Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0402890 | KEH33471.1 | 94.915 | 59 | 3 | 0 | 402 | 460 | 316 | 374 | 1.40e-22 | 111 |
Msa0402890 | KEH33471.1 | 96.508 | 315 | 10 | 1 | 1 | 315 | 1 | 314 | 0.0 | 618 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0402890 | sp|Q9LTR2|TGD2_ARATH | 66.667 | 324 | 95 | 3 | 1 | 315 | 1 | 320 | 5.48e-145 | 422 |
Msa0402890 | sp|Q9LTR2|TGD2_ARATH | 85.000 | 60 | 9 | 0 | 402 | 461 | 322 | 381 | 2.65e-24 | 107 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0402890 | A0A072UVP0 | 94.915 | 59 | 3 | 0 | 402 | 460 | 316 | 374 | 6.71e-23 | 111 |
Msa0402890 | A0A072UVP0 | 96.508 | 315 | 10 | 1 | 1 | 315 | 1 | 314 | 0.0 | 618 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0035050 | Msa0402890 | 0.809745 | 1.625445e-50 | -8.615850e-47 |
Msa0402890 | Msa1190510 | 0.802488 | 5.478076e-49 | -8.615850e-47 |
Msa0402890 | Msa1403840 | 0.800615 | 1.326098e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0402890 | MtrunA17_Chr3g0093291 | 96.508 | 315 | 10 | 1 | 1 | 315 | 1 | 314 | 0.0 | 618 |
Msa0402890 | MtrunA17_Chr3g0093291 | 91.667 | 60 | 5 | 0 | 402 | 461 | 316 | 375 | 4.88e-26 | 109 |
Msa0402890 | MtrunA17_Chr5g0441001 | 71.605 | 324 | 80 | 3 | 1 | 315 | 1 | 321 | 3.22e-167 | 476 |
Msa0402890 | MtrunA17_Chr5g0441001 | 76.667 | 60 | 14 | 0 | 402 | 461 | 323 | 382 | 1.90e-22 | 98.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0402890 | AT3G20320.1 | 66.667 | 324 | 95 | 3 | 1 | 315 | 1 | 320 | 5.57e-146 | 422 |
Msa0402890 | AT3G20320.1 | 85.000 | 60 | 9 | 0 | 402 | 461 | 322 | 381 | 2.69e-25 | 107 |
Msa0402890 | AT3G20320.3 | 64.336 | 286 | 89 | 3 | 1 | 277 | 1 | 282 | 1.41e-122 | 358 |
Msa0402890 | AT3G20320.2 | 64.336 | 286 | 89 | 3 | 1 | 277 | 1 | 282 | 1.41e-122 | 358 |
Find 156 sgRNAs with CRISPR-Local
Find 336 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCCGACCATTAACTGATTT+TGG | 0.114292 | 3_2:+31770990 | Msa0402890:CDS |
CTGAGCATATCCTTAATTTA+TGG | 0.117408 | 3_2:+31774579 | Msa0402890:three_prime_UTR |
CTTCTTCTTGATGAATTTAT+TGG | 0.132036 | 3_2:-31770837 | None:intergenic |
GTCCTACCTCAATGTTCTTC+AGG | 0.224980 | 3_2:-31774166 | None:intergenic |
TAATTCTATTGCAGTGGTTT+TGG | 0.246192 | 3_2:+31770938 | Msa0402890:CDS |
ACTTCAACCAACGAATTTCT+TGG | 0.259268 | 3_2:-31771290 | None:intergenic |
ATTAGAAAGGGATTCTATTC+TGG | 0.265330 | 3_2:+31772891 | Msa0402890:intron |
CCAATCAGAGAGTGTGATTT+AGG | 0.276570 | 3_2:-31770555 | None:intergenic |
ACTACGCTTCATTCAAAATA+AGG | 0.290814 | 3_2:-31774541 | None:intergenic |
GGTGAATATGAGAGAGTAAA+TGG | 0.300560 | 3_2:-31774144 | None:intergenic |
GTGTGATAGAGAAAAGATTA+AGG | 0.308390 | 3_2:+31771427 | Msa0402890:CDS |
TTGTTAAATAATAGTAATAA+TGG | 0.309422 | 3_2:+31770746 | Msa0402890:exon |
CCAAATCCAAAATCAGTTAA+TGG | 0.312281 | 3_2:-31770996 | None:intergenic |
TGGACATTCCCCGTGCCATT+TGG | 0.313226 | 3_2:+31770958 | Msa0402890:CDS |
ACAAGTTAAACCATAAATTA+AGG | 0.317207 | 3_2:-31774589 | None:intergenic |
TAACCAGTCAGGTCTTCTTA+TGG | 0.321768 | 3_2:+31771313 | Msa0402890:CDS |
CAGTTAATGGTCGGATAGTT+CGG | 0.321806 | 3_2:-31770983 | None:intergenic |
TGCTTGCAGCATCTAGATCT+TGG | 0.321938 | 3_2:+31772597 | Msa0402890:CDS |
TGAGAGAGTAAATGGACTTC+TGG | 0.323054 | 3_2:-31774136 | None:intergenic |
TGTTAATTAATATTAGAATA+GGG | 0.323609 | 3_2:+31772564 | Msa0402890:CDS |
TGGATCAGTTCAGTGTTCTC+AGG | 0.336084 | 3_2:-31774116 | None:intergenic |
TTCAAATACGATCCAAGTTC+AGG | 0.340476 | 3_2:+31771108 | Msa0402890:CDS |
GCTTGCAGCATCTAGATCTT+GGG | 0.343325 | 3_2:+31772598 | Msa0402890:CDS |
GATTTGGTGGTAGGACCATT+TGG | 0.345153 | 3_2:+31771012 | Msa0402890:CDS |
GCATTATGTTCTACTTCAAT+TGG | 0.346399 | 3_2:-31774380 | None:intergenic |
GGGTTACCAAGGGGTAAGTT+TGG | 0.348380 | 3_2:+31771448 | Msa0402890:CDS |
ATGTTAATTAATATTAGAAT+AGG | 0.349986 | 3_2:+31772563 | Msa0402890:CDS |
TGTCCTCCATCTGCAGAATT+AGG | 0.355239 | 3_2:-31770876 | None:intergenic |
TGAAGATCTTCAACCTTTGT+TGG | 0.369403 | 3_2:+31772388 | Msa0402890:CDS |
CACAAGCCTCTGATGATTTG+AGG | 0.370311 | 3_2:+31772468 | Msa0402890:CDS |
CTAAGTTCTGGTATTTCCTA+TGG | 0.371821 | 3_2:+31774484 | Msa0402890:three_prime_UTR |
GACCTTCTTTATGACATTCC+TGG | 0.376939 | 3_2:-31771397 | None:intergenic |
GGGCGAGATGTAGAGAAAAT+TGG | 0.395683 | 3_2:+31771500 | Msa0402890:CDS |
TATTGGAAGGGTTGTAATCA+TGG | 0.397412 | 3_2:-31770820 | None:intergenic |
AGGTGAAACTGTGTATTTGC+AGG | 0.403605 | 3_2:+31772999 | Msa0402890:CDS |
ACGTCTTCGATTTAAAATAT+AGG | 0.407083 | 3_2:-31774670 | None:intergenic |
TTGGGATATTTACCCGTCTT+GGG | 0.407743 | 3_2:+31771480 | Msa0402890:CDS |
CAGGCTTGTGGTATATCTAC+TGG | 0.421293 | 3_2:+31771158 | Msa0402890:CDS |
ATTTGCAGGCCCAACCTTGT+AGG | 0.424686 | 3_2:+31773013 | Msa0402890:CDS |
GTTGGGATATTTACCCGTCT+TGG | 0.425089 | 3_2:+31771479 | Msa0402890:CDS |
CATCAAGAAGAAGTATAAAC+AGG | 0.430962 | 3_2:+31770847 | Msa0402890:CDS |
CCTAAATCACACTCTCTGAT+TGG | 0.434743 | 3_2:+31770555 | Msa0402890:five_prime_UTR |
CACTACTCACAAAGTTGAAT+CGG | 0.435752 | 3_2:-31770719 | None:intergenic |
ATTTGGTGGTAGGACCATTT+GGG | 0.436304 | 3_2:+31771013 | Msa0402890:CDS |
TAGGTGTTAACGTAGGTAAA+AGG | 0.439237 | 3_2:-31774651 | None:intergenic |
TCATAGTCGATTCTAAGTTC+TGG | 0.443414 | 3_2:+31774472 | Msa0402890:three_prime_UTR |
TTGGCTGATGTCCGTGATAG+TGG | 0.446094 | 3_2:+31772407 | Msa0402890:CDS |
GGATCAGTTCAGTGTTCTCA+GGG | 0.455512 | 3_2:-31774115 | None:intergenic |
TAAGTTTGGATGCATTGGTT+GGG | 0.456549 | 3_2:+31771462 | Msa0402890:CDS |
TGCGGTATACTTCCTGAACT+TGG | 0.458322 | 3_2:-31771120 | None:intergenic |
ACTTAGTTTAGCGTGGTTGA+AGG | 0.462333 | 3_2:+31771082 | Msa0402890:CDS |
TTGGTTGAAGTTAACCAGTC+AGG | 0.464065 | 3_2:+31771302 | Msa0402890:CDS |
GATACTTGAGCTGCTGGTAA+AGG | 0.464822 | 3_2:-31770678 | None:intergenic |
AGGGGTAAGTTTGGATGCAT+TGG | 0.467114 | 3_2:+31771457 | Msa0402890:CDS |
TTCGGCTGGTCCGCTTGACC+AGG | 0.470194 | 3_2:+31771379 | Msa0402890:CDS |
TGTGATAGAGAAAAGATTAA+GGG | 0.472428 | 3_2:+31771428 | Msa0402890:CDS |
CTCTACATCTCGCCCAAGAC+GGG | 0.472927 | 3_2:-31771492 | None:intergenic |
AGACTTCATCCTACAAGGTT+GGG | 0.474219 | 3_2:-31773022 | None:intergenic |
TCCTACCTCAATGTTCTTCA+GGG | 0.479771 | 3_2:-31774165 | None:intergenic |
AATGATGAGATATGCAATGA+AGG | 0.480956 | 3_2:-31770777 | None:intergenic |
TAAATAATAGTAATAATGGT+TGG | 0.483450 | 3_2:+31770750 | Msa0402890:exon |
TGTAATCATGGATGAAGATA+AGG | 0.484239 | 3_2:-31770808 | None:intergenic |
CATCACACCTTTGTAAGAAG+TGG | 0.486944 | 3_2:-31771581 | None:intergenic |
TTCATCAACCACAACCTTGA+GGG | 0.489402 | 3_2:+31774426 | Msa0402890:three_prime_UTR |
GGTAGGACCATTTGGGAAGG+TGG | 0.490797 | 3_2:+31771020 | Msa0402890:CDS |
TGTTGCCAACAGTTATTCAT+TGG | 0.493544 | 3_2:+31771523 | Msa0402890:CDS |
GTAAGTTTGGATGCATTGGT+TGG | 0.499526 | 3_2:+31771461 | Msa0402890:CDS |
AACAGAATGGGGCATGGAGG+AGG | 0.500633 | 3_2:-31770506 | None:intergenic |
TCCAACACCACCTTCCCAAA+TGG | 0.501139 | 3_2:-31771027 | None:intergenic |
GTCTGGTGTCTGACATGTGC+TGG | 0.501519 | 3_2:+31774693 | Msa0402890:three_prime_UTR |
AATCATACCAAGAAATTCGT+TGG | 0.503094 | 3_2:+31771283 | Msa0402890:CDS |
AGATCCCATTCCAACACCTT+CGG | 0.505106 | 3_2:+31771361 | Msa0402890:CDS |
GTTAATTAATATTAGAATAG+GGG | 0.505963 | 3_2:+31772565 | Msa0402890:CDS |
CCAGCCGAAGGTGTTGGAAT+GGG | 0.508212 | 3_2:-31771365 | None:intergenic |
ACCATTTGGGAAGGTGGTGT+TGG | 0.510657 | 3_2:+31771026 | Msa0402890:CDS |
CCGTGTGTGTGCAACAGAAT+GGG | 0.511361 | 3_2:-31770518 | None:intergenic |
ACCAGCCGAAGGTGTTGGAA+TGG | 0.513068 | 3_2:-31771366 | None:intergenic |
GAGACTTCATCCTACAAGGT+TGG | 0.514100 | 3_2:-31773023 | None:intergenic |
TGAAGAGATACTTGAGCTGC+TGG | 0.522206 | 3_2:-31770684 | None:intergenic |
TACTAATCAAGTCTCTCAGC+AGG | 0.524421 | 3_2:+31774339 | Msa0402890:CDS |
AATCATCAGAGGCTTGTGTA+AGG | 0.524998 | 3_2:-31772463 | None:intergenic |
CTTAGTTTAGCGTGGTTGAA+GGG | 0.526781 | 3_2:+31771083 | Msa0402890:CDS |
TCGGATAGTTCGGGTCCAAA+TGG | 0.527376 | 3_2:-31770973 | None:intergenic |
TCCGTGTGTGTGCAACAGAA+TGG | 0.528683 | 3_2:-31770519 | None:intergenic |
TCTTGATGAATTTATTGGAA+GGG | 0.529697 | 3_2:-31770832 | None:intergenic |
AGGGAAGTCGAAGTTAGAGT+AGG | 0.534099 | 3_2:+31772979 | Msa0402890:CDS |
AGTTAATGGTCGGATAGTTC+GGG | 0.538129 | 3_2:-31770982 | None:intergenic |
CCCATTCCAACACCTTCGGC+TGG | 0.538502 | 3_2:+31771365 | Msa0402890:CDS |
TTCTTGATGAATTTATTGGA+AGG | 0.539160 | 3_2:-31770833 | None:intergenic |
AGCGGACCAGCCGAAGGTGT+TGG | 0.540792 | 3_2:-31771371 | None:intergenic |
CCGTGATAGTGGCTTGTTGA+AGG | 0.541286 | 3_2:+31772418 | Msa0402890:CDS |
AAAACAAAAGAGGGCCAACC+GGG | 0.548860 | 3_2:-31770461 | None:intergenic |
CCCATTCTGTTGCACACACA+CGG | 0.549537 | 3_2:+31770518 | Msa0402890:five_prime_UTR |
ATAAGACCTAATTCTGCAGA+TGG | 0.553495 | 3_2:+31770870 | Msa0402890:CDS |
AGTTCGGGTCCAAATGGCAC+GGG | 0.554374 | 3_2:-31770967 | None:intergenic |
GGAAAGTTAAATATTTATCA+CGG | 0.555155 | 3_2:-31774520 | None:intergenic |
GAACGCCGGTGAGGATCAGA+GGG | 0.557415 | 3_2:+31771180 | Msa0402890:CDS |
GAAGAATAATTCTATTGCAG+TGG | 0.561053 | 3_2:+31770932 | Msa0402890:CDS |
ATGGATGAAGATAAGGAACT+AGG | 0.561995 | 3_2:-31770801 | None:intergenic |
CATGTCAGTGTCGTACTGCT+TGG | 0.562886 | 3_2:+31774783 | Msa0402890:three_prime_UTR |
CGGCAGAATGCAAGAACCAT+AGG | 0.563787 | 3_2:-31774500 | None:intergenic |
CTTGCAGCATCTAGATCTTG+GGG | 0.567792 | 3_2:+31772599 | Msa0402890:CDS |
GACCAGGAATGTCATAAAGA+AGG | 0.568613 | 3_2:+31771395 | Msa0402890:CDS |
TGGTCAAGCGGACCAGCCGA+AGG | 0.569435 | 3_2:-31771377 | None:intergenic |
TCATCAACCACAACCTTGAG+GGG | 0.572559 | 3_2:+31774427 | Msa0402890:three_prime_UTR |
ATGCATCCAAACTTACCCCT+TGG | 0.573447 | 3_2:-31771454 | None:intergenic |
ATCCAAAATCAGTTAATGGT+CGG | 0.575229 | 3_2:-31770992 | None:intergenic |
ATGATGAGATATGCAATGAA+GGG | 0.575761 | 3_2:-31770776 | None:intergenic |
GGAACGCCGGTGAGGATCAG+AGG | 0.578249 | 3_2:+31771179 | Msa0402890:CDS |
GAAAAGATTAAGGGTTACCA+AGG | 0.578824 | 3_2:+31771437 | Msa0402890:CDS |
TTATGACATTCCTGGTCAAG+CGG | 0.579839 | 3_2:-31771389 | None:intergenic |
TTCAGCCAATGAATAACTGT+TGG | 0.580371 | 3_2:-31771528 | None:intergenic |
TGGTATATCTACTGGAACGC+CGG | 0.580404 | 3_2:+31771166 | Msa0402890:CDS |
TCTCTACATCTCGCCCAAGA+CGG | 0.580799 | 3_2:-31771493 | None:intergenic |
GCAAGAGACTTCATCCTACA+AGG | 0.584544 | 3_2:-31773027 | None:intergenic |
AAGTGCGAAAAGAAGAGCAC+CGG | 0.586310 | 3_2:-31771063 | None:intergenic |
AGCCGCTCAAATGAAAAGCT+CGG | 0.587008 | 3_2:+31773051 | Msa0402890:CDS |
CATCAACCACAACCTTGAGG+GGG | 0.603138 | 3_2:+31774428 | Msa0402890:three_prime_UTR |
CAAATGAAAAGCTCGGTCAA+AGG | 0.605454 | 3_2:+31773058 | Msa0402890:CDS |
TTTCATCAACCACAACCTTG+AGG | 0.606172 | 3_2:+31774425 | Msa0402890:three_prime_UTR |
TAAAATATAGGTGTTAACGT+AGG | 0.607659 | 3_2:-31774658 | None:intergenic |
AGCTAAACCACTTCTTACAA+AGG | 0.607789 | 3_2:+31771574 | Msa0402890:CDS |
CTGAGAAAACTCAACTGTTG+CGG | 0.609762 | 3_2:-31771138 | None:intergenic |
GGTGTTGGAATGGGATCTCG+AGG | 0.611034 | 3_2:-31771356 | None:intergenic |
AGAAAGGGATTCTATTCTGG+AGG | 0.615725 | 3_2:+31772894 | Msa0402890:intron |
AAAAGATTAAGGGTTACCAA+GGG | 0.616488 | 3_2:+31771438 | Msa0402890:CDS |
AGACCTAATTCTGCAGATGG+AGG | 0.617322 | 3_2:+31770873 | Msa0402890:CDS |
AGGATCAGAGGGGTGACTGT+CGG | 0.623420 | 3_2:+31771191 | Msa0402890:CDS |
ATCAACCACAACCTTGAGGG+GGG | 0.627298 | 3_2:+31774429 | Msa0402890:three_prime_UTR |
TCTCCATAAGAAGACCTGAC+TGG | 0.628132 | 3_2:-31771316 | None:intergenic |
CCTTCAACAAGCCACTATCA+CGG | 0.628722 | 3_2:-31772418 | None:intergenic |
GGTGGTAGGACCATTTGGGA+AGG | 0.630327 | 3_2:+31771017 | Msa0402890:CDS |
GCTTCAATACTTCTTAACGA+AGG | 0.631329 | 3_2:-31771233 | None:intergenic |
TAGTTCGGGTCCAAATGGCA+CGG | 0.631375 | 3_2:-31770968 | None:intergenic |
TTTAGCTTCTTCAATAACAG+AGG | 0.634755 | 3_2:-31771558 | None:intergenic |
GTCACCCCTCTGATCCTCAC+CGG | 0.635631 | 3_2:-31771185 | None:intergenic |
TTAAGTGTAACAACATATGT+TGG | 0.644816 | 3_2:-31774725 | None:intergenic |
TGTTGGAATGGGATCTCGAG+GGG | 0.645401 | 3_2:-31771354 | None:intergenic |
CGTGTGTGTGCAACAGAATG+GGG | 0.646394 | 3_2:-31770517 | None:intergenic |
GTGTGCAACAGAATGGGGCA+TGG | 0.647779 | 3_2:-31770512 | None:intergenic |
AGGAAGTTGAGAATTTAACT+CGG | 0.650327 | 3_2:+31772438 | Msa0402890:CDS |
AGGTTGAAGATCTTCAGCCA+TGG | 0.653485 | 3_2:-31772381 | None:intergenic |
AATTAACCTCAAATCATCAG+AGG | 0.655914 | 3_2:-31772474 | None:intergenic |
ATTCACCCTGAAGAACATTG+AGG | 0.656518 | 3_2:+31774160 | Msa0402890:CDS |
TCTAGATGCTGCAAGCACAA+TGG | 0.658997 | 3_2:-31772591 | None:intergenic |
CGACACTGACATGTAGACAA+AGG | 0.661655 | 3_2:-31774773 | None:intergenic |
TATCTACTGGAACGCCGGTG+AGG | 0.672873 | 3_2:+31771171 | Msa0402890:CDS |
GTGTTGGAATGGGATCTCGA+GGG | 0.676861 | 3_2:-31771355 | None:intergenic |
TCACGGACATCAGCCAACAA+AGG | 0.679820 | 3_2:-31772401 | None:intergenic |
GATGATTCTGAAGCAGACGA+CGG | 0.684903 | 3_2:-31770909 | None:intergenic |
GATCAGTTCAGTGTTCTCAG+GGG | 0.695950 | 3_2:-31774114 | None:intergenic |
TGCAACAGAATGGGGCATGG+AGG | 0.696492 | 3_2:-31770509 | None:intergenic |
AAAGATTAAGGGTTACCAAG+GGG | 0.699349 | 3_2:+31771439 | Msa0402890:CDS |
GTTCGGGTCCAAATGGCACG+GGG | 0.707783 | 3_2:-31770966 | None:intergenic |
GATGTCTCAGATCAATGCCA+TGG | 0.710763 | 3_2:+31772364 | Msa0402890:intron |
AACGCCGGTGAGGATCAGAG+GGG | 0.788850 | 3_2:+31771181 | Msa0402890:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTGTTAAATAATAGTAATAA+TGG | + | chr3_2:31770746-31770765 | Msa0402890:exon | 10.0% |
!! | ATGTTAATTAATATTAGAAT+AGG | + | chr3_2:31772563-31772582 | Msa0402890:CDS | 10.0% |
!! | TGTTAATTAATATTAGAATA+GGG | + | chr3_2:31772564-31772583 | Msa0402890:CDS | 10.0% |
!!! | TAATAATAAGAATTTTGTTT+TGG | + | chr3_2:31774218-31774237 | Msa0402890:intron | 10.0% |
!! | TAAATAATAGTAATAATGGT+TGG | + | chr3_2:31770750-31770769 | Msa0402890:exon | 15.0% |
!! | GTTAATTAATATTAGAATAG+GGG | + | chr3_2:31772565-31772584 | Msa0402890:CDS | 15.0% |
!! | AATTGCTCATAAAATTTACA+TGG | + | chr3_2:31770637-31770656 | Msa0402890:intron | 20.0% |
!!! | AGCTCAATTTTCAAAATAAT+TGG | - | chr3_2:31771862-31771881 | None:intergenic | 20.0% |
!! | ATTTGAAAACAGAGAAATAA+TGG | - | chr3_2:31773455-31773474 | None:intergenic | 20.0% |
!! | TTCAATTATCTTCTGAATTA+AGG | - | chr3_2:31773947-31773966 | None:intergenic | 20.0% |
!! | GGAAAGTTAAATATTTATCA+CGG | - | chr3_2:31774523-31774542 | None:intergenic | 20.0% |
!! | ACAAGTTAAACCATAAATTA+AGG | - | chr3_2:31774592-31774611 | None:intergenic | 20.0% |
!!! | ACTTGTTTTTTTTTTTAGCA+TGG | + | chr3_2:31774606-31774625 | Msa0402890:three_prime_UTR | 20.0% |
! | TCTTGATGAATTTATTGGAA+GGG | - | chr3_2:31770835-31770854 | None:intergenic | 25.0% |
! | TTCTTGATGAATTTATTGGA+AGG | - | chr3_2:31770836-31770855 | None:intergenic | 25.0% |
! | CTTCTTCTTGATGAATTTAT+TGG | - | chr3_2:31770840-31770859 | None:intergenic | 25.0% |
! | TGTGATAGAGAAAAGATTAA+GGG | + | chr3_2:31771428-31771447 | Msa0402890:CDS | 25.0% |
! | ATATGTCAATAATCACATTC+AGG | + | chr3_2:31771912-31771931 | Msa0402890:intron | 25.0% |
!! | TACGAAAATAGGAATTTTTC+GGG | - | chr3_2:31771940-31771959 | None:intergenic | 25.0% |
!! | GTACGAAAATAGGAATTTTT+CGG | - | chr3_2:31771941-31771960 | None:intergenic | 25.0% |
!! | TAGCTTAAAAGTACGAAAAT+AGG | - | chr3_2:31771951-31771970 | None:intergenic | 25.0% |
!! | TTCGTACTTTTAAGCTATTA+TGG | + | chr3_2:31771954-31771973 | Msa0402890:intron | 25.0% |
!!! | TATCTTTAATTTGACATGCA+TGG | + | chr3_2:31772523-31772542 | Msa0402890:intron | 25.0% |
! | AAGTATAAATGTGCAATATG+TGG | + | chr3_2:31772858-31772877 | Msa0402890:intron | 25.0% |
! | AGGGGTAATATAATATAATG+TGG | + | chr3_2:31773293-31773312 | Msa0402890:intron | 25.0% |
! | GGGGTAATATAATATAATGT+GGG | + | chr3_2:31773294-31773313 | Msa0402890:intron | 25.0% |
! | TTAATACTGGAATGGTAAAA+TGG | - | chr3_2:31773398-31773417 | None:intergenic | 25.0% |
! | AAATGGAATTAATACTGGAA+TGG | - | chr3_2:31773406-31773425 | None:intergenic | 25.0% |
! | TAAGCAAATGGAATTAATAC+TGG | - | chr3_2:31773411-31773430 | None:intergenic | 25.0% |
! | TTAATTCCATTTGCTTAACT+CGG | + | chr3_2:31773414-31773433 | Msa0402890:intron | 25.0% |
! | TTAAAAAAACTCACTCAGAA+TGG | + | chr3_2:31773687-31773706 | Msa0402890:intron | 25.0% |
! | TTAACATTCTTGAACTAGAA+TGG | + | chr3_2:31774013-31774032 | Msa0402890:intron | 25.0% |
!!! | TATTCGCCATTTTAAGTTTA+TGG | - | chr3_2:31774191-31774210 | None:intergenic | 25.0% |
!!! | AATGTTAGCTCTGATATTTT+AGG | + | chr3_2:31774278-31774297 | Msa0402890:CDS | 25.0% |
!!! | TGTTTTTTTTTTTAGCATGG+AGG | + | chr3_2:31774609-31774628 | Msa0402890:three_prime_UTR | 25.0% |
! | TAAAATATAGGTGTTAACGT+AGG | - | chr3_2:31774661-31774680 | None:intergenic | 25.0% |
!! | ACGTCTTCGATTTAAAATAT+AGG | - | chr3_2:31774673-31774692 | None:intergenic | 25.0% |
! | TTAAGTGTAACAACATATGT+TGG | - | chr3_2:31774728-31774747 | None:intergenic | 25.0% |
!! | TTACATGGTTTTCGATTTGT+AGG | + | chr3_2:31770652-31770671 | Msa0402890:intron | 30.0% |
!! | TACATGGTTTTCGATTTGTA+GGG | + | chr3_2:31770653-31770672 | Msa0402890:intron | 30.0% |
ATGATGAGATATGCAATGAA+GGG | - | chr3_2:31770779-31770798 | None:intergenic | 30.0% | |
AATGATGAGATATGCAATGA+AGG | - | chr3_2:31770780-31770799 | None:intergenic | 30.0% | |
TGTAATCATGGATGAAGATA+AGG | - | chr3_2:31770811-31770830 | None:intergenic | 30.0% | |
! | CATCAAGAAGAAGTATAAAC+AGG | + | chr3_2:31770847-31770866 | Msa0402890:CDS | 30.0% |
GAAGAATAATTCTATTGCAG+TGG | + | chr3_2:31770932-31770951 | Msa0402890:CDS | 30.0% | |
! | TAATTCTATTGCAGTGGTTT+TGG | + | chr3_2:31770938-31770957 | Msa0402890:CDS | 30.0% |
ATCCAAAATCAGTTAATGGT+CGG | - | chr3_2:31770995-31771014 | None:intergenic | 30.0% | |
CCAAATCCAAAATCAGTTAA+TGG | - | chr3_2:31770999-31771018 | None:intergenic | 30.0% | |
!! | CCATTAACTGATTTTGGATT+TGG | + | chr3_2:31770996-31771015 | Msa0402890:CDS | 30.0% |
!! | TTAACTGATTTTGGATTTGG+TGG | + | chr3_2:31770999-31771018 | Msa0402890:CDS | 30.0% |
AATCATACCAAGAAATTCGT+TGG | + | chr3_2:31771283-31771302 | Msa0402890:CDS | 30.0% | |
GTGTGATAGAGAAAAGATTA+AGG | + | chr3_2:31771427-31771446 | Msa0402890:CDS | 30.0% | |
AAAAGATTAAGGGTTACCAA+GGG | + | chr3_2:31771438-31771457 | Msa0402890:CDS | 30.0% | |
! | TTTAGCTTCTTCAATAACAG+AGG | - | chr3_2:31771561-31771580 | None:intergenic | 30.0% |
ATTGCCAATTACTAACTTGA+CGG | + | chr3_2:31771676-31771695 | Msa0402890:intron | 30.0% | |
TAATCAACAAACTTGACACA+TGG | + | chr3_2:31771884-31771903 | Msa0402890:intron | 30.0% | |
TTCAAGAGAATGGTAAAAAG+AGG | - | chr3_2:31772012-31772031 | None:intergenic | 30.0% | |
AAACTCTTGTGGACATATTA+TGG | + | chr3_2:31772108-31772127 | Msa0402890:intron | 30.0% | |
AGGAAGTTGAGAATTTAACT+CGG | + | chr3_2:31772438-31772457 | Msa0402890:CDS | 30.0% | |
AATTAACCTCAAATCATCAG+AGG | - | chr3_2:31772477-31772496 | None:intergenic | 30.0% | |
ATAAAAAACAAGAGCTAGAG+AGG | - | chr3_2:31772506-31772525 | None:intergenic | 30.0% | |
! | TGGATCAATTGCTATTAGAA+AGG | + | chr3_2:31772878-31772897 | Msa0402890:intron | 30.0% |
! | GGATCAATTGCTATTAGAAA+GGG | + | chr3_2:31772879-31772898 | Msa0402890:intron | 30.0% |
ATTAGAAAGGGATTCTATTC+TGG | + | chr3_2:31772891-31772910 | Msa0402890:intron | 30.0% | |
TATCCTTTCTATTTCCAATC+TGG | + | chr3_2:31773354-31773373 | Msa0402890:intron | 30.0% | |
CCTTTATAACTACCTCAATT+CGG | - | chr3_2:31773771-31773790 | None:intergenic | 30.0% | |
CGAATTGAGGTAGTTATAAA+GGG | + | chr3_2:31773769-31773788 | Msa0402890:intron | 30.0% | |
TTCTTAACAATAAGAACCAC+TGG | + | chr3_2:31773853-31773872 | Msa0402890:intron | 30.0% | |
!!! | TCTGAATTTTGAAATTCCAG+TGG | - | chr3_2:31773872-31773891 | None:intergenic | 30.0% |
CTGGAATTTCAAAATTCAGA+AGG | + | chr3_2:31773872-31773891 | Msa0402890:intron | 30.0% | |
GTAGGACCATAAACTTAAAA+TGG | + | chr3_2:31774182-31774201 | Msa0402890:intron | 30.0% | |
GCATTATGTTCTACTTCAAT+TGG | - | chr3_2:31774383-31774402 | None:intergenic | 30.0% | |
!! | TGTGGTTGATGAAAAAACAT+TGG | - | chr3_2:31774419-31774438 | None:intergenic | 30.0% |
ACTACGCTTCATTCAAAATA+AGG | - | chr3_2:31774544-31774563 | None:intergenic | 30.0% | |
CTGAGCATATCCTTAATTTA+TGG | + | chr3_2:31774579-31774598 | Msa0402890:three_prime_UTR | 30.0% | |
! | TTAAGTGCTCGTTTTATCTA+AGG | - | chr3_2:31774828-31774847 | None:intergenic | 30.0% |
ACCAAGGGAAAAACAAAAGA+GGG | - | chr3_2:31770473-31770492 | None:intergenic | 35.0% | |
ACAAGAAGAAGATTACTCAC+TGG | - | chr3_2:31770594-31770613 | None:intergenic | 35.0% | |
AGCAATTAGTGCATGATGAA+TGG | - | chr3_2:31770624-31770643 | None:intergenic | 35.0% | |
CACTACTCACAAAGTTGAAT+CGG | - | chr3_2:31770722-31770741 | None:intergenic | 35.0% | |
ATGGATGAAGATAAGGAACT+AGG | - | chr3_2:31770804-31770823 | None:intergenic | 35.0% | |
TATTGGAAGGGTTGTAATCA+TGG | - | chr3_2:31770823-31770842 | None:intergenic | 35.0% | |
ATAAGACCTAATTCTGCAGA+TGG | + | chr3_2:31770870-31770889 | Msa0402890:CDS | 35.0% | |
!! | ATCCGACCATTAACTGATTT+TGG | + | chr3_2:31770990-31771009 | Msa0402890:CDS | 35.0% |
!!! | GTTGGACTGTTTTTAGTTTC+CGG | + | chr3_2:31771044-31771063 | Msa0402890:CDS | 35.0% |
TTCAAATACGATCCAAGTTC+AGG | + | chr3_2:31771108-31771127 | Msa0402890:CDS | 35.0% | |
GCTTCAATACTTCTTAACGA+AGG | - | chr3_2:31771236-31771255 | None:intergenic | 35.0% | |
ACTTCAACCAACGAATTTCT+TGG | - | chr3_2:31771293-31771312 | None:intergenic | 35.0% | |
GAAAAGATTAAGGGTTACCA+AGG | + | chr3_2:31771437-31771456 | Msa0402890:CDS | 35.0% | |
AAAGATTAAGGGTTACCAAG+GGG | + | chr3_2:31771439-31771458 | Msa0402890:CDS | 35.0% | |
!! | TAAGTTTGGATGCATTGGTT+GGG | + | chr3_2:31771462-31771481 | Msa0402890:CDS | 35.0% |
TGTTGCCAACAGTTATTCAT+TGG | + | chr3_2:31771523-31771542 | Msa0402890:CDS | 35.0% | |
TTCAGCCAATGAATAACTGT+TGG | - | chr3_2:31771531-31771550 | None:intergenic | 35.0% | |
AGCTAAACCACTTCTTACAA+AGG | + | chr3_2:31771574-31771593 | Msa0402890:CDS | 35.0% | |
GATTCAACAGTCTATTCTAG+AGG | - | chr3_2:31771646-31771665 | None:intergenic | 35.0% | |
CGTTTCTGCTGTTATATTGT+TGG | + | chr3_2:31771800-31771819 | Msa0402890:intron | 35.0% | |
GGCAATTATGCTCAAATGTT+TGG | - | chr3_2:31771841-31771860 | None:intergenic | 35.0% | |
TCACTTCATTCAAACTCTTG+TGG | + | chr3_2:31772097-31772116 | Msa0402890:intron | 35.0% | |
CTACAGCAATGGGAAAATAT+GGG | - | chr3_2:31772343-31772362 | None:intergenic | 35.0% | |
ACTACAGCAATGGGAAAATA+TGG | - | chr3_2:31772344-31772363 | None:intergenic | 35.0% | |
TGAAGATCTTCAACCTTTGT+TGG | + | chr3_2:31772388-31772407 | Msa0402890:CDS | 35.0% | |
ATTTGACATGCATGGATATG+TGG | + | chr3_2:31772531-31772550 | Msa0402890:intron | 35.0% | |
! | TTTTCACCTTCATCTGCAAA+TGG | + | chr3_2:31772692-31772711 | Msa0402890:intron | 35.0% |
! | TGTGATGGGATTCTATTATC+CGG | - | chr3_2:31772740-31772759 | None:intergenic | 35.0% |
AGTGGATGAAATAGATGACA+TGG | + | chr3_2:31772787-31772806 | Msa0402890:intron | 35.0% | |
GTGGATGAAATAGATGACAT+GGG | + | chr3_2:31772788-31772807 | Msa0402890:intron | 35.0% | |
TTATACTTGATCATTGCGAG+AGG | - | chr3_2:31772832-31772851 | None:intergenic | 35.0% | |
! | ACTTCCCTCTTTTTGTAATC+TGG | - | chr3_2:31772967-31772986 | None:intergenic | 35.0% |
GGAAAAAGACGAGAGATATA+GGG | + | chr3_2:31773274-31773293 | Msa0402890:intron | 35.0% | |
GAAAAAGACGAGAGATATAG+GGG | + | chr3_2:31773275-31773294 | Msa0402890:intron | 35.0% | |
CTTCCAGATTGGAAATAGAA+AGG | - | chr3_2:31773360-31773379 | None:intergenic | 35.0% | |
CTTTCTATTTCCAATCTGGA+AGG | + | chr3_2:31773358-31773377 | Msa0402890:intron | 35.0% | |
AGAATTCCGAGTTAAGCAAA+TGG | - | chr3_2:31773423-31773442 | None:intergenic | 35.0% | |
AGACTTAGTACACAAGTGTT+GGG | - | chr3_2:31773496-31773515 | None:intergenic | 35.0% | |
TAGACTTAGTACACAAGTGT+TGG | - | chr3_2:31773497-31773516 | None:intergenic | 35.0% | |
! | CTCTCAAGTTTGACAGTTTT+AGG | + | chr3_2:31773583-31773602 | Msa0402890:intron | 35.0% |
GAGAGAAAATGATAAACCCA+TGG | + | chr3_2:31773631-31773650 | Msa0402890:intron | 35.0% | |
AATGATAAACCCATGGTTGT+TGG | + | chr3_2:31773638-31773657 | Msa0402890:intron | 35.0% | |
CCGAATTGAGGTAGTTATAA+AGG | + | chr3_2:31773768-31773787 | Msa0402890:intron | 35.0% | |
TCATCTAATGCTTATGCAGA+AGG | + | chr3_2:31774072-31774091 | Msa0402890:intron | 35.0% | |
CATCTAATGCTTATGCAGAA+GGG | + | chr3_2:31774073-31774092 | Msa0402890:intron | 35.0% | |
GGTGAATATGAGAGAGTAAA+TGG | - | chr3_2:31774147-31774166 | None:intergenic | 35.0% | |
!! | TCTGATATTTTAGGCTTCAC+TGG | + | chr3_2:31774287-31774306 | Msa0402890:CDS | 35.0% |
! | TCATAGTCGATTCTAAGTTC+TGG | + | chr3_2:31774472-31774491 | Msa0402890:three_prime_UTR | 35.0% |
! | CTAAGTTCTGGTATTTCCTA+TGG | + | chr3_2:31774484-31774503 | Msa0402890:three_prime_UTR | 35.0% |
TAGGTGTTAACGTAGGTAAA+AGG | - | chr3_2:31774654-31774673 | None:intergenic | 35.0% | |
! | TTTTAAATCGAAGACGTGTC+TGG | + | chr3_2:31774676-31774695 | Msa0402890:three_prime_UTR | 35.0% |
AAAAACAAAAGAGGGCCAAC+CGG | - | chr3_2:31770465-31770484 | None:intergenic | 40.0% | |
GACCAAGGGAAAAACAAAAG+AGG | - | chr3_2:31770474-31770493 | None:intergenic | 40.0% | |
! | CCAATCAGAGAGTGTGATTT+AGG | - | chr3_2:31770558-31770577 | None:intergenic | 40.0% |
CCTAAATCACACTCTCTGAT+TGG | + | chr3_2:31770555-31770574 | Msa0402890:five_prime_UTR | 40.0% | |
AGTTAATGGTCGGATAGTTC+GGG | - | chr3_2:31770985-31771004 | None:intergenic | 40.0% | |
CAGTTAATGGTCGGATAGTT+CGG | - | chr3_2:31770986-31771005 | None:intergenic | 40.0% | |
!!! | CTGATTTTGGATTTGGTGGT+AGG | + | chr3_2:31771003-31771022 | Msa0402890:CDS | 40.0% |
! | ATTTGGTGGTAGGACCATTT+GGG | + | chr3_2:31771013-31771032 | Msa0402890:CDS | 40.0% |
! | TTTTCGCACTTAGTTTAGCG+TGG | + | chr3_2:31771075-31771094 | Msa0402890:CDS | 40.0% |
ACTTAGTTTAGCGTGGTTGA+AGG | + | chr3_2:31771082-31771101 | Msa0402890:CDS | 40.0% | |
CTTAGTTTAGCGTGGTTGAA+GGG | + | chr3_2:31771083-31771102 | Msa0402890:CDS | 40.0% | |
CTGAGAAAACTCAACTGTTG+CGG | - | chr3_2:31771141-31771160 | None:intergenic | 40.0% | |
TTGGTTGAAGTTAACCAGTC+AGG | + | chr3_2:31771302-31771321 | Msa0402890:CDS | 40.0% | |
TAACCAGTCAGGTCTTCTTA+TGG | + | chr3_2:31771313-31771332 | Msa0402890:CDS | 40.0% | |
TTATGACATTCCTGGTCAAG+CGG | - | chr3_2:31771392-31771411 | None:intergenic | 40.0% | |
GACCAGGAATGTCATAAAGA+AGG | + | chr3_2:31771395-31771414 | Msa0402890:CDS | 40.0% | |
GACCTTCTTTATGACATTCC+TGG | - | chr3_2:31771400-31771419 | None:intergenic | 40.0% | |
! | GTAAGTTTGGATGCATTGGT+TGG | + | chr3_2:31771461-31771480 | Msa0402890:CDS | 40.0% |
TTGGGATATTTACCCGTCTT+GGG | + | chr3_2:31771480-31771499 | Msa0402890:CDS | 40.0% | |
CATCACACCTTTGTAAGAAG+TGG | - | chr3_2:31771584-31771603 | None:intergenic | 40.0% | |
GCAACCGTCAAGTTAGTAAT+TGG | - | chr3_2:31771683-31771702 | None:intergenic | 40.0% | |
ACCATTCTCTTGAAGCATAG+TGG | + | chr3_2:31772018-31772037 | Msa0402890:intron | 40.0% | |
TCCACTATGCTTCAAGAGAA+TGG | - | chr3_2:31772022-31772041 | None:intergenic | 40.0% | |
AACACTTGTTCTGACATCAG+AGG | - | chr3_2:31772254-31772273 | None:intergenic | 40.0% | |
CTGATGTCAGAACAAGTGTT+TGG | + | chr3_2:31772254-31772273 | Msa0402890:intron | 40.0% | |
TGAGACATCACTACAGCAAT+GGG | - | chr3_2:31772353-31772372 | None:intergenic | 40.0% | |
AATCATCAGAGGCTTGTGTA+AGG | - | chr3_2:31772466-31772485 | None:intergenic | 40.0% | |
!! | ATGAGGAGTATCGACAGTTA+AGG | + | chr3_2:31772632-31772651 | Msa0402890:intron | 40.0% |
TATCGACAGTTAAGGTGGTA+AGG | + | chr3_2:31772640-31772659 | Msa0402890:intron | 40.0% | |
ATCGACAGTTAAGGTGGTAA+GGG | + | chr3_2:31772641-31772660 | Msa0402890:intron | 40.0% | |
GGATAATAGAATCCCATCAC+AGG | + | chr3_2:31772739-31772758 | Msa0402890:intron | 40.0% | |
CATCTATTTCATCCACTGCT+TGG | - | chr3_2:31772784-31772803 | None:intergenic | 40.0% | |
AGAAAGGGATTCTATTCTGG+AGG | + | chr3_2:31772894-31772913 | Msa0402890:intron | 40.0% | |
TGCAGCCAGATTACAAAAAG+AGG | + | chr3_2:31772959-31772978 | Msa0402890:CDS | 40.0% | |
GCAGCCAGATTACAAAAAGA+GGG | + | chr3_2:31772960-31772979 | Msa0402890:CDS | 40.0% | |
AGGTGAAACTGTGTATTTGC+AGG | + | chr3_2:31772999-31773018 | Msa0402890:CDS | 40.0% | |
AGACTTCATCCTACAAGGTT+GGG | - | chr3_2:31773025-31773044 | None:intergenic | 40.0% | |
CAAATGAAAAGCTCGGTCAA+AGG | + | chr3_2:31773058-31773077 | Msa0402890:CDS | 40.0% | |
! | AAGCTCGGTCAAAGGTTTTA+TGG | + | chr3_2:31773066-31773085 | Msa0402890:CDS | 40.0% |
CGTGCAATATGAATGACTGA+AGG | + | chr3_2:31773187-31773206 | Msa0402890:intron | 40.0% | |
GCAATATGAATGACTGAAGG+AGG | + | chr3_2:31773190-31773209 | Msa0402890:intron | 40.0% | |
GGAGGAATAACAGAATTGAC+AGG | + | chr3_2:31773208-31773227 | Msa0402890:intron | 40.0% | |
GGGAAAAAGACGAGAGATAT+AGG | + | chr3_2:31773273-31773292 | Msa0402890:intron | 40.0% | |
AGAGCTGAGAATTGTGGTAT+CGG | + | chr3_2:31773318-31773337 | Msa0402890:intron | 40.0% | |
ACTGGAATGGTAAAATGGTC+TGG | - | chr3_2:31773393-31773412 | None:intergenic | 40.0% | |
TTGCTTAACTCGGAATTCTC+AGG | + | chr3_2:31773424-31773443 | Msa0402890:intron | 40.0% | |
TGCTTAACTCGGAATTCTCA+GGG | + | chr3_2:31773425-31773444 | Msa0402890:intron | 40.0% | |
ACTCTTACGAGTAAGCTATG+TGG | + | chr3_2:31773538-31773557 | Msa0402890:intron | 40.0% | |
CTGCACAATAACAGAATGCA+TGG | + | chr3_2:31773711-31773730 | Msa0402890:intron | 40.0% | |
ATCACTCACCAATCCCAAAA+TGG | - | chr3_2:31773744-31773763 | None:intergenic | 40.0% | |
! | TGAGAGAGTAAATGGACTTC+TGG | - | chr3_2:31774139-31774158 | None:intergenic | 40.0% |
ATTCACCCTGAAGAACATTG+AGG | + | chr3_2:31774160-31774179 | Msa0402890:CDS | 40.0% | |
TCCTACCTCAATGTTCTTCA+GGG | - | chr3_2:31774168-31774187 | None:intergenic | 40.0% | |
TACTAATCAAGTCTCTCAGC+AGG | + | chr3_2:31774339-31774358 | Msa0402890:CDS | 40.0% | |
TTTCATCAACCACAACCTTG+AGG | + | chr3_2:31774425-31774444 | Msa0402890:three_prime_UTR | 40.0% | |
TTCATCAACCACAACCTTGA+GGG | + | chr3_2:31774426-31774445 | Msa0402890:three_prime_UTR | 40.0% | |
AAAACAAAAGAGGGCCAACC+GGG | - | chr3_2:31770464-31770483 | None:intergenic | 45.0% | |
!!! | GCCCTCTTTTGTTTTTCCCT+TGG | + | chr3_2:31770469-31770488 | Msa0402890:five_prime_UTR | 45.0% |
GATACTTGAGCTGCTGGTAA+AGG | - | chr3_2:31770681-31770700 | None:intergenic | 45.0% | |
TGAAGAGATACTTGAGCTGC+TGG | - | chr3_2:31770687-31770706 | None:intergenic | 45.0% | |
AGACCTAATTCTGCAGATGG+AGG | + | chr3_2:31770873-31770892 | Msa0402890:CDS | 45.0% | |
TGTCCTCCATCTGCAGAATT+AGG | - | chr3_2:31770879-31770898 | None:intergenic | 45.0% | |
!! | GATGATTCTGAAGCAGACGA+CGG | - | chr3_2:31770912-31770931 | None:intergenic | 45.0% |
!! | GATTTGGTGGTAGGACCATT+TGG | + | chr3_2:31771012-31771031 | Msa0402890:CDS | 45.0% |
! | AAGTGCGAAAAGAAGAGCAC+CGG | - | chr3_2:31771066-31771085 | None:intergenic | 45.0% |
TGCGGTATACTTCCTGAACT+TGG | - | chr3_2:31771123-31771142 | None:intergenic | 45.0% | |
! | CGCAACAGTTGAGTTTTCTC+AGG | + | chr3_2:31771139-31771158 | Msa0402890:CDS | 45.0% |
! | GTTGAGTTTTCTCAGGCTTG+TGG | + | chr3_2:31771146-31771165 | Msa0402890:CDS | 45.0% |
CAGGCTTGTGGTATATCTAC+TGG | + | chr3_2:31771158-31771177 | Msa0402890:CDS | 45.0% | |
TGGTATATCTACTGGAACGC+CGG | + | chr3_2:31771166-31771185 | Msa0402890:CDS | 45.0% | |
TCTCCATAAGAAGACCTGAC+TGG | - | chr3_2:31771319-31771338 | None:intergenic | 45.0% | |
AGATCCCATTCCAACACCTT+CGG | + | chr3_2:31771361-31771380 | Msa0402890:CDS | 45.0% | |
ATGCATCCAAACTTACCCCT+TGG | - | chr3_2:31771457-31771476 | None:intergenic | 45.0% | |
AGGGGTAAGTTTGGATGCAT+TGG | + | chr3_2:31771457-31771476 | Msa0402890:CDS | 45.0% | |
GTTGGGATATTTACCCGTCT+TGG | + | chr3_2:31771479-31771498 | Msa0402890:CDS | 45.0% | |
GGGCGAGATGTAGAGAAAAT+TGG | + | chr3_2:31771500-31771519 | Msa0402890:CDS | 45.0% | |
CTGAGACATCACTACAGCAA+TGG | - | chr3_2:31772354-31772373 | None:intergenic | 45.0% | |
GATGTCTCAGATCAATGCCA+TGG | + | chr3_2:31772364-31772383 | Msa0402890:intron | 45.0% | |
AGGTTGAAGATCTTCAGCCA+TGG | - | chr3_2:31772384-31772403 | None:intergenic | 45.0% | |
CCTTCAACAAGCCACTATCA+CGG | - | chr3_2:31772421-31772440 | None:intergenic | 45.0% | |
CACAAGCCTCTGATGATTTG+AGG | + | chr3_2:31772468-31772487 | Msa0402890:CDS | 45.0% | |
TCTAGATGCTGCAAGCACAA+TGG | - | chr3_2:31772594-31772613 | None:intergenic | 45.0% | |
TGCTTGCAGCATCTAGATCT+TGG | + | chr3_2:31772597-31772616 | Msa0402890:CDS | 45.0% | |
GCTTGCAGCATCTAGATCTT+GGG | + | chr3_2:31772598-31772617 | Msa0402890:CDS | 45.0% | |
CTTGCAGCATCTAGATCTTG+GGG | + | chr3_2:31772599-31772618 | Msa0402890:CDS | 45.0% | |
ACTGTCGATACTCCTCATTC+AGG | - | chr3_2:31772630-31772649 | None:intergenic | 45.0% | |
!! | AGGAGTATCGACAGTTAAGG+TGG | + | chr3_2:31772635-31772654 | Msa0402890:intron | 45.0% |
CACCTTCATCTGCAAATGGA+CGG | + | chr3_2:31772696-31772715 | Msa0402890:intron | 45.0% | |
GCAAAACAGTGGTGACATAC+CGG | + | chr3_2:31772718-31772737 | Msa0402890:intron | 45.0% | |
ATTCACCAGACACCTGTGAT+GGG | - | chr3_2:31772754-31772773 | None:intergenic | 45.0% | |
AGGGAAGTCGAAGTTAGAGT+AGG | + | chr3_2:31772979-31772998 | Msa0402890:CDS | 45.0% | |
GAGACTTCATCCTACAAGGT+TGG | - | chr3_2:31773026-31773045 | None:intergenic | 45.0% | |
GCAAGAGACTTCATCCTACA+AGG | - | chr3_2:31773030-31773049 | None:intergenic | 45.0% | |
AGCCGCTCAAATGAAAAGCT+CGG | + | chr3_2:31773051-31773070 | Msa0402890:CDS | 45.0% | |
! | GACCGAGCTTTTCATTTGAG+CGG | - | chr3_2:31773056-31773075 | None:intergenic | 45.0% |
! | GTTTTATGGTCCGTATGCGT+GGG | + | chr3_2:31773080-31773099 | Msa0402890:intron | 45.0% |
! | TTTTATGGTCCGTATGCGTG+GGG | + | chr3_2:31773081-31773100 | Msa0402890:intron | 45.0% |
CATTCTTGGGCCCATTCTAT+TGG | - | chr3_2:31773159-31773178 | None:intergenic | 45.0% | |
GCACGCAAGTTCACATTCTT+GGG | - | chr3_2:31773172-31773191 | None:intergenic | 45.0% | |
TGCACGCAAGTTCACATTCT+TGG | - | chr3_2:31773173-31773192 | None:intergenic | 45.0% | |
GAATTGACAGGTGACCATCA+TGG | + | chr3_2:31773220-31773239 | Msa0402890:intron | 45.0% | |
!! | GACCATCATGGATTGGACAA+AGG | + | chr3_2:31773232-31773251 | Msa0402890:intron | 45.0% |
CTCCTTTGTCCAATCCATGA+TGG | - | chr3_2:31773237-31773256 | None:intergenic | 45.0% | |
!! | CATCATGGATTGGACAAAGG+AGG | + | chr3_2:31773235-31773254 | Msa0402890:intron | 45.0% |
!! | GAATTGTGGTATCGGTCTCT+AGG | + | chr3_2:31773326-31773345 | Msa0402890:intron | 45.0% |
! | TGGTAAAATGGTCTGGAGCT+AGG | - | chr3_2:31773386-31773405 | None:intergenic | 45.0% |
AGGTGTGTGTGCACAAAAGA+AGG | + | chr3_2:31773603-31773622 | Msa0402890:intron | 45.0% | |
GGTGTGTGTGCACAAAAGAA+GGG | + | chr3_2:31773604-31773623 | Msa0402890:intron | 45.0% | |
GTGTGTGTGCACAAAAGAAG+GGG | + | chr3_2:31773605-31773624 | Msa0402890:intron | 45.0% | |
CTCTACTCTCCAACAACCAT+GGG | - | chr3_2:31773650-31773669 | None:intergenic | 45.0% | |
TCTCTACTCTCCAACAACCA+TGG | - | chr3_2:31773651-31773670 | None:intergenic | 45.0% | |
GTTGTTGGAGAGTAGAGACT+AGG | + | chr3_2:31773653-31773672 | Msa0402890:intron | 45.0% | |
!!! | TGCATGGACAAGTGCCATTT+TGG | + | chr3_2:31773727-31773746 | Msa0402890:intron | 45.0% |
!!! | GCATGGACAAGTGCCATTTT+GGG | + | chr3_2:31773728-31773747 | Msa0402890:intron | 45.0% |
!!! | GACAAGTGCCATTTTGGGAT+TGG | + | chr3_2:31773733-31773752 | Msa0402890:intron | 45.0% |
! | TGAGTGATGATGCCGAATTG+AGG | + | chr3_2:31773756-31773775 | Msa0402890:intron | 45.0% |
GATCAGTTCAGTGTTCTCAG+GGG | - | chr3_2:31774117-31774136 | None:intergenic | 45.0% | |
GGATCAGTTCAGTGTTCTCA+GGG | - | chr3_2:31774118-31774137 | None:intergenic | 45.0% | |
TGGATCAGTTCAGTGTTCTC+AGG | - | chr3_2:31774119-31774138 | None:intergenic | 45.0% | |
ACCCTGAAGAACATTGAGGT+AGG | + | chr3_2:31774164-31774183 | Msa0402890:intron | 45.0% | |
GTCCTACCTCAATGTTCTTC+AGG | - | chr3_2:31774169-31774188 | None:intergenic | 45.0% | |
TCATCAACCACAACCTTGAG+GGG | + | chr3_2:31774427-31774446 | Msa0402890:three_prime_UTR | 45.0% | |
! | ATTACTGTTTTCCCCCCTCA+AGG | - | chr3_2:31774443-31774462 | None:intergenic | 45.0% |
CGACACTGACATGTAGACAA+AGG | - | chr3_2:31774776-31774795 | None:intergenic | 45.0% | |
GGAGAGAGAGAGAAGACCAA+GGG | - | chr3_2:31770488-31770507 | None:intergenic | 50.0% | |
AGGAGAGAGAGAGAAGACCA+AGG | - | chr3_2:31770489-31770508 | None:intergenic | 50.0% | |
CGTGTGTGTGCAACAGAATG+GGG | - | chr3_2:31770520-31770539 | None:intergenic | 50.0% | |
CCGTGTGTGTGCAACAGAAT+GGG | - | chr3_2:31770521-31770540 | None:intergenic | 50.0% | |
CCCATTCTGTTGCACACACA+CGG | + | chr3_2:31770518-31770537 | Msa0402890:five_prime_UTR | 50.0% | |
TCCGTGTGTGTGCAACAGAA+TGG | - | chr3_2:31770522-31770541 | None:intergenic | 50.0% | |
TAGTTCGGGTCCAAATGGCA+CGG | - | chr3_2:31770971-31770990 | None:intergenic | 50.0% | |
TCGGATAGTTCGGGTCCAAA+TGG | - | chr3_2:31770976-31770995 | None:intergenic | 50.0% | |
ACCATTTGGGAAGGTGGTGT+TGG | + | chr3_2:31771026-31771045 | Msa0402890:CDS | 50.0% | |
TCCAACACCACCTTCCCAAA+TGG | - | chr3_2:31771030-31771049 | None:intergenic | 50.0% | |
TGTTGGAATGGGATCTCGAG+GGG | - | chr3_2:31771357-31771376 | None:intergenic | 50.0% | |
GTGTTGGAATGGGATCTCGA+GGG | - | chr3_2:31771358-31771377 | None:intergenic | 50.0% | |
GGGTTACCAAGGGGTAAGTT+TGG | + | chr3_2:31771448-31771467 | Msa0402890:CDS | 50.0% | |
TCTCTACATCTCGCCCAAGA+CGG | - | chr3_2:31771496-31771515 | None:intergenic | 50.0% | |
TCACGGACATCAGCCAACAA+AGG | - | chr3_2:31772404-31772423 | None:intergenic | 50.0% | |
TTGGCTGATGTCCGTGATAG+TGG | + | chr3_2:31772407-31772426 | Msa0402890:CDS | 50.0% | |
!! | CCGTGATAGTGGCTTGTTGA+AGG | + | chr3_2:31772418-31772437 | Msa0402890:CDS | 50.0% |
CTTGGGGTAGATCCTGAATG+AGG | + | chr3_2:31772615-31772634 | Msa0402890:intron | 50.0% | |
! | GTTAAGGTGGTAAGGGTGTG+TGG | + | chr3_2:31772648-31772667 | Msa0402890:intron | 50.0% |
TGCCGTCCATTTGCAGATGA+AGG | - | chr3_2:31772701-31772720 | None:intergenic | 50.0% | |
GCAAATGGACGGCAAAACAG+TGG | + | chr3_2:31772707-31772726 | Msa0402890:intron | 50.0% | |
AGAATCCCATCACAGGTGTC+TGG | + | chr3_2:31772746-31772765 | Msa0402890:intron | 50.0% | |
CATTCACCAGACACCTGTGA+TGG | - | chr3_2:31772755-31772774 | None:intergenic | 50.0% | |
CATCACAGGTGTCTGGTGAA+TGG | + | chr3_2:31772753-31772772 | Msa0402890:intron | 50.0% | |
TGAATGGATGTGCCAAGCAG+TGG | + | chr3_2:31772769-31772788 | Msa0402890:intron | 50.0% | |
! | AGATGACATGGGCTGAGTTC+TGG | + | chr3_2:31772799-31772818 | Msa0402890:intron | 50.0% |
ATTTGCAGGCCCAACCTTGT+AGG | + | chr3_2:31773013-31773032 | Msa0402890:CDS | 50.0% | |
! | GAGCTTTTCATTTGAGCGGC+TGG | - | chr3_2:31773052-31773071 | None:intergenic | 50.0% |
!! | GGTTTTATGGTCCGTATGCG+TGG | + | chr3_2:31773079-31773098 | Msa0402890:intron | 50.0% |
TTTATGGTCCGTATGCGTGG+GGG | + | chr3_2:31773082-31773101 | Msa0402890:intron | 50.0% | |
AGAGGAGTGGGCCAATAGAA+TGG | + | chr3_2:31773145-31773164 | Msa0402890:intron | 50.0% | |
GAGGAGTGGGCCAATAGAAT+GGG | + | chr3_2:31773146-31773165 | Msa0402890:intron | 50.0% | |
GACAGGTGACCATCATGGAT+TGG | + | chr3_2:31773225-31773244 | Msa0402890:intron | 50.0% | |
! | TGGATTGGACAAAGGAGGTG+TGG | + | chr3_2:31773240-31773259 | Msa0402890:intron | 50.0% |
! | GGATTGGACAAAGGAGGTGT+GGG | + | chr3_2:31773241-31773260 | Msa0402890:intron | 50.0% |
! | AGGAGGTGTGGGAGTCATAA+TGG | + | chr3_2:31773252-31773271 | Msa0402890:intron | 50.0% |
! | GGAGGTGTGGGAGTCATAAT+GGG | + | chr3_2:31773253-31773272 | Msa0402890:intron | 50.0% |
GTGGGTAGAGCTGAGAATTG+TGG | + | chr3_2:31773312-31773331 | Msa0402890:intron | 50.0% | |
GTGTGCACAAAAGAAGGGGA+TGG | + | chr3_2:31773609-31773628 | Msa0402890:intron | 50.0% | |
GTTGGAGAGTAGAGACTAGG+AGG | + | chr3_2:31773656-31773675 | Msa0402890:intron | 50.0% | |
CATCAACCACAACCTTGAGG+GGG | + | chr3_2:31774428-31774447 | Msa0402890:three_prime_UTR | 50.0% | |
ATCAACCACAACCTTGAGGG+GGG | + | chr3_2:31774429-31774448 | Msa0402890:three_prime_UTR | 50.0% | |
CGGCAGAATGCAAGAACCAT+AGG | - | chr3_2:31774503-31774522 | None:intergenic | 50.0% | |
CATGTCAGTGTCGTACTGCT+TGG | + | chr3_2:31774783-31774802 | Msa0402890:three_prime_UTR | 50.0% | |
AACAGAATGGGGCATGGAGG+AGG | - | chr3_2:31770509-31770528 | None:intergenic | 55.0% | |
TGCAACAGAATGGGGCATGG+AGG | - | chr3_2:31770512-31770531 | None:intergenic | 55.0% | |
GTGTGCAACAGAATGGGGCA+TGG | - | chr3_2:31770515-31770534 | None:intergenic | 55.0% | |
! | TGGACATTCCCCGTGCCATT+TGG | + | chr3_2:31770958-31770977 | Msa0402890:CDS | 55.0% |
AGTTCGGGTCCAAATGGCAC+GGG | - | chr3_2:31770970-31770989 | None:intergenic | 55.0% | |
GGTGGTAGGACCATTTGGGA+AGG | + | chr3_2:31771017-31771036 | Msa0402890:CDS | 55.0% | |
GGTAGGACCATTTGGGAAGG+TGG | + | chr3_2:31771020-31771039 | Msa0402890:CDS | 55.0% | |
TATCTACTGGAACGCCGGTG+AGG | + | chr3_2:31771171-31771190 | Msa0402890:CDS | 55.0% | |
AGGATCAGAGGGGTGACTGT+CGG | + | chr3_2:31771191-31771210 | Msa0402890:CDS | 55.0% | |
! | GGTGTTGGAATGGGATCTCG+AGG | - | chr3_2:31771359-31771378 | None:intergenic | 55.0% |
!! | CCAGCCGAAGGTGTTGGAAT+GGG | - | chr3_2:31771368-31771387 | None:intergenic | 55.0% |
!! | ACCAGCCGAAGGTGTTGGAA+TGG | - | chr3_2:31771369-31771388 | None:intergenic | 55.0% |
CTCTACATCTCGCCCAAGAC+GGG | - | chr3_2:31771495-31771514 | None:intergenic | 55.0% | |
GAGCTAGGCTCCTTCCAGAT+TGG | - | chr3_2:31773371-31773390 | None:intergenic | 55.0% | |
! | GTTTTCCCCCCTCAAGGTTG+TGG | - | chr3_2:31774437-31774456 | None:intergenic | 55.0% |
GTCTGGTGTCTGACATGTGC+TGG | + | chr3_2:31774693-31774712 | Msa0402890:three_prime_UTR | 55.0% | |
GTTCGGGTCCAAATGGCACG+GGG | - | chr3_2:31770969-31770988 | None:intergenic | 60.0% | |
GAACGCCGGTGAGGATCAGA+GGG | + | chr3_2:31771180-31771199 | Msa0402890:CDS | 60.0% | |
AACGCCGGTGAGGATCAGAG+GGG | + | chr3_2:31771181-31771200 | Msa0402890:CDS | 60.0% | |
GTCACCCCTCTGATCCTCAC+CGG | - | chr3_2:31771188-31771207 | None:intergenic | 60.0% | |
CCCATTCCAACACCTTCGGC+TGG | + | chr3_2:31771365-31771384 | Msa0402890:CDS | 60.0% | |
TGGCCGTATGCGTGGGAGAA+GGG | + | chr3_2:31773114-31773133 | Msa0402890:intron | 60.0% | |
CACCCCTTCTCCCACGCATA+CGG | - | chr3_2:31773120-31773139 | None:intergenic | 60.0% | |
GGAACGCCGGTGAGGATCAG+AGG | + | chr3_2:31771179-31771198 | Msa0402890:CDS | 65.0% | |
! | AGCGGACCAGCCGAAGGTGT+TGG | - | chr3_2:31771374-31771393 | None:intergenic | 65.0% |
TGGTCAAGCGGACCAGCCGA+AGG | - | chr3_2:31771380-31771399 | None:intergenic | 65.0% | |
! | TTCGGCTGGTCCGCTTGACC+AGG | + | chr3_2:31771379-31771398 | Msa0402890:CDS | 65.0% |
TGGTCCGTATGCGTGGGGGA+AGG | + | chr3_2:31773086-31773105 | Msa0402890:intron | 65.0% | |
GGTCCGTATGCGTGGGGGAA+GGG | + | chr3_2:31773087-31773106 | Msa0402890:intron | 65.0% | |
GTCCGTATGCGTGGGGGAAG+GGG | + | chr3_2:31773088-31773107 | Msa0402890:intron | 65.0% | |
CACCCCTTCCCCCACGCATA+CGG | - | chr3_2:31773093-31773112 | None:intergenic | 65.0% | |
CTGGCCGTATGCGTGGGAGA+AGG | + | chr3_2:31773113-31773132 | Msa0402890:intron | 65.0% | |
GGCCGTATGCGTGGGAGAAG+GGG | + | chr3_2:31773115-31773134 | Msa0402890:intron | 65.0% | |
! | ATGCGTGGGAGAAGGGGTGC+TGG | + | chr3_2:31773121-31773140 | Msa0402890:intron | 65.0% |
!! | TGCGTGGGAGAAGGGGTGCT+GGG | + | chr3_2:31773122-31773141 | Msa0402890:intron | 65.0% |
!! | AAGGGGTGCTGGGAGAGGAG+TGG | + | chr3_2:31773132-31773151 | Msa0402890:intron | 65.0% |
!! | AGGGGTGCTGGGAGAGGAGT+GGG | + | chr3_2:31773133-31773152 | Msa0402890:intron | 65.0% |
! | ATGCGTGGGGGAAGGGGTGC+TGG | + | chr3_2:31773094-31773113 | Msa0402890:intron | 70.0% |
!! | AGGGGTGCTGGCCGTATGCG+TGG | + | chr3_2:31773106-31773125 | Msa0402890:intron | 70.0% |
!! | GGGGTGCTGGCCGTATGCGT+GGG | + | chr3_2:31773107-31773126 | Msa0402890:intron | 70.0% |
!! | GGGAGAAGGGGTGCTGGGAG+AGG | + | chr3_2:31773127-31773146 | Msa0402890:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 31770448 | 31774862 | 31770448 | ID=Msa0402890;Name=Msa0402890 |
chr3_2 | mRNA | 31770448 | 31774862 | 31770448 | ID=Msa0402890-mRNA-1;Parent=Msa0402890;Name=Msa0402890-mRNA-1;_AED=0.15;_eAED=0.15;_QI=237|0.5|0.71|0.71|0.83|0.71|7|492|461 |
chr3_2 | exon | 31770448 | 31770593 | 31770448 | ID=Msa0402890-mRNA-1:exon:6305;Parent=Msa0402890-mRNA-1 |
chr3_2 | exon | 31770674 | 31771595 | 31770674 | ID=Msa0402890-mRNA-1:exon:6306;Parent=Msa0402890-mRNA-1 |
chr3_2 | exon | 31772374 | 31772489 | 31772374 | ID=Msa0402890-mRNA-1:exon:6307;Parent=Msa0402890-mRNA-1 |
chr3_2 | exon | 31772562 | 31772620 | 31772562 | ID=Msa0402890-mRNA-1:exon:6308;Parent=Msa0402890-mRNA-1 |
chr3_2 | exon | 31772896 | 31773091 | 31772896 | ID=Msa0402890-mRNA-1:exon:6309;Parent=Msa0402890-mRNA-1 |
chr3_2 | exon | 31774091 | 31774181 | 31774091 | ID=Msa0402890-mRNA-1:exon:6310;Parent=Msa0402890-mRNA-1 |
chr3_2 | exon | 31774278 | 31774862 | 31774278 | ID=Msa0402890-mRNA-1:exon:6311;Parent=Msa0402890-mRNA-1 |
chr3_2 | five_prime_UTR | 31770448 | 31770593 | 31770448 | ID=Msa0402890-mRNA-1:five_prime_utr;Parent=Msa0402890-mRNA-1 |
chr3_2 | five_prime_UTR | 31770674 | 31770764 | 31770674 | ID=Msa0402890-mRNA-1:five_prime_utr;Parent=Msa0402890-mRNA-1 |
chr3_2 | CDS | 31770765 | 31771595 | 31770765 | ID=Msa0402890-mRNA-1:cds;Parent=Msa0402890-mRNA-1 |
chr3_2 | CDS | 31772374 | 31772489 | 31772374 | ID=Msa0402890-mRNA-1:cds;Parent=Msa0402890-mRNA-1 |
chr3_2 | CDS | 31772562 | 31772620 | 31772562 | ID=Msa0402890-mRNA-1:cds;Parent=Msa0402890-mRNA-1 |
chr3_2 | CDS | 31772896 | 31773091 | 31772896 | ID=Msa0402890-mRNA-1:cds;Parent=Msa0402890-mRNA-1 |
chr3_2 | CDS | 31774091 | 31774181 | 31774091 | ID=Msa0402890-mRNA-1:cds;Parent=Msa0402890-mRNA-1 |
chr3_2 | CDS | 31774278 | 31774370 | 31774278 | ID=Msa0402890-mRNA-1:cds;Parent=Msa0402890-mRNA-1 |
chr3_2 | three_prime_UTR | 31774371 | 31774862 | 31774371 | ID=Msa0402890-mRNA-1:three_prime_utr;Parent=Msa0402890-mRNA-1 |
Gene Sequence |
Protein sequence |