AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1190510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1190510 MtrunA17_Chr8g0359571 94.712 208 11 0 1 208 1 208 6.11e-114 325
Msa1190510 MtrunA17_Chr3g0120801 39.286 112 65 1 104 212 26 137 3.05e-19 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1190510 AT1G78630.1 67.021 188 55 2 27 209 25 210 8.35e-84 249
Msa1190510 AT3G01790.3 37.500 96 60 0 104 199 32 127 5.85e-16 72.8
Msa1190510 AT3G01790.1 37.500 96 60 0 104 199 32 127 2.30e-15 72.4
Msa1190510 AT3G01790.2 37.500 96 60 0 104 199 32 127 2.30e-15 72.4

Find 58 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGCTTGCTCTATCTTTAC+TGG 0.165540 8_1:-33541636 None:intergenic
ATCTTCTTCGACTTCGACTA+TGG 0.277557 8_1:-33541864 None:intergenic
TTGACATGATCCGAAGCTTT+TGG 0.279177 8_1:-33542463 None:intergenic
AGTGCCGCCGATAAAGCTTC+TGG 0.285755 8_1:-33543961 None:intergenic
GATGCTACAGATAAAATTCT+TGG 0.293196 8_1:+33542511 Msa1190510:CDS
GTTGAACTTACCCTCCCTTT+TGG 0.329004 8_1:-33544079 None:intergenic
AGTAATGATTGCAGGACATT+TGG 0.339663 8_1:+33542425 Msa1190510:intron
GTTATACCGGGCCTTGAAAT+CGG 0.364119 8_1:-33541916 None:intergenic
AAGGACATTGTTGCTGTTGA+TGG 0.393115 8_1:-33541668 None:intergenic
AGAGGACCCAGAAGCTTTAT+CGG 0.394368 8_1:+33543954 Msa1190510:CDS
TTATACCGGGCCTTGAAATC+GGG 0.412903 8_1:-33541915 None:intergenic
GCATGTTCAATAATTCGTTC+AGG 0.425127 8_1:-33544040 None:intergenic
GAACCTGAGCCCCGATTTCA+AGG 0.430760 8_1:+33541905 Msa1190510:CDS
TGGTAATTGAGAAGCAAGAA+AGG 0.434624 8_1:-33541768 None:intergenic
CAGGAATTCTGTTCTGCAGC+TGG 0.453155 8_1:-33544021 None:intergenic
TCTGTAGATAAATGCAGAAA+AGG 0.458587 8_1:+33543913 Msa1190510:intron
GTGCTTGCTCTATCTTTACT+GGG 0.465898 8_1:-33541635 None:intergenic
GTTCGTGGCATGCTTCCAAA+AGG 0.478146 8_1:+33544064 Msa1190510:CDS
TGTCTACTGTACAAGTCTCT+TGG 0.480042 8_1:-33544118 None:intergenic
GTGCCGCCGATAAAGCTTCT+GGG 0.487074 8_1:-33543960 None:intergenic
ATTATTGAACATGCTGTTCG+TGG 0.489898 8_1:+33544049 Msa1190510:CDS
TTTCATTGTGCATTCTCAGC+AGG 0.490189 8_1:+33541835 Msa1190510:CDS
GGGCCTTGAAATCGGGGCTC+AGG 0.492080 8_1:-33541908 None:intergenic
AGGACATTTGGAACACAACC+TGG 0.498468 8_1:+33542437 Msa1190510:intron
CGGCGGCACTCAGGTCGACC+TGG 0.501166 8_1:+33543974 Msa1190510:CDS
TGAGAGAATGAAGAAGATGA+AGG 0.506757 8_1:-33541719 None:intergenic
TAATGTATGTAGAGCGAGTG+TGG 0.514673 8_1:-33541607 None:intergenic
AAGCTTTATCGGCGGCACTC+AGG 0.528770 8_1:+33543965 Msa1190510:CDS
AAATGCACCCATGTCCACAC+TGG 0.530923 8_1:-33542593 None:intergenic
AACCTGGTATCCAAAAGCTT+CGG 0.541687 8_1:+33542453 Msa1190510:CDS
CATGGGTGCATTTGTAATTG+TGG 0.546463 8_1:+33542603 Msa1190510:CDS
GCAGAAAAGGTTGCTGTCAG+TGG 0.548150 8_1:+33543926 Msa1190510:CDS
TTGCTCTATCTTTACTGGGA+GGG 0.548495 8_1:-33541631 None:intergenic
TTGAAGATGATGATAATGAA+AGG 0.554980 8_1:-33541799 None:intergenic
GAGAGAATGAAGAAGATGAA+GGG 0.556314 8_1:-33541718 None:intergenic
AATGTATGTAGAGCGAGTGT+GGG 0.563628 8_1:-33541606 None:intergenic
GTACAGTAGACATGTTAAGA+TGG 0.567280 8_1:+33544129 Msa1190510:CDS
CAGAAAAGGTTGCTGTCAGT+GGG 0.568241 8_1:+33543927 Msa1190510:CDS
AATGCACCCATGTCCACACT+GGG 0.589532 8_1:-33542592 None:intergenic
GATGAAGGGAACGTCACTGA+TGG 0.593477 8_1:-33541704 None:intergenic
TTCGTGGCATGCTTCCAAAA+GGG 0.595250 8_1:+33544065 Msa1190510:CDS
GATAATGAAAGGTTTGAAAG+TGG 0.600764 8_1:-33541788 None:intergenic
TGAGCCCCGATTTCAAGGCC+CGG 0.602419 8_1:+33541910 Msa1190510:CDS
TTATACACCCAGTGTGGACA+TGG 0.605815 8_1:+33542585 Msa1190510:CDS
CTTGCTCTATCTTTACTGGG+AGG 0.606998 8_1:-33541632 None:intergenic
GTCTCGACTGTCATACCACC+AGG 0.617174 8_1:-33543992 None:intergenic
TGAGAATGCACAATGAAAGA+TGG 0.621519 8_1:-33541830 None:intergenic
TGATGGTGAACCACACAGCA+AGG 0.624881 8_1:-33541687 None:intergenic
GTGGCATGCTTCCAAAAGGG+AGG 0.631240 8_1:+33544068 Msa1190510:CDS
TGGCATGCTTCCAAAAGGGA+GGG 0.645169 8_1:+33544069 Msa1190510:CDS
CAATTGCGAATCACATCCGA+GGG 0.651937 8_1:+33542548 Msa1190510:CDS
ACAATTGCGAATCACATCCG+AGG 0.652462 8_1:+33542547 Msa1190510:CDS
TATACACCCAGTGTGGACAT+GGG 0.666351 8_1:+33542586 Msa1190510:CDS
ATGTCAATACAGCGAAAACG+TGG 0.689193 8_1:+33542479 Msa1190510:CDS
GGACCCAGAAGCTTTATCGG+CGG 0.709633 8_1:+33543957 Msa1190510:CDS
AGTGACTTATACACCCAGTG+TGG 0.728515 8_1:+33542579 Msa1190510:CDS
GCAACAATGTCCTTGCTGTG+TGG 0.747954 8_1:+33541677 Msa1190510:exon
GGTTCAACACAGATGAAACG+AGG 0.749686 8_1:-33541887 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATAAAATTTAAAAATGA+TGG - chr8_1:33542087-33542106 None:intergenic 10.0%
!!! TGGTTTTAAATTTTAATTAT+AGG + chr8_1:33543632-33543651 Msa1190510:intron 10.0%
!!! TTCATTTTGTTGAAATTTTA+TGG + chr8_1:33541968-33541987 Msa1190510:intron 15.0%
!!! AATTTTATGGTATTAATTTC+TGG + chr8_1:33541981-33542000 Msa1190510:intron 15.0%
!!! ATTTTATGGTATTAATTTCT+GGG + chr8_1:33541982-33542001 Msa1190510:intron 15.0%
!! ATAATTGAAGTAAATTAACA+TGG - chr8_1:33542187-33542206 None:intergenic 15.0%
!! AAAAACTGAAAAGAAAAAAT+TGG - chr8_1:33542270-33542289 None:intergenic 15.0%
!!! TATTTTTAAAGCTTTTAACT+TGG + chr8_1:33542355-33542374 Msa1190510:intron 15.0%
!!! AATTTTCTTTTGGTTTAAAA+TGG + chr8_1:33542732-33542751 Msa1190510:intron 15.0%
!!! TATTTTATTTCGAAAAAAGA+TGG + chr8_1:33542963-33542982 Msa1190510:intron 15.0%
!!! TGATATTTTAGTTTTTTTTG+TGG - chr8_1:33543713-33543732 None:intergenic 15.0%
!! AAAAACTAAAATATCAATAG+AGG + chr8_1:33543717-33543736 Msa1190510:intron 15.0%
!!! TCTTTTCAGTTTTTATTTCT+TGG + chr8_1:33542276-33542295 Msa1190510:intron 20.0%
!! AATGATGATAACAATTTGAA+GGG - chr8_1:33542929-33542948 None:intergenic 20.0%
!! CTGAAATAATTAGAGAAATA+AGG - chr8_1:33543128-33543147 None:intergenic 20.0%
!!! AAGTTTTTTTACTATGCATT+TGG + chr8_1:33543612-33543631 Msa1190510:intron 20.0%
!! AATTGTTTATCATGGAAAAT+TGG - chr8_1:33543688-33543707 None:intergenic 20.0%
!! TTGAAGATGATGATAATGAA+AGG - chr8_1:33541802-33541821 None:intergenic 25.0%
!!! TTCTCTCTCTTTTTTGTTAA+TGG + chr8_1:33541939-33541958 Msa1190510:intron 25.0%
!!! TCTCTCTCTTTTTTGTTAAT+GGG + chr8_1:33541940-33541959 Msa1190510:intron 25.0%
! TTATCATGAAAGAATGAAAC+TGG + chr8_1:33542100-33542119 Msa1190510:intron 25.0%
!! TCTCATTAGTTTAATTAGCT+TGG + chr8_1:33542221-33542240 Msa1190510:intron 25.0%
!! TAATTAGCTTGGAAATGTAT+AGG + chr8_1:33542232-33542251 Msa1190510:intron 25.0%
!! ATTGCTTTAAATCTTTACGT+CGG + chr8_1:33542316-33542335 Msa1190510:intron 25.0%
!! AATCATTACTCTTTTCAGTT+AGG - chr8_1:33542415-33542434 None:intergenic 25.0%
! CTGCATTAATTATTTGCAAT+TGG + chr8_1:33542635-33542654 Msa1190510:intron 25.0%
! TTAATTATTTGCAATTGGCA+TGG + chr8_1:33542640-33542659 Msa1190510:intron 25.0%
!! TTTTTACTTGAACATCTTTC+TGG + chr8_1:33542707-33542726 Msa1190510:intron 25.0%
!!! CTTTCTGGTTAATTTTCTTT+TGG + chr8_1:33542722-33542741 Msa1190510:intron 25.0%
!!! TTCTTTTGGTTTAAAATGGA+TGG + chr8_1:33542736-33542755 Msa1190510:intron 25.0%
! GGAACTTATGAAATATATGA+TGG + chr8_1:33542757-33542776 Msa1190510:intron 25.0%
!!! CAAACCAAAGTTTTTTGAAA+CGG + chr8_1:33542815-33542834 Msa1190510:intron 25.0%
! GAATGATGATAACAATTTGA+AGG - chr8_1:33542930-33542949 None:intergenic 25.0%
!!! GAAATTTTTAATAAGTGCTG+AGG - chr8_1:33543055-33543074 None:intergenic 25.0%
! CATGTTATAAATAAGAAGAC+GGG - chr8_1:33543105-33543124 None:intergenic 25.0%
! GCATGTTATAAATAAGAAGA+CGG - chr8_1:33543106-33543125 None:intergenic 25.0%
!!! CATTAAGAGTACTAGTATTT+AGG - chr8_1:33543297-33543316 None:intergenic 25.0%
! GTTATGTATATCTGATGTTA+AGG + chr8_1:33543554-33543573 Msa1190510:intron 25.0%
! TATCTATAGAATGTAGAAAG+CGG - chr8_1:33543586-33543605 None:intergenic 25.0%
! TCTACATTCTATAGATAGTA+AGG + chr8_1:33543589-33543608 Msa1190510:intron 25.0%
! ATGTATGACTAATTATCTGA+TGG + chr8_1:33543656-33543675 Msa1190510:intron 25.0%
! TTGTGGAAAATTGTTTATCA+TGG - chr8_1:33543696-33543715 None:intergenic 25.0%
! AAACAAAATCTCCTACAAAA+TGG + chr8_1:33543740-33543759 Msa1190510:intron 25.0%
!! AAACAATACAACCATTTTGT+AGG - chr8_1:33543754-33543773 None:intergenic 25.0%
! CATTAATGACTATGTTTATG+AGG + chr8_1:33543791-33543810 Msa1190510:intron 25.0%
!!! TCTTGGACTATTATTTTAAC+TGG + chr8_1:33543887-33543906 Msa1190510:intron 25.0%
!!! CTTGGACTATTATTTTAACT+GGG + chr8_1:33543888-33543907 Msa1190510:intron 25.0%
!!! TTGGACTATTATTTTAACTG+GGG + chr8_1:33543889-33543908 Msa1190510:intron 25.0%
GATAATGAAAGGTTTGAAAG+TGG - chr8_1:33541791-33541810 None:intergenic 30.0%
AAAAGAGAGAGAAGTTATAC+CGG - chr8_1:33541932-33541951 None:intergenic 30.0%
! TGAGACTTTTCTATTCCATA+TGG - chr8_1:33542021-33542040 None:intergenic 30.0%
ACTAATGAGACTAGAAATGT+AGG - chr8_1:33542211-33542230 None:intergenic 30.0%
GATGCTACAGATAAAATTCT+TGG + chr8_1:33542511-33542530 Msa1190510:CDS 30.0%
!!! CATGGAAATGCTGTTTTTTA+TGG + chr8_1:33542658-33542677 Msa1190510:intron 30.0%
ATGTCCGTTTCAAAAAACTT+TGG - chr8_1:33542822-33542841 None:intergenic 30.0%
!!! GTTTTTTGAAACGGACATAT+AGG + chr8_1:33542824-33542843 Msa1190510:intron 30.0%
!! ATTTTAGCCTTTCCTTTTTG+CGG + chr8_1:33542864-33542883 Msa1190510:intron 30.0%
ATCATCATTCTGATAGAAAC+TGG + chr8_1:33542940-33542959 Msa1190510:intron 30.0%
ACAATGGACGTTATATTACA+AGG - chr8_1:33543159-33543178 None:intergenic 30.0%
GATAGTTAACAACTGTACAA+TGG - chr8_1:33543175-33543194 None:intergenic 30.0%
AATAACAGTAACTCTCCAAA+AGG - chr8_1:33543229-33543248 None:intergenic 30.0%
GTCACATTGACAAAGAAATT+TGG + chr8_1:33543358-33543377 Msa1190510:intron 30.0%
TTATGTCTGAATGTTTGTCA+TGG + chr8_1:33543490-33543509 Msa1190510:intron 30.0%
TCATAAAGCAATCGTCTAAA+CGG - chr8_1:33543865-33543884 None:intergenic 30.0%
TCTGTAGATAAATGCAGAAA+AGG + chr8_1:33543913-33543932 Msa1190510:intron 30.0%
GAGAGAATGAAGAAGATGAA+GGG - chr8_1:33541721-33541740 None:intergenic 35.0%
TGAGAGAATGAAGAAGATGA+AGG - chr8_1:33541722-33541741 None:intergenic 35.0%
TGGTAATTGAGAAGCAAGAA+AGG - chr8_1:33541771-33541790 None:intergenic 35.0%
TGAGAATGCACAATGAAAGA+TGG - chr8_1:33541833-33541852 None:intergenic 35.0%
AAAGAGAGAGAAGTTATACC+GGG - chr8_1:33541931-33541950 None:intergenic 35.0%
CTGAAAAGAGTAATGATTGC+AGG + chr8_1:33542417-33542436 Msa1190510:intron 35.0%
AGTAATGATTGCAGGACATT+TGG + chr8_1:33542425-33542444 Msa1190510:intron 35.0%
! AAGTCACTAGATTTTTCCCT+CGG - chr8_1:33542567-33542586 None:intergenic 35.0%
! TGGACTGTTTTGTAAGTAGA+AGG + chr8_1:33542777-33542796 Msa1190510:intron 35.0%
GAAACGGACATATAGGTTAA+TGG + chr8_1:33542831-33542850 Msa1190510:intron 35.0%
AAGTTAGAGGCAAAACATCA+AGG + chr8_1:33543004-33543023 Msa1190510:intron 35.0%
AGTTAGAGGCAAAACATCAA+GGG + chr8_1:33543005-33543024 Msa1190510:intron 35.0%
GAGTACTAGTATTTAGGAAG+AGG - chr8_1:33543291-33543310 None:intergenic 35.0%
TGTGACATTATTACAGCAGA+GGG - chr8_1:33543344-33543363 None:intergenic 35.0%
ATGTGACATTATTACAGCAG+AGG - chr8_1:33543345-33543364 None:intergenic 35.0%
! TCATGGCTTTTCGATCATAA+TGG + chr8_1:33543507-33543526 Msa1190510:intron 35.0%
! CATGGCTTTTCGATCATAAT+GGG + chr8_1:33543508-33543527 Msa1190510:intron 35.0%
AGCATAAAACTTCGTGAGAA+GGG - chr8_1:33543821-33543840 None:intergenic 35.0%
TAGCATAAAACTTCGTGAGA+AGG - chr8_1:33543822-33543841 None:intergenic 35.0%
!! TTCTCACGAAGTTTTATGCT+AGG + chr8_1:33543821-33543840 Msa1190510:intron 35.0%
ACGATTGCTTTATGAAGTCT+TGG + chr8_1:33543870-33543889 Msa1190510:intron 35.0%
GCATGTTCAATAATTCGTTC+AGG - chr8_1:33544043-33544062 None:intergenic 35.0%
ATTATTGAACATGCTGTTCG+TGG + chr8_1:33544049-33544068 Msa1190510:CDS 35.0%
GTACAGTAGACATGTTAAGA+TGG + chr8_1:33544129-33544148 Msa1190510:CDS 35.0%
AATGTATGTAGAGCGAGTGT+GGG - chr8_1:33541609-33541628 None:intergenic 40.0%
TAATGTATGTAGAGCGAGTG+TGG - chr8_1:33541610-33541629 None:intergenic 40.0%
TTGCTCTATCTTTACTGGGA+GGG - chr8_1:33541634-33541653 None:intergenic 40.0%
GTGCTTGCTCTATCTTTACT+GGG - chr8_1:33541638-33541657 None:intergenic 40.0%
TGTGCTTGCTCTATCTTTAC+TGG - chr8_1:33541639-33541658 None:intergenic 40.0%
! AAGGACATTGTTGCTGTTGA+TGG - chr8_1:33541671-33541690 None:intergenic 40.0%
TTTCATTGTGCATTCTCAGC+AGG + chr8_1:33541835-33541854 Msa1190510:CDS 40.0%
ATCTTCTTCGACTTCGACTA+TGG - chr8_1:33541867-33541886 None:intergenic 40.0%
GGTCTCTGTAATCTACCATA+TGG + chr8_1:33542003-33542022 Msa1190510:intron 40.0%
AACCTGGTATCCAAAAGCTT+CGG + chr8_1:33542453-33542472 Msa1190510:CDS 40.0%
! TTGACATGATCCGAAGCTTT+TGG - chr8_1:33542466-33542485 None:intergenic 40.0%
ATGTCAATACAGCGAAAACG+TGG + chr8_1:33542479-33542498 Msa1190510:CDS 40.0%
CATGGGTGCATTTGTAATTG+TGG + chr8_1:33542603-33542622 Msa1190510:CDS 40.0%
TGACTTACCGCAAAAAGGAA+AGG - chr8_1:33542874-33542893 None:intergenic 40.0%
AGATGGAGATAAGCCCTATT+TGG + chr8_1:33542980-33542999 Msa1190510:intron 40.0%
GATGGAGATAAGCCCTATTT+GGG + chr8_1:33542981-33543000 Msa1190510:intron 40.0%
TGCCTCTAACTTCCCAAATA+GGG - chr8_1:33542996-33543015 None:intergenic 40.0%
TTGCCTCTAACTTCCCAAAT+AGG - chr8_1:33542997-33543016 None:intergenic 40.0%
!! TAATAAGTGCTGAGGCCTTT+GGG - chr8_1:33543047-33543066 None:intergenic 40.0%
!! TTAATAAGTGCTGAGGCCTT+TGG - chr8_1:33543048-33543067 None:intergenic 40.0%
AATAAGAAGACGGGTCAAGT+GGG - chr8_1:33543096-33543115 None:intergenic 40.0%
AAATAAGAAGACGGGTCAAG+TGG - chr8_1:33543097-33543116 None:intergenic 40.0%
GAGGAGCAGGTATAAAAACA+GGG - chr8_1:33543200-33543219 None:intergenic 40.0%
AGAGGAGCAGGTATAAAAAC+AGG - chr8_1:33543201-33543220 None:intergenic 40.0%
ACTCTCCAAAAGGAGAATAG+AGG - chr8_1:33543219-33543238 None:intergenic 40.0%
GTATTTAGGAAGAGGAAGAG+TGG - chr8_1:33543283-33543302 None:intergenic 40.0%
TGTCTACTGTACAAGTCTCT+TGG - chr8_1:33544121-33544140 None:intergenic 40.0%
CTTGCTCTATCTTTACTGGG+AGG - chr8_1:33541635-33541654 None:intergenic 45.0%
GGTTCAACACAGATGAAACG+AGG - chr8_1:33541890-33541909 None:intergenic 45.0%
TTATACCGGGCCTTGAAATC+GGG - chr8_1:33541918-33541937 None:intergenic 45.0%
GTTATACCGGGCCTTGAAAT+CGG - chr8_1:33541919-33541938 None:intergenic 45.0%
! AGGACATTTGGAACACAACC+TGG + chr8_1:33542437-33542456 Msa1190510:intron 45.0%
! ATCCGAAGCTTTTGGATACC+AGG - chr8_1:33542458-33542477 None:intergenic 45.0%
ACAATTGCGAATCACATCCG+AGG + chr8_1:33542547-33542566 Msa1190510:CDS 45.0%
CAATTGCGAATCACATCCGA+GGG + chr8_1:33542548-33542567 Msa1190510:CDS 45.0%
AGTGACTTATACACCCAGTG+TGG + chr8_1:33542579-33542598 Msa1190510:CDS 45.0%
TTATACACCCAGTGTGGACA+TGG + chr8_1:33542585-33542604 Msa1190510:CDS 45.0%
TATACACCCAGTGTGGACAT+GGG + chr8_1:33542586-33542605 Msa1190510:CDS 45.0%
CATGGTGACTTACCGCAAAA+AGG - chr8_1:33542879-33542898 None:intergenic 45.0%
TGCGGTAAGTCACCATGAAA+TGG + chr8_1:33542882-33542901 Msa1190510:intron 45.0%
AGCCCTATTTGGGAAGTTAG+AGG + chr8_1:33542991-33543010 Msa1190510:intron 45.0%
ATGCGTCTCCTTATACCCAA+AGG + chr8_1:33543029-33543048 Msa1190510:intron 45.0%
CAAAAGGAGAATAGAGGAGC+AGG - chr8_1:33543213-33543232 None:intergenic 45.0%
! CTGCTCCTCTATTCTCCTTT+TGG + chr8_1:33543211-33543230 Msa1190510:intron 45.0%
CAGAAAAGGTTGCTGTCAGT+GGG + chr8_1:33543927-33543946 Msa1190510:CDS 45.0%
TTGCTGTCAGTGGGAAAAAG+AGG + chr8_1:33543936-33543955 Msa1190510:CDS 45.0%
! AGAGGACCCAGAAGCTTTAT+CGG + chr8_1:33543954-33543973 Msa1190510:CDS 45.0%
TTCGTGGCATGCTTCCAAAA+GGG + chr8_1:33544065-33544084 Msa1190510:CDS 45.0%
! GTTGAACTTACCCTCCCTTT+TGG - chr8_1:33544082-33544101 None:intergenic 45.0%
! GCAACAATGTCCTTGCTGTG+TGG + chr8_1:33541677-33541696 Msa1190510:exon 50.0%
! TGATGGTGAACCACACAGCA+AGG - chr8_1:33541690-33541709 None:intergenic 50.0%
GATGAAGGGAACGTCACTGA+TGG - chr8_1:33541707-33541726 None:intergenic 50.0%
TATACCGGGCCTTGAAATCG+GGG - chr8_1:33541917-33541936 None:intergenic 50.0%
AATGCACCCATGTCCACACT+GGG - chr8_1:33542595-33542614 None:intergenic 50.0%
AAATGCACCCATGTCCACAC+TGG - chr8_1:33542596-33542615 None:intergenic 50.0%
GTCACCATGAAATGGCGTAG+AGG + chr8_1:33542890-33542909 Msa1190510:intron 50.0%
CATGAAATGGCGTAGAGGCT+CGG + chr8_1:33542895-33542914 Msa1190510:intron 50.0%
TGCTGAGGCCTTTGGGTATA+AGG - chr8_1:33543040-33543059 None:intergenic 50.0%
GCAGAAAAGGTTGCTGTCAG+TGG + chr8_1:33543926-33543945 Msa1190510:CDS 50.0%
CAGGAATTCTGTTCTGCAGC+TGG - chr8_1:33544024-33544043 None:intergenic 50.0%
GTTCGTGGCATGCTTCCAAA+AGG + chr8_1:33544064-33544083 Msa1190510:CDS 50.0%
TGGCATGCTTCCAAAAGGGA+GGG + chr8_1:33544069-33544088 Msa1190510:CDS 50.0%
GAACCTGAGCCCCGATTTCA+AGG + chr8_1:33541905-33541924 Msa1190510:CDS 55.0%
CGAGCCTCTACGCCATTTCA+TGG - chr8_1:33542897-33542916 None:intergenic 55.0%
! GGACCCAGAAGCTTTATCGG+CGG + chr8_1:33543957-33543976 Msa1190510:CDS 55.0%
GTGCCGCCGATAAAGCTTCT+GGG - chr8_1:33543963-33543982 None:intergenic 55.0%
AGTGCCGCCGATAAAGCTTC+TGG - chr8_1:33543964-33543983 None:intergenic 55.0%
! AAGCTTTATCGGCGGCACTC+AGG + chr8_1:33543965-33543984 Msa1190510:CDS 55.0%
GTCTCGACTGTCATACCACC+AGG - chr8_1:33543995-33544014 None:intergenic 55.0%
GTGGCATGCTTCCAAAAGGG+AGG + chr8_1:33544068-33544087 Msa1190510:CDS 55.0%
TGAGCCCCGATTTCAAGGCC+CGG + chr8_1:33541910-33541929 Msa1190510:CDS 60.0%
GGGCCTTGAAATCGGGGCTC+AGG - chr8_1:33541911-33541930 None:intergenic 65.0%
CGGCACTCAGGTCGACCTGG+TGG + chr8_1:33543977-33543996 Msa1190510:CDS 70.0%
CGGCGGCACTCAGGTCGACC+TGG + chr8_1:33543974-33543993 Msa1190510:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 33541599 33544159 33541599 ID=Msa1190510;Name=Msa1190510
chr8_1 mRNA 33541599 33544159 33541599 ID=Msa1190510-mRNA-1;Parent=Msa1190510;Name=Msa1190510-mRNA-1;_AED=0.18;_eAED=0.18;_QI=84|1|0.66|1|1|1|3|0|224
chr8_1 exon 33541599 33541931 33541599 ID=Msa1190510-mRNA-1:exon:11257;Parent=Msa1190510-mRNA-1
chr8_1 exon 33542439 33542624 33542439 ID=Msa1190510-mRNA-1:exon:11258;Parent=Msa1190510-mRNA-1
chr8_1 exon 33543920 33544159 33543920 ID=Msa1190510-mRNA-1:exon:11259;Parent=Msa1190510-mRNA-1
chr8_1 five_prime_UTR 33541599 33541682 33541599 ID=Msa1190510-mRNA-1:five_prime_utr;Parent=Msa1190510-mRNA-1
chr8_1 CDS 33541683 33541931 33541683 ID=Msa1190510-mRNA-1:cds;Parent=Msa1190510-mRNA-1
chr8_1 CDS 33542439 33542624 33542439 ID=Msa1190510-mRNA-1:cds;Parent=Msa1190510-mRNA-1
chr8_1 CDS 33543920 33544159 33543920 ID=Msa1190510-mRNA-1:cds;Parent=Msa1190510-mRNA-1
Gene Sequence

>Msa1190510

ATGTCCTTGCTGTGTGGTTCACCATCAGTGACGTTCCCTTCATCTTCTTCATTCTCTCATCACAAGAATTCTACTTCTAAATCTTCCTTTCTTGCTTCTCAATTACCACTTTCAAACCTTTCATTATCATCATCTTCAATTCGTACTCCATCTTTCATTGTGCATTCTCAGCAGGACACTTCCATAGTCGAAGTCGAAGAAGATCCTCGTTTCATCTGTGTTGAACCTGAGCCCCGATTTCAAGGCCCGGACATTTGGAACACAACCTGGTATCCAAAAGCTTCGGATCATGTCAATACAGCGAAAACGTGGTATATTGTTGATGCTACAGATAAAATTCTTGGAAGACTAGCATCAACAATTGCGAATCACATCCGAGGGAAAAATCTAGTGACTTATACACCCAGTGTGGACATGGGTGCATTTGTAATTGTGATAAATGCAGAAAAGGTTGCTGTCAGTGGGAAAAAGAGGACCCAGAAGCTTTATCGGCGGCACTCAGGTCGACCTGGTGGTATGACAGTCGAGACATTTGACCAGCTGCAGAACAGAATTCCTGAACGAATTATTGAACATGCTGTTCGTGGCATGCTTCCAAAAGGGAGGGTAAGTTCAACAAAGTTTAATGTTTTTCCAAGAGACTTGTACAGTAGACATGTTAAGATGGATCATTGA

Protein sequence

>Msa1190510

MSLLCGSPSVTFPSSSSFSHHKNSTSKSSFLASQLPLSNLSLSSSSIRTPSFIVHSQQDTSIVEVEEDPRFICVEPEPRFQGPDIWNTTWYPKASDHVNTAKTWYIVDATDKILGRLASTIANHIRGKNLVTYTPSVDMGAFVIVINAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQNRIPERIIEHAVRGMLPKGRVSSTKFNVFPRDLYSRHVKMDH*