG+AGG | + | tig0022193:34375-34394 | None:intergenic | 45.0% | |
| TGTCACGGTAGTGAACAGTT+CGG | - | tig0022193:34380-34399 | Msa1397820:CDS | 45.0% | |
| GTTCGGCCAAGAGATAGTAA+AGG | - | tig0022193:34397-34416 | Msa1397820:CDS | 45.0% | |
| GTTTCAGTCAGGATCGAACT+CGG | - | tig0022193:34609-34628 | Msa1397820:intron | 45.0% | |
| ! | AGGATCGAACTCGGTTTTTC+CGG | - | tig0022193:34618-34637 | Msa1397820:intron | 45.0% |
| ATGATAGATCCTGTCTCAGC+CGG | - | tig0022193:35212-35231 | Msa1397820:intron | 45.0% | |
| AGTCTGGGGACTCACTTAAA+TGG | + | tig0022193:35375-35394 | None:intergenic | 45.0% | |
| CATTTAGCGGTTTAGGGAAC+AGG | - | tig0022193:35416-35435 | Msa1397820:intron | 45.0% | |
| ! | AACCAGGAGACATCTGGAAT+CGG | + | tig0022193:35538-35557 | None:intergenic | 45.0% |
| TGTTGAGAGGGAAATCAGGA+GGG | + | tig0022193:35564-35583 | None:intergenic | 45.0% | |
| TGACTGTTGAGAGGGAAATC+AGG | + | tig0022193:35568-35587 | None:intergenic | 45.0% | |
| ! | GCCAACGTTGATGAAAGAGT+CGG | - | tig0022193:35946-35965 | Msa1397820:intron | 45.0% |
| AAAGAGTCGGCATCCAGATT+AGG | - | tig0022193:35959-35978 | Msa1397820:intron | 45.0% | |
| AAGAGTCGGCATCCAGATTA+GGG | - | tig0022193:35960-35979 | Msa1397820:intron | 45.0% | |
| TCGTGTCGAAAACCCTAATC+TGG | + | tig0022193:35975-35994 | None:intergenic | 45.0% | |
| TGGGAATATCCAACTGTGAC+CGG | - | tig0022193:36174-36193 | Msa1397820:intron | 45.0% | |
| ATAACTTCTCCGGTCACAGT+TGG | + | tig0022193:36186-36205 | None:intergenic | 45.0% | |
| ACTGTGACCGGAGAAGTTAT+TGG | - | tig0022193:36186-36205 | Msa1397820:intron | 45.0% | |
| TGTTTACCAACCAAGCCATG+AGG | - | tig0022193:36209-36228 | Msa1397820:intron | 45.0% | |
| GTTTACCAACCAAGCCATGA+GGG | - | tig0022193:36210-36229 | Msa1397820:intron | 45.0% | |
| TGTTGATATCCCTCATGGCT+TGG | + | tig0022193:36222-36241 | None:intergenic | 45.0% | |
| TGAGCTAGTCACCAACACAT+CGG | + | tig0022193:36304-36323 | None:intergenic | 45.0% | |
| !! | ATGTGTTGGTGACTAGCTCA+TGG | - | tig0022193:36304-36323 | Msa1397820:intron | 45.0% |
| ATTGACATTGCACGTCGACA+AGG | + | tig0022193:36417-36436 | None:intergenic | 45.0% | |
| TTGTCGACGTGCAATGTCAA+TGG | - | tig0022193:36416-36435 | Msa1397820:intron | 45.0% | |
| ! | GGATATGAGTTGGGGTCTTA+AGG | - | tig0022193:36530-36549 | Msa1397820:CDS | 45.0% |
| GAGAGAAGCGAATAAGCGAG+TGG | + | tig0022193:33119-33138 | None:intergenic | 50.0% | |
| ATCAGTGTCTGTGTCCGAGT+CGG | + | tig0022193:33356-33375 | None:intergenic | 50.0% | |
| GTCCCTGAAATTGACCATGC+AGG | - | tig0022193:33836-33855 | Msa1397820:CDS | 50.0% | |
| GTCCCTGCATGGTCAATTTC+AGG | + | tig0022193:33842-33861 | None:intergenic | 50.0% | |
| CTTTAGTCCCTGAATGGGAG+AGG | + | tig0022193:33907-33926 | None:intergenic | 50.0% | |
| !! | CTTGGTGGACTTCTAGCATC+TGG | - | tig0022193:35184-35203 | Msa1397820:intron | 50.0% |
| ! | TGAATGATACCGGCTGAGAC+AGG | + | tig0022193:35224-35243 | None:intergenic | 50.0% |
| !! | CGTGTTCTTTTGGTTGACCC+TGG | - | tig0022193:35484-35503 | Msa1397820:intron | 50.0% |
| !! | GATCGACCATATCGACTCCA+GGG | + | tig0022193:35504-35523 | None:intergenic | 50.0% |
| !! | AGATCGACCATATCGACTCC+AGG | + | tig0022193:35505-35524 | None:intergenic | 50.0% |
| ! | AACCGATTCCAGATGTCTCC+TGG | - | tig0022193:35533-35552 | Msa1397820:intron | 50.0% |
| GAAATCAGGAGGGAGAAACC+AGG | + | tig0022193:35554-35573 | None:intergenic | 50.0% | |
| CTGTTGAGAGGGAAATCAGG+AGG | + | tig0022193:35565-35584 | None:intergenic | 50.0% | |
| ! | GCCGACTCTTTCATCAACGT+TGG | + | tig0022193:35950-35969 | None:intergenic | 50.0% |
| !! | GATATCCCTCATGGCTTGGT+TGG | + | tig0022193:36218-36237 | None:intergenic | 50.0% |
| TCAGGAGCAGTTTCGTTCTC+AGG | + | tig0022193:36390-36409 | None:intergenic | 50.0% | |
| ! | TGACGGATCCTCTCCCATTC+AGG | - | tig0022193:33896-33915 | Msa1397820:CDS | 55.0% |
| GACGGATCCTCTCCCATTCA+GGG | - | tig0022193:33897-33916 | Msa1397820:CDS | 55.0% | |
| GGTTGACCCTGGAGTCGATA+TGG | - | tig0022193:35495-35514 | Msa1397820:intron | 55.0% | |
| GGGAGAAACCAGGAGACATC+TGG | + | tig0022193:35544-35563 | None:intergenic | 55.0% | |
| ! | AGGGTTTTCGACACGAGACC+CGG | - | tig0022193:35979-35998 | Msa1397820:intron | 55.0% |
| TACTTTCGGCTACGTCGCAC+AGG | - | tig0022193:36329-36348 | Msa1397820:intron | 55.0% | |
| ACTTTCGGCTACGTCGCACA+GGG | - | tig0022193:36330-36349 | Msa1397820:intron | 55.0% | |
| ! | GGCTCGGAGGTTTGAAACCT+TGG | - | tig0022193:36352-36371 | Msa1397820:intron | 55.0% |
| GACATTGCACGTCGACAAGG+AGG | + | tig0022193:36414-36433 | None:intergenic | 55.0% | |
| !! | GCTAAGAGAGGCACTGACAC+AGG | - | tig0022193:36477-36496 | Msa1397820:intron | 55.0% |
| CTTTCGGCTACGTCGCACAG+GGG | - | tig0022193:36331-36350 | Msa1397820:intron | 60.0% | |
| GCACGTCGACAAGGAGGATC+AGG | + | tig0022193:36408-36427 | None:intergenic | 60.0% | |
| GGCTACGTCGCACAGGGGCT+CGG | - | tig0022193:36336-36355 | Msa1397820:intron | 70.0% | |
| TACGTCGCACAGGGGCTCGG+AGG | - | tig0022193:36339-36358 | Msa1397820:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022193 | gene | 33074 | 36683 | 33074 | ID=Msa1397820;Name=Msa1397820 |
| tig0022193 | mRNA | 33074 | 36683 | 33074 | ID=Msa1397820-mRNA-1;Parent=Msa1397820;Name=Msa1397820-mRNA-1;_AED=0.01;_eAED=0.01;_QI=5|1|1|1|1|1|2|102|540 |
| tig0022193 | exon | 33074 | 34623 | 33074 | ID=Msa1397820-mRNA-1:exon:16321;Parent=Msa1397820-mRNA-1 |
| tig0022193 | exon | 36504 | 36683 | 36504 | ID=Msa1397820-mRNA-1:exon:16320;Parent=Msa1397820-mRNA-1 |
| tig0022193 | five_prime_UTR | 36679 | 36683 | 36679 | ID=Msa1397820-mRNA-1:five_prime_utr;Parent=Msa1397820-mRNA-1 |
| tig0022193 | CDS | 36504 | 36678 | 36504 | ID=Msa1397820-mRNA-1:cds;Parent=Msa1397820-mRNA-1 |
| tig0022193 | CDS | 33176 | 34623 | 33176 | ID=Msa1397820-mRNA-1:cds;Parent=Msa1397820-mRNA-1 |
| tig0022193 | three_prime_UTR | 33074 | 33175 | 33074 | ID=Msa1397820-mRNA-1:three_prime_utr;Parent=Msa1397820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
