AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0402890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0402890 MtrunA17_Chr3g0093291 96.508 315 10 1 1 315 1 314 0.0 618
Msa0402890 MtrunA17_Chr3g0093291 91.667 60 5 0 402 461 316 375 4.88e-26 109
Msa0402890 MtrunA17_Chr5g0441001 71.605 324 80 3 1 315 1 321 3.22e-167 476
Msa0402890 MtrunA17_Chr5g0441001 76.667 60 14 0 402 461 323 382 1.90e-22 98.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0402890 AT3G20320.1 66.667 324 95 3 1 315 1 320 5.57e-146 422
Msa0402890 AT3G20320.1 85.000 60 9 0 402 461 322 381 2.69e-25 107
Msa0402890 AT3G20320.3 64.336 286 89 3 1 277 1 282 1.41e-122 358
Msa0402890 AT3G20320.2 64.336 286 89 3 1 277 1 282 1.41e-122 358

Find 156 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCGACCATTAACTGATTT+TGG 0.114292 3_2:+31770990 Msa0402890:CDS
CTGAGCATATCCTTAATTTA+TGG 0.117408 3_2:+31774579 Msa0402890:three_prime_UTR
CTTCTTCTTGATGAATTTAT+TGG 0.132036 3_2:-31770837 None:intergenic
GTCCTACCTCAATGTTCTTC+AGG 0.224980 3_2:-31774166 None:intergenic
TAATTCTATTGCAGTGGTTT+TGG 0.246192 3_2:+31770938 Msa0402890:CDS
ACTTCAACCAACGAATTTCT+TGG 0.259268 3_2:-31771290 None:intergenic
ATTAGAAAGGGATTCTATTC+TGG 0.265330 3_2:+31772891 Msa0402890:intron
CCAATCAGAGAGTGTGATTT+AGG 0.276570 3_2:-31770555 None:intergenic
ACTACGCTTCATTCAAAATA+AGG 0.290814 3_2:-31774541 None:intergenic
GGTGAATATGAGAGAGTAAA+TGG 0.300560 3_2:-31774144 None:intergenic
GTGTGATAGAGAAAAGATTA+AGG 0.308390 3_2:+31771427 Msa0402890:CDS
TTGTTAAATAATAGTAATAA+TGG 0.309422 3_2:+31770746 Msa0402890:exon
CCAAATCCAAAATCAGTTAA+TGG 0.312281 3_2:-31770996 None:intergenic
TGGACATTCCCCGTGCCATT+TGG 0.313226 3_2:+31770958 Msa0402890:CDS
ACAAGTTAAACCATAAATTA+AGG 0.317207 3_2:-31774589 None:intergenic
TAACCAGTCAGGTCTTCTTA+TGG 0.321768 3_2:+31771313 Msa0402890:CDS
CAGTTAATGGTCGGATAGTT+CGG 0.321806 3_2:-31770983 None:intergenic
TGCTTGCAGCATCTAGATCT+TGG 0.321938 3_2:+31772597 Msa0402890:CDS
TGAGAGAGTAAATGGACTTC+TGG 0.323054 3_2:-31774136 None:intergenic
TGTTAATTAATATTAGAATA+GGG 0.323609 3_2:+31772564 Msa0402890:CDS
TGGATCAGTTCAGTGTTCTC+AGG 0.336084 3_2:-31774116 None:intergenic
TTCAAATACGATCCAAGTTC+AGG 0.340476 3_2:+31771108 Msa0402890:CDS
GCTTGCAGCATCTAGATCTT+GGG 0.343325 3_2:+31772598 Msa0402890:CDS
GATTTGGTGGTAGGACCATT+TGG 0.345153 3_2:+31771012 Msa0402890:CDS
GCATTATGTTCTACTTCAAT+TGG 0.346399 3_2:-31774380 None:intergenic
GGGTTACCAAGGGGTAAGTT+TGG 0.348380 3_2:+31771448 Msa0402890:CDS
ATGTTAATTAATATTAGAAT+AGG 0.349986 3_2:+31772563 Msa0402890:CDS
TGTCCTCCATCTGCAGAATT+AGG 0.355239 3_2:-31770876 None:intergenic
TGAAGATCTTCAACCTTTGT+TGG 0.369403 3_2:+31772388 Msa0402890:CDS
CACAAGCCTCTGATGATTTG+AGG 0.370311 3_2:+31772468 Msa0402890:CDS
CTAAGTTCTGGTATTTCCTA+TGG 0.371821 3_2:+31774484 Msa0402890:three_prime_UTR
GACCTTCTTTATGACATTCC+TGG 0.376939 3_2:-31771397 None:intergenic
GGGCGAGATGTAGAGAAAAT+TGG 0.395683 3_2:+31771500 Msa0402890:CDS
TATTGGAAGGGTTGTAATCA+TGG 0.397412 3_2:-31770820 None:intergenic
AGGTGAAACTGTGTATTTGC+AGG 0.403605 3_2:+31772999 Msa0402890:CDS
ACGTCTTCGATTTAAAATAT+AGG 0.407083 3_2:-31774670 None:intergenic
TTGGGATATTTACCCGTCTT+GGG 0.407743 3_2:+31771480 Msa0402890:CDS
CAGGCTTGTGGTATATCTAC+TGG 0.421293 3_2:+31771158 Msa0402890:CDS
ATTTGCAGGCCCAACCTTGT+AGG 0.424686 3_2:+31773013 Msa0402890:CDS
GTTGGGATATTTACCCGTCT+TGG 0.425089 3_2:+31771479 Msa0402890:CDS
CATCAAGAAGAAGTATAAAC+AGG 0.430962 3_2:+31770847 Msa0402890:CDS
CCTAAATCACACTCTCTGAT+TGG 0.434743 3_2:+31770555 Msa0402890:five_prime_UTR
CACTACTCACAAAGTTGAAT+CGG 0.435752 3_2:-31770719 None:intergenic
ATTTGGTGGTAGGACCATTT+GGG 0.436304 3_2:+31771013 Msa0402890:CDS
TAGGTGTTAACGTAGGTAAA+AGG 0.439237 3_2:-31774651 None:intergenic
TCATAGTCGATTCTAAGTTC+TGG 0.443414 3_2:+31774472 Msa0402890:three_prime_UTR
TTGGCTGATGTCCGTGATAG+TGG 0.446094 3_2:+31772407 Msa0402890:CDS
GGATCAGTTCAGTGTTCTCA+GGG 0.455512 3_2:-31774115 None:intergenic
TAAGTTTGGATGCATTGGTT+GGG 0.456549 3_2:+31771462 Msa0402890:CDS
TGCGGTATACTTCCTGAACT+TGG 0.458322 3_2:-31771120 None:intergenic
ACTTAGTTTAGCGTGGTTGA+AGG 0.462333 3_2:+31771082 Msa0402890:CDS
TTGGTTGAAGTTAACCAGTC+AGG 0.464065 3_2:+31771302 Msa0402890:CDS
GATACTTGAGCTGCTGGTAA+AGG 0.464822 3_2:-31770678 None:intergenic
AGGGGTAAGTTTGGATGCAT+TGG 0.467114 3_2:+31771457 Msa0402890:CDS
TTCGGCTGGTCCGCTTGACC+AGG 0.470194 3_2:+31771379 Msa0402890:CDS
TGTGATAGAGAAAAGATTAA+GGG 0.472428 3_2:+31771428 Msa0402890:CDS
CTCTACATCTCGCCCAAGAC+GGG 0.472927 3_2:-31771492 None:intergenic
AGACTTCATCCTACAAGGTT+GGG 0.474219 3_2:-31773022 None:intergenic
TCCTACCTCAATGTTCTTCA+GGG 0.479771 3_2:-31774165 None:intergenic
AATGATGAGATATGCAATGA+AGG 0.480956 3_2:-31770777 None:intergenic
TAAATAATAGTAATAATGGT+TGG 0.483450 3_2:+31770750 Msa0402890:exon
TGTAATCATGGATGAAGATA+AGG 0.484239 3_2:-31770808 None:intergenic
CATCACACCTTTGTAAGAAG+TGG 0.486944 3_2:-31771581 None:intergenic
TTCATCAACCACAACCTTGA+GGG 0.489402 3_2:+31774426 Msa0402890:three_prime_UTR
GGTAGGACCATTTGGGAAGG+TGG 0.490797 3_2:+31771020 Msa0402890:CDS
TGTTGCCAACAGTTATTCAT+TGG 0.493544 3_2:+31771523 Msa0402890:CDS
GTAAGTTTGGATGCATTGGT+TGG 0.499526 3_2:+31771461 Msa0402890:CDS
AACAGAATGGGGCATGGAGG+AGG 0.500633 3_2:-31770506 None:intergenic
TCCAACACCACCTTCCCAAA+TGG 0.501139 3_2:-31771027 None:intergenic
GTCTGGTGTCTGACATGTGC+TGG 0.501519 3_2:+31774693 Msa0402890:three_prime_UTR
AATCATACCAAGAAATTCGT+TGG 0.503094 3_2:+31771283 Msa0402890:CDS
AGATCCCATTCCAACACCTT+CGG 0.505106 3_2:+31771361 Msa0402890:CDS
GTTAATTAATATTAGAATAG+GGG 0.505963 3_2:+31772565 Msa0402890:CDS
CCAGCCGAAGGTGTTGGAAT+GGG 0.508212 3_2:-31771365 None:intergenic
ACCATTTGGGAAGGTGGTGT+TGG 0.510657 3_2:+31771026 Msa0402890:CDS
CCGTGTGTGTGCAACAGAAT+GGG 0.511361 3_2:-31770518 None:intergenic
ACCAGCCGAAGGTGTTGGAA+TGG 0.513068 3_2:-31771366 None:intergenic
GAGACTTCATCCTACAAGGT+TGG 0.514100 3_2:-31773023 None:intergenic
TGAAGAGATACTTGAGCTGC+TGG 0.522206 3_2:-31770684 None:intergenic
TACTAATCAAGTCTCTCAGC+AGG 0.524421 3_2:+31774339 Msa0402890:CDS
AATCATCAGAGGCTTGTGTA+AGG 0.524998 3_2:-31772463 None:intergenic
CTTAGTTTAGCGTGGTTGAA+GGG 0.526781 3_2:+31771083 Msa0402890:CDS
TCGGATAGTTCGGGTCCAAA+TGG 0.527376 3_2:-31770973 None:intergenic
TCCGTGTGTGTGCAACAGAA+TGG 0.528683 3_2:-31770519 None:intergenic
TCTTGATGAATTTATTGGAA+GGG 0.529697 3_2:-31770832 None:intergenic
AGGGAAGTCGAAGTTAGAGT+AGG 0.534099 3_2:+31772979 Msa0402890:CDS
AGTTAATGGTCGGATAGTTC+GGG 0.538129 3_2:-31770982 None:intergenic
CCCATTCCAACACCTTCGGC+TGG 0.538502 3_2:+31771365 Msa0402890:CDS
TTCTTGATGAATTTATTGGA+AGG 0.539160 3_2:-31770833 None:intergenic
AGCGGACCAGCCGAAGGTGT+TGG 0.540792 3_2:-31771371 None:intergenic
CCGTGATAGTGGCTTGTTGA+AGG 0.541286 3_2:+31772418 Msa0402890:CDS
AAAACAAAAGAGGGCCAACC+GGG 0.548860 3_2:-31770461 None:intergenic
CCCATTCTGTTGCACACACA+CGG 0.549537 3_2:+31770518 Msa0402890:five_prime_UTR
ATAAGACCTAATTCTGCAGA+TGG 0.553495 3_2:+31770870 Msa0402890:CDS
AGTTCGGGTCCAAATGGCAC+GGG 0.554374 3_2:-31770967 None:intergenic
GGAAAGTTAAATATTTATCA+CGG 0.555155 3_2:-31774520 None:intergenic
GAACGCCGGTGAGGATCAGA+GGG 0.557415 3_2:+31771180 Msa0402890:CDS
GAAGAATAATTCTATTGCAG+TGG 0.561053 3_2:+31770932 Msa0402890:CDS
ATGGATGAAGATAAGGAACT+AGG 0.561995 3_2:-31770801 None:intergenic
CATGTCAGTGTCGTACTGCT+TGG 0.562886 3_2:+31774783 Msa0402890:three_prime_UTR
CGGCAGAATGCAAGAACCAT+AGG 0.563787 3_2:-31774500 None:intergenic
CTTGCAGCATCTAGATCTTG+GGG 0.567792 3_2:+31772599 Msa0402890:CDS
GACCAGGAATGTCATAAAGA+AGG 0.568613 3_2:+31771395 Msa0402890:CDS
TGGTCAAGCGGACCAGCCGA+AGG 0.569435 3_2:-31771377 None:intergenic
TCATCAACCACAACCTTGAG+GGG 0.572559 3_2:+31774427 Msa0402890:three_prime_UTR
ATGCATCCAAACTTACCCCT+TGG 0.573447 3_2:-31771454 None:intergenic
ATCCAAAATCAGTTAATGGT+CGG 0.575229 3_2:-31770992 None:intergenic
ATGATGAGATATGCAATGAA+GGG 0.575761 3_2:-31770776 None:intergenic
GGAACGCCGGTGAGGATCAG+AGG 0.578249 3_2:+31771179 Msa0402890:CDS
GAAAAGATTAAGGGTTACCA+AGG 0.578824 3_2:+31771437 Msa0402890:CDS
TTATGACATTCCTGGTCAAG+CGG 0.579839 3_2:-31771389 None:intergenic
TTCAGCCAATGAATAACTGT+TGG 0.580371 3_2:-31771528 None:intergenic
TGGTATATCTACTGGAACGC+CGG 0.580404 3_2:+31771166 Msa0402890:CDS
TCTCTACATCTCGCCCAAGA+CGG 0.580799 3_2:-31771493 None:intergenic
GCAAGAGACTTCATCCTACA+AGG 0.584544 3_2:-31773027 None:intergenic
AAGTGCGAAAAGAAGAGCAC+CGG 0.586310 3_2:-31771063 None:intergenic
AGCCGCTCAAATGAAAAGCT+CGG 0.587008 3_2:+31773051 Msa0402890:CDS
CATCAACCACAACCTTGAGG+GGG 0.603138 3_2:+31774428 Msa0402890:three_prime_UTR
CAAATGAAAAGCTCGGTCAA+AGG 0.605454 3_2:+31773058 Msa0402890:CDS
TTTCATCAACCACAACCTTG+AGG 0.606172 3_2:+31774425 Msa0402890:three_prime_UTR
TAAAATATAGGTGTTAACGT+AGG 0.607659 3_2:-31774658 None:intergenic
AGCTAAACCACTTCTTACAA+AGG 0.607789 3_2:+31771574 Msa0402890:CDS
CTGAGAAAACTCAACTGTTG+CGG 0.609762 3_2:-31771138 None:intergenic
GGTGTTGGAATGGGATCTCG+AGG 0.611034 3_2:-31771356 None:intergenic
AGAAAGGGATTCTATTCTGG+AGG 0.615725 3_2:+31772894 Msa0402890:intron
AAAAGATTAAGGGTTACCAA+GGG 0.616488 3_2:+31771438 Msa0402890:CDS
AGACCTAATTCTGCAGATGG+AGG 0.617322 3_2:+31770873 Msa0402890:CDS
AGGATCAGAGGGGTGACTGT+CGG 0.623420 3_2:+31771191 Msa0402890:CDS
ATCAACCACAACCTTGAGGG+GGG 0.627298 3_2:+31774429 Msa0402890:three_prime_UTR
TCTCCATAAGAAGACCTGAC+TGG 0.628132 3_2:-31771316 None:intergenic
CCTTCAACAAGCCACTATCA+CGG 0.628722 3_2:-31772418 None:intergenic
GGTGGTAGGACCATTTGGGA+AGG 0.630327 3_2:+31771017 Msa0402890:CDS
GCTTCAATACTTCTTAACGA+AGG 0.631329 3_2:-31771233 None:intergenic
TAGTTCGGGTCCAAATGGCA+CGG 0.631375 3_2:-31770968 None:intergenic
TTTAGCTTCTTCAATAACAG+AGG 0.634755 3_2:-31771558 None:intergenic
GTCACCCCTCTGATCCTCAC+CGG 0.635631 3_2:-31771185 None:intergenic
TTAAGTGTAACAACATATGT+TGG 0.644816 3_2:-31774725 None:intergenic
TGTTGGAATGGGATCTCGAG+GGG 0.645401 3_2:-31771354 None:intergenic
CGTGTGTGTGCAACAGAATG+GGG 0.646394 3_2:-31770517 None:intergenic
GTGTGCAACAGAATGGGGCA+TGG 0.647779 3_2:-31770512 None:intergenic
AGGAAGTTGAGAATTTAACT+CGG 0.650327 3_2:+31772438 Msa0402890:CDS
AGGTTGAAGATCTTCAGCCA+TGG 0.653485 3_2:-31772381 None:intergenic
AATTAACCTCAAATCATCAG+AGG 0.655914 3_2:-31772474 None:intergenic
ATTCACCCTGAAGAACATTG+AGG 0.656518 3_2:+31774160 Msa0402890:CDS
TCTAGATGCTGCAAGCACAA+TGG 0.658997 3_2:-31772591 None:intergenic
CGACACTGACATGTAGACAA+AGG 0.661655 3_2:-31774773 None:intergenic
TATCTACTGGAACGCCGGTG+AGG 0.672873 3_2:+31771171 Msa0402890:CDS
GTGTTGGAATGGGATCTCGA+GGG 0.676861 3_2:-31771355 None:intergenic
TCACGGACATCAGCCAACAA+AGG 0.679820 3_2:-31772401 None:intergenic
GATGATTCTGAAGCAGACGA+CGG 0.684903 3_2:-31770909 None:intergenic
GATCAGTTCAGTGTTCTCAG+GGG 0.695950 3_2:-31774114 None:intergenic
TGCAACAGAATGGGGCATGG+AGG 0.696492 3_2:-31770509 None:intergenic
AAAGATTAAGGGTTACCAAG+GGG 0.699349 3_2:+31771439 Msa0402890:CDS
GTTCGGGTCCAAATGGCACG+GGG 0.707783 3_2:-31770966 None:intergenic
GATGTCTCAGATCAATGCCA+TGG 0.710763 3_2:+31772364 Msa0402890:intron
AACGCCGGTGAGGATCAGAG+GGG 0.788850 3_2:+31771181 Msa0402890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTTAAATAATAGTAATAA+TGG + chr3_2:31770746-31770765 Msa0402890:exon 10.0%
!! ATGTTAATTAATATTAGAAT+AGG + chr3_2:31772563-31772582 Msa0402890:CDS 10.0%
!! TGTTAATTAATATTAGAATA+GGG + chr3_2:31772564-31772583 Msa0402890:CDS 10.0%
!!! TAATAATAAGAATTTTGTTT+TGG + chr3_2:31774218-31774237 Msa0402890:intron 10.0%
!! TAAATAATAGTAATAATGGT+TGG + chr3_2:31770750-31770769 Msa0402890:exon 15.0%
!! GTTAATTAATATTAGAATAG+GGG + chr3_2:31772565-31772584 Msa0402890:CDS 15.0%
!! AATTGCTCATAAAATTTACA+TGG + chr3_2:31770637-31770656 Msa0402890:intron 20.0%
!!! AGCTCAATTTTCAAAATAAT+TGG - chr3_2:31771862-31771881 None:intergenic 20.0%
!! ATTTGAAAACAGAGAAATAA+TGG - chr3_2:31773455-31773474 None:intergenic 20.0%
!! TTCAATTATCTTCTGAATTA+AGG - chr3_2:31773947-31773966 None:intergenic 20.0%
!! GGAAAGTTAAATATTTATCA+CGG - chr3_2:31774523-31774542 None:intergenic 20.0%
!! ACAAGTTAAACCATAAATTA+AGG - chr3_2:31774592-31774611 None:intergenic 20.0%
!!! ACTTGTTTTTTTTTTTAGCA+TGG + chr3_2:31774606-31774625 Msa0402890:three_prime_UTR 20.0%
! TCTTGATGAATTTATTGGAA+GGG - chr3_2:31770835-31770854 None:intergenic 25.0%
! TTCTTGATGAATTTATTGGA+AGG - chr3_2:31770836-31770855 None:intergenic 25.0%
! CTTCTTCTTGATGAATTTAT+TGG - chr3_2:31770840-31770859 None:intergenic 25.0%
! TGTGATAGAGAAAAGATTAA+GGG + chr3_2:31771428-31771447 Msa0402890:CDS 25.0%
! ATATGTCAATAATCACATTC+AGG + chr3_2:31771912-31771931 Msa0402890:intron 25.0%
!! TACGAAAATAGGAATTTTTC+GGG - chr3_2:31771940-31771959 None:intergenic 25.0%
!! GTACGAAAATAGGAATTTTT+CGG - chr3_2:31771941-31771960 None:intergenic 25.0%
!! TAGCTTAAAAGTACGAAAAT+AGG - chr3_2:31771951-31771970 None:intergenic 25.0%
!! TTCGTACTTTTAAGCTATTA+TGG + chr3_2:31771954-31771973 Msa0402890:intron 25.0%
!!! TATCTTTAATTTGACATGCA+TGG + chr3_2:31772523-31772542 Msa0402890:intron 25.0%
! AAGTATAAATGTGCAATATG+TGG + chr3_2:31772858-31772877 Msa0402890:intron 25.0%
! AGGGGTAATATAATATAATG+TGG + chr3_2:31773293-31773312 Msa0402890:intron 25.0%
! GGGGTAATATAATATAATGT+GGG + chr3_2:31773294-31773313 Msa0402890:intron 25.0%
! TTAATACTGGAATGGTAAAA+TGG - chr3_2:31773398-31773417 None:intergenic 25.0%
! AAATGGAATTAATACTGGAA+TGG - chr3_2:31773406-31773425 None:intergenic 25.0%
! TAAGCAAATGGAATTAATAC+TGG - chr3_2:31773411-31773430 None:intergenic 25.0%
! TTAATTCCATTTGCTTAACT+CGG + chr3_2:31773414-31773433 Msa0402890:intron 25.0%
! TTAAAAAAACTCACTCAGAA+TGG + chr3_2:31773687-31773706 Msa0402890:intron 25.0%
! TTAACATTCTTGAACTAGAA+TGG + chr3_2:31774013-31774032 Msa0402890:intron 25.0%
!!! TATTCGCCATTTTAAGTTTA+TGG - chr3_2:31774191-31774210 None:intergenic 25.0%
!!! AATGTTAGCTCTGATATTTT+AGG + chr3_2:31774278-31774297 Msa0402890:CDS 25.0%
!!! TGTTTTTTTTTTTAGCATGG+AGG + chr3_2:31774609-31774628 Msa0402890:three_prime_UTR 25.0%
! TAAAATATAGGTGTTAACGT+AGG - chr3_2:31774661-31774680 None:intergenic 25.0%
!! ACGTCTTCGATTTAAAATAT+AGG - chr3_2:31774673-31774692 None:intergenic 25.0%
! TTAAGTGTAACAACATATGT+TGG - chr3_2:31774728-31774747 None:intergenic 25.0%
!! TTACATGGTTTTCGATTTGT+AGG + chr3_2:31770652-31770671 Msa0402890:intron 30.0%
!! TACATGGTTTTCGATTTGTA+GGG + chr3_2:31770653-31770672 Msa0402890:intron 30.0%
ATGATGAGATATGCAATGAA+GGG - chr3_2:31770779-31770798 None:intergenic 30.0%
AATGATGAGATATGCAATGA+AGG - chr3_2:31770780-31770799 None:intergenic 30.0%
TGTAATCATGGATGAAGATA+AGG - chr3_2:31770811-31770830 None:intergenic 30.0%
! CATCAAGAAGAAGTATAAAC+AGG + chr3_2:31770847-31770866 Msa0402890:CDS 30.0%
GAAGAATAATTCTATTGCAG+TGG + chr3_2:31770932-31770951 Msa0402890:CDS 30.0%
! TAATTCTATTGCAGTGGTTT+TGG + chr3_2:31770938-31770957 Msa0402890:CDS 30.0%
ATCCAAAATCAGTTAATGGT+CGG - chr3_2:31770995-31771014 None:intergenic 30.0%
CCAAATCCAAAATCAGTTAA+TGG - chr3_2:31770999-31771018 None:intergenic 30.0%
!! CCATTAACTGATTTTGGATT+TGG + chr3_2:31770996-31771015 Msa0402890:CDS 30.0%
!! TTAACTGATTTTGGATTTGG+TGG + chr3_2:31770999-31771018 Msa0402890:CDS 30.0%
AATCATACCAAGAAATTCGT+TGG + chr3_2:31771283-31771302 Msa0402890:CDS 30.0%
GTGTGATAGAGAAAAGATTA+AGG + chr3_2:31771427-31771446 Msa0402890:CDS 30.0%
AAAAGATTAAGGGTTACCAA+GGG + chr3_2:31771438-31771457 Msa0402890:CDS 30.0%
! TTTAGCTTCTTCAATAACAG+AGG - chr3_2:31771561-31771580 None:intergenic 30.0%
ATTGCCAATTACTAACTTGA+CGG + chr3_2:31771676-31771695 Msa0402890:intron 30.0%
TAATCAACAAACTTGACACA+TGG + chr3_2:31771884-31771903 Msa0402890:intron 30.0%
TTCAAGAGAATGGTAAAAAG+AGG - chr3_2:31772012-31772031 None:intergenic 30.0%
AAACTCTTGTGGACATATTA+TGG + chr3_2:31772108-31772127 Msa0402890:intron 30.0%
AGGAAGTTGAGAATTTAACT+CGG + chr3_2:31772438-31772457 Msa0402890:CDS 30.0%
AATTAACCTCAAATCATCAG+AGG - chr3_2:31772477-31772496 None:intergenic 30.0%
ATAAAAAACAAGAGCTAGAG+AGG - chr3_2:31772506-31772525 None:intergenic 30.0%
! TGGATCAATTGCTATTAGAA+AGG + chr3_2:31772878-31772897 Msa0402890:intron 30.0%
! GGATCAATTGCTATTAGAAA+GGG + chr3_2:31772879-31772898 Msa0402890:intron 30.0%
ATTAGAAAGGGATTCTATTC+TGG + chr3_2:31772891-31772910 Msa0402890:intron 30.0%
TATCCTTTCTATTTCCAATC+TGG + chr3_2:31773354-31773373 Msa0402890:intron 30.0%
CCTTTATAACTACCTCAATT+CGG - chr3_2:31773771-31773790 None:intergenic 30.0%
CGAATTGAGGTAGTTATAAA+GGG + chr3_2:31773769-31773788 Msa0402890:intron 30.0%
TTCTTAACAATAAGAACCAC+TGG + chr3_2:31773853-31773872 Msa0402890:intron 30.0%
!!! TCTGAATTTTGAAATTCCAG+TGG - chr3_2:31773872-31773891 None:intergenic 30.0%
CTGGAATTTCAAAATTCAGA+AGG + chr3_2:31773872-31773891 Msa0402890:intron 30.0%
GTAGGACCATAAACTTAAAA+TGG + chr3_2:31774182-31774201 Msa0402890:intron 30.0%
GCATTATGTTCTACTTCAAT+TGG - chr3_2:31774383-31774402 None:intergenic 30.0%
!! TGTGGTTGATGAAAAAACAT+TGG - chr3_2:31774419-31774438 None:intergenic 30.0%
ACTACGCTTCATTCAAAATA+AGG - chr3_2:31774544-31774563 None:intergenic 30.0%
CTGAGCATATCCTTAATTTA+TGG + chr3_2:31774579-31774598 Msa0402890:three_prime_UTR 30.0%
! TTAAGTGCTCGTTTTATCTA+AGG - chr3_2:31774828-31774847 None:intergenic 30.0%
ACCAAGGGAAAAACAAAAGA+GGG - chr3_2:31770473-31770492 None:intergenic 35.0%
ACAAGAAGAAGATTACTCAC+TGG - chr3_2:31770594-31770613 None:intergenic 35.0%
AGCAATTAGTGCATGATGAA+TGG - chr3_2:31770624-31770643 None:intergenic 35.0%
CACTACTCACAAAGTTGAAT+CGG - chr3_2:31770722-31770741 None:intergenic 35.0%
ATGGATGAAGATAAGGAACT+AGG - chr3_2:31770804-31770823 None:intergenic 35.0%
TATTGGAAGGGTTGTAATCA+TGG - chr3_2:31770823-31770842 None:intergenic 35.0%
ATAAGACCTAATTCTGCAGA+TGG + chr3_2:31770870-31770889 Msa0402890:CDS 35.0%
!! ATCCGACCATTAACTGATTT+TGG + chr3_2:31770990-31771009 Msa0402890:CDS 35.0%
!!! GTTGGACTGTTTTTAGTTTC+CGG + chr3_2:31771044-31771063 Msa0402890:CDS 35.0%
TTCAAATACGATCCAAGTTC+AGG + chr3_2:31771108-31771127 Msa0402890:CDS 35.0%
GCTTCAATACTTCTTAACGA+AGG - chr3_2:31771236-31771255 None:intergenic 35.0%
ACTTCAACCAACGAATTTCT+TGG - chr3_2:31771293-31771312 None:intergenic 35.0%
GAAAAGATTAAGGGTTACCA+AGG + chr3_2:31771437-31771456 Msa0402890:CDS 35.0%
AAAGATTAAGGGTTACCAAG+GGG + chr3_2:31771439-31771458 Msa0402890:CDS 35.0%
!! TAAGTTTGGATGCATTGGTT+GGG + chr3_2:31771462-31771481 Msa0402890:CDS 35.0%
TGTTGCCAACAGTTATTCAT+TGG + chr3_2:31771523-31771542 Msa0402890:CDS 35.0%
TTCAGCCAATGAATAACTGT+TGG - chr3_2:31771531-31771550 None:intergenic 35.0%
AGCTAAACCACTTCTTACAA+AGG + chr3_2:31771574-31771593 Msa0402890:CDS 35.0%
GATTCAACAGTCTATTCTAG+AGG - chr3_2:31771646-31771665 None:intergenic 35.0%
CGTTTCTGCTGTTATATTGT+TGG + chr3_2:31771800-31771819 Msa0402890:intron 35.0%
GGCAATTATGCTCAAATGTT+TGG - chr3_2:31771841-31771860 None:intergenic 35.0%
TCACTTCATTCAAACTCTTG+TGG + chr3_2:31772097-31772116 Msa0402890:intron 35.0%
CTACAGCAATGGGAAAATAT+GGG - chr3_2:31772343-31772362 None:intergenic 35.0%
ACTACAGCAATGGGAAAATA+TGG - chr3_2:31772344-31772363 None:intergenic 35.0%
TGAAGATCTTCAACCTTTGT+TGG + chr3_2:31772388-31772407 Msa0402890:CDS 35.0%
ATTTGACATGCATGGATATG+TGG + chr3_2:31772531-31772550 Msa0402890:intron 35.0%
! TTTTCACCTTCATCTGCAAA+TGG + chr3_2:31772692-31772711 Msa0402890:intron 35.0%
! TGTGATGGGATTCTATTATC+CGG - chr3_2:31772740-31772759 None:intergenic 35.0%
AGTGGATGAAATAGATGACA+TGG + chr3_2:31772787-31772806 Msa0402890:intron 35.0%
GTGGATGAAATAGATGACAT+GGG + chr3_2:31772788-31772807 Msa0402890:intron 35.0%
TTATACTTGATCATTGCGAG+AGG - chr3_2:31772832-31772851 None:intergenic 35.0%
! ACTTCCCTCTTTTTGTAATC+TGG - chr3_2:31772967-31772986 None:intergenic 35.0%
GGAAAAAGACGAGAGATATA+GGG + chr3_2:31773274-31773293 Msa0402890:intron 35.0%
GAAAAAGACGAGAGATATAG+GGG + chr3_2:31773275-31773294 Msa0402890:intron 35.0%
CTTCCAGATTGGAAATAGAA+AGG - chr3_2:31773360-31773379 None:intergenic 35.0%
CTTTCTATTTCCAATCTGGA+AGG + chr3_2:31773358-31773377 Msa0402890:intron 35.0%
AGAATTCCGAGTTAAGCAAA+TGG - chr3_2:31773423-31773442 None:intergenic 35.0%
AGACTTAGTACACAAGTGTT+GGG - chr3_2:31773496-31773515 None:intergenic 35.0%
TAGACTTAGTACACAAGTGT+TGG - chr3_2:31773497-31773516 None:intergenic 35.0%
! CTCTCAAGTTTGACAGTTTT+AGG + chr3_2:31773583-31773602 Msa0402890:intron 35.0%
GAGAGAAAATGATAAACCCA+TGG + chr3_2:31773631-31773650 Msa0402890:intron 35.0%
AATGATAAACCCATGGTTGT+TGG + chr3_2:31773638-31773657 Msa0402890:intron 35.0%
CCGAATTGAGGTAGTTATAA+AGG + chr3_2:31773768-31773787 Msa0402890:intron 35.0%
TCATCTAATGCTTATGCAGA+AGG + chr3_2:31774072-31774091 Msa0402890:intron 35.0%
CATCTAATGCTTATGCAGAA+GGG + chr3_2:31774073-31774092 Msa0402890:intron 35.0%
GGTGAATATGAGAGAGTAAA+TGG - chr3_2:31774147-31774166 None:intergenic 35.0%
!! TCTGATATTTTAGGCTTCAC+TGG + chr3_2:31774287-31774306 Msa0402890:CDS 35.0%
! TCATAGTCGATTCTAAGTTC+TGG + chr3_2:31774472-31774491 Msa0402890:three_prime_UTR 35.0%
! CTAAGTTCTGGTATTTCCTA+TGG + chr3_2:31774484-31774503 Msa0402890:three_prime_UTR 35.0%
TAGGTGTTAACGTAGGTAAA+AGG - chr3_2:31774654-31774673 None:intergenic 35.0%
! TTTTAAATCGAAGACGTGTC+TGG + chr3_2:31774676-31774695 Msa0402890:three_prime_UTR 35.0%
AAAAACAAAAGAGGGCCAAC+CGG - chr3_2:31770465-31770484 None:intergenic 40.0%
GACCAAGGGAAAAACAAAAG+AGG - chr3_2:31770474-31770493 None:intergenic 40.0%
! CCAATCAGAGAGTGTGATTT+AGG - chr3_2:31770558-31770577 None:intergenic 40.0%
CCTAAATCACACTCTCTGAT+TGG + chr3_2:31770555-31770574 Msa0402890:five_prime_UTR 40.0%
AGTTAATGGTCGGATAGTTC+GGG - chr3_2:31770985-31771004 None:intergenic 40.0%
CAGTTAATGGTCGGATAGTT+CGG - chr3_2:31770986-31771005 None:intergenic 40.0%
!!! CTGATTTTGGATTTGGTGGT+AGG + chr3_2:31771003-31771022 Msa0402890:CDS 40.0%
! ATTTGGTGGTAGGACCATTT+GGG + chr3_2:31771013-31771032 Msa0402890:CDS 40.0%
! TTTTCGCACTTAGTTTAGCG+TGG + chr3_2:31771075-31771094 Msa0402890:CDS 40.0%
ACTTAGTTTAGCGTGGTTGA+AGG + chr3_2:31771082-31771101 Msa0402890:CDS 40.0%
CTTAGTTTAGCGTGGTTGAA+GGG + chr3_2:31771083-31771102 Msa0402890:CDS 40.0%
CTGAGAAAACTCAACTGTTG+CGG - chr3_2:31771141-31771160 None:intergenic 40.0%
TTGGTTGAAGTTAACCAGTC+AGG + chr3_2:31771302-31771321 Msa0402890:CDS 40.0%
TAACCAGTCAGGTCTTCTTA+TGG + chr3_2:31771313-31771332 Msa0402890:CDS 40.0%
TTATGACATTCCTGGTCAAG+CGG - chr3_2:31771392-31771411 None:intergenic 40.0%
GACCAGGAATGTCATAAAGA+AGG + chr3_2:31771395-31771414 Msa0402890:CDS 40.0%
GACCTTCTTTATGACATTCC+TGG - chr3_2:31771400-31771419 None:intergenic 40.0%
! GTAAGTTTGGATGCATTGGT+TGG + chr3_2:31771461-31771480 Msa0402890:CDS 40.0%
TTGGGATATTTACCCGTCTT+GGG + chr3_2:31771480-31771499 Msa0402890:CDS 40.0%
CATCACACCTTTGTAAGAAG+TGG - chr3_2:31771584-31771603 None:intergenic 40.0%
GCAACCGTCAAGTTAGTAAT+TGG - chr3_2:31771683-31771702 None:intergenic 40.0%
ACCATTCTCTTGAAGCATAG+TGG + chr3_2:31772018-31772037 Msa0402890:intron 40.0%
TCCACTATGCTTCAAGAGAA+TGG - chr3_2:31772022-31772041 None:intergenic 40.0%
AACACTTGTTCTGACATCAG+AGG - chr3_2:31772254-31772273 None:intergenic 40.0%
CTGATGTCAGAACAAGTGTT+TGG + chr3_2:31772254-31772273 Msa0402890:intron 40.0%
TGAGACATCACTACAGCAAT+GGG - chr3_2:31772353-31772372 None:intergenic 40.0%
AATCATCAGAGGCTTGTGTA+AGG - chr3_2:31772466-31772485 None:intergenic 40.0%
!! ATGAGGAGTATCGACAGTTA+AGG + chr3_2:31772632-31772651 Msa0402890:intron 40.0%
TATCGACAGTTAAGGTGGTA+AGG + chr3_2:31772640-31772659 Msa0402890:intron 40.0%
ATCGACAGTTAAGGTGGTAA+GGG + chr3_2:31772641-31772660 Msa0402890:intron 40.0%
GGATAATAGAATCCCATCAC+AGG + chr3_2:31772739-31772758 Msa0402890:intron 40.0%
CATCTATTTCATCCACTGCT+TGG - chr3_2:31772784-31772803 None:intergenic 40.0%
AGAAAGGGATTCTATTCTGG+AGG + chr3_2:31772894-31772913 Msa0402890:intron 40.0%
TGCAGCCAGATTACAAAAAG+AGG + chr3_2:31772959-31772978 Msa0402890:CDS 40.0%
GCAGCCAGATTACAAAAAGA+GGG + chr3_2:31772960-31772979 Msa0402890:CDS 40.0%
AGGTGAAACTGTGTATTTGC+AGG + chr3_2:31772999-31773018 Msa0402890:CDS 40.0%
AGACTTCATCCTACAAGGTT+GGG - chr3_2:31773025-31773044 None:intergenic 40.0%
CAAATGAAAAGCTCGGTCAA+AGG + chr3_2:31773058-31773077 Msa0402890:CDS 40.0%
! AAGCTCGGTCAAAGGTTTTA+TGG + chr3_2:31773066-31773085 Msa0402890:CDS 40.0%
CGTGCAATATGAATGACTGA+AGG + chr3_2:31773187-31773206 Msa0402890:intron 40.0%
GCAATATGAATGACTGAAGG+AGG + chr3_2:31773190-31773209 Msa0402890:intron 40.0%
GGAGGAATAACAGAATTGAC+AGG + chr3_2:31773208-31773227 Msa0402890:intron 40.0%
GGGAAAAAGACGAGAGATAT+AGG + chr3_2:31773273-31773292 Msa0402890:intron 40.0%
AGAGCTGAGAATTGTGGTAT+CGG + chr3_2:31773318-31773337 Msa0402890:intron 40.0%
ACTGGAATGGTAAAATGGTC+TGG - chr3_2:31773393-31773412 None:intergenic 40.0%
TTGCTTAACTCGGAATTCTC+AGG + chr3_2:31773424-31773443 Msa0402890:intron 40.0%
TGCTTAACTCGGAATTCTCA+GGG + chr3_2:31773425-31773444 Msa0402890:intron 40.0%
ACTCTTACGAGTAAGCTATG+TGG + chr3_2:31773538-31773557 Msa0402890:intron 40.0%
CTGCACAATAACAGAATGCA+TGG + chr3_2:31773711-31773730 Msa0402890:intron 40.0%
ATCACTCACCAATCCCAAAA+TGG - chr3_2:31773744-31773763 None:intergenic 40.0%
! TGAGAGAGTAAATGGACTTC+TGG - chr3_2:31774139-31774158 None:intergenic 40.0%
ATTCACCCTGAAGAACATTG+AGG + chr3_2:31774160-31774179 Msa0402890:CDS 40.0%
TCCTACCTCAATGTTCTTCA+GGG - chr3_2:31774168-31774187 None:intergenic 40.0%
TACTAATCAAGTCTCTCAGC+AGG + chr3_2:31774339-31774358 Msa0402890:CDS 40.0%
TTTCATCAACCACAACCTTG+AGG + chr3_2:31774425-31774444 Msa0402890:three_prime_UTR 40.0%
TTCATCAACCACAACCTTGA+GGG + chr3_2:31774426-31774445 Msa0402890:three_prime_UTR 40.0%
AAAACAAAAGAGGGCCAACC+GGG - chr3_2:31770464-31770483 None:intergenic 45.0%
!!! GCCCTCTTTTGTTTTTCCCT+TGG + chr3_2:31770469-31770488 Msa0402890:five_prime_UTR 45.0%
GATACTTGAGCTGCTGGTAA+AGG - chr3_2:31770681-31770700 None:intergenic 45.0%
TGAAGAGATACTTGAGCTGC+TGG - chr3_2:31770687-31770706 None:intergenic 45.0%
AGACCTAATTCTGCAGATGG+AGG + chr3_2:31770873-31770892 Msa0402890:CDS 45.0%
TGTCCTCCATCTGCAGAATT+AGG - chr3_2:31770879-31770898 None:intergenic 45.0%
!! GATGATTCTGAAGCAGACGA+CGG - chr3_2:31770912-31770931 None:intergenic 45.0%
!! GATTTGGTGGTAGGACCATT+TGG + chr3_2:31771012-31771031 Msa0402890:CDS 45.0%
! AAGTGCGAAAAGAAGAGCAC+CGG - chr3_2:31771066-31771085 None:intergenic 45.0%
TGCGGTATACTTCCTGAACT+TGG - chr3_2:31771123-31771142 None:intergenic 45.0%
! CGCAACAGTTGAGTTTTCTC+AGG + chr3_2:31771139-31771158 Msa0402890:CDS 45.0%
! GTTGAGTTTTCTCAGGCTTG+TGG + chr3_2:31771146-31771165 Msa0402890:CDS 45.0%
CAGGCTTGTGGTATATCTAC+TGG + chr3_2:31771158-31771177 Msa0402890:CDS 45.0%
TGGTATATCTACTGGAACGC+CGG + chr3_2:31771166-31771185 Msa0402890:CDS 45.0%
TCTCCATAAGAAGACCTGAC+TGG - chr3_2:31771319-31771338 None:intergenic 45.0%
AGATCCCATTCCAACACCTT+CGG + chr3_2:31771361-31771380 Msa0402890:CDS 45.0%
ATGCATCCAAACTTACCCCT+TGG - chr3_2:31771457-31771476 None:intergenic 45.0%
AGGGGTAAGTTTGGATGCAT+TGG + chr3_2:31771457-31771476 Msa0402890:CDS 45.0%
GTTGGGATATTTACCCGTCT+TGG + chr3_2:31771479-31771498 Msa0402890:CDS 45.0%
GGGCGAGATGTAGAGAAAAT+TGG + chr3_2:31771500-31771519 Msa0402890:CDS 45.0%
CTGAGACATCACTACAGCAA+TGG - chr3_2:31772354-31772373 None:intergenic 45.0%
GATGTCTCAGATCAATGCCA+TGG + chr3_2:31772364-31772383 Msa0402890:intron 45.0%
AGGTTGAAGATCTTCAGCCA+TGG - chr3_2:31772384-31772403 None:intergenic 45.0%
CCTTCAACAAGCCACTATCA+CGG - chr3_2:31772421-31772440 None:intergenic 45.0%
CACAAGCCTCTGATGATTTG+AGG + chr3_2:31772468-31772487 Msa0402890:CDS 45.0%
TCTAGATGCTGCAAGCACAA+TGG - chr3_2:31772594-31772613 None:intergenic 45.0%
TGCTTGCAGCATCTAGATCT+TGG + chr3_2:31772597-31772616 Msa0402890:CDS 45.0%
GCTTGCAGCATCTAGATCTT+GGG + chr3_2:31772598-31772617 Msa0402890:CDS 45.0%
CTTGCAGCATCTAGATCTTG+GGG + chr3_2:31772599-31772618 Msa0402890:CDS 45.0%
ACTGTCGATACTCCTCATTC+AGG - chr3_2:31772630-31772649 None:intergenic 45.0%
!! AGGAGTATCGACAGTTAAGG+TGG + chr3_2:31772635-31772654 Msa0402890:intron 45.0%
CACCTTCATCTGCAAATGGA+CGG + chr3_2:31772696-31772715 Msa0402890:intron 45.0%
GCAAAACAGTGGTGACATAC+CGG + chr3_2:31772718-31772737 Msa0402890:intron 45.0%
ATTCACCAGACACCTGTGAT+GGG - chr3_2:31772754-31772773 None:intergenic 45.0%
AGGGAAGTCGAAGTTAGAGT+AGG + chr3_2:31772979-31772998 Msa0402890:CDS 45.0%
GAGACTTCATCCTACAAGGT+TGG - chr3_2:31773026-31773045 None:intergenic 45.0%
GCAAGAGACTTCATCCTACA+AGG - chr3_2:31773030-31773049 None:intergenic 45.0%
AGCCGCTCAAATGAAAAGCT+CGG + chr3_2:31773051-31773070 Msa0402890:CDS 45.0%
! GACCGAGCTTTTCATTTGAG+CGG - chr3_2:31773056-31773075 None:intergenic 45.0%
! GTTTTATGGTCCGTATGCGT+GGG + chr3_2:31773080-31773099 Msa0402890:intron 45.0%
! TTTTATGGTCCGTATGCGTG+GGG + chr3_2:31773081-31773100 Msa0402890:intron 45.0%
CATTCTTGGGCCCATTCTAT+TGG - chr3_2:31773159-31773178 None:intergenic 45.0%
GCACGCAAGTTCACATTCTT+GGG - chr3_2:31773172-31773191 None:intergenic 45.0%
TGCACGCAAGTTCACATTCT+TGG - chr3_2:31773173-31773192 None:intergenic 45.0%
GAATTGACAGGTGACCATCA+TGG + chr3_2:31773220-31773239 Msa0402890:intron 45.0%
!! GACCATCATGGATTGGACAA+AGG + chr3_2:31773232-31773251 Msa0402890:intron 45.0%
CTCCTTTGTCCAATCCATGA+TGG - chr3_2:31773237-31773256 None:intergenic 45.0%
!! CATCATGGATTGGACAAAGG+AGG + chr3_2:31773235-31773254 Msa0402890:intron 45.0%
!! GAATTGTGGTATCGGTCTCT+AGG + chr3_2:31773326-31773345 Msa0402890:intron 45.0%
! TGGTAAAATGGTCTGGAGCT+AGG - chr3_2:31773386-31773405 None:intergenic 45.0%
AGGTGTGTGTGCACAAAAGA+AGG + chr3_2:31773603-31773622 Msa0402890:intron 45.0%
GGTGTGTGTGCACAAAAGAA+GGG + chr3_2:31773604-31773623 Msa0402890:intron 45.0%
GTGTGTGTGCACAAAAGAAG+GGG + chr3_2:31773605-31773624 Msa0402890:intron 45.0%
CTCTACTCTCCAACAACCAT+GGG - chr3_2:31773650-31773669 None:intergenic 45.0%
TCTCTACTCTCCAACAACCA+TGG - chr3_2:31773651-31773670 None:intergenic 45.0%
GTTGTTGGAGAGTAGAGACT+AGG + chr3_2:31773653-31773672 Msa0402890:intron 45.0%
!!! TGCATGGACAAGTGCCATTT+TGG + chr3_2:31773727-31773746 Msa0402890:intron 45.0%
!!! GCATGGACAAGTGCCATTTT+GGG + chr3_2:31773728-31773747 Msa0402890:intron 45.0%
!!! GACAAGTGCCATTTTGGGAT+TGG + chr3_2:31773733-31773752 Msa0402890:intron 45.0%
! TGAGTGATGATGCCGAATTG+AGG + chr3_2:31773756-31773775 Msa0402890:intron 45.0%
GATCAGTTCAGTGTTCTCAG+GGG - chr3_2:31774117-31774136 None:intergenic 45.0%
GGATCAGTTCAGTGTTCTCA+GGG - chr3_2:31774118-31774137 None:intergenic 45.0%
TGGATCAGTTCAGTGTTCTC+AGG - chr3_2:31774119-31774138 None:intergenic 45.0%
ACCCTGAAGAACATTGAGGT+AGG + chr3_2:31774164-31774183 Msa0402890:intron 45.0%
GTCCTACCTCAATGTTCTTC+AGG - chr3_2:31774169-31774188 None:intergenic 45.0%
TCATCAACCACAACCTTGAG+GGG + chr3_2:31774427-31774446 Msa0402890:three_prime_UTR 45.0%
! ATTACTGTTTTCCCCCCTCA+AGG - chr3_2:31774443-31774462 None:intergenic 45.0%
CGACACTGACATGTAGACAA+AGG - chr3_2:31774776-31774795 None:intergenic 45.0%
GGAGAGAGAGAGAAGACCAA+GGG - chr3_2:31770488-31770507 None:intergenic 50.0%
AGGAGAGAGAGAGAAGACCA+AGG - chr3_2:31770489-31770508 None:intergenic 50.0%
CGTGTGTGTGCAACAGAATG+GGG - chr3_2:31770520-31770539 None:intergenic 50.0%
CCGTGTGTGTGCAACAGAAT+GGG - chr3_2:31770521-31770540 None:intergenic 50.0%
CCCATTCTGTTGCACACACA+CGG + chr3_2:31770518-31770537 Msa0402890:five_prime_UTR 50.0%
TCCGTGTGTGTGCAACAGAA+TGG - chr3_2:31770522-31770541 None:intergenic 50.0%
TAGTTCGGGTCCAAATGGCA+CGG - chr3_2:31770971-31770990 None:intergenic 50.0%
TCGGATAGTTCGGGTCCAAA+TGG - chr3_2:31770976-31770995 None:intergenic 50.0%
ACCATTTGGGAAGGTGGTGT+TGG + chr3_2:31771026-31771045 Msa0402890:CDS 50.0%
TCCAACACCACCTTCCCAAA+TGG - chr3_2:31771030-31771049 None:intergenic 50.0%
TGTTGGAATGGGATCTCGAG+GGG - chr3_2:31771357-31771376 None:intergenic 50.0%
GTGTTGGAATGGGATCTCGA+GGG - chr3_2:31771358-31771377 None:intergenic 50.0%
GGGTTACCAAGGGGTAAGTT+TGG + chr3_2:31771448-31771467 Msa0402890:CDS 50.0%
TCTCTACATCTCGCCCAAGA+CGG - chr3_2:31771496-31771515 None:intergenic 50.0%
TCACGGACATCAGCCAACAA+AGG - chr3_2:31772404-31772423 None:intergenic 50.0%
TTGGCTGATGTCCGTGATAG+TGG + chr3_2:31772407-31772426 Msa0402890:CDS 50.0%
!! CCGTGATAGTGGCTTGTTGA+AGG + chr3_2:31772418-31772437 Msa0402890:CDS 50.0%
CTTGGGGTAGATCCTGAATG+AGG + chr3_2:31772615-31772634 Msa0402890:intron 50.0%
! GTTAAGGTGGTAAGGGTGTG+TGG + chr3_2:31772648-31772667 Msa0402890:intron 50.0%
TGCCGTCCATTTGCAGATGA+AGG - chr3_2:31772701-31772720 None:intergenic 50.0%
GCAAATGGACGGCAAAACAG+TGG + chr3_2:31772707-31772726 Msa0402890:intron 50.0%
AGAATCCCATCACAGGTGTC+TGG + chr3_2:31772746-31772765 Msa0402890:intron 50.0%
CATTCACCAGACACCTGTGA+TGG - chr3_2:31772755-31772774 None:intergenic 50.0%
CATCACAGGTGTCTGGTGAA+TGG + chr3_2:31772753-31772772 Msa0402890:intron 50.0%
TGAATGGATGTGCCAAGCAG+TGG + chr3_2:31772769-31772788 Msa0402890:intron 50.0%
! AGATGACATGGGCTGAGTTC+TGG + chr3_2:31772799-31772818 Msa0402890:intron 50.0%
ATTTGCAGGCCCAACCTTGT+AGG + chr3_2:31773013-31773032 Msa0402890:CDS 50.0%
! GAGCTTTTCATTTGAGCGGC+TGG - chr3_2:31773052-31773071 None:intergenic 50.0%
!! GGTTTTATGGTCCGTATGCG+TGG + chr3_2:31773079-31773098 Msa0402890:intron 50.0%
TTTATGGTCCGTATGCGTGG+GGG + chr3_2:31773082-31773101 Msa0402890:intron 50.0%
AGAGGAGTGGGCCAATAGAA+TGG + chr3_2:31773145-31773164 Msa0402890:intron 50.0%
GAGGAGTGGGCCAATAGAAT+GGG + chr3_2:31773146-31773165 Msa0402890:intron 50.0%
GACAGGTGACCATCATGGAT+TGG + chr3_2:31773225-31773244 Msa0402890:intron 50.0%
! TGGATTGGACAAAGGAGGTG+TGG + chr3_2:31773240-31773259 Msa0402890:intron 50.0%
! GGATTGGACAAAGGAGGTGT+GGG + chr3_2:31773241-31773260 Msa0402890:intron 50.0%
! AGGAGGTGTGGGAGTCATAA+TGG + chr3_2:31773252-31773271 Msa0402890:intron 50.0%
! GGAGGTGTGGGAGTCATAAT+GGG + chr3_2:31773253-31773272 Msa0402890:intron 50.0%
GTGGGTAGAGCTGAGAATTG+TGG + chr3_2:31773312-31773331 Msa0402890:intron 50.0%
GTGTGCACAAAAGAAGGGGA+TGG + chr3_2:31773609-31773628 Msa0402890:intron 50.0%
GTTGGAGAGTAGAGACTAGG+AGG + chr3_2:31773656-31773675 Msa0402890:intron 50.0%
CATCAACCACAACCTTGAGG+GGG + chr3_2:31774428-31774447 Msa0402890:three_prime_UTR 50.0%
ATCAACCACAACCTTGAGGG+GGG + chr3_2:31774429-31774448 Msa0402890:three_prime_UTR 50.0%
CGGCAGAATGCAAGAACCAT+AGG - chr3_2:31774503-31774522 None:intergenic 50.0%
CATGTCAGTGTCGTACTGCT+TGG + chr3_2:31774783-31774802 Msa0402890:three_prime_UTR 50.0%
AACAGAATGGGGCATGGAGG+AGG - chr3_2:31770509-31770528 None:intergenic 55.0%
TGCAACAGAATGGGGCATGG+AGG - chr3_2:31770512-31770531 None:intergenic 55.0%
GTGTGCAACAGAATGGGGCA+TGG - chr3_2:31770515-31770534 None:intergenic 55.0%
! TGGACATTCCCCGTGCCATT+TGG + chr3_2:31770958-31770977 Msa0402890:CDS 55.0%
AGTTCGGGTCCAAATGGCAC+GGG - chr3_2:31770970-31770989 None:intergenic 55.0%
GGTGGTAGGACCATTTGGGA+AGG + chr3_2:31771017-31771036 Msa0402890:CDS 55.0%
GGTAGGACCATTTGGGAAGG+TGG + chr3_2:31771020-31771039 Msa0402890:CDS 55.0%
TATCTACTGGAACGCCGGTG+AGG + chr3_2:31771171-31771190 Msa0402890:CDS 55.0%
AGGATCAGAGGGGTGACTGT+CGG + chr3_2:31771191-31771210 Msa0402890:CDS 55.0%
! GGTGTTGGAATGGGATCTCG+AGG - chr3_2:31771359-31771378 None:intergenic 55.0%
!! CCAGCCGAAGGTGTTGGAAT+GGG - chr3_2:31771368-31771387 None:intergenic 55.0%
!! ACCAGCCGAAGGTGTTGGAA+TGG - chr3_2:31771369-31771388 None:intergenic 55.0%
CTCTACATCTCGCCCAAGAC+GGG - chr3_2:31771495-31771514 None:intergenic 55.0%
GAGCTAGGCTCCTTCCAGAT+TGG - chr3_2:31773371-31773390 None:intergenic 55.0%
! GTTTTCCCCCCTCAAGGTTG+TGG - chr3_2:31774437-31774456 None:intergenic 55.0%
GTCTGGTGTCTGACATGTGC+TGG + chr3_2:31774693-31774712 Msa0402890:three_prime_UTR 55.0%
GTTCGGGTCCAAATGGCACG+GGG - chr3_2:31770969-31770988 None:intergenic 60.0%
GAACGCCGGTGAGGATCAGA+GGG + chr3_2:31771180-31771199 Msa0402890:CDS 60.0%
AACGCCGGTGAGGATCAGAG+GGG + chr3_2:31771181-31771200 Msa0402890:CDS 60.0%
GTCACCCCTCTGATCCTCAC+CGG - chr3_2:31771188-31771207 None:intergenic 60.0%
CCCATTCCAACACCTTCGGC+TGG + chr3_2:31771365-31771384 Msa0402890:CDS 60.0%
TGGCCGTATGCGTGGGAGAA+GGG + chr3_2:31773114-31773133 Msa0402890:intron 60.0%
CACCCCTTCTCCCACGCATA+CGG - chr3_2:31773120-31773139 None:intergenic 60.0%
GGAACGCCGGTGAGGATCAG+AGG + chr3_2:31771179-31771198 Msa0402890:CDS 65.0%
! AGCGGACCAGCCGAAGGTGT+TGG - chr3_2:31771374-31771393 None:intergenic 65.0%
TGGTCAAGCGGACCAGCCGA+AGG - chr3_2:31771380-31771399 None:intergenic 65.0%
! TTCGGCTGGTCCGCTTGACC+AGG + chr3_2:31771379-31771398 Msa0402890:CDS 65.0%
TGGTCCGTATGCGTGGGGGA+AGG + chr3_2:31773086-31773105 Msa0402890:intron 65.0%
GGTCCGTATGCGTGGGGGAA+GGG + chr3_2:31773087-31773106 Msa0402890:intron 65.0%
GTCCGTATGCGTGGGGGAAG+GGG + chr3_2:31773088-31773107 Msa0402890:intron 65.0%
CACCCCTTCCCCCACGCATA+CGG - chr3_2:31773093-31773112 None:intergenic 65.0%
CTGGCCGTATGCGTGGGAGA+AGG + chr3_2:31773113-31773132 Msa0402890:intron 65.0%
GGCCGTATGCGTGGGAGAAG+GGG + chr3_2:31773115-31773134 Msa0402890:intron 65.0%
! ATGCGTGGGAGAAGGGGTGC+TGG + chr3_2:31773121-31773140 Msa0402890:intron 65.0%
!! TGCGTGGGAGAAGGGGTGCT+GGG + chr3_2:31773122-31773141 Msa0402890:intron 65.0%
!! AAGGGGTGCTGGGAGAGGAG+TGG + chr3_2:31773132-31773151 Msa0402890:intron 65.0%
!! AGGGGTGCTGGGAGAGGAGT+GGG + chr3_2:31773133-31773152 Msa0402890:intron 65.0%
! ATGCGTGGGGGAAGGGGTGC+TGG + chr3_2:31773094-31773113 Msa0402890:intron 70.0%
!! AGGGGTGCTGGCCGTATGCG+TGG + chr3_2:31773106-31773125 Msa0402890:intron 70.0%
!! GGGGTGCTGGCCGTATGCGT+GGG + chr3_2:31773107-31773126 Msa0402890:intron 70.0%
!! GGGAGAAGGGGTGCTGGGAG+AGG + chr3_2:31773127-31773146 Msa0402890:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 31770448 31774862 31770448 ID=Msa0402890;Name=Msa0402890
chr3_2 mRNA 31770448 31774862 31770448 ID=Msa0402890-mRNA-1;Parent=Msa0402890;Name=Msa0402890-mRNA-1;_AED=0.15;_eAED=0.15;_QI=237|0.5|0.71|0.71|0.83|0.71|7|492|461
chr3_2 exon 31770448 31770593 31770448 ID=Msa0402890-mRNA-1:exon:6305;Parent=Msa0402890-mRNA-1
chr3_2 exon 31770674 31771595 31770674 ID=Msa0402890-mRNA-1:exon:6306;Parent=Msa0402890-mRNA-1
chr3_2 exon 31772374 31772489 31772374 ID=Msa0402890-mRNA-1:exon:6307;Parent=Msa0402890-mRNA-1
chr3_2 exon 31772562 31772620 31772562 ID=Msa0402890-mRNA-1:exon:6308;Parent=Msa0402890-mRNA-1
chr3_2 exon 31772896 31773091 31772896 ID=Msa0402890-mRNA-1:exon:6309;Parent=Msa0402890-mRNA-1
chr3_2 exon 31774091 31774181 31774091 ID=Msa0402890-mRNA-1:exon:6310;Parent=Msa0402890-mRNA-1
chr3_2 exon 31774278 31774862 31774278 ID=Msa0402890-mRNA-1:exon:6311;Parent=Msa0402890-mRNA-1
chr3_2 five_prime_UTR 31770448 31770593 31770448 ID=Msa0402890-mRNA-1:five_prime_utr;Parent=Msa0402890-mRNA-1
chr3_2 five_prime_UTR 31770674 31770764 31770674 ID=Msa0402890-mRNA-1:five_prime_utr;Parent=Msa0402890-mRNA-1
chr3_2 CDS 31770765 31771595 31770765 ID=Msa0402890-mRNA-1:cds;Parent=Msa0402890-mRNA-1
chr3_2 CDS 31772374 31772489 31772374 ID=Msa0402890-mRNA-1:cds;Parent=Msa0402890-mRNA-1
chr3_2 CDS 31772562 31772620 31772562 ID=Msa0402890-mRNA-1:cds;Parent=Msa0402890-mRNA-1
chr3_2 CDS 31772896 31773091 31772896 ID=Msa0402890-mRNA-1:cds;Parent=Msa0402890-mRNA-1
chr3_2 CDS 31774091 31774181 31774091 ID=Msa0402890-mRNA-1:cds;Parent=Msa0402890-mRNA-1
chr3_2 CDS 31774278 31774370 31774278 ID=Msa0402890-mRNA-1:cds;Parent=Msa0402890-mRNA-1
chr3_2 three_prime_UTR 31774371 31774862 31774371 ID=Msa0402890-mRNA-1:three_prime_utr;Parent=Msa0402890-mRNA-1
Gene Sequence

>Msa0402890

ATGGTTGGAAACCCTTCATTGCATATCTCATCATTTCCTAGTTCCTTATCTTCATCCATGATTACAACCCTTCCAATAAATTCATCAAGAAGAAGTATAAACAGGATAAGACCTAATTCTGCAGATGGAGGACATGTTCAACAACCGTCGTCTGCTTCAGAATCATCGAAGAATAATTCTATTGCAGTGGTTTTGGACATTCCCCGTGCCATTTGGACCCGAACTATCCGACCATTAACTGATTTTGGATTTGGTGGTAGGACCATTTGGGAAGGTGGTGTTGGACTGTTTTTAGTTTCCGGTGCTCTTCTTTTCGCACTTAGTTTAGCGTGGTTGAAGGGTTTTCAAATACGATCCAAGTTCAGGAAGTATACCGCAACAGTTGAGTTTTCTCAGGCTTGTGGTATATCTACTGGAACGCCGGTGAGGATCAGAGGGGTGACTGTCGGTGATGTCATTCGAGTTAATCCTTCGTTAAGAAGTATTGAAGCTGTTATCGAGATTGAAGATGATAAAACAATCATACCAAGAAATTCGTTGGTTGAAGTTAACCAGTCAGGTCTTCTTATGGAGACTATAATTGACATTACCCCTCGAGATCCCATTCCAACACCTTCGGCTGGTCCGCTTGACCAGGAATGTCATAAAGAAGGTCTTATTGTGTGTGATAGAGAAAAGATTAAGGGTTACCAAGGGGTAAGTTTGGATGCATTGGTTGGGATATTTACCCGTCTTGGGCGAGATGTAGAGAAAATTGGTGTTGCCAACAGTTATTCATTGGCTGAACGAGCTGCCTCTGTTATTGAAGAAGCTAAACCACTTCTTACAAAGATCAATGCCATGGCTGAAGATCTTCAACCTTTGTTGGCTGATGTCCGTGATAGTGGCTTGTTGAAGGAAGTTGAGAATTTAACTCGGAGCCTTACACAAGCCTCTGATGATTTGAGCATGTTAATTAATATTAGAATAGGGGATGCCATTGTGCTTGCAGCATCTAGATCTTGGGAAAGGGATTCTATTCTGGAGGAGCTGAAGTACAATTTATGTAGAGCTCAAAATAAGAAGAAAGTGCAGCCAGATTACAAAAAGAGGGAAGTCGAAGTTAGAGTAGGTGAAACTGTGTATTTGCAGGCCCAACCTTGTAGGATGAAGTCTCTTGCCAGCCGCTCAAATGAAAAGCTCGGTCAAAGGTTTTATGGTCCAAGGGTACATTCATCAATTTTGACCCCTGAGAACACTGAACTGATCCAGAAGTCCATTTACTCTCTCATATTCACCCTGAAGAACATTGAGAATGTTAGCTCTGATATTTTAGGCTTCACTGGTGATGAAGCTACAAGAAAGAATTTGAAGTTACTAATCAAGTCTCTCAGCAGGTTACTGTGA

Protein sequence

>Msa0402890

MVGNPSLHISSFPSSLSSSMITTLPINSSRRSINRIRPNSADGGHVQQPSSASESSKNNSIAVVLDIPRAIWTRTIRPLTDFGFGGRTIWEGGVGLFLVSGALLFALSLAWLKGFQIRSKFRKYTATVEFSQACGISTGTPVRIRGVTVGDVIRVNPSLRSIEAVIEIEDDKTIIPRNSLVEVNQSGLLMETIIDITPRDPIPTPSAGPLDQECHKEGLIVCDREKIKGYQGVSLDALVGIFTRLGRDVEKIGVANSYSLAERAASVIEEAKPLLTKINAMAEDLQPLLADVRDSGLLKEVENLTRSLTQASDDLSMLINIRIGDAIVLAASRSWERDSILEELKYNLCRAQNKKKVQPDYKKREVEVRVGETVYLQAQPCRMKSLASRSNEKLGQRFYGPRVHSSILTPENTELIQKSIYSLIFTLKNIENVSSDILGFTGDEATRKNLKLLIKSLSRLL*