Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0355260 | XP_013459426.1 | 97.222 | 540 | 15 | 0 | 1 | 540 | 1 | 540 | 0.0 | 1091 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0355260 | sp|Q9M5Q1|FUT1_PEA | 77.247 | 523 | 112 | 2 | 16 | 535 | 47 | 565 | 0.0 | 844 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0355260 | A0A072UV20 | 97.222 | 540 | 15 | 0 | 1 | 540 | 1 | 540 | 0.0 | 1091 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0337700 | Msa0355260 | 0.801479 | 8.830087e-49 | -8.615850e-47 |
| Msa0355260 | Msa0402320 | 0.986012 | 2.174694e-165 | -8.615850e-47 |
| Msa0355260 | Msa0623710 | 0.963274 | 6.934761e-122 | -8.615850e-47 |
| Msa0355260 | Msa0626450 | 0.802421 | 5.655029e-49 | -8.615850e-47 |
| Msa0355260 | Msa0861600 | 0.802349 | 5.850900e-49 | -8.615850e-47 |
| Msa0355260 | Msa1397820 | 0.964458 | 2.364704e-123 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0355260 | MtrunA17_Chr3g0091781 | 97.222 | 540 | 15 | 0 | 1 | 540 | 1 | 540 | 0.0 | 1091 |
| Msa0355260 | MtrunA17_Chr4g0060941 | 76.852 | 540 | 117 | 4 | 3 | 535 | 38 | 576 | 0.0 | 855 |
| Msa0355260 | MtrunA17_Chr8g0388711 | 50.638 | 470 | 221 | 4 | 73 | 536 | 120 | 584 | 8.31e-165 | 480 |
| Msa0355260 | MtrunA17_Chr1g0196981 | 50.106 | 471 | 221 | 4 | 73 | 535 | 22 | 486 | 1.06e-164 | 476 |
| Msa0355260 | MtrunA17_Chr2g0286741 | 44.515 | 474 | 243 | 8 | 72 | 534 | 111 | 575 | 1.70e-134 | 402 |
| Msa0355260 | MtrunA17_Chr4g0001511 | 43.949 | 471 | 247 | 7 | 72 | 535 | 249 | 709 | 2.83e-130 | 396 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0355260 | AT2G03220.1 | 62.642 | 530 | 175 | 4 | 14 | 533 | 42 | 558 | 0.0 | 681 |
| Msa0355260 | AT2G03210.2 | 58.252 | 515 | 193 | 7 | 31 | 535 | 70 | 572 | 0.0 | 620 |
| Msa0355260 | AT2G03210.1 | 58.252 | 515 | 193 | 7 | 31 | 535 | 36 | 538 | 0.0 | 620 |
| Msa0355260 | AT2G03210.3 | 60.163 | 492 | 179 | 6 | 60 | 535 | 79 | 569 | 0.0 | 619 |
| Msa0355260 | AT1G14100.1 | 55.268 | 503 | 205 | 7 | 48 | 536 | 20 | 516 | 0.0 | 551 |
| Msa0355260 | AT1G14080.1 | 53.144 | 493 | 217 | 5 | 55 | 535 | 46 | 536 | 0.0 | 538 |
| Msa0355260 | AT2G15350.1 | 52.130 | 493 | 222 | 9 | 55 | 535 | 23 | 513 | 2.42e-177 | 510 |
| Msa0355260 | AT2G15390.1 | 51.760 | 483 | 221 | 6 | 64 | 535 | 21 | 502 | 4.34e-177 | 509 |
| Msa0355260 | AT2G15390.2 | 51.767 | 481 | 220 | 6 | 65 | 534 | 54 | 533 | 9.92e-177 | 509 |
| Msa0355260 | AT2G15370.1 | 50.840 | 476 | 225 | 6 | 69 | 535 | 57 | 532 | 7.77e-169 | 489 |
| Msa0355260 | AT1G14110.1 | 51.452 | 482 | 182 | 6 | 60 | 534 | 33 | 469 | 9.36e-168 | 484 |
| Msa0355260 | AT1G74420.2 | 49.000 | 500 | 229 | 10 | 16 | 506 | 42 | 524 | 3.96e-161 | 469 |
| Msa0355260 | AT1G74420.3 | 49.000 | 500 | 229 | 10 | 16 | 506 | 80 | 562 | 3.43e-160 | 468 |
| Msa0355260 | AT1G74420.1 | 49.004 | 502 | 222 | 11 | 16 | 506 | 42 | 520 | 4.13e-160 | 466 |
| Msa0355260 | AT1G74420.4 | 49.004 | 502 | 222 | 11 | 16 | 506 | 80 | 558 | 3.21e-159 | 465 |
Find 120 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGAAATAACCAGAGTTTA+AGG | 0.121631 | 3_1:-29139944 | None:intergenic |
| TGGATTTCATTTAGCGGTTT+AGG | 0.197340 | 3_1:+29139220 | Msa0355260:CDS |
| CCTCACAAATCGTGTTCTTT+TGG | 0.256519 | 3_1:+29139285 | Msa0355260:CDS |
| CCACCAAGTAGTTTATCTTT+TGG | 0.261850 | 3_1:-29138980 | None:intergenic |
| TGGAAAACTTTGTCCTTGTT+TGG | 0.264766 | 3_1:-29139658 | None:intergenic |
| AGCCGGTATCATTCAGTTAA+AGG | 0.272487 | 3_1:+29139040 | Msa0355260:CDS |
| TTATTGTAGGATTCGGTATA+AGG | 0.276356 | 3_1:-29139136 | None:intergenic |
| TTCACCCTACAAACAAAGTT+TGG | 0.276712 | 3_1:+29139701 | Msa0355260:CDS |
| CATTCAGTTAAAGGACTATC+AGG | 0.303102 | 3_1:+29139049 | Msa0355260:CDS |
| GGATTTCATTTAGCGGTTTA+GGG | 0.303332 | 3_1:+29139221 | Msa0355260:CDS |
| AATATAGCATGCACTCAATA+TGG | 0.323248 | 3_1:-29140485 | None:intergenic |
| AATCTTAGCTTGTACTTTGA+AGG | 0.325331 | 3_1:+29139837 | Msa0355260:CDS |
| GGATATGAGTTGGGGTCTTA+AGG | 0.326106 | 3_1:+29140341 | Msa0355260:CDS |
| ACAGTAAAAGATCTCAATTC+TGG | 0.327111 | 3_1:+29139160 | Msa0355260:CDS |
| AGATGAAGAAGACTAGTTGT+AGG | 0.331724 | 3_1:-29137022 | None:intergenic |
| AGTCTGGGGACTCACTTAAA+TGG | 0.332705 | 3_1:-29139183 | None:intergenic |
| GACAAGAAGCATGATAATAT+TGG | 0.332745 | 3_1:+29139880 | Msa0355260:CDS |
| TTCTTCTGTCTACCTTCATT+TGG | 0.339147 | 3_1:+29139480 | Msa0355260:CDS |
| CATTTAGCGGTTTAGGGAAC+AGG | 0.347183 | 3_1:+29139227 | Msa0355260:CDS |
| TGAAAACAGGAACATTTCTA+TGG | 0.353966 | 3_1:-29136901 | None:intergenic |
| TCACCCTACAAACAAAGTTT+GGG | 0.356509 | 3_1:+29139702 | Msa0355260:CDS |
| AATCCCCAAACTTTGTTTGT+AGG | 0.359650 | 3_1:-29139706 | None:intergenic |
| TGATCAAACACATGTTGAAA+TGG | 0.363067 | 3_1:-29139814 | None:intergenic |
| GGTTGACCCTGGAGTCGATA+TGG | 0.378603 | 3_1:+29139306 | Msa0355260:CDS |
| AAGAGTCGGCATCCAGATTA+GGG | 0.381150 | 3_1:+29139771 | Msa0355260:CDS |
| AAAGAGTCGGCATCCAGATT+AGG | 0.381207 | 3_1:+29139770 | Msa0355260:CDS |
| TCAGGAGCAGTTTCGTTCTC+AGG | 0.396736 | 3_1:-29140198 | None:intergenic |
| CAAACTACGTACTTACAGTC+TGG | 0.400090 | 3_1:-29139199 | None:intergenic |
| TCCTCCTTTCTATGATTGTA+AGG | 0.401474 | 3_1:+29140266 | Msa0355260:CDS |
| CAGACTGTAAGTACGTAGTT+TGG | 0.407993 | 3_1:+29139200 | Msa0355260:CDS |
| ACAAATACCTGCCTAAGAAA+TGG | 0.409190 | 3_1:-29139678 | None:intergenic |
| TCGTGTCGAAAACCCTAATC+TGG | 0.411005 | 3_1:-29139783 | None:intergenic |
| GGGAGAAACCAGGAGACATC+TGG | 0.412994 | 3_1:-29139352 | None:intergenic |
| GGCTACGTCGCACAGGGGCT+CGG | 0.431212 | 3_1:+29140147 | Msa0355260:CDS |
| TGACTGTTGAGAGGGAAATC+AGG | 0.431783 | 3_1:-29139376 | None:intergenic |
| CTTGGTGGACTTCTAGCATC+TGG | 0.432274 | 3_1:+29138995 | Msa0355260:CDS |
| GGCTCGGAGGTTTGAAACCT+TGG | 0.432875 | 3_1:+29140163 | Msa0355260:CDS |
| TCATGCTTCTTGTCAACATC+AGG | 0.434329 | 3_1:-29139871 | None:intergenic |
| ACTAGCTCATGGTCTACTTT+CGG | 0.435497 | 3_1:+29140126 | Msa0355260:CDS |
| ATCCCCAAACTTTGTTTGTA+GGG | 0.440499 | 3_1:-29139705 | None:intergenic |
| CAGTTTGTTGATATCCCTCA+TGG | 0.442703 | 3_1:-29140035 | None:intergenic |
| ATGCACTCAATATGGAGTTA+TGG | 0.449948 | 3_1:-29140477 | None:intergenic |
| ACATTGTGAGGATATGAGTT+GGG | 0.455716 | 3_1:+29140332 | Msa0355260:CDS |
| TACTTTCGGCTACGTCGCAC+AGG | 0.456550 | 3_1:+29140140 | Msa0355260:CDS |
| AAAAGTAAGAGACATGTATT+GGG | 0.462487 | 3_1:+29139966 | Msa0355260:CDS |
| GCACGTCGACAAGGAGGATC+AGG | 0.467846 | 3_1:-29140216 | None:intergenic |
| AAGCGAGTGGAAGTGAAAAC+AGG | 0.468053 | 3_1:-29136914 | None:intergenic |
| AATTTCTGCAGAAAGTTCCT+TGG | 0.468138 | 3_1:+29139554 | Msa0355260:CDS |
| TAGTTATTGAAGTTATGAAT+TGG | 0.473063 | 3_1:+29140383 | Msa0355260:exon |
| TTGTCGACGTGCAATGTCAA+TGG | 0.481831 | 3_1:+29140227 | Msa0355260:CDS |
| AACCGATTCCAGATGTCTCC+TGG | 0.488031 | 3_1:+29139344 | Msa0355260:CDS |
| AAACACATGTTGAAATGGAC+CGG | 0.499080 | 3_1:-29139809 | None:intergenic |
| GAAATCAGGAGGGAGAAACC+AGG | 0.499580 | 3_1:-29139362 | None:intergenic |
| GTAGACAGAAGAAGGTACTT+TGG | 0.501837 | 3_1:-29139470 | None:intergenic |
| TGTTGATATCCCTCATGGCT+TGG | 0.503548 | 3_1:-29140030 | None:intergenic |
| GTTGATGATGATGGAGAAGA+TGG | 0.505194 | 3_1:-29136992 | None:intergenic |
| TGGAGAAGATGGAAGAATGA+AGG | 0.510549 | 3_1:-29136981 | None:intergenic |
| GTCCTTTAACTGAATGATAC+CGG | 0.510788 | 3_1:-29139042 | None:intergenic |
| TCAGGTTTGTATAGTATCCA+AGG | 0.511855 | 3_1:-29140180 | None:intergenic |
| GACATTGTGAGGATATGAGT+TGG | 0.512210 | 3_1:+29140331 | Msa0355260:CDS |
| TGGGAATATCCAACTGTGAC+CGG | 0.515749 | 3_1:+29139985 | Msa0355260:CDS |
| CGTAATCTTGAAATGAGGTA+AGG | 0.517518 | 3_1:-29139082 | None:intergenic |
| TGAATGATACCGGCTGAGAC+AGG | 0.522502 | 3_1:-29139032 | None:intergenic |
| ACTGTGACCGGAGAAGTTAT+TGG | 0.523131 | 3_1:+29139997 | Msa0355260:CDS |
| GGAGTTGTAGTTGATGATGA+TGG | 0.523701 | 3_1:-29137001 | None:intergenic |
| GTAAACACCAATAACTTCTC+CGG | 0.525651 | 3_1:-29140004 | None:intergenic |
| CTAATGACATCCTTAAACTC+TGG | 0.526399 | 3_1:+29139934 | Msa0355260:CDS |
| CATAATCATGCACCAAATGA+AGG | 0.526474 | 3_1:-29139492 | None:intergenic |
| TGGGAACTCTTTAGAATCAG+AGG | 0.528580 | 3_1:-29138960 | None:intergenic |
| AGATCGACCATATCGACTCC+AGG | 0.528983 | 3_1:-29139313 | None:intergenic |
| TTCCCAAAAGATAAACTACT+TGG | 0.532835 | 3_1:+29138977 | Msa0355260:CDS |
| AACCAGGAGACATCTGGAAT+CGG | 0.534399 | 3_1:-29139346 | None:intergenic |
| AAACTACGTACTTACAGTCT+GGG | 0.536165 | 3_1:-29139198 | None:intergenic |
| AAATGAAGGTAGACAGAAGA+AGG | 0.539324 | 3_1:-29139478 | None:intergenic |
| CAGAAATCTGATCACTGTCA+TGG | 0.540196 | 3_1:+29139415 | Msa0355260:CDS |
| CCAAAAGATAAACTACTTGG+TGG | 0.541266 | 3_1:+29138980 | Msa0355260:CDS |
| TTAGCCTTACAATCATAGAA+AGG | 0.543257 | 3_1:-29140270 | None:intergenic |
| GTAGTTTGGATTTCATTTAG+CGG | 0.558001 | 3_1:+29139214 | Msa0355260:CDS |
| ATGATAGATCCTGTCTCAGC+CGG | 0.563399 | 3_1:+29139023 | Msa0355260:CDS |
| GATATCCCTCATGGCTTGGT+TGG | 0.563961 | 3_1:-29140026 | None:intergenic |
| CTTGAAATGAGGTAAGGAGA+TGG | 0.564341 | 3_1:-29139076 | None:intergenic |
| CAGTAATCTCTTTCCAAACA+AGG | 0.565980 | 3_1:+29139645 | Msa0355260:CDS |
| ATAACTTCTCCGGTCACAGT+TGG | 0.569629 | 3_1:-29139994 | None:intergenic |
| ATACAGAAATGCAGAAGCTA+AGG | 0.572547 | 3_1:-29139257 | None:intergenic |
| TCCTCATGTAAGACATTGTG+AGG | 0.572556 | 3_1:+29140320 | Msa0355260:CDS |
| TAAGAAATTGACTGTTGAGA+GGG | 0.572937 | 3_1:-29139384 | None:intergenic |
| GACAGCATCAAGAATAACGA+TGG | 0.573964 | 3_1:-29139607 | None:intergenic |
| ATTGAGTTTAACCGATGTGT+TGG | 0.587338 | 3_1:+29140101 | Msa0355260:CDS |
| CTAAGAAATTGACTGTTGAG+AGG | 0.591251 | 3_1:-29139385 | None:intergenic |
| ATCTTCGTAATCTTGAAATG+AGG | 0.597371 | 3_1:-29139087 | None:intergenic |
| GCCGACTCTTTCATCAACGT+TGG | 0.598421 | 3_1:-29139758 | None:intergenic |
| CTCAAACAAAATCAACAACT+AGG | 0.602192 | 3_1:+29137043 | Msa0355260:CDS |
| ACTTTCGGCTACGTCGCACA+GGG | 0.602869 | 3_1:+29140141 | Msa0355260:CDS |
| ATTCAGTTAAAGGACTATCA+GGG | 0.603770 | 3_1:+29139050 | Msa0355260:CDS |
| GCTAAGAGAGGCACTGACAC+AGG | 0.606195 | 3_1:+29140288 | Msa0355260:CDS |
| CACCCTACAAACAAAGTTTG+GGG | 0.613565 | 3_1:+29139703 | Msa0355260:CDS |
| TATGATTGTAAGGCTAAGAG+AGG | 0.617643 | 3_1:+29140276 | Msa0355260:CDS |
| TCCTAAAGCAAAATAACTAG+TGG | 0.619595 | 3_1:-29140409 | None:intergenic |
| ATTGACATTGCACGTCGACA+AGG | 0.621481 | 3_1:-29140225 | None:intergenic |
| GCCAACGTTGATGAAAGAGT+CGG | 0.622353 | 3_1:+29139757 | Msa0355260:CDS |
| GTTTACCAACCAAGCCATGA+GGG | 0.622486 | 3_1:+29140021 | Msa0355260:CDS |
| ACAGCATCAAGAATAACGAT+GGG | 0.630626 | 3_1:-29139606 | None:intergenic |
| CTGTTGAGAGGGAAATCAGG+AGG | 0.631751 | 3_1:-29139373 | None:intergenic |
| AACACATGTTGAAATGGACC+GGG | 0.633166 | 3_1:-29139808 | None:intergenic |
| CATTGTGAGGATATGAGTTG+GGG | 0.637118 | 3_1:+29140333 | Msa0355260:CDS |
| ATGTGTTGGTGACTAGCTCA+TGG | 0.637268 | 3_1:+29140115 | Msa0355260:CDS |
| GGTGCATGATTATGATGATG+AGG | 0.640848 | 3_1:+29139501 | Msa0355260:CDS |
| GCCTTACAATCATAGAAAGG+AGG | 0.644238 | 3_1:-29140267 | None:intergenic |
| GATCGACCATATCGACTCCA+GGG | 0.646501 | 3_1:-29139312 | None:intergenic |
| TCCTCACAATGTCTTACATG+AGG | 0.647592 | 3_1:-29140321 | None:intergenic |
| CCAAAAGAACACGATTTGTG+AGG | 0.650604 | 3_1:-29139285 | None:intergenic |
| AACTACGTACTTACAGTCTG+GGG | 0.654367 | 3_1:-29139197 | None:intergenic |
| TGTTGAGAGGGAAATCAGGA+GGG | 0.662386 | 3_1:-29139372 | None:intergenic |
| TACGTCGCACAGGGGCTCGG+AGG | 0.665321 | 3_1:+29140150 | Msa0355260:CDS |
| TGTTTACCAACCAAGCCATG+AGG | 0.669655 | 3_1:+29140020 | Msa0355260:CDS |
| GAGAGAAGCGAATAAGCGAG+TGG | 0.671149 | 3_1:-29136927 | None:intergenic |
| AAAGGAGGAGCATGAAAACA+CGG | 0.681859 | 3_1:-29140252 | None:intergenic |
| GACATTGCACGTCGACAAGG+AGG | 0.696138 | 3_1:-29140222 | None:intergenic |
| TGAGCTAGTCACCAACACAT+CGG | 0.705484 | 3_1:-29140112 | None:intergenic |
| CTTTCGGCTACGTCGCACAG+GGG | 0.764738 | 3_1:+29140142 | Msa0355260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAATGCACTTTTTAATT+TGG | + | chr3_1:29137100-29137119 | Msa0355260:intron | 15.0% |
| !!! | TAATATTTTTAAGTTCTGTT+TGG | + | chr3_1:29137441-29137460 | Msa0355260:intron | 15.0% |
| !!! | TTTTTTTCAATTAAAATTGC+AGG | + | chr3_1:29137923-29137942 | Msa0355260:intron | 15.0% |
| !!! | TTTTTTCAATTAAAATTGCA+GGG | + | chr3_1:29137924-29137943 | Msa0355260:intron | 15.0% |
| !!! | AACTATTTGATTGTTTTTTA+TGG | + | chr3_1:29138493-29138512 | Msa0355260:intron | 15.0% |
| !! | TTCTATTTGATAAATAGTTA+AGG | + | chr3_1:29138625-29138644 | Msa0355260:intron | 15.0% |
| !! | ATAACAAAGTTCTTAAAAAA+TGG | + | chr3_1:29138709-29138728 | Msa0355260:intron | 15.0% |
| !! | TTTCATATTATTTGGTTATT+AGG | + | chr3_1:29138923-29138942 | Msa0355260:intron | 15.0% |
| !! | ATGTAACGTTTAATTCAATT+TGG | + | chr3_1:29137387-29137406 | Msa0355260:intron | 20.0% |
| !! | ATATGATCTAATAACGTAAA+AGG | - | chr3_1:29137419-29137438 | None:intergenic | 20.0% |
| !!! | ATAATCCGCTATATATTTTA+CGG | - | chr3_1:29137752-29137771 | None:intergenic | 20.0% |
| !!! | TTTTTCAATTAAAATTGCAG+GGG | + | chr3_1:29137925-29137944 | Msa0355260:intron | 20.0% |
| !! | AGTTACTTGAATTAACTTAT+CGG | + | chr3_1:29137992-29138011 | Msa0355260:intron | 20.0% |
| !!! | TATAACTAAAAAGACTTGTT+TGG | - | chr3_1:29138073-29138092 | None:intergenic | 20.0% |
| !! | AGATCCTTAATGTATTATAA+GGG | + | chr3_1:29138135-29138154 | Msa0355260:intron | 20.0% |
| !!! | GCATATATAAAGTGATTTTT+GGG | - | chr3_1:29138248-29138267 | None:intergenic | 20.0% |
| !!! | TGCATATATAAAGTGATTTT+TGG | - | chr3_1:29138249-29138268 | None:intergenic | 20.0% |
| !! | CAAAAAATTAAACTTGGATT+TGG | - | chr3_1:29138348-29138367 | None:intergenic | 20.0% |
| !!! | CAAATCCAAGTTTAATTTTT+TGG | + | chr3_1:29138346-29138365 | Msa0355260:intron | 20.0% |
| !! | CATTTCCAAAAAATTAAACT+TGG | - | chr3_1:29138354-29138373 | None:intergenic | 20.0% |
| !!! | AGTTTAATTTTTTGGAAATG+TGG | + | chr3_1:29138354-29138373 | Msa0355260:intron | 20.0% |
| !!! | GTTTAATTTTTTGGAAATGT+GGG | + | chr3_1:29138355-29138374 | Msa0355260:intron | 20.0% |
| !! | CATAGAAAAAAGAAATATCA+AGG | - | chr3_1:29138595-29138614 | None:intergenic | 20.0% |
| !!! | CTTGATATTTCTTTTTTCTA+TGG | + | chr3_1:29138593-29138612 | Msa0355260:intron | 20.0% |
| !!! | ATTTTCAAAATCAAGATTCA+AGG | - | chr3_1:29138677-29138696 | None:intergenic | 20.0% |
| !! | AACCAATAAATGCATAAAAT+AGG | - | chr3_1:29138850-29138869 | None:intergenic | 20.0% |
| !! | TGATAGAGTTTCATATTATT+TGG | + | chr3_1:29138915-29138934 | Msa0355260:intron | 20.0% |
| !!! | ATCTTTTACTGTTTTATTGT+AGG | - | chr3_1:29139152-29139171 | None:intergenic | 20.0% |
| !! | TAGTTATTGAAGTTATGAAT+TGG | + | chr3_1:29140383-29140402 | Msa0355260:exon | 20.0% |
| ! | AGTGCATTATATTAATGAAG+AGG | - | chr3_1:29137092-29137111 | None:intergenic | 25.0% |
| ! | TTACAATTTATCTGCATTCA+GGG | - | chr3_1:29137527-29137546 | None:intergenic | 25.0% |
| ! | TTTACAATTTATCTGCATTC+AGG | - | chr3_1:29137528-29137547 | None:intergenic | 25.0% |
| !! | TAATCCGCTATATATTTTAC+GGG | - | chr3_1:29137751-29137770 | None:intergenic | 25.0% |
| ! | GTAGTGTTTGATTAAATTAG+CGG | + | chr3_1:29137842-29137861 | Msa0355260:intron | 25.0% |
| ! | TAATACATTAAGGATCTGTT+TGG | - | chr3_1:29138132-29138151 | None:intergenic | 25.0% |
| ! | CAGATCCTTAATGTATTATA+AGG | + | chr3_1:29138134-29138153 | Msa0355260:intron | 25.0% |
| ! | CAAACCCTTATAATACATTA+AGG | - | chr3_1:29138142-29138161 | None:intergenic | 25.0% |
| !!! | TATATAAAGTGATTTTTGGG+TGG | - | chr3_1:29138245-29138264 | None:intergenic | 25.0% |
| ! | ACTTTATATATGCACACATT+TGG | + | chr3_1:29138255-29138274 | Msa0355260:intron | 25.0% |
| !! | AGTGTTTGAAATTACAATTC+CGG | + | chr3_1:29138294-29138313 | Msa0355260:intron | 25.0% |
| ! | TTAGTTAAGATTGAATCAAC+CGG | - | chr3_1:29138451-29138470 | None:intergenic | 25.0% |
| !! | TTTTTATGGTTTTCTGACAT+TGG | + | chr3_1:29138507-29138526 | Msa0355260:intron | 25.0% |
| ! | TTAAAAAATGGACAATAGAG+AGG | + | chr3_1:29138721-29138740 | Msa0355260:intron | 25.0% |
| ! | TAAAAAATGGACAATAGAGA+GGG | + | chr3_1:29138722-29138741 | Msa0355260:intron | 25.0% |
| !! | ATCTTTTTGGATACTTGAAT+AGG | + | chr3_1:29138767-29138786 | Msa0355260:intron | 25.0% |
| !! | GTCCTATTTTATGCATTTAT+TGG | + | chr3_1:29138845-29138864 | Msa0355260:intron | 25.0% |
| !!! | TGCATTTATTGGTTTTCTAT+TGG | + | chr3_1:29138856-29138875 | Msa0355260:intron | 25.0% |
| !! | TTTCTCATTTGCATAACTTT+TGG | + | chr3_1:29138884-29138903 | Msa0355260:intron | 25.0% |
| !!! | TACTGTTTTATTGTAGGATT+CGG | - | chr3_1:29139146-29139165 | None:intergenic | 25.0% |
| !! | AAAAAATTTGAAGTCGAAAG+CGG | + | chr3_1:29139909-29139928 | Msa0355260:CDS | 25.0% |
| ! | AAAAAGTAAGAGACATGTAT+TGG | + | chr3_1:29139965-29139984 | Msa0355260:CDS | 25.0% |
| ! | AAAAGTAAGAGACATGTATT+GGG | + | chr3_1:29139966-29139985 | Msa0355260:CDS | 25.0% |
| ! | AAATACACAATCAAAAAGCT+TGG | + | chr3_1:29140064-29140083 | Msa0355260:CDS | 25.0% |
| ! | AATACACAATCAAAAAGCTT+GGG | + | chr3_1:29140065-29140084 | Msa0355260:CDS | 25.0% |
| TGAAAACAGGAACATTTCTA+TGG | - | chr3_1:29136904-29136923 | None:intergenic | 30.0% | |
| CTCAAACAAAATCAACAACT+AGG | + | chr3_1:29137043-29137062 | Msa0355260:CDS | 30.0% | |
| ATGAAACACAAATACTCTCT+CGG | - | chr3_1:29137258-29137277 | None:intergenic | 30.0% | |
| !! | AGAGAGTATTTGTGTTTCAT+AGG | + | chr3_1:29137258-29137277 | Msa0355260:intron | 30.0% |
| GTATTTGTGTTTCATAGGAT+TGG | + | chr3_1:29137263-29137282 | Msa0355260:intron | 30.0% | |
| AGTTCTGTTTGGTACAATAT+AGG | + | chr3_1:29137452-29137471 | Msa0355260:intron | 30.0% | |
| GTTCTGTTTGGTACAATATA+GGG | + | chr3_1:29137453-29137472 | Msa0355260:intron | 30.0% | |
| TTCTGTTTGGTACAATATAG+GGG | + | chr3_1:29137454-29137473 | Msa0355260:intron | 30.0% | |
| ACTAACAAAGTCTACATTCA+GGG | - | chr3_1:29137556-29137575 | None:intergenic | 30.0% | |
| TTTGCAATTTCTCTTCATTC+AGG | + | chr3_1:29137676-29137695 | Msa0355260:intron | 30.0% | |
| TTGCAATTTCTCTTCATTCA+GGG | + | chr3_1:29137677-29137696 | Msa0355260:intron | 30.0% | |
| ATTCCCCGTAAAATATATAG+CGG | + | chr3_1:29137744-29137763 | Msa0355260:intron | 30.0% | |
| ! | AATCCGCTATATATTTTACG+GGG | - | chr3_1:29137750-29137769 | None:intergenic | 30.0% |
| TTTCAAACACTTAGAAGTTG+TGG | - | chr3_1:29138285-29138304 | None:intergenic | 30.0% | |
| !!! | TAATTTTTTGGAAATGTGGG+TGG | + | chr3_1:29138358-29138377 | Msa0355260:intron | 30.0% |
| ATCAAATAGTTGAGCTGATA+TGG | - | chr3_1:29138484-29138503 | None:intergenic | 30.0% | |
| ATCCAAAAAGATAGTCTACA+TGG | - | chr3_1:29138759-29138778 | None:intergenic | 30.0% | |
| AAAACTAACATCCCAATTCA+GGG | - | chr3_1:29138794-29138813 | None:intergenic | 30.0% | |
| AAAAACTAACATCCCAATTC+AGG | - | chr3_1:29138795-29138814 | None:intergenic | 30.0% | |
| TTCCCAAAAGATAAACTACT+TGG | + | chr3_1:29138977-29138996 | Msa0355260:CDS | 30.0% | |
| ! | CACCAAGTAGTTTATCTTTT+GGG | - | chr3_1:29138982-29139001 | None:intergenic | 30.0% |
| ATTCAGTTAAAGGACTATCA+GGG | + | chr3_1:29139050-29139069 | Msa0355260:CDS | 30.0% | |
| ATCTTCGTAATCTTGAAATG+AGG | - | chr3_1:29139090-29139109 | None:intergenic | 30.0% | |
| ! | TTATTGTAGGATTCGGTATA+AGG | - | chr3_1:29139139-29139158 | None:intergenic | 30.0% |
| ACAGTAAAAGATCTCAATTC+TGG | + | chr3_1:29139160-29139179 | Msa0355260:CDS | 30.0% | |
| GTAGTTTGGATTTCATTTAG+CGG | + | chr3_1:29139214-29139233 | Msa0355260:CDS | 30.0% | |
| TAAGAAATTGACTGTTGAGA+GGG | - | chr3_1:29139387-29139406 | None:intergenic | 30.0% | |
| ! | TCTGTTTTCATCATTAACCA+AGG | - | chr3_1:29139574-29139593 | None:intergenic | 30.0% |
| ! | GACAAAGTTTTCCATTTCTT+AGG | + | chr3_1:29139667-29139686 | Msa0355260:CDS | 30.0% |
| TGATCAAACACATGTTGAAA+TGG | - | chr3_1:29139817-29139836 | None:intergenic | 30.0% | |
| !! | AATCTTAGCTTGTACTTTGA+AGG | + | chr3_1:29139837-29139856 | Msa0355260:CDS | 30.0% |
| ! | GACAAGAAGCATGATAATAT+TGG | + | chr3_1:29139880-29139899 | Msa0355260:CDS | 30.0% |
| TTCGAAATAACCAGAGTTTA+AGG | - | chr3_1:29139947-29139966 | None:intergenic | 30.0% | |
| !! | TTAGCCTTACAATCATAGAA+AGG | - | chr3_1:29140273-29140292 | None:intergenic | 30.0% |
| !! | ACCACTAGTTATTTTGCTTT+AGG | + | chr3_1:29140408-29140427 | Msa0355260:three_prime_UTR | 30.0% |
| TCCTAAAGCAAAATAACTAG+TGG | - | chr3_1:29140412-29140431 | None:intergenic | 30.0% | |
| ! | AGATGAAGAAGACTAGTTGT+AGG | - | chr3_1:29137025-29137044 | None:intergenic | 35.0% |
| TTGTGTTTCATAGGATTGGA+TGG | + | chr3_1:29137267-29137286 | Msa0355260:intron | 35.0% | |
| GACTAACAAAGTCTACATTC+AGG | - | chr3_1:29137557-29137576 | None:intergenic | 35.0% | |
| ACTAACGAAGTTTGCATTCA+GGG | - | chr3_1:29137588-29137607 | None:intergenic | 35.0% | |
| ! | CGGATTATATGCTAGCTTAT+AGG | + | chr3_1:29137764-29137783 | Msa0355260:intron | 35.0% |
| !! | ATAGCTGATAGTGGATAAAC+TGG | + | chr3_1:29137807-29137826 | Msa0355260:intron | 35.0% |
| TTTCTCCCTTTACTATCTCT+TGG | - | chr3_1:29138217-29138236 | None:intergenic | 35.0% | |
| TCCATATGGCATGATTTATC+CGG | - | chr3_1:29138316-29138335 | None:intergenic | 35.0% | |
| ! | TTTGGAAGTGTACTTCCATA+TGG | - | chr3_1:29138330-29138349 | None:intergenic | 35.0% |
| TTGACTAGACTATTGCTTAC+AGG | - | chr3_1:29138395-29138414 | None:intergenic | 35.0% | |
| AGCAATAGTCTAGTCAAAGA+TGG | + | chr3_1:29138398-29138417 | Msa0355260:intron | 35.0% | |
| ! | GACCATGTAGACTATCTTTT+TGG | + | chr3_1:29138754-29138773 | Msa0355260:intron | 35.0% |
| TACTTGTTTACATGCTCTGT+TGG | + | chr3_1:29138821-29138840 | Msa0355260:intron | 35.0% | |
| ! | CCACCAAGTAGTTTATCTTT+TGG | - | chr3_1:29138983-29139002 | None:intergenic | 35.0% |
| CCAAAAGATAAACTACTTGG+TGG | + | chr3_1:29138980-29138999 | Msa0355260:CDS | 35.0% | |
| GTCCTTTAACTGAATGATAC+CGG | - | chr3_1:29139045-29139064 | None:intergenic | 35.0% | |
| CATTCAGTTAAAGGACTATC+AGG | + | chr3_1:29139049-29139068 | Msa0355260:CDS | 35.0% | |
| CGTAATCTTGAAATGAGGTA+AGG | - | chr3_1:29139085-29139104 | None:intergenic | 35.0% | |
| !!! | TATAAGGTCCGCATTTTTTG+TGG | - | chr3_1:29139123-29139142 | None:intergenic | 35.0% |
| AAACTACGTACTTACAGTCT+GGG | - | chr3_1:29139201-29139220 | None:intergenic | 35.0% | |
| TGGATTTCATTTAGCGGTTT+AGG | + | chr3_1:29139220-29139239 | Msa0355260:CDS | 35.0% | |
| GGATTTCATTTAGCGGTTTA+GGG | + | chr3_1:29139221-29139240 | Msa0355260:CDS | 35.0% | |
| ATACAGAAATGCAGAAGCTA+AGG | - | chr3_1:29139260-29139279 | None:intergenic | 35.0% | |
| CTAAGAAATTGACTGTTGAG+AGG | - | chr3_1:29139388-29139407 | None:intergenic | 35.0% | |
| AAATGAAGGTAGACAGAAGA+AGG | - | chr3_1:29139481-29139500 | None:intergenic | 35.0% | |
| TTCTTCTGTCTACCTTCATT+TGG | + | chr3_1:29139480-29139499 | Msa0355260:CDS | 35.0% | |
| CATAATCATGCACCAAATGA+AGG | - | chr3_1:29139495-29139514 | None:intergenic | 35.0% | |
| AATTTCTGCAGAAAGTTCCT+TGG | + | chr3_1:29139554-29139573 | Msa0355260:CDS | 35.0% | |
| ACAGCATCAAGAATAACGAT+GGG | - | chr3_1:29139609-29139628 | None:intergenic | 35.0% | |
| CAGTAATCTCTTTCCAAACA+AGG | + | chr3_1:29139645-29139664 | Msa0355260:CDS | 35.0% | |
| TGGAAAACTTTGTCCTTGTT+TGG | - | chr3_1:29139661-29139680 | None:intergenic | 35.0% | |
| ! | AAGTTTTCCATTTCTTAGGC+AGG | + | chr3_1:29139671-29139690 | Msa0355260:CDS | 35.0% |
| ACAAATACCTGCCTAAGAAA+TGG | - | chr3_1:29139681-29139700 | None:intergenic | 35.0% | |
| TTCACCCTACAAACAAAGTT+TGG | + | chr3_1:29139701-29139720 | Msa0355260:CDS | 35.0% | |
| TCACCCTACAAACAAAGTTT+GGG | + | chr3_1:29139702-29139721 | Msa0355260:CDS | 35.0% | |
| ! | ATCCCCAAACTTTGTTTGTA+GGG | - | chr3_1:29139708-29139727 | None:intergenic | 35.0% |
| ! | AATCCCCAAACTTTGTTTGT+AGG | - | chr3_1:29139709-29139728 | None:intergenic | 35.0% |
| AAACACATGTTGAAATGGAC+CGG | - | chr3_1:29139812-29139831 | None:intergenic | 35.0% | |
| CTAATGACATCCTTAAACTC+TGG | + | chr3_1:29139934-29139953 | Msa0355260:CDS | 35.0% | |
| GTAAACACCAATAACTTCTC+CGG | - | chr3_1:29140007-29140026 | None:intergenic | 35.0% | |
| ATTGAGTTTAACCGATGTGT+TGG | + | chr3_1:29140101-29140120 | Msa0355260:CDS | 35.0% | |
| TCAGGTTTGTATAGTATCCA+AGG | - | chr3_1:29140183-29140202 | None:intergenic | 35.0% | |
| TCCTCCTTTCTATGATTGTA+AGG | + | chr3_1:29140266-29140285 | Msa0355260:CDS | 35.0% | |
| TATGATTGTAAGGCTAAGAG+AGG | + | chr3_1:29140276-29140295 | Msa0355260:CDS | 35.0% | |
| ACATTGTGAGGATATGAGTT+GGG | + | chr3_1:29140332-29140351 | Msa0355260:CDS | 35.0% | |
| TGGAGAAGATGGAAGAATGA+AGG | - | chr3_1:29136984-29137003 | None:intergenic | 40.0% | |
| !! | GTTGATGATGATGGAGAAGA+TGG | - | chr3_1:29136995-29137014 | None:intergenic | 40.0% |
| !! | GGAGTTGTAGTTGATGATGA+TGG | - | chr3_1:29137004-29137023 | None:intergenic | 40.0% |
| ! | CCTAATATGAAACACCGACT+CGG | + | chr3_1:29137150-29137169 | Msa0355260:intron | 40.0% |
| CACAAATACTCTCTCGGATT+AGG | - | chr3_1:29137252-29137271 | None:intergenic | 40.0% | |
| ! | AGTCACTTTAGTCCCTGAAT+CGG | + | chr3_1:29137481-29137500 | Msa0355260:intron | 40.0% |
| GACTAATTCCTTCCGATTCA+GGG | - | chr3_1:29137496-29137515 | None:intergenic | 40.0% | |
| TGACTAATTCCTTCCGATTC+AGG | - | chr3_1:29137497-29137516 | None:intergenic | 40.0% | |
| GACTAACGAAGTTTGCATTC+AGG | - | chr3_1:29137589-29137608 | None:intergenic | 40.0% | |
| ACTAACGGAGTCTACATTCA+GGG | - | chr3_1:29137620-29137639 | None:intergenic | 40.0% | |
| TCAGGGACTAAAGTGACTAA+CGG | - | chr3_1:29137725-29137744 | None:intergenic | 40.0% | |
| TCATTCAGGGACTAAAGTGA+CGG | + | chr3_1:29137690-29137709 | Msa0355260:intron | 40.0% | |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | - | chr3_1:29137481-29137500 | None:intergenic | 40.0% |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | - | chr3_1:29137480-29137499 | None:intergenic | 40.0% |
| ! | AGCTAGCTTATAGCTGATAG+TGG | + | chr3_1:29137798-29137817 | Msa0355260:intron | 40.0% |
| TCTTAACCCTCTCTTTGTCA+CGG | + | chr3_1:29138176-29138195 | Msa0355260:intron | 40.0% | |
| TTCGGCCAAGAGATAGTAAA+GGG | + | chr3_1:29138209-29138228 | Msa0355260:intron | 40.0% | |
| TCCGGATAAATCATGCCATA+TGG | + | chr3_1:29138312-29138331 | Msa0355260:intron | 40.0% | |
| !!! | TTTTTTGGAAATGTGGGTGG+AGG | + | chr3_1:29138361-29138380 | Msa0355260:intron | 40.0% |
| AGTCAAAGATGGTTTCAGTC+AGG | + | chr3_1:29138409-29138428 | Msa0355260:intron | 40.0% | |
| !! | TGGTTTTCTGACATTGGCTA+AGG | + | chr3_1:29138513-29138532 | Msa0355260:intron | 40.0% |
| ACTTGAATAGGTCCCTGAAT+TGG | + | chr3_1:29138779-29138798 | Msa0355260:intron | 40.0% | |
| CTTGAATAGGTCCCTGAATT+GGG | + | chr3_1:29138780-29138799 | Msa0355260:intron | 40.0% | |
| !! | TGGGAACTCTTTAGAATCAG+AGG | - | chr3_1:29138963-29138982 | None:intergenic | 40.0% |
| AGCCGGTATCATTCAGTTAA+AGG | + | chr3_1:29139040-29139059 | Msa0355260:CDS | 40.0% | |
| CTTGAAATGAGGTAAGGAGA+TGG | - | chr3_1:29139079-29139098 | None:intergenic | 40.0% | |
| GAAGCTCTCCACAAAAAATG+CGG | + | chr3_1:29139112-29139131 | Msa0355260:CDS | 40.0% | |
| AACTACGTACTTACAGTCTG+GGG | - | chr3_1:29139200-29139219 | None:intergenic | 40.0% | |
| CAAACTACGTACTTACAGTC+TGG | - | chr3_1:29139202-29139221 | None:intergenic | 40.0% | |
| CAGACTGTAAGTACGTAGTT+TGG | + | chr3_1:29139200-29139219 | Msa0355260:CDS | 40.0% | |
| CCAAAAGAACACGATTTGTG+AGG | - | chr3_1:29139288-29139307 | None:intergenic | 40.0% | |
| ! | CCTCACAAATCGTGTTCTTT+TGG | + | chr3_1:29139285-29139304 | Msa0355260:CDS | 40.0% |
| CAGAAATCTGATCACTGTCA+TGG | + | chr3_1:29139415-29139434 | Msa0355260:CDS | 40.0% | |
| !! | GTAGACAGAAGAAGGTACTT+TGG | - | chr3_1:29139473-29139492 | None:intergenic | 40.0% |
| ! | GGTGCATGATTATGATGATG+AGG | + | chr3_1:29139501-29139520 | Msa0355260:CDS | 40.0% |
| GACAGCATCAAGAATAACGA+TGG | - | chr3_1:29139610-29139629 | None:intergenic | 40.0% | |
| ! | CTTGATGCTGTCTTTTGATC+AGG | + | chr3_1:29139618-29139637 | Msa0355260:CDS | 40.0% |
| CACCCTACAAACAAAGTTTG+GGG | + | chr3_1:29139703-29139722 | Msa0355260:CDS | 40.0% | |
| AACACATGTTGAAATGGACC+GGG | - | chr3_1:29139811-29139830 | None:intergenic | 40.0% | |
| TCATGCTTCTTGTCAACATC+AGG | - | chr3_1:29139874-29139893 | None:intergenic | 40.0% | |
| !! | CAGTTTGTTGATATCCCTCA+TGG | - | chr3_1:29140038-29140057 | None:intergenic | 40.0% |
| ACTAGCTCATGGTCTACTTT+CGG | + | chr3_1:29140126-29140145 | Msa0355260:CDS | 40.0% | |
| ! | AAAGGAGGAGCATGAAAACA+CGG | - | chr3_1:29140255-29140274 | None:intergenic | 40.0% |
| GCCTTACAATCATAGAAAGG+AGG | - | chr3_1:29140270-29140289 | None:intergenic | 40.0% | |
| TCCTCATGTAAGACATTGTG+AGG | + | chr3_1:29140320-29140339 | Msa0355260:CDS | 40.0% | |
| TCCTCACAATGTCTTACATG+AGG | - | chr3_1:29140324-29140343 | None:intergenic | 40.0% | |
| GACATTGTGAGGATATGAGT+TGG | + | chr3_1:29140331-29140350 | Msa0355260:CDS | 40.0% | |
| CATTGTGAGGATATGAGTTG+GGG | + | chr3_1:29140333-29140352 | Msa0355260:CDS | 40.0% | |
| AAGCGAGTGGAAGTGAAAAC+AGG | - | chr3_1:29136917-29136936 | None:intergenic | 45.0% | |
| ! | CCGAGTCGGTGTTTCATATT+AGG | - | chr3_1:29137153-29137172 | None:intergenic | 45.0% |
| ACTTTAGTCCCTGAATCGGA+AGG | + | chr3_1:29137485-29137504 | Msa0355260:intron | 45.0% | |
| GACTAACGGAGTCTACATTC+AGG | - | chr3_1:29137621-29137640 | None:intergenic | 45.0% | |
| TCCCTGAAATTGACCATGCA+GGG | + | chr3_1:29137648-29137667 | Msa0355260:intron | 45.0% | |
| TCCCTGCATGGTCAATTTCA+GGG | - | chr3_1:29137652-29137671 | None:intergenic | 45.0% | |
| ATTGCAAAACAGTCCCTGCA+TGG | - | chr3_1:29137664-29137683 | None:intergenic | 45.0% | |
| TCACTACCGTGACAAAGAGA+GGG | - | chr3_1:29138185-29138204 | None:intergenic | 45.0% | |
| TTCACTACCGTGACAAAGAG+AGG | - | chr3_1:29138186-29138205 | None:intergenic | 45.0% | |
| TGTCACGGTAGTGAACAGTT+CGG | + | chr3_1:29138191-29138210 | Msa0355260:intron | 45.0% | |
| GTTCGGCCAAGAGATAGTAA+AGG | + | chr3_1:29138208-29138227 | Msa0355260:intron | 45.0% | |
| GTTTCAGTCAGGATCGAACT+CGG | + | chr3_1:29138420-29138439 | Msa0355260:intron | 45.0% | |
| ! | AGGATCGAACTCGGTTTTTC+CGG | + | chr3_1:29138429-29138448 | Msa0355260:intron | 45.0% |
| ATGATAGATCCTGTCTCAGC+CGG | + | chr3_1:29139023-29139042 | Msa0355260:CDS | 45.0% | |
| AGTCTGGGGACTCACTTAAA+TGG | - | chr3_1:29139186-29139205 | None:intergenic | 45.0% | |
| CATTTAGCGGTTTAGGGAAC+AGG | + | chr3_1:29139227-29139246 | Msa0355260:CDS | 45.0% | |
| ! | AACCAGGAGACATCTGGAAT+CGG | - | chr3_1:29139349-29139368 | None:intergenic | 45.0% |
| TGTTGAGAGGGAAATCAGGA+GGG | - | chr3_1:29139375-29139394 | None:intergenic | 45.0% | |
| TGACTGTTGAGAGGGAAATC+AGG | - | chr3_1:29139379-29139398 | None:intergenic | 45.0% | |
| ! | GCCAACGTTGATGAAAGAGT+CGG | + | chr3_1:29139757-29139776 | Msa0355260:CDS | 45.0% |
| AAAGAGTCGGCATCCAGATT+AGG | + | chr3_1:29139770-29139789 | Msa0355260:CDS | 45.0% | |
| AAGAGTCGGCATCCAGATTA+GGG | + | chr3_1:29139771-29139790 | Msa0355260:CDS | 45.0% | |
| TCGTGTCGAAAACCCTAATC+TGG | - | chr3_1:29139786-29139805 | None:intergenic | 45.0% | |
| TGGGAATATCCAACTGTGAC+CGG | + | chr3_1:29139985-29140004 | Msa0355260:CDS | 45.0% | |
| ATAACTTCTCCGGTCACAGT+TGG | - | chr3_1:29139997-29140016 | None:intergenic | 45.0% | |
| ACTGTGACCGGAGAAGTTAT+TGG | + | chr3_1:29139997-29140016 | Msa0355260:CDS | 45.0% | |
| TGTTTACCAACCAAGCCATG+AGG | + | chr3_1:29140020-29140039 | Msa0355260:CDS | 45.0% | |
| GTTTACCAACCAAGCCATGA+GGG | + | chr3_1:29140021-29140040 | Msa0355260:CDS | 45.0% | |
| TGTTGATATCCCTCATGGCT+TGG | - | chr3_1:29140033-29140052 | None:intergenic | 45.0% | |
| TGAGCTAGTCACCAACACAT+CGG | - | chr3_1:29140115-29140134 | None:intergenic | 45.0% | |
| !! | ATGTGTTGGTGACTAGCTCA+TGG | + | chr3_1:29140115-29140134 | Msa0355260:CDS | 45.0% |
| ATTGACATTGCACGTCGACA+AGG | - | chr3_1:29140228-29140247 | None:intergenic | 45.0% | |
| TTGTCGACGTGCAATGTCAA+TGG | + | chr3_1:29140227-29140246 | Msa0355260:CDS | 45.0% | |
| ! | GGATATGAGTTGGGGTCTTA+AGG | + | chr3_1:29140341-29140360 | Msa0355260:CDS | 45.0% |
| GAGAGAAGCGAATAAGCGAG+TGG | - | chr3_1:29136930-29136949 | None:intergenic | 50.0% | |
| ATCAGTGTCTGTGTCCGAGT+CGG | - | chr3_1:29137167-29137186 | None:intergenic | 50.0% | |
| GTCCCTGAAATTGACCATGC+AGG | + | chr3_1:29137647-29137666 | Msa0355260:intron | 50.0% | |
| GTCCCTGCATGGTCAATTTC+AGG | - | chr3_1:29137653-29137672 | None:intergenic | 50.0% | |
| CTTTAGTCCCTGAATGGGAG+AGG | - | chr3_1:29137718-29137737 | None:intergenic | 50.0% | |
| !! | CTTGGTGGACTTCTAGCATC+TGG | + | chr3_1:29138995-29139014 | Msa0355260:CDS | 50.0% |
| ! | TGAATGATACCGGCTGAGAC+AGG | - | chr3_1:29139035-29139054 | None:intergenic | 50.0% |
| !! | CGTGTTCTTTTGGTTGACCC+TGG | + | chr3_1:29139295-29139314 | Msa0355260:CDS | 50.0% |
| !! | GATCGACCATATCGACTCCA+GGG | - | chr3_1:29139315-29139334 | None:intergenic | 50.0% |
| !! | AGATCGACCATATCGACTCC+AGG | - | chr3_1:29139316-29139335 | None:intergenic | 50.0% |
| ! | AACCGATTCCAGATGTCTCC+TGG | + | chr3_1:29139344-29139363 | Msa0355260:CDS | 50.0% |
| GAAATCAGGAGGGAGAAACC+AGG | - | chr3_1:29139365-29139384 | None:intergenic | 50.0% | |
| CTGTTGAGAGGGAAATCAGG+AGG | - | chr3_1:29139376-29139395 | None:intergenic | 50.0% | |
| ! | GCCGACTCTTTCATCAACGT+TGG | - | chr3_1:29139761-29139780 | None:intergenic | 50.0% |
| !! | GATATCCCTCATGGCTTGGT+TGG | - | chr3_1:29140029-29140048 | None:intergenic | 50.0% |
| TCAGGAGCAGTTTCGTTCTC+AGG | - | chr3_1:29140201-29140220 | None:intergenic | 50.0% | |
| ! | TGACGGATCCTCTCCCATTC+AGG | + | chr3_1:29137707-29137726 | Msa0355260:intron | 55.0% |
| GACGGATCCTCTCCCATTCA+GGG | + | chr3_1:29137708-29137727 | Msa0355260:intron | 55.0% | |
| GGTTGACCCTGGAGTCGATA+TGG | + | chr3_1:29139306-29139325 | Msa0355260:CDS | 55.0% | |
| GGGAGAAACCAGGAGACATC+TGG | - | chr3_1:29139355-29139374 | None:intergenic | 55.0% | |
| ! | AGGGTTTTCGACACGAGACC+CGG | + | chr3_1:29139790-29139809 | Msa0355260:CDS | 55.0% |
| TACTTTCGGCTACGTCGCAC+AGG | + | chr3_1:29140140-29140159 | Msa0355260:CDS | 55.0% | |
| ACTTTCGGCTACGTCGCACA+GGG | + | chr3_1:29140141-29140160 | Msa0355260:CDS | 55.0% | |
| ! | GGCTCGGAGGTTTGAAACCT+TGG | + | chr3_1:29140163-29140182 | Msa0355260:CDS | 55.0% |
| GACATTGCACGTCGACAAGG+AGG | - | chr3_1:29140225-29140244 | None:intergenic | 55.0% | |
| !! | GCTAAGAGAGGCACTGACAC+AGG | + | chr3_1:29140288-29140307 | Msa0355260:CDS | 55.0% |
| CTTTCGGCTACGTCGCACAG+GGG | + | chr3_1:29140142-29140161 | Msa0355260:CDS | 60.0% | |
| GCACGTCGACAAGGAGGATC+AGG | - | chr3_1:29140219-29140238 | None:intergenic | 60.0% | |
| GGCTACGTCGCACAGGGGCT+CGG | + | chr3_1:29140147-29140166 | Msa0355260:CDS | 70.0% | |
| TACGTCGCACAGGGGCTCGG+AGG | + | chr3_1:29140150-29140169 | Msa0355260:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 29136885 | 29140494 | 29136885 | ID=Msa0355260;Name=Msa0355260 |
| chr3_1 | mRNA | 29136885 | 29140494 | 29136885 | ID=Msa0355260-mRNA-1;Parent=Msa0355260;Name=Msa0355260-mRNA-1;_AED=0.01;_eAED=0.01;_QI=5|1|1|1|1|1|2|102|540 |
| chr3_1 | exon | 29136885 | 29137064 | 29136885 | ID=Msa0355260-mRNA-1:exon:6097;Parent=Msa0355260-mRNA-1 |
| chr3_1 | exon | 29138945 | 29140494 | 29138945 | ID=Msa0355260-mRNA-1:exon:6098;Parent=Msa0355260-mRNA-1 |
| chr3_1 | five_prime_UTR | 29136885 | 29136889 | 29136885 | ID=Msa0355260-mRNA-1:five_prime_utr;Parent=Msa0355260-mRNA-1 |
| chr3_1 | CDS | 29136890 | 29137064 | 29136890 | ID=Msa0355260-mRNA-1:cds;Parent=Msa0355260-mRNA-1 |
| chr3_1 | CDS | 29138945 | 29140392 | 29138945 | ID=Msa0355260-mRNA-1:cds;Parent=Msa0355260-mRNA-1 |
| chr3_1 | three_prime_UTR | 29140393 | 29140494 | 29140393 | ID=Msa0355260-mRNA-1:three_prime_utr;Parent=Msa0355260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
