AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1403840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1403840 MtrunA17_Chr4g0077121 96.746 338 9 1 1 338 1 336 0.0 674
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1403840 AT2G43950.1 63.295 346 113 3 2 338 3 343 2.71e-153 434
Msa1403840 AT2G43950.2 58.958 307 112 3 2 299 3 304 6.31e-121 352

Find 111 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGGAGCGTGTAATTATT+AGG 0.200366 tig0022980:-47109 None:intergenic
CTGAAAAGATAATTTCAATT+TGG 0.215408 tig0022980:-47299 None:intergenic
CGTGTAATTATTAGGGTTTC+CGG 0.226456 tig0022980:-47101 None:intergenic
AATTGAACTTTCATCTTCAT+TGG 0.277986 tig0022980:-50241 None:intergenic
ATTTGACGGGAGAGAAAGTA+TGG 0.298323 tig0022980:-47981 None:intergenic
CCTTGGCTGGGCATCCCTTT+GGG 0.317934 tig0022980:+49664 Msa1403840:CDS
GGAAATCTGAAAGTTGCTTT+TGG 0.321527 tig0022980:-47629 None:intergenic
ATTCGGAGGTTCGCCTTGGC+TGG 0.321634 tig0022980:+49651 Msa1403840:CDS
ATATAAATTGCAGGAAATTT+CGG 0.321891 tig0022980:-50350 None:intergenic
GCCTTGGCTGGGCATCCCTT+TGG 0.333645 tig0022980:+49663 Msa1403840:CDS
TCAGTCAGTGGGATTCTTAA+AGG 0.336080 tig0022980:+47728 Msa1403840:CDS
ACAATTGCGATTCGAACTAT+TGG 0.339553 tig0022980:+49573 Msa1403840:CDS
TATGGAGCGTGTAATTATTA+GGG 0.342261 tig0022980:-47108 None:intergenic
AGCACCAGTGAGTTTGAATC+TGG 0.355796 tig0022980:-47440 None:intergenic
AGAAGAGATGGGACATTTGA+TGG 0.358516 tig0022980:+50320 Msa1403840:CDS
ATAATTGACATATAAATTGC+AGG 0.362902 tig0022980:-50359 None:intergenic
TTCTTCTGATAACTATAATT+CGG 0.366285 tig0022980:-50555 None:intergenic
CTAGAGCACTGTGGTCTTCA+AGG 0.384543 tig0022980:-47393 None:intergenic
TTCCTTCAGGTTGGTGATGA+AGG 0.388318 tig0022980:+50199 Msa1403840:intron
TACTCGGAAATGACAAGATA+TGG 0.407168 tig0022980:-47189 None:intergenic
TATTCTGCAAAGGTGACATT+TGG 0.416630 tig0022980:+50398 Msa1403840:three_prime_UTR
ATTTAAAGCTGGTTATGATT+CGG 0.428310 tig0022980:+49634 Msa1403840:CDS
AAGACCAAACCTACGCTTGA+AGG 0.430680 tig0022980:-48017 None:intergenic
TTGGTCTTTCTGACAAGTTA+AGG 0.431557 tig0022980:+48032 Msa1403840:CDS
TTTGTTGACGGCGGCGGCGG+CGG 0.438275 tig0022980:-47166 None:intergenic
AGAGAAAGAGGAGGAGCAGC+AGG 0.441827 tig0022980:+47673 Msa1403840:CDS
CAACTACCGCCGGTGAGGAT+TGG 0.444311 tig0022980:-47135 None:intergenic
TGACTAGTGGGTGGTGGAGA+TGG 0.451110 tig0022980:+47069 Msa1403840:exon
AAAATTTACAGGAAACTTTG+TGG 0.453050 tig0022980:-47264 None:intergenic
AGAGGAGGAGCAGCAGGAGG+AGG 0.453391 tig0022980:+47679 Msa1403840:CDS
TGCGCTTTCGCTGTCGAACT+CGG 0.456394 tig0022980:-47233 None:intergenic
TTTGCCTTCAAGCGTAGGTT+TGG 0.457188 tig0022980:+48013 Msa1403840:CDS
GAGTGAGATAAGTGACTAGT+GGG 0.464137 tig0022980:+47057 Msa1403840:five_prime_UTR
TGGTTTGTTGACGGCGGCGG+CGG 0.466893 tig0022980:-47169 None:intergenic
GAAGATTTCAAATTTAAAGC+TGG 0.470602 tig0022980:+49623 Msa1403840:CDS
TGATAGTTGAAGTGCATAGC+CGG 0.474867 tig0022980:-47518 None:intergenic
ATATGGTTTGTTGACGGCGG+CGG 0.478912 tig0022980:-47172 None:intergenic
GTGGAGATGGATTCAGCAAC+CGG 0.479701 tig0022980:+47082 Msa1403840:exon
TTCGGAGGTTCGCCTTGGCT+GGG 0.481241 tig0022980:+49652 Msa1403840:CDS
GCCACTTCCATCCGCTGGAT+TGG 0.483583 tig0022980:+47543 Msa1403840:CDS
ATTCTGAGGGCAGGCCTACT+CGG 0.483618 tig0022980:-47205 None:intergenic
TAATTCCTTAGCGGTGTGGC+TGG 0.483813 tig0022980:+50447 Msa1403840:three_prime_UTR
CACACCGCTAAGGAATTAGA+TGG 0.483818 tig0022980:-50442 None:intergenic
TATGATTCGGAGGTTCGCCT+TGG 0.485674 tig0022980:+49647 Msa1403840:CDS
GATAGTTGAAGTGCATAGCC+GGG 0.505267 tig0022980:-47517 None:intergenic
GAATCTGGGACCAACGTCAA+TGG 0.510577 tig0022980:-47425 None:intergenic
ACCAATCCAGCGGATGGAAG+TGG 0.512331 tig0022980:-47544 None:intergenic
CTTCAGGTTGGTGATGAAGG+TGG 0.513813 tig0022980:+50202 Msa1403840:intron
AGAGTGAGATAAGTGACTAG+TGG 0.514533 tig0022980:+47056 Msa1403840:five_prime_UTR
GACAAGATATGGTTTGTTGA+CGG 0.514737 tig0022980:-47178 None:intergenic
AGTTTCGTTACAAGAGAAAG+AGG 0.517878 tig0022980:+47661 Msa1403840:CDS
AAATTTGAAATCTTCACCAT+AGG 0.521461 tig0022980:-49615 None:intergenic
GCTAAGGAATTAGATGGACT+TGG 0.525007 tig0022980:-50436 None:intergenic
TGTCATTTGCCTTCAAGCGT+AGG 0.530223 tig0022980:+48008 Msa1403840:CDS
TGTTTCGGATTAAGAAGAGA+TGG 0.531407 tig0022980:+50308 Msa1403840:CDS
GCAAATGACAAATCATTTGA+CGG 0.532446 tig0022980:-47995 None:intergenic
CACTGGTGCTCATGATGTCA+AGG 0.533292 tig0022980:+47453 Msa1403840:CDS
TCAACGCCACTTCCATCCGC+TGG 0.542399 tig0022980:+47538 Msa1403840:CDS
TCAATTCATCATCCTTGTAG+TGG 0.542879 tig0022980:-47778 None:intergenic
AAGTCCATCTAATTCCTTAG+CGG 0.543011 tig0022980:+50438 Msa1403840:three_prime_UTR
GCAACTTTCAGATTTCCTCT+AGG 0.543233 tig0022980:+47635 Msa1403840:CDS
GCTGTCTACAAGCATACCTA+TGG 0.550366 tig0022980:+49599 Msa1403840:CDS
CAAGGTCGTAGTGGAGGCTA+AGG 0.551757 tig0022980:-47375 None:intergenic
CAAATGACAAATCATTTGAC+GGG 0.553334 tig0022980:-47994 None:intergenic
TTCAGGTTGGTGATGAAGGT+GGG 0.556339 tig0022980:+50203 Msa1403840:intron
AAAATTCCTTGTCAGTCAGT+GGG 0.556400 tig0022980:+47717 Msa1403840:CDS
GTTTCGGATTAAGAAGAGAT+GGG 0.558012 tig0022980:+50309 Msa1403840:CDS
AAATGAGACACGTACCCAAA+GGG 0.561109 tig0022980:-49678 None:intergenic
CAATTCATCATCCTTGTAGT+GGG 0.563611 tig0022980:-47777 None:intergenic
CGAACTCGGTGGTAATTCTG+AGG 0.569969 tig0022980:-47219 None:intergenic
GGTCCCAGATTCAAACTCAC+TGG 0.571945 tig0022980:+47436 Msa1403840:CDS
GATAAGTGACTAGTGGGTGG+TGG 0.572597 tig0022980:+47063 Msa1403840:five_prime_UTR
AAAATATGGGTATTCTGCAA+AGG 0.573738 tig0022980:+50388 Msa1403840:three_prime_UTR
GAAAGAGGAGGAGCAGCAGG+AGG 0.574367 tig0022980:+47676 Msa1403840:CDS
ATATCTTGTCATTTCCGAGT+AGG 0.574605 tig0022980:+47191 Msa1403840:CDS
TCGGTGGTAATTCTGAGGGC+AGG 0.578370 tig0022980:-47214 None:intergenic
CCCAAAGGGATGCCCAGCCA+AGG 0.579829 tig0022980:-49664 None:intergenic
GAACATACCAATCCAGCGGA+TGG 0.588139 tig0022980:-47550 None:intergenic
AAGATAATTTCAATTTGGCG+AGG 0.598597 tig0022980:-47294 None:intergenic
TGTCTGCACTGCCCACTACA+AGG 0.599268 tig0022980:+47766 Msa1403840:CDS
TAAAGCTGGTTATGATTCGG+AGG 0.600014 tig0022980:+49637 Msa1403840:CDS
GAAGTTAAGATACCGCTACA+AGG 0.605149 tig0022980:+47799 Msa1403840:CDS
GTTGCTAATATCGCTGACCC+CGG 0.605885 tig0022980:+47499 Msa1403840:CDS
GTTAAGAGTTCCATTGACGT+TGG 0.609020 tig0022980:+47415 Msa1403840:CDS
TATGAAGCTGATCTGAGGCT+CGG 0.610187 tig0022980:-47344 None:intergenic
AAGAATCCCACTGACTGACA+AGG 0.611862 tig0022980:-47723 None:intergenic
CCATAAAATCCAATCCTCAC+CGG 0.611947 tig0022980:+47126 Msa1403840:CDS
CATGATGTCAAGGCTCAACA+AGG 0.612893 tig0022980:+47463 Msa1403840:CDS
GGTCTTCAAGGTCGTAGTGG+AGG 0.622677 tig0022980:-47381 None:intergenic
TGTGGTCTTCAAGGTCGTAG+TGG 0.626033 tig0022980:-47384 None:intergenic
GGCAGAGGATCAACTACCGC+CGG 0.628335 tig0022980:-47145 None:intergenic
AAATTGCAGGAAATTTCGGT+AGG 0.630272 tig0022980:-50346 None:intergenic
CATCTAATTCCTTAGCGGTG+TGG 0.635377 tig0022980:+50443 Msa1403840:three_prime_UTR
TTCGATATGAAGCTGATCTG+AGG 0.636620 tig0022980:-47349 None:intergenic
GCACCAGTGAGTTTGAATCT+GGG 0.638299 tig0022980:-47439 None:intergenic
TTTACAGTCACGTTGCAAGA+CGG 0.638613 tig0022980:-50602 None:intergenic
GAACTCGGTGGTAATTCTGA+GGG 0.640245 tig0022980:-47218 None:intergenic
AGGATCAACTACCGCCGGTG+AGG 0.644689 tig0022980:-47140 None:intergenic
TTCGTTACAAGAGAAAGAGG+AGG 0.646802 tig0022980:+47664 Msa1403840:CDS
AGCAGTAATATACCTTGTAG+CGG 0.666629 tig0022980:-47811 None:intergenic
TGTCAAGGCTCAACAAGGAG+AGG 0.670822 tig0022980:+47468 Msa1403840:CDS
AAGATATGGTTTGTTGACGG+CGG 0.675992 tig0022980:-47175 None:intergenic
GCTTTCGCTGTCGAACTCGG+TGG 0.680041 tig0022980:-47230 None:intergenic
TTTGACGGGAGAGAAAGTAT+GGG 0.685254 tig0022980:-47980 None:intergenic
TGAGATAAGTGACTAGTGGG+TGG 0.689966 tig0022980:+47060 Msa1403840:five_prime_UTR
ATAGTTGAAGTGCATAGCCG+GGG 0.690042 tig0022980:-47516 None:intergenic
AAAAGAACATACCAATCCAG+CGG 0.697521 tig0022980:-47554 None:intergenic
TCAACAAGGAGAGGTTACAA+TGG 0.698086 tig0022980:+47477 Msa1403840:CDS
TGTAACGAAACTTCACCTAG+AGG 0.699865 tig0022980:-47650 None:intergenic
TAAAATCCAATCCTCACCGG+CGG 0.708233 tig0022980:+47129 Msa1403840:CDS
AACTCTTAACTAGAGCACTG+TGG 0.799938 tig0022980:-47402 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATAAAATGATAAAAATT+GGG - tig0022980:47843-47862 None:intergenic 10.0%
!! ATAGATAAAATGATAAAAAT+TGG - tig0022980:47844-47863 None:intergenic 10.0%
!!! TTTGTTTATTTTAAATTACA+AGG - tig0022980:48957-48976 None:intergenic 10.0%
!!! TAAATTTTTCAAATAAATGC+AGG + tig0022980:47937-47956 Msa1403840:intron 15.0%
!! TAAATCTTAGAAAATGAAAA+TGG + tig0022980:48704-48723 Msa1403840:intron 15.0%
!! AAATCTTAGAAAATGAAAAT+GGG + tig0022980:48705-48724 Msa1403840:intron 15.0%
!! TCAAATATCATAAAAGAAAA+TGG - tig0022980:48811-48830 None:intergenic 15.0%
!! CACAACAAATAAAAAAATTA+GGG - tig0022980:49024-49043 None:intergenic 15.0%
!! TCACAACAAATAAAAAAATT+AGG - tig0022980:49025-49044 None:intergenic 15.0%
!! AAATTAATGTTTCATGTAAA+AGG - tig0022980:49093-49112 None:intergenic 15.0%
!! CAAAAAAAATTCAAGTAAAA+AGG - tig0022980:50023-50042 None:intergenic 15.0%
!! CTGAAAAGATAATTTCAATT+TGG - tig0022980:47302-47321 None:intergenic 20.0%
!! AAATAAATGAATGATAGTAG+AGG - tig0022980:47598-47617 None:intergenic 20.0%
!! ATAGGAAAAAATTCTTAAGA+GGG - tig0022980:48073-48092 None:intergenic 20.0%
!! AATAGGAAAAAATTCTTAAG+AGG - tig0022980:48074-48093 None:intergenic 20.0%
!!! TTTAACATAACATTTCTAGA+TGG - tig0022980:48116-48135 None:intergenic 20.0%
!!! GTTAAAATTGTTTTATCAAG+TGG + tig0022980:48130-48149 Msa1403840:intron 20.0%
!!! TCTTTCTTATTTATCTCATA+GGG - tig0022980:48401-48420 None:intergenic 20.0%
!!! TTCTTTCTTATTTATCTCAT+AGG - tig0022980:48402-48421 None:intergenic 20.0%
!! AATGATTTCACAAAGTAAAT+GGG - tig0022980:48450-48469 None:intergenic 20.0%
!! AAATGATTTCACAAAGTAAA+TGG - tig0022980:48451-48470 None:intergenic 20.0%
!!! AAATTTTCAGAAACTTTTAG+TGG + tig0022980:48835-48854 Msa1403840:intron 20.0%
!! GTTATGAAAAATGTAAGTTT+AGG - tig0022980:48882-48901 None:intergenic 20.0%
!!! TATTTTAAATTACAAGGAGA+TGG - tig0022980:48951-48970 None:intergenic 20.0%
!! TTCTAATGAGATTATATTGA+GGG - tig0022980:49061-49080 None:intergenic 20.0%
!! ATTCTAATGAGATTATATTG+AGG - tig0022980:49062-49081 None:intergenic 20.0%
!!! TTTTAAAAGCCATATTAGTA+AGG - tig0022980:49531-49550 None:intergenic 20.0%
!! ATAATGTTATACTGAACAAA+CGG - tig0022980:49978-49997 None:intergenic 20.0%
!! ATATAAATTGCAGGAAATTT+CGG - tig0022980:50353-50372 None:intergenic 20.0%
!! ATAATTGACATATAAATTGC+AGG - tig0022980:50362-50381 None:intergenic 20.0%
!! TTCTTCTGATAACTATAATT+CGG - tig0022980:50558-50577 None:intergenic 20.0%
!!! TAAGTGATTTTTAACTTGTT+TGG + tig0022980:50625-50644 Msa1403840:three_prime_UTR 20.0%
! AAAATTTACAGGAAACTTTG+TGG - tig0022980:47267-47286 None:intergenic 25.0%
!! CAAAGTTTCCTGTAAATTTT+TGG + tig0022980:47267-47286 Msa1403840:CDS 25.0%
!! CTTAAAGGTCAATTTTTGAA+TGG + tig0022980:47743-47762 Msa1403840:CDS 25.0%
! CACATATTATTGCAAGTAAT+AGG - tig0022980:48091-48110 None:intergenic 25.0%
!!! AAAATTGTTTTATCAAGTGG+TGG + tig0022980:48133-48152 Msa1403840:intron 25.0%
! GAATTTCTTGAAATACAATC+TGG + tig0022980:48247-48266 Msa1403840:intron 25.0%
! AAGAAAGAAAATGAAGAGAA+CGG + tig0022980:48413-48432 Msa1403840:intron 25.0%
! ATGATTTCACAAAGTAAATG+GGG - tig0022980:48449-48468 None:intergenic 25.0%
!!! CTCAGTTTAACTTGATAATA+CGG + tig0022980:48498-48517 Msa1403840:intron 25.0%
!!! TCAGTTTAACTTGATAATAC+GGG + tig0022980:48499-48518 Msa1403840:intron 25.0%
!!! GTTAATTTTACTTGCTAACA+AGG - tig0022980:48683-48702 None:intergenic 25.0%
! ATCATAAAAGAAAATGGTGA+AGG - tig0022980:48805-48824 None:intergenic 25.0%
! CAATTGTAATAGAGAGAATA+TGG - tig0022980:48912-48931 None:intergenic 25.0%
! TTCATCAACTACTTTACATT+TGG + tig0022980:49126-49145 Msa1403840:intron 25.0%
!!! TATCAAAGGAGCATTTAATT+GGG - tig0022980:49243-49262 None:intergenic 25.0%
!! ATTGCTAGCATTTTCTTTTT+TGG + tig0022980:49298-49317 Msa1403840:intron 25.0%
!!! ATGGCTTTTAAAATGCTTTA+TGG + tig0022980:49538-49557 Msa1403840:intron 25.0%
!! AAATTTGAAATCTTCACCAT+AGG - tig0022980:49618-49637 None:intergenic 25.0%
!! GAAGATTTCAAATTTAAAGC+TGG + tig0022980:49623-49642 Msa1403840:CDS 25.0%
!! ATTTAAAGCTGGTTATGATT+CGG + tig0022980:49634-49653 Msa1403840:CDS 25.0%
! ATTAGAAATGCAAAATCAAC+AGG - tig0022980:49754-49773 None:intergenic 25.0%
!! TGATTTTGCATTTCTAATTG+TGG + tig0022980:49756-49775 Msa1403840:intron 25.0%
! TCAAAAAATCCTTTATATGC+AGG - tig0022980:49914-49933 None:intergenic 25.0%
! CATCATTATACTGAGAAATT+CGG + tig0022980:50119-50138 Msa1403840:intron 25.0%
! AATTGAACTTTCATCTTCAT+TGG - tig0022980:50244-50263 None:intergenic 25.0%
!!! AATCTTCAGTTTTGATGTTT+CGG + tig0022980:50293-50312 Msa1403840:CDS 25.0%
!! ACAATCTTTACAGATTTTGT+AGG - tig0022980:50516-50535 None:intergenic 25.0%
TATGGAGCGTGTAATTATTA+GGG - tig0022980:47111-47130 None:intergenic 30.0%
TTATGGAGCGTGTAATTATT+AGG - tig0022980:47112-47131 None:intergenic 30.0%
AAGATAATTTCAATTTGGCG+AGG - tig0022980:47297-47316 None:intergenic 30.0%
! TCTTTTCAGAACAACAGTAA+AGG + tig0022980:47313-47332 Msa1403840:CDS 30.0%
AAGGTAATAAACTGAAGAGA+TGG - tig0022980:47875-47894 None:intergenic 30.0%
ATTTGGCACTCATATAAGAT+TGG + tig0022980:47911-47930 Msa1403840:intron 30.0%
CAAATGACAAATCATTTGAC+GGG - tig0022980:47997-48016 None:intergenic 30.0%
GCAAATGACAAATCATTTGA+CGG - tig0022980:47998-48017 None:intergenic 30.0%
AAATTTGTGTAGAGTAGCTT+TGG - tig0022980:48333-48352 None:intergenic 30.0%
CAAAACAAAGAAATGTAGCA+AGG - tig0022980:48366-48385 None:intergenic 30.0%
!!! TGAGCACGTATTTTTAGAAA+AGG - tig0022980:48482-48501 None:intergenic 30.0%
!! CAGTTTAACTTGATAATACG+GGG + tig0022980:48500-48519 Msa1403840:intron 30.0%
!!! GAACAATTGTCTGCATTTTT+TGG - tig0022980:48640-48659 None:intergenic 30.0%
ATAGAGAGAATATGGAAGAA+AGG - tig0022980:48904-48923 None:intergenic 30.0%
ATGTTTCATGTAAAAGGAGT+CGG - tig0022980:49087-49106 None:intergenic 30.0%
TGTAGTTGATTACTATGTGT+TGG - tig0022980:49153-49172 None:intergenic 30.0%
!! ATCAAAGGAGCATTTAATTG+GGG - tig0022980:49242-49261 None:intergenic 30.0%
!! CTATCAAAGGAGCATTTAAT+TGG - tig0022980:49244-49263 None:intergenic 30.0%
!! GCAATCAATTACTTTTAGGT+TGG - tig0022980:49283-49302 None:intergenic 30.0%
!! GCTAGCAATCAATTACTTTT+AGG - tig0022980:49287-49306 None:intergenic 30.0%
!!! AGCATTTTCTTTTTTGGCTA+TGG + tig0022980:49304-49323 Msa1403840:intron 30.0%
AAAATACCTTGTTCTCTTGT+CGG - tig0022980:49398-49417 None:intergenic 30.0%
AAGTGGAAACACCAAAATAA+GGG - tig0022980:49442-49461 None:intergenic 30.0%
TAAGTGGAAACACCAAAATA+AGG - tig0022980:49443-49462 None:intergenic 30.0%
! AAATACCTATAGAGCATCTT+TGG - tig0022980:49475-49494 None:intergenic 30.0%
AGACGAGCTTATTATTCTAA+GGG - tig0022980:49508-49527 None:intergenic 30.0%
AATGCTTTATGGATAGTTAC+TGG + tig0022980:49549-49568 Msa1403840:intron 30.0%
GGCATTAATGAAATCAGTTA+TGG - tig0022980:49718-49737 None:intergenic 30.0%
AACAGATAGTTAGTAGTGTA+TGG - tig0022980:49782-49801 None:intergenic 30.0%
!! TACTAACTATCTGTTGCTTT+GGG + tig0022980:49787-49806 Msa1403840:intron 30.0%
AGATATGTTGCACTTACATT+GGG + tig0022980:49850-49869 Msa1403840:intron 30.0%
AAAATCCTTTATATGCAGGA+AGG - tig0022980:49910-49929 None:intergenic 30.0%
! GAAGATTTTATGTCATCTTG+TGG - tig0022980:50280-50299 None:intergenic 30.0%
AAAATATGGGTATTCTGCAA+AGG + tig0022980:50388-50407 Msa1403840:three_prime_UTR 30.0%
CGTGTAATTATTAGGGTTTC+CGG - tig0022980:47104-47123 None:intergenic 35.0%
!! GACAAGATATGGTTTGTTGA+CGG - tig0022980:47181-47200 None:intergenic 35.0%
TACTCGGAAATGACAAGATA+TGG - tig0022980:47192-47211 None:intergenic 35.0%
! ATATCTTGTCATTTCCGAGT+AGG + tig0022980:47191-47210 Msa1403840:CDS 35.0%
AAAAGAACATACCAATCCAG+CGG - tig0022980:47557-47576 None:intergenic 35.0%
!! GGAAATCTGAAAGTTGCTTT+TGG - tig0022980:47632-47651 None:intergenic 35.0%
AGTTTCGTTACAAGAGAAAG+AGG + tig0022980:47661-47680 Msa1403840:CDS 35.0%
AAAAATTCCTTGTCAGTCAG+TGG + tig0022980:47716-47735 Msa1403840:CDS 35.0%
AAAATTCCTTGTCAGTCAGT+GGG + tig0022980:47717-47736 Msa1403840:CDS 35.0%
CAATTCATCATCCTTGTAGT+GGG - tig0022980:47780-47799 None:intergenic 35.0%
TCAATTCATCATCCTTGTAG+TGG - tig0022980:47781-47800 None:intergenic 35.0%
AGCAGTAATATACCTTGTAG+CGG - tig0022980:47814-47833 None:intergenic 35.0%
AATAACTACTCAAGCAGCTA+AGG - tig0022980:47894-47913 None:intergenic 35.0%
TAGCTGCTTGAGTAGTTATT+TGG + tig0022980:47894-47913 Msa1403840:intron 35.0%
! TTGGTCTTTCTGACAAGTTA+AGG + tig0022980:48032-48051 Msa1403840:CDS 35.0%
AAGAAAGAAAATACAGCCTC+AGG + tig0022980:48276-48295 Msa1403840:intron 35.0%
ATGAAGAGAACGGAAAATTG+AGG + tig0022980:48423-48442 Msa1403840:intron 35.0%
CATCTTCTCTTCATCACAAT+GGG - tig0022980:48550-48569 None:intergenic 35.0%
TCATCTTCTCTTCATCACAA+TGG - tig0022980:48551-48570 None:intergenic 35.0%
CAGTAAGTGTATGCTATCAA+AGG - tig0022980:49257-49276 None:intergenic 35.0%
!!! TCTTTTTTGGCTATGGTTTG+TGG + tig0022980:49311-49330 Msa1403840:intron 35.0%
!!! CTTTTTTGGCTATGGTTTGT+GGG + tig0022980:49312-49331 Msa1403840:intron 35.0%
! TCCTTTGTTTGTCTCTTCAT+TGG + tig0022980:49340-49359 Msa1403840:intron 35.0%
TCCAATGAAGAGACAAACAA+AGG - tig0022980:49344-49363 None:intergenic 35.0%
!! AGACACATATTGATGGGTTA+GGG + tig0022980:49370-49389 Msa1403840:intron 35.0%
!! GACAAGAGAACAAGGTATTT+TGG + tig0022980:49397-49416 Msa1403840:intron 35.0%
!! ACTCATTTGAGCCCTTATTT+TGG + tig0022980:49428-49447 Msa1403840:intron 35.0%
GAGACGAGCTTATTATTCTA+AGG - tig0022980:49509-49528 None:intergenic 35.0%
ACAATTGCGATTCGAACTAT+TGG + tig0022980:49573-49592 Msa1403840:CDS 35.0%
! CTACTAACTATCTGTTGCTT+TGG + tig0022980:49786-49805 Msa1403840:intron 35.0%
GAGATATGTTGCACTTACAT+TGG + tig0022980:49849-49868 Msa1403840:intron 35.0%
TGTTTCGGATTAAGAAGAGA+TGG + tig0022980:50308-50327 Msa1403840:CDS 35.0%
GTTTCGGATTAAGAAGAGAT+GGG + tig0022980:50309-50328 Msa1403840:CDS 35.0%
AAATTGCAGGAAATTTCGGT+AGG - tig0022980:50349-50368 None:intergenic 35.0%
TATTCTGCAAAGGTGACATT+TGG + tig0022980:50398-50417 Msa1403840:three_prime_UTR 35.0%
AAGTCCATCTAATTCCTTAG+CGG + tig0022980:50438-50457 Msa1403840:three_prime_UTR 35.0%
AGAGTGAGATAAGTGACTAG+TGG + tig0022980:47056-47075 Msa1403840:five_prime_UTR 40.0%
GAGTGAGATAAGTGACTAGT+GGG + tig0022980:47057-47076 Msa1403840:five_prime_UTR 40.0%
CCATAAAATCCAATCCTCAC+CGG + tig0022980:47126-47145 Msa1403840:CDS 40.0%
!! AAGATATGGTTTGTTGACGG+CGG - tig0022980:47178-47197 None:intergenic 40.0%
GAGGCTGTCCAAAAATTTAC+AGG - tig0022980:47278-47297 None:intergenic 40.0%
TTCGATATGAAGCTGATCTG+AGG - tig0022980:47352-47371 None:intergenic 40.0%
!! AACTCTTAACTAGAGCACTG+TGG - tig0022980:47405-47424 None:intergenic 40.0%
GTTAAGAGTTCCATTGACGT+TGG + tig0022980:47415-47434 Msa1403840:CDS 40.0%
TCAACAAGGAGAGGTTACAA+TGG + tig0022980:47477-47496 Msa1403840:CDS 40.0%
TGATAGTTGAAGTGCATAGC+CGG - tig0022980:47521-47540 None:intergenic 40.0%
GCAACTTTCAGATTTCCTCT+AGG + tig0022980:47635-47654 Msa1403840:CDS 40.0%
TGTAACGAAACTTCACCTAG+AGG - tig0022980:47653-47672 None:intergenic 40.0%
TTCGTTACAAGAGAAAGAGG+AGG + tig0022980:47664-47683 Msa1403840:CDS 40.0%
TCAGTCAGTGGGATTCTTAA+AGG + tig0022980:47728-47747 Msa1403840:CDS 40.0%
GAAGTTAAGATACCGCTACA+AGG + tig0022980:47799-47818 Msa1403840:CDS 40.0%
! TTTGACGGGAGAGAAAGTAT+GGG - tig0022980:47983-48002 None:intergenic 40.0%
ATTTGACGGGAGAGAAAGTA+TGG - tig0022980:47984-48003 None:intergenic 40.0%
AAAATACAGCCTCAGGAAGT+AGG + tig0022980:48283-48302 Msa1403840:intron 40.0%
!! TGTGTAGAGTAGCTTTGGAT+GGG - tig0022980:48328-48347 None:intergenic 40.0%
!! TTGTGTAGAGTAGCTTTGGA+TGG - tig0022980:48329-48348 None:intergenic 40.0%
! AACTTGATAATACGGGGATG+TGG + tig0022980:48506-48525 Msa1403840:intron 40.0%
! ACTTGATAATACGGGGATGT+GGG + tig0022980:48507-48526 Msa1403840:intron 40.0%
TAGATTATGCAGCAACCAGT+TGG - tig0022980:49185-49204 None:intergenic 40.0%
TTTGTCTCTTCATTGGAGAG+TGG + tig0022980:49347-49366 Msa1403840:intron 40.0%
AGAGTGGAGACACATATTGA+TGG + tig0022980:49363-49382 Msa1403840:intron 40.0%
GAGTGGAGACACATATTGAT+GGG + tig0022980:49364-49383 Msa1403840:intron 40.0%
!! GAGACACATATTGATGGGTT+AGG + tig0022980:49369-49388 Msa1403840:intron 40.0%
! GGTGTTTCCACTTACCTTTT+TGG + tig0022980:49449-49468 Msa1403840:intron 40.0%
TCTTTGGCCAAAAAGGTAAG+TGG - tig0022980:49459-49478 None:intergenic 40.0%
! TAGAGCATCTTTGGCCAAAA+AGG - tig0022980:49466-49485 None:intergenic 40.0%
TTTGGCCAAAGATGCTCTAT+AGG + tig0022980:49467-49486 Msa1403840:intron 40.0%
AGCTCGTCTCCTTACTAATA+TGG + tig0022980:49519-49538 Msa1403840:intron 40.0%
! TAAAGCTGGTTATGATTCGG+AGG + tig0022980:49637-49656 Msa1403840:CDS 40.0%
AAATGAGACACGTACCCAAA+GGG - tig0022980:49681-49700 None:intergenic 40.0%
AAAATGAGACACGTACCCAA+AGG - tig0022980:49682-49701 None:intergenic 40.0%
!! TCAACAGGAGTATTCACAGA+TGG - tig0022980:49739-49758 None:intergenic 40.0%
!! TAACTATCTGTTGCTTTGGG+TGG + tig0022980:49790-49809 Msa1403840:intron 40.0%
TGCTTCCTTCCTGCATATAA+AGG + tig0022980:49902-49921 Msa1403840:intron 40.0%
AGAAGAGATGGGACATTTGA+TGG + tig0022980:50320-50339 Msa1403840:CDS 40.0%
! GCTAAGGAATTAGATGGACT+TGG - tig0022980:50439-50458 None:intergenic 40.0%
TTTACAGTCACGTTGCAAGA+CGG - tig0022980:50605-50624 None:intergenic 40.0%
TGAGATAAGTGACTAGTGGG+TGG + tig0022980:47060-47079 Msa1403840:five_prime_UTR 45.0%
! CCGGTGAGGATTGGATTTTA+TGG - tig0022980:47129-47148 None:intergenic 45.0%
TAAAATCCAATCCTCACCGG+CGG + tig0022980:47129-47148 Msa1403840:CDS 45.0%
! GAACTCGGTGGTAATTCTGA+GGG - tig0022980:47221-47240 None:intergenic 45.0%
! TATGAAGCTGATCTGAGGCT+CGG - tig0022980:47347-47366 None:intergenic 45.0%
GCACCAGTGAGTTTGAATCT+GGG - tig0022980:47442-47461 None:intergenic 45.0%
AGCACCAGTGAGTTTGAATC+TGG - tig0022980:47443-47462 None:intergenic 45.0%
CATGATGTCAAGGCTCAACA+AGG + tig0022980:47463-47482 Msa1403840:CDS 45.0%
ATAGTTGAAGTGCATAGCCG+GGG - tig0022980:47519-47538 None:intergenic 45.0%
GATAGTTGAAGTGCATAGCC+GGG - tig0022980:47520-47539 None:intergenic 45.0%
! AAGAATCCCACTGACTGACA+AGG - tig0022980:47726-47745 None:intergenic 45.0%
! TGTCATTTGCCTTCAAGCGT+AGG + tig0022980:48008-48027 Msa1403840:CDS 45.0%
TTTGCCTTCAAGCGTAGGTT+TGG + tig0022980:48013-48032 Msa1403840:CDS 45.0%
AAGACCAAACCTACGCTTGA+AGG - tig0022980:48020-48039 None:intergenic 45.0%
TTGTTCCTACCTACTTCCTG+AGG - tig0022980:48295-48314 None:intergenic 45.0%
! CTTGATAATACGGGGATGTG+GGG + tig0022980:48508-48527 Msa1403840:intron 45.0%
ACTACAATGCAAGCACCAAC+TGG + tig0022980:49167-49186 Msa1403840:intron 45.0%
AGGGCTCAAATGAGTGTCTT+AGG - tig0022980:49423-49442 None:intergenic 45.0%
GCTGTCTACAAGCATACCTA+TGG + tig0022980:49599-49618 Msa1403840:CDS 45.0%
! GTGACACATTAGCTTCCTTC+AGG + tig0022980:50186-50205 Msa1403840:intron 45.0%
! CACATTAGCTTCCTTCAGGT+TGG + tig0022980:50190-50209 Msa1403840:intron 45.0%
!! TTCCTTCAGGTTGGTGATGA+AGG + tig0022980:50199-50218 Msa1403840:intron 45.0%
!! TTCAGGTTGGTGATGAAGGT+GGG + tig0022980:50203-50222 Msa1403840:intron 45.0%
CACACCGCTAAGGAATTAGA+TGG - tig0022980:50445-50464 None:intergenic 45.0%
CATCTAATTCCTTAGCGGTG+TGG + tig0022980:50443-50462 Msa1403840:three_prime_UTR 45.0%
!! TCAATTATTAAAAAAAAATA+TGG + tig0022980:50374-50393 Msa1403840:three_prime_UTR 5.0%
!! CAATTATTAAAAAAAAATAT+GGG + tig0022980:50375-50394 Msa1403840:three_prime_UTR 5.0%
! GATAAGTGACTAGTGGGTGG+TGG + tig0022980:47063-47082 Msa1403840:five_prime_UTR 50.0%
! GTGGAGATGGATTCAGCAAC+CGG + tig0022980:47082-47101 Msa1403840:exon 50.0%
!! ATATGGTTTGTTGACGGCGG+CGG - tig0022980:47175-47194 None:intergenic 50.0%
! CGAACTCGGTGGTAATTCTG+AGG - tig0022980:47222-47241 None:intergenic 50.0%
TGTGGTCTTCAAGGTCGTAG+TGG - tig0022980:47387-47406 None:intergenic 50.0%
!! CTAGAGCACTGTGGTCTTCA+AGG - tig0022980:47396-47415 None:intergenic 50.0%
! GAATCTGGGACCAACGTCAA+TGG - tig0022980:47428-47447 None:intergenic 50.0%
GGTCCCAGATTCAAACTCAC+TGG + tig0022980:47436-47455 Msa1403840:CDS 50.0%
CACTGGTGCTCATGATGTCA+AGG + tig0022980:47453-47472 Msa1403840:CDS 50.0%
TGTCAAGGCTCAACAAGGAG+AGG + tig0022980:47468-47487 Msa1403840:CDS 50.0%
GTTGCTAATATCGCTGACCC+CGG + tig0022980:47499-47518 Msa1403840:CDS 50.0%
GAACATACCAATCCAGCGGA+TGG - tig0022980:47553-47572 None:intergenic 50.0%
TACAGCCTCAGGAAGTAGGT+AGG + tig0022980:48287-48306 Msa1403840:intron 50.0%
! TATGATTCGGAGGTTCGCCT+TGG + tig0022980:49647-49666 Msa1403840:CDS 50.0%
CACCTTCATCACCAACCTGA+AGG - tig0022980:50204-50223 None:intergenic 50.0%
!! CTTCAGGTTGGTGATGAAGG+TGG + tig0022980:50202-50221 Msa1403840:intron 50.0%
TAATTCCTTAGCGGTGTGGC+TGG + tig0022980:50447-50466 Msa1403840:three_prime_UTR 50.0%
!! TGACTAGTGGGTGGTGGAGA+TGG + tig0022980:47069-47088 Msa1403840:exon 55.0%
! ATTCTGAGGGCAGGCCTACT+CGG - tig0022980:47208-47227 None:intergenic 55.0%
! TCGGTGGTAATTCTGAGGGC+AGG - tig0022980:47217-47236 None:intergenic 55.0%
TGCGCTTTCGCTGTCGAACT+CGG - tig0022980:47236-47255 None:intergenic 55.0%
! CAAGGTCGTAGTGGAGGCTA+AGG - tig0022980:47378-47397 None:intergenic 55.0%
GGTCTTCAAGGTCGTAGTGG+AGG - tig0022980:47384-47403 None:intergenic 55.0%
ACCAATCCAGCGGATGGAAG+TGG - tig0022980:47547-47566 None:intergenic 55.0%
AGAGAAAGAGGAGGAGCAGC+AGG + tig0022980:47673-47692 Msa1403840:CDS 55.0%
TGTCTGCACTGCCCACTACA+AGG + tig0022980:47766-47785 Msa1403840:CDS 55.0%
!! AGGGCACCGACAAGAGAACA+AGG + tig0022980:49389-49408 Msa1403840:intron 55.0%
CAACTACCGCCGGTGAGGAT+TGG - tig0022980:47138-47157 None:intergenic 60.0%
AGGATCAACTACCGCCGGTG+AGG - tig0022980:47143-47162 None:intergenic 60.0%
GGCAGAGGATCAACTACCGC+CGG - tig0022980:47148-47167 None:intergenic 60.0%
GCTTTCGCTGTCGAACTCGG+TGG - tig0022980:47233-47252 None:intergenic 60.0%
TCAACGCCACTTCCATCCGC+TGG + tig0022980:47538-47557 Msa1403840:CDS 60.0%
GCCACTTCCATCCGCTGGAT+TGG + tig0022980:47543-47562 Msa1403840:CDS 60.0%
GAAAGAGGAGGAGCAGCAGG+AGG + tig0022980:47676-47695 Msa1403840:CDS 60.0%
ATTCGGAGGTTCGCCTTGGC+TGG + tig0022980:49651-49670 Msa1403840:CDS 60.0%
TTCGGAGGTTCGCCTTGGCT+GGG + tig0022980:49652-49671 Msa1403840:CDS 60.0%
CCTTGGCTGGGCATCCCTTT+GGG + tig0022980:49664-49683 Msa1403840:CDS 60.0%
TCTAGCCAGCCACACCGCTA+AGG - tig0022980:50455-50474 None:intergenic 60.0%
!! TGGTTTGTTGACGGCGGCGG+CGG - tig0022980:47172-47191 None:intergenic 65.0%
AGAGGAGGAGCAGCAGGAGG+AGG + tig0022980:47679-47698 Msa1403840:CDS 65.0%
GCCTTGGCTGGGCATCCCTT+TGG + tig0022980:49663-49682 Msa1403840:CDS 65.0%
CCCAAAGGGATGCCCAGCCA+AGG - tig0022980:49667-49686 None:intergenic 65.0%
TTTGTTGACGGCGGCGGCGG+CGG - tig0022980:47169-47188 None:intergenic 70.0%
! GACGGCGGCGGCGGCGGCAG+AGG - tig0022980:47163-47182 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
tig0022980 gene 47028 50664 47028 ID=Msa1403840;Name=Msa1403840
tig0022980 mRNA 47028 50664 47028 ID=Msa1403840-mRNA-1;Parent=Msa1403840;Name=Msa1403840-mRNA-1;_AED=0.08;_eAED=0.08;_QI=60|1|1|1|1|1|5|325|338
tig0022980 exon 47028 47564 47028 ID=Msa1403840-mRNA-1:exon:19480;Parent=Msa1403840-mRNA-1
tig0022980 exon 47629 47820 47629 ID=Msa1403840-mRNA-1:exon:19481;Parent=Msa1403840-mRNA-1
tig0022980 exon 47959 48053 47959 ID=Msa1403840-mRNA-1:exon:19482;Parent=Msa1403840-mRNA-1
tig0022980 exon 49565 49685 49565 ID=Msa1403840-mRNA-1:exon:19483;Parent=Msa1403840-mRNA-1
tig0022980 exon 50208 50664 50208 ID=Msa1403840-mRNA-1:exon:19484;Parent=Msa1403840-mRNA-1
tig0022980 five_prime_UTR 47028 47087 47028 ID=Msa1403840-mRNA-1:five_prime_utr;Parent=Msa1403840-mRNA-1
tig0022980 CDS 47088 47564 47088 ID=Msa1403840-mRNA-1:cds;Parent=Msa1403840-mRNA-1
tig0022980 CDS 47629 47820 47629 ID=Msa1403840-mRNA-1:cds;Parent=Msa1403840-mRNA-1
tig0022980 CDS 47959 48053 47959 ID=Msa1403840-mRNA-1:cds;Parent=Msa1403840-mRNA-1
tig0022980 CDS 49565 49685 49565 ID=Msa1403840-mRNA-1:cds;Parent=Msa1403840-mRNA-1
tig0022980 CDS 50208 50339 50208 ID=Msa1403840-mRNA-1:cds;Parent=Msa1403840-mRNA-1
tig0022980 three_prime_UTR 50340 50664 50340 ID=Msa1403840-mRNA-1:three_prime_utr;Parent=Msa1403840-mRNA-1
Gene Sequence

>Msa1403840

ATGGATTCAGCAACCGGAAACCCTAATAATTACACGCTCCATAAAATCCAATCCTCACCGGCGGTAGTTGATCCTCTGCCGCCGCCGCCGCCGTCAACAAACCATATCTTGTCATTTCCGAGTAGGCCTGCCCTCAGAATTACCACCGAGTTCGACAGCGAAAGCGCAAACTTCTTCCACAAAGTTTCCTGTAAATTTTTGGACAGCCTCGCCAAATTGAAATTATCTTTTCAGAACAACAGTAAAGGCGATATCTCCGAGCCTCAGATCAGCTTCATATCGAAGCACCTTAGCCTCCACTACGACCTTGAAGACCACAGTGCTCTAGTTAAGAGTTCCATTGACGTTGGTCCCAGATTCAAACTCACTGGTGCTCATGATGTCAAGGCTCAACAAGGAGAGGTTACAATGGTTGCTAATATCGCTGACCCCGGCTATGCACTTCAACTATCAACGCCACTTCCATCCGCTGGATTGCCAAAAGCAACTTTCAGATTTCCTCTAGGTGAAGTTTCGTTACAAGAGAAAGAGGAGGAGCAGCAGGAGGAGGAACAAGTCAAGATAAAAAATTCCTTGTCAGTCAGTGGGATTCTTAAAGGTCAATTTTTGAATGGTGTCTGCACTGCCCACTACAAGGATGATGAATTGAAGTTAAGATACCGCTACAAGGACGACGAGATGTCATTTCTTCCCATACTTTCTCTCCCGTCAAATGATTTGTCATTTGCCTTCAAGCGTAGGTTTGGTCTTTCTGACAAGTTAAGTTACTGGTACAATTGCGATTCGAACTATTGGAGTGCTGTCTACAAGCATACCTATGGTGAAGATTTCAAATTTAAAGCTGGTTATGATTCGGAGGTTCGCCTTGGCTGGGCATCCCTTTGGGTTGGTGATGAAGGTGGGAAAGCAAAAACAGCTCCAATGAAGATGAAAGTTCAATTCATGCTTCAAGTGCCACAAGATGACATAAAATCTTCAGTTTTGATGTTTCGGATTAAGAAGAGATGGGACATTTGA

Protein sequence

>Msa1403840

MDSATGNPNNYTLHKIQSSPAVVDPLPPPPPSTNHILSFPSRPALRITTEFDSESANFFHKVSCKFLDSLAKLKLSFQNNSKGDISEPQISFISKHLSLHYDLEDHSALVKSSIDVGPRFKLTGAHDVKAQQGEVTMVANIADPGYALQLSTPLPSAGLPKATFRFPLGEVSLQEKEEEQQEEEQVKIKNSLSVSGILKGQFLNGVCTAHYKDDELKLRYRYKDDEMSFLPILSLPSNDLSFAFKRRFGLSDKLSYWYNCDSNYWSAVYKHTYGEDFKFKAGYDSEVRLGWASLWVGDEGGKAKTAPMKMKVQFMLQVPQDDIKSSVLMFRIKKRWDI*