AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0403360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0403360 MtrunA17_Chr3g0094081 82.332 283 19 4 32 283 7 289 3.14e-165 463
Msa0403360 MtrunA17_Chr5g0441461 55.385 325 91 12 1 283 1 313 2.22e-101 302
Msa0403360 MtrunA17_Chr7g0256121 50.847 236 93 3 70 283 74 308 2.78e-61 199
Msa0403360 MtrunA17_Chr7g0256161 41.485 229 97 6 84 283 10 230 1.58e-42 149
Msa0403360 MtrunA17_Chr7g0256131 37.946 224 111 5 81 282 11 228 1.33e-41 145
Msa0403360 MtrunA17_Chr7g0256151 35.772 246 115 6 66 281 1 233 2.13e-35 128
Msa0403360 MtrunA17_Chr7g0256141 37.118 229 101 6 83 281 19 234 3.71e-35 129
Msa0403360 MtrunA17_Chr6g0465451 34.483 232 109 7 83 284 18 236 2.43e-30 116
Msa0403360 MtrunA17_Chr7g0256061 61.290 62 24 0 70 131 74 135 1.77e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0403360 AT2G32560.2 44.089 313 118 8 1 283 1 286 2.60e-76 236
Msa0403360 AT2G32560.1 44.089 313 118 8 1 283 1 286 6.77e-76 236
Msa0403360 AT2G26850.2 43.910 312 119 8 1 283 1 285 1.62e-72 225
Msa0403360 AT2G26850.1 43.450 313 119 8 1 283 1 285 2.19e-70 222
Msa0403360 AT2G41170.3 44.758 248 97 6 71 283 44 286 6.49e-55 180
Msa0403360 AT2G41170.1 44.758 248 97 6 71 283 44 286 1.20e-53 179
Msa0403360 AT2G41170.2 44.758 248 97 6 71 283 44 286 2.08e-53 179

Find 110 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGGAATTATCATATATTT+AGG 0.232676 3_2:-33157659 Msa0403360:three_prime_UTR
TGGTCCTCTAACTATTTAAT+TGG 0.266222 3_2:+33158290 None:intergenic
TTATTGGTCAAGCTGCTTAT+AGG 0.268138 3_2:-33162863 Msa0403360:CDS
CTATTGAAACTGGCAGCTTC+TGG 0.273408 3_2:-33162647 Msa0403360:CDS
TGAATGTTGAAACGATCTTT+TGG 0.280132 3_2:-33158709 Msa0403360:three_prime_UTR
TGGAAAGGTTTGGAAGAAAA+TGG 0.281968 3_2:-33158683 Msa0403360:three_prime_UTR
TGAGAAGCAATTTACATTGA+TGG 0.293260 3_2:+33157560 None:intergenic
AAGAAATGGGGTGGAGTTAT+TGG 0.308285 3_2:-33162879 Msa0403360:CDS
TATTGGTCAAGCTGCTTATA+GGG 0.310671 3_2:-33162862 Msa0403360:CDS
GGAATATTGATGGGTATGAT+AGG 0.312388 3_2:-33158639 Msa0403360:three_prime_UTR
AGAAAATTTACCTTGCTAGA+AGG 0.316417 3_2:+33162147 None:intergenic
GATGTGTGAGTGATTACTTT+TGG 0.341820 3_2:-33162917 Msa0403360:CDS
TGTGGAAAAGAATATCAAAT+TGG 0.349001 3_2:+33157636 None:intergenic
TGAGAAGAGGAACAAGATTA+TGG 0.361100 3_2:-33158581 Msa0403360:three_prime_UTR
AAGAGTAAGCCAAATGAAAA+AGG 0.362563 3_2:-33158660 Msa0403360:three_prime_UTR
TGGTATCTTGCTATTGAAAC+TGG 0.365562 3_2:-33162657 Msa0403360:CDS
TTACCTTGCTAGAAGGGTAT+TGG 0.378676 3_2:+33162154 None:intergenic
TATACAGTCCAACAATTTCA+AGG 0.385642 3_2:+33158227 None:intergenic
AGAGACACATGAAGAAGAAA+TGG 0.390116 3_2:-33162893 Msa0403360:CDS
ATGGCAAACAAAGTGGGTTA+TGG 0.390808 3_2:-33162791 Msa0403360:CDS
ATGAGAATGAAATTTCCATT+TGG 0.398780 3_2:-33157775 Msa0403360:three_prime_UTR
TGAGGAGAAGTTATCATTGT+TGG 0.399408 3_2:-33163033 Msa0403360:CDS
GGAGACAGACTAGGATCAAT+AGG 0.403977 3_2:-33157862 Msa0403360:three_prime_UTR
TTCTAAAATCATTCCCATCA+TGG 0.405957 3_2:-33163214 Msa0403360:CDS
ATTAATTTCATCCCTTGAAA+AGG 0.407791 3_2:+33162744 None:intergenic
CTATTTAATTGGTATCGGTT+TGG 0.409887 3_2:+33158301 None:intergenic
CAGCATCATAGCAAGATAAC+AGG 0.411746 3_2:+33162198 None:intergenic
CCTCATTTCCTTCTTCCCTA+TGG 0.423036 3_2:+33157834 None:intergenic
GATACCAATTAAATAGTTAG+AGG 0.424501 3_2:-33158294 Msa0403360:three_prime_UTR
CTTAAATATGGCAAACAAAG+TGG 0.431167 3_2:-33162798 Msa0403360:CDS
AAATAGTTAGAGGACCAAAA+AGG 0.431203 3_2:-33158284 Msa0403360:three_prime_UTR
ATTGCATCAAATTTAAATCA+AGG 0.432108 3_2:-33158166 Msa0403360:three_prime_UTR
TGTTTAAATGATTTGCATCC+TGG 0.435950 3_2:-33161698 Msa0403360:CDS
AATTCACACAAGGATGTCTA+TGG 0.439355 3_2:-33163099 Msa0403360:intron
AGTTGTTTAAGAATCACCTT+TGG 0.440891 3_2:-33163139 Msa0403360:CDS
GAAAAGGTCCTTGAAATTGT+TGG 0.442962 3_2:-33158235 Msa0403360:three_prime_UTR
TAGGTTTGAGTTGATAATGA+TGG 0.443366 3_2:-33158543 Msa0403360:three_prime_UTR
TGATCATGTTGAAGAGATTG+AGG 0.446335 3_2:-33163051 Msa0403360:CDS
CTGTTGATTCTGTTATGAAT+TGG 0.447633 3_2:-33162677 Msa0403360:CDS
CAAGAATATATACAACTTGA+AGG 0.453779 3_2:-33157678 Msa0403360:three_prime_UTR
GTCTGTCTCCATCTTGAGCC+AGG 0.453925 3_2:+33157875 None:intergenic
GAAAATTTACCTTGCTAGAA+GGG 0.455807 3_2:+33162148 None:intergenic
TCTAACTATTTAATTGGTAT+CGG 0.457559 3_2:+33158296 None:intergenic
GAGACACATGAAGAAGAAAT+GGG 0.464075 3_2:-33162892 Msa0403360:CDS
CACATCTCTCCCTCAATGAA+TGG 0.467643 3_2:+33162934 None:intergenic
GAAATGATAGCTGCAATCAT+AGG 0.468430 3_2:-33162710 Msa0403360:CDS
ACGGAGTTATTTAGTGCAGA+TGG 0.468790 3_2:-33157995 Msa0403360:three_prime_UTR
TTTGTTTATAATATCAGAGA+TGG 0.473229 3_2:-33158130 Msa0403360:three_prime_UTR
AAATAAATAAATACCGGAAA+AGG 0.473372 3_2:-33158251 Msa0403360:three_prime_UTR
TTTAAGAATCACCTTTGGAT+TGG 0.474459 3_2:-33163134 Msa0403360:CDS
TCATGTGGAGAGATATCAAC+AGG 0.476304 3_2:+33161737 None:intergenic
GTGTTGTAGAATGGTCATCT+TGG 0.481169 3_2:-33162224 Msa0403360:intron
GTCAAGCTGCTTATAGGGAA+TGG 0.482088 3_2:-33162857 Msa0403360:CDS
TGGCCACATGCGTTTCCAAA+TGG 0.484507 3_2:+33157760 None:intergenic
CGGAGTTATTTAGTGCAGAT+GGG 0.486119 3_2:-33157994 Msa0403360:three_prime_UTR
GGACTTGCCAGAGCTAACTT+TGG 0.486829 3_2:-33163012 Msa0403360:CDS
CTGCTTATAGGGAATGGAAA+TGG 0.494975 3_2:-33162851 Msa0403360:CDS
GGTGTTGGGAGTCTTAAATA+TGG 0.497305 3_2:-33162810 Msa0403360:CDS
AGGAAAGACCATAGGGAAGA+AGG 0.498899 3_2:-33157842 Msa0403360:three_prime_UTR
CATGTGGCCATCTGAAGTCT+TGG 0.498956 3_2:-33157747 Msa0403360:three_prime_UTR
AGTAACGGTGACAAAGTTAG+AGG 0.499028 3_2:-33158354 Msa0403360:three_prime_UTR
TGGTGTTTGCCATTCATTGA+GGG 0.502353 3_2:-33162943 Msa0403360:CDS
CAAGGGATGAAATTAATGGT+TGG 0.513850 3_2:-33162738 Msa0403360:CDS
GGATCAATAGGAAAGACCAT+AGG 0.516464 3_2:-33157850 Msa0403360:three_prime_UTR
AAACTAAGTGATTATTGTAG+AGG 0.520541 3_2:-33158103 Msa0403360:three_prime_UTR
AACTAAGTGATTATTGTAGA+GGG 0.525828 3_2:-33158102 Msa0403360:three_prime_UTR
AAGGTGATTCTTAAACAACT+TGG 0.529166 3_2:+33163142 None:intergenic
TTAGCCAAATAAATAAATAC+CGG 0.536517 3_2:-33158257 Msa0403360:three_prime_UTR
CAATTCATAACAGAATCAAC+AGG 0.536613 3_2:+33162678 None:intergenic
TGAATCTCTATGTGATTGCC+AGG 0.537023 3_2:+33161680 None:intergenic
ATGCATTCCAAAGTTAGCTC+TGG 0.537840 3_2:+33163005 None:intergenic
GAATATTGATGGGTATGATA+GGG 0.538460 3_2:-33158638 Msa0403360:three_prime_UTR
GTTTGAGTTGATAATGATGG+AGG 0.551351 3_2:-33158540 Msa0403360:three_prime_UTR
TACTAATCCAAGACTTCAGA+TGG 0.551802 3_2:+33157740 None:intergenic
GATCAATAGGAAAGACCATA+GGG 0.556971 3_2:-33157849 Msa0403360:three_prime_UTR
TCACGGTTATAGACTTGAGC+AGG 0.560717 3_2:+33162621 None:intergenic
ACTAATTTAGAATTGAGAAG+AGG 0.563122 3_2:-33158594 Msa0403360:three_prime_UTR
TTTGAATAAATCTGACGGAA+AGG 0.563526 3_2:-33158386 Msa0403360:three_prime_UTR
ATTACACTCCTGGCTCAAGA+TGG 0.564696 3_2:-33157883 Msa0403360:three_prime_UTR
GAGTTCAACCATTACACTCC+TGG 0.567077 3_2:-33157893 Msa0403360:three_prime_UTR
TTGGATAACAACAAATCAGA+AGG 0.569451 3_2:-33158074 Msa0403360:three_prime_UTR
ACTAAGTGATTATTGTAGAG+GGG 0.572868 3_2:-33158101 Msa0403360:three_prime_UTR
CTGGTGTTTGCCATTCATTG+AGG 0.574818 3_2:-33162944 Msa0403360:CDS
AAGAATATATACAACTTGAA+GGG 0.575309 3_2:-33157677 Msa0403360:three_prime_UTR
ATCTTGAGCCAGGAGTGTAA+TGG 0.578616 3_2:+33157885 None:intergenic
GAAGAAGGAAATGAGGCTGA+TGG 0.579595 3_2:-33157827 Msa0403360:three_prime_UTR
CTAAGTGATTATTGTAGAGG+GGG 0.581108 3_2:-33158100 Msa0403360:three_prime_UTR
TTAAATATGGCAAACAAAGT+GGG 0.582651 3_2:-33162797 Msa0403360:CDS
CAAAATTTGAATAAATCTGA+CGG 0.582697 3_2:-33158391 Msa0403360:three_prime_UTR
ATGAAATTAATGGTTGGTGA+TGG 0.589442 3_2:-33162732 Msa0403360:CDS
TTTCCATTTGGAAACGCATG+TGG 0.589957 3_2:-33157763 Msa0403360:three_prime_UTR
GGAGTTATTTAGTGCAGATG+GGG 0.590114 3_2:-33157993 Msa0403360:three_prime_UTR
TACTTTGTCAAATTCACACA+AGG 0.593265 3_2:-33163109 Msa0403360:CDS
GCTCAAGATGGAGACAGACT+AGG 0.596676 3_2:-33157871 Msa0403360:three_prime_UTR
GCAATCACATAGAGATTCAG+TGG 0.599756 3_2:-33161676 Msa0403360:CDS
GAAGAGGAACAAGATTATGG+TGG 0.604516 3_2:-33158578 Msa0403360:three_prime_UTR
CCATAGGGAAGAAGGAAATG+AGG 0.610009 3_2:-33157834 Msa0403360:three_prime_UTR
GACAAAGTAAACCAATCCAA+AGG 0.614893 3_2:+33163123 None:intergenic
CACATGAAGAAGAAATGGGG+TGG 0.618879 3_2:-33162888 Msa0403360:CDS
TCAGAGATATGAAGATCATG+TGG 0.622183 3_2:+33161722 None:intergenic
GAACCAATACCCTTCTAGCA+AGG 0.643683 3_2:-33162157 Msa0403360:intron
GAGTTATTTAGTGCAGATGG+GGG 0.648090 3_2:-33157992 Msa0403360:three_prime_UTR
GTATGATAGGGAAATTGCAG+TGG 0.662662 3_2:-33158626 Msa0403360:three_prime_UTR
TGGATAACAACAAATCAGAA+GGG 0.662974 3_2:-33158073 Msa0403360:three_prime_UTR
TAAGTGATTATTGTAGAGGG+GGG 0.682763 3_2:-33158099 Msa0403360:three_prime_UTR
AATGGGTGATAACCACAATG+TGG 0.685695 3_2:+33157618 None:intergenic
GAAAGGACGAAAAGCAGTAA+CGG 0.686911 3_2:-33158369 Msa0403360:three_prime_UTR
AGACACATGAAGAAGAAATG+GGG 0.695841 3_2:-33162891 Msa0403360:CDS
ATCACATAGAGATTCAGTGG+AGG 0.714698 3_2:-33161673 Msa0403360:CDS
TGTGGAGAGATATCAACAGG+AGG 0.726181 3_2:+33161740 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATTTCAACATTTTTAT+CGG - chr3_2:33160058-33160077 Msa0403360:intron 10.0%
!! ATTATAAATATATCAAAATG+TGG - chr3_2:33161050-33161069 Msa0403360:intron 10.0%
!!! TTTTAAGAATGAAATTTAAA+AGG - chr3_2:33161354-33161373 Msa0403360:intron 10.0%
!! TTTAAGAATGAAATTTAAAA+GGG - chr3_2:33161355-33161374 Msa0403360:intron 10.0%
!!! ATGAAAATTTTGAAATAAAT+AGG - chr3_2:33161479-33161498 Msa0403360:intron 10.0%
!!! AACTAAAAATTGATTTATTT+CGG - chr3_2:33161556-33161575 Msa0403360:intron 10.0%
!!! AGTTTTATTAAAAAAACATT+AGG - chr3_2:33161622-33161641 Msa0403360:intron 10.0%
!!! GTTTTATTAAAAAAACATTA+GGG - chr3_2:33161623-33161642 Msa0403360:intron 10.0%
!!! AACTAAAAATTGATTTATTT+CGG + chr3_2:33161556-33161575 None:intergenic 10.0%
!!! AATTTTCATAACAAATTAGA+TGG + chr3_2:33158420-33158439 None:intergenic 15.0%
!!! TTATTTTCAATGGAATTTAA+TGG - chr3_2:33158534-33158553 Msa0403360:three_prime_UTR 15.0%
!! GAATCTATTATGTATTAAAT+TGG - chr3_2:33158738-33158757 Msa0403360:CDS 15.0%
!! TAGTTAATAGAATTAATACA+TGG + chr3_2:33159229-33159248 None:intergenic 15.0%
!!! AATTATGAGAAATGATATTT+TGG - chr3_2:33159616-33159635 Msa0403360:intron 15.0%
!!! TATTTTATTAACCTTATGAA+TGG - chr3_2:33160110-33160129 Msa0403360:intron 15.0%
!! AAAGATAATACTAAAAATGA+CGG - chr3_2:33160603-33160622 Msa0403360:intron 15.0%
!! TCTAAATATATATCAAAATG+TGG - chr3_2:33161014-33161033 Msa0403360:intron 15.0%
!! GGAACAAATATAAAATTTAA+TGG + chr3_2:33161201-33161220 None:intergenic 15.0%
!!! ATAAATCAATTTTTAGTTAG+AGG + chr3_2:33162496-33162515 None:intergenic 15.0%
!!! TGTTTTTTTAATAAAACTGA+CGG + chr3_2:33161620-33161639 None:intergenic 15.0%
!!! ATTTATGTTGTTTGTTTTTT+TGG - chr3_2:33162312-33162331 Msa0403360:intron 15.0%
!!! GATTTATTCAAATTTTGTTA+GGG + chr3_2:33162427-33162446 None:intergenic 15.0%
!!! AGATTTATTCAAATTTTGTT+AGG + chr3_2:33162428-33162447 None:intergenic 15.0%
!!! ATAAATCAATTTTTAGTTAG+AGG - chr3_2:33162496-33162515 Msa0403360:intron 15.0%
!! ATTAATGTAGTTCAAATAAG+TGG - chr3_2:33158301-33158320 Msa0403360:three_prime_UTR 20.0%
!!! ATCAATTGCTTTATTTTCAA+TGG - chr3_2:33158524-33158543 Msa0403360:three_prime_UTR 20.0%
!! CAAGACAAAATTTCTATTTA+TGG + chr3_2:33158843-33158862 None:intergenic 20.0%
!!! TGGTAAGATTTTATCAAAAA+TGG + chr3_2:33158905-33158924 None:intergenic 20.0%
!! ATTGGTTAAACAACTTAAAA+TGG + chr3_2:33158925-33158944 None:intergenic 20.0%
!!! ATTAAATGATTGCTTGTTAT+AGG - chr3_2:33158995-33159014 Msa0403360:intron 20.0%
!! AGAAAAAAAGAATTTCCTTA+TGG - chr3_2:33159171-33159190 Msa0403360:intron 20.0%
!! TACATGGAATTAAAAAATGA+TGG + chr3_2:33159213-33159232 None:intergenic 20.0%
!! GTTCAAAAATTGTCAAAAAA+TGG + chr3_2:33159454-33159473 None:intergenic 20.0%
!!! TTTTTATTGGTCAAAAACAA+TGG + chr3_2:33159534-33159553 None:intergenic 20.0%
!!! TTGTTTTTCTCTCTTTTTAT+TGG + chr3_2:33159547-33159566 None:intergenic 20.0%
!! AATAAAAAGAGAGAAAAACA+AGG - chr3_2:33159546-33159565 Msa0403360:intron 20.0%
!! GTCACAATAATCTTAAAAAA+AGG - chr3_2:33159658-33159677 Msa0403360:intron 20.0%
!! CTATCTAAAAAAACTATCAA+AGG + chr3_2:33159958-33159977 None:intergenic 20.0%
!!! TTCTTATTGGTTAAAAACAA+TGG - chr3_2:33160311-33160330 Msa0403360:intron 20.0%
!! ATAAATACCAATCATACAAA+AGG + chr3_2:33160441-33160460 None:intergenic 20.0%
!! TGAAACTATTCAACTAAAAT+GGG + chr3_2:33160512-33160531 None:intergenic 20.0%
!! ATGAAACTATTCAACTAAAA+TGG + chr3_2:33160513-33160532 None:intergenic 20.0%
!! TGTTTATAAAGATACCATAT+TGG - chr3_2:33160776-33160795 Msa0403360:intron 20.0%
!! TAATCAACCATTATCATATT+GGG - chr3_2:33160896-33160915 Msa0403360:intron 20.0%
!! ACATGTATTTATATGTTTCA+CGG + chr3_2:33161271-33161290 None:intergenic 20.0%
!! TCTAACTATTTAATTGGTAT+CGG - chr3_2:33161522-33161541 Msa0403360:intron 20.0%
!! AAAATTGAATGATACAAATC+TGG - chr3_2:33161710-33161729 Msa0403360:CDS 20.0%
!!! TGATTTTTTTTCTTTGTTGT+TGG - chr3_2:33161737-33161756 Msa0403360:CDS 20.0%
!!! GATTTTTTTTCTTTGTTGTT+GGG - chr3_2:33161738-33161757 Msa0403360:CDS 20.0%
!!! AATCTTAAATCCCTAATTTT+CGG - chr3_2:33161814-33161833 Msa0403360:intron 20.0%
!!! AATCTTTATTCCCTAATTTT+CGG - chr3_2:33161922-33161941 Msa0403360:intron 20.0%
!!! ATCAATATTCCTTTTTCATT+TGG + chr3_2:33162173-33162192 None:intergenic 20.0%
!! AAATGAAAAAGGAATATTGA+TGG - chr3_2:33162172-33162191 Msa0403360:CDS 20.0%
!! AATGAAAAAGGAATATTGAT+GGG - chr3_2:33162173-33162192 Msa0403360:CDS 20.0%
!!! TGTTTTTTTGGTTATTTTTC+TGG - chr3_2:33162324-33162343 Msa0403360:intron 20.0%
!! CAAAATTTGAATAAATCTGA+CGG - chr3_2:33162430-33162449 Msa0403360:intron 20.0%
!! TTAGCCAAATAAATAAATAC+CGG - chr3_2:33162564-33162583 Msa0403360:intron 20.0%
!!! TTTTCCGGTATTTATTTATT+TGG + chr3_2:33162571-33162590 None:intergenic 20.0%
!! AAATAAATAAATACCGGAAA+AGG - chr3_2:33162570-33162589 Msa0403360:intron 20.0%
!! ATTGCATCAAATTTAAATCA+AGG - chr3_2:33162655-33162674 Msa0403360:CDS 20.0%
!! TTTGTTTATAATATCAGAGA+TGG - chr3_2:33162691-33162710 Msa0403360:CDS 20.0%
!! AATATAACGTAAAAAGTAGT+GGG + chr3_2:33162862-33162881 None:intergenic 20.0%
!! AAATATAACGTAAAAAGTAG+TGG + chr3_2:33162863-33162882 None:intergenic 20.0%
!!! CTTTTTACGTTATATTTGTT+AGG - chr3_2:33162866-33162885 Msa0403360:CDS 20.0%
!! AAGAATATATACAACTTGAA+GGG - chr3_2:33163144-33163163 Msa0403360:CDS 20.0%
!! AAGGGAATTATCATATATTT+AGG - chr3_2:33163162-33163181 Msa0403360:CDS 20.0%
!! TAAACTTTGTCTAGAAAAAT+GGG + chr3_2:33163223-33163242 None:intergenic 20.0%
!! ATAAACTTTGTCTAGAAAAA+TGG + chr3_2:33163224-33163243 None:intergenic 20.0%
! TTAAATATGGCAAACAAAGT+GGG - chr3_2:33158024-33158043 Msa0403360:three_prime_UTR 25.0%
!! TGAAAATTTTCTCTCTTCTT+TGG - chr3_2:33158054-33158073 Msa0403360:three_prime_UTR 25.0%
! ATTAATTTCATCCCTTGAAA+AGG + chr3_2:33158080-33158099 None:intergenic 25.0%
!!! TTTTCAAGGGATGAAATTAA+TGG - chr3_2:33158079-33158098 Msa0403360:three_prime_UTR 25.0%
! CCTAAAAAAAAATGACCAAA+GGG + chr3_2:33158240-33158259 None:intergenic 25.0%
!!! CCTTTGGTCATTTTTTTTTA+GGG - chr3_2:33158238-33158257 Msa0403360:three_prime_UTR 25.0%
!!! GTCATTTTTTTTTAGGGAAA+TGG - chr3_2:33158244-33158263 Msa0403360:three_prime_UTR 25.0%
! GTTAATACAGTTCAAATATG+TGG + chr3_2:33158398-33158417 None:intergenic 25.0%
!! TTTCTCACATGTTACAATTT+TGG - chr3_2:33158563-33158582 Msa0403360:three_prime_UTR 25.0%
!!! AAAGAATGTTCTAAGAACAT+TGG + chr3_2:33158943-33158962 None:intergenic 25.0%
! ATGGAATTAAAAAATGATGG+TGG + chr3_2:33159210-33159229 None:intergenic 25.0%
!! CTTTTCTTTTCTTAAGATAG+AGG + chr3_2:33159254-33159273 None:intergenic 25.0%
! TAAAGATTATTGTGACTTGA+GGG + chr3_2:33159871-33159890 None:intergenic 25.0%
! TTAAAGATTATTGTGACTTG+AGG + chr3_2:33159872-33159891 None:intergenic 25.0%
! AAACTATCAAAGGTTTATAG+TGG + chr3_2:33159948-33159967 None:intergenic 25.0%
! GTCAAAATATCAATACTCAA+AGG + chr3_2:33160248-33160267 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG - chr3_2:33160298-33160317 Msa0403360:intron 25.0%
! GAAACTATTCAACTAAAATG+GGG + chr3_2:33160511-33160530 None:intergenic 25.0%
! TAAAAGATTCCACATATGTA+GGG + chr3_2:33160557-33160576 None:intergenic 25.0%
!! TACATATGTGGAATCTTTTA+GGG - chr3_2:33160557-33160576 Msa0403360:intron 25.0%
!!! TTATTGGTTTGATCCTTTTT+CGG + chr3_2:33160741-33160760 None:intergenic 25.0%
! TTTCTATCATCAAAATTCCT+AGG + chr3_2:33160822-33160841 None:intergenic 25.0%
!!! AGGAATTTTGATGATAGAAA+TGG - chr3_2:33160822-33160841 Msa0403360:intron 25.0%
!!! TAGAAATGGACTGAAAATTA+TGG - chr3_2:33160836-33160855 Msa0403360:intron 25.0%
! GTAATCAACCATTATCATAT+TGG - chr3_2:33160895-33160914 Msa0403360:intron 25.0%
! AATCAACCATTATCATATTG+GGG - chr3_2:33160897-33160916 Msa0403360:intron 25.0%
!! ATTTTCAGTAGGTATCTTTA+CGG - chr3_2:33160983-33161002 Msa0403360:intron 25.0%
! AATAGCATAATAAGTCTAAG+TGG + chr3_2:33161077-33161096 None:intergenic 25.0%
!! TTTAATGGATGAACATAGTT+AGG + chr3_2:33161186-33161205 None:intergenic 25.0%
!!! ATTTTTGATTTTGTCAACTG+AGG + chr3_2:33161222-33161241 None:intergenic 25.0%
! TACATGTGTTCATAAAACAT+TGG - chr3_2:33161284-33161303 Msa0403360:intron 25.0%
!! AATAGGCTAAATTACCTTTT+TGG - chr3_2:33161496-33161515 Msa0403360:intron 25.0%
! GATACCAATTAAATAGTTAG+AGG + chr3_2:33162527-33162546 None:intergenic 25.0%
!! TTTTAATAAAACTGACGGAA+AGG + chr3_2:33161615-33161634 None:intergenic 25.0%
!! GAAAATTAGGGATTTAAGAT+TGG + chr3_2:33161815-33161834 None:intergenic 25.0%
!!! AATGGATTTCGATTTTGAAA+GGG - chr3_2:33161890-33161909 Msa0403360:intron 25.0%
!!! TTATACAGTTTTTGGAATAG+TGG - chr3_2:33161955-33161974 Msa0403360:intron 25.0%
!!! TATACAGTTTTTGGAATAGT+GGG - chr3_2:33161956-33161975 Msa0403360:intron 25.0%
!!! GTTTCTTGTTTTCGAAATTT+GGG - chr3_2:33161979-33161998 Msa0403360:intron 25.0%
!!! TTTTGTTTTTATGCAGCAAA+TGG - chr3_2:33162062-33162081 Msa0403360:intron 25.0%
!! ACTAATTTAGAATTGAGAAG+AGG - chr3_2:33162227-33162246 Msa0403360:intron 25.0%
!! ATTTGGCTAAATTACCTTTT+TGG + chr3_2:33162554-33162573 None:intergenic 25.0%
! AAACTAAGTGATTATTGTAG+AGG - chr3_2:33162718-33162737 Msa0403360:CDS 25.0%
! AACTAAGTGATTATTGTAGA+GGG - chr3_2:33162719-33162738 Msa0403360:CDS 25.0%
!! TTTTTGAATCAACTCAAAGA+CGG - chr3_2:33162807-33162826 Msa0403360:CDS 25.0%
! ATATAACGTAAAAAGTAGTG+GGG + chr3_2:33162861-33162880 None:intergenic 25.0%
! ATGAGAATGAAATTTCCATT+TGG - chr3_2:33163046-33163065 Msa0403360:CDS 25.0%
! TCTTGTAAAAAACAAAGTCA+TGG + chr3_2:33163128-33163147 None:intergenic 25.0%
! CAAGAATATATACAACTTGA+AGG - chr3_2:33163143-33163162 Msa0403360:CDS 25.0%
! TGTGGAAAAGAATATCAAAT+TGG + chr3_2:33163188-33163207 None:intergenic 25.0%
!! AAAGTTTATGTGTACGTTTT+TGG - chr3_2:33163235-33163254 Msa0403360:CDS 25.0%
!! TTCTAAAATCATTCCCATCA+TGG - chr3_2:33157607-33157626 Msa0403360:three_prime_UTR 30.0%
! CATTTTCATTTGTCCATGAT+GGG + chr3_2:33157623-33157642 None:intergenic 30.0%
! TCATTTTCATTTGTCCATGA+TGG + chr3_2:33157624-33157643 None:intergenic 30.0%
! ATGTTTTCAAAGACAACACT+TGG + chr3_2:33157656-33157675 None:intergenic 30.0%
AAGGTGATTCTTAAACAACT+TGG + chr3_2:33157682-33157701 None:intergenic 30.0%
AGTTGTTTAAGAATCACCTT+TGG - chr3_2:33157682-33157701 Msa0403360:three_prime_UTR 30.0%
TTTAAGAATCACCTTTGGAT+TGG - chr3_2:33157687-33157706 Msa0403360:three_prime_UTR 30.0%
TACTTTGTCAAATTCACACA+AGG - chr3_2:33157712-33157731 Msa0403360:three_prime_UTR 30.0%
ATTTGAAAAAGTGAAGAAGG+AGG + chr3_2:33157855-33157874 None:intergenic 30.0%
!!! TCCTTCTTCACTTTTTCAAA+TGG - chr3_2:33157854-33157873 Msa0403360:three_prime_UTR 30.0%
!! ATGTGTGAGTGATTACTTTT+GGG - chr3_2:33157905-33157924 Msa0403360:three_prime_UTR 30.0%
CTTAAATATGGCAAACAAAG+TGG - chr3_2:33158023-33158042 Msa0403360:three_prime_UTR 30.0%
!! ATGAAATTAATGGTTGGTGA+TGG - chr3_2:33158089-33158108 Msa0403360:three_prime_UTR 30.0%
CAATTCATAACAGAATCAAC+AGG + chr3_2:33158146-33158165 None:intergenic 30.0%
!! CTGTTGATTCTGTTATGAAT+TGG - chr3_2:33158144-33158163 Msa0403360:three_prime_UTR 30.0%
!!! CCCTTTGGTCATTTTTTTTT+AGG - chr3_2:33158237-33158256 Msa0403360:three_prime_UTR 30.0%
CCCTAAAAAAAAATGACCAA+AGG + chr3_2:33158241-33158260 None:intergenic 30.0%
GATGGCTAATGAATATAACA+AGG - chr3_2:33158340-33158359 Msa0403360:three_prime_UTR 30.0%
! AATTTTTGCAGCTAACAGTA+TGG + chr3_2:33158502-33158521 None:intergenic 30.0%
!! ACATGTTACAATTTTGGTGT+TGG - chr3_2:33158569-33158588 Msa0403360:three_prime_UTR 30.0%
GAAAATTTACCTTGCTAGAA+GGG + chr3_2:33158676-33158695 None:intergenic 30.0%
AGAAAATTTACCTTGCTAGA+AGG + chr3_2:33158677-33158696 None:intergenic 30.0%
ATTTGAGTATCAACCAGATA+AGG - chr3_2:33158777-33158796 Msa0403360:intron 30.0%
! TGTTTAAATGATTTGCATCC+TGG - chr3_2:33159123-33159142 Msa0403360:intron 30.0%
!! TAAAAAATGATGGTGGAGAA+AGG + chr3_2:33159203-33159222 None:intergenic 30.0%
! TCTGACATTTGTGTTATTAG+AGG + chr3_2:33159281-33159300 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr3_2:33160324-33160343 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG - chr3_2:33159572-33159591 Msa0403360:intron 30.0%
! TTTATCGGTTGAATCACTAT+AGG - chr3_2:33160073-33160092 Msa0403360:intron 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr3_2:33159572-33159591 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG - chr3_2:33160324-33160343 Msa0403360:intron 30.0%
!!! AACCACTTTTTGACAACTTT+TGG + chr3_2:33160396-33160415 None:intergenic 30.0%
! CTCATTTCCTTTTGTATGAT+TGG - chr3_2:33160431-33160450 Msa0403360:intron 30.0%
CTAAAAGATTCCACATATGT+AGG + chr3_2:33160558-33160577 None:intergenic 30.0%
! CTACATATGTGGAATCTTTT+AGG - chr3_2:33160556-33160575 Msa0403360:intron 30.0%
! ACATATGTGGAATCTTTTAG+GGG - chr3_2:33160558-33160577 Msa0403360:intron 30.0%
TAATACTAAAAATGACGGTG+AGG - chr3_2:33160608-33160627 Msa0403360:intron 30.0%
! CTTTCTTTTAGTCACCAATA+TGG + chr3_2:33160793-33160812 None:intergenic 30.0%
CTAAAAGAAAGATATTGCCT+AGG - chr3_2:33160802-33160821 Msa0403360:intron 30.0%
ATAACTCCCCAATATGATAA+TGG + chr3_2:33160906-33160925 None:intergenic 30.0%
! TTAATTTGAATGACCAGATC+AGG - chr3_2:33160955-33160974 Msa0403360:intron 30.0%
! GACTTATTATGCTATTTGAG+TGG - chr3_2:33161081-33161100 Msa0403360:intron 30.0%
AGAAATTATCAATGTGTTGG+TGG + chr3_2:33161143-33161162 None:intergenic 30.0%
GACAGAAATTATCAATGTGT+TGG + chr3_2:33161146-33161165 None:intergenic 30.0%
!!! TGTTTTGAAAACTCCATACT+TGG - chr3_2:33161318-33161337 Msa0403360:intron 30.0%
AAATAGTTAGAGGACCAAAA+AGG + chr3_2:33162537-33162556 None:intergenic 30.0%
TGGTCCTCTAACTATTTAAT+TGG - chr3_2:33161516-33161535 Msa0403360:intron 30.0%
!! CTATTTAATTGGTATCGGTT+TGG - chr3_2:33161527-33161546 Msa0403360:intron 30.0%
CAATCGAAATCCGAAAATTA+GGG + chr3_2:33161827-33161846 None:intergenic 30.0%
TCAATCGAAATCCGAAAATT+AGG + chr3_2:33161828-33161847 None:intergenic 30.0%
! AATTTTCGGATTTCGATTGA+AGG - chr3_2:33161828-33161847 Msa0403360:intron 30.0%
CGATTGAAGGAAAAACAATA+CGG - chr3_2:33161841-33161860 Msa0403360:intron 30.0%
!! CAATGGATTTCGATTTTGAA+AGG - chr3_2:33161889-33161908 Msa0403360:intron 30.0%
!! TCTGGGTTTTATACAGTTTT+TGG - chr3_2:33161947-33161966 Msa0403360:intron 30.0%
!!! ATACAGTTTTTGGAATAGTG+GGG - chr3_2:33161957-33161976 Msa0403360:intron 30.0%
!!! GGTTTCTTGTTTTCGAAATT+TGG - chr3_2:33161978-33161997 Msa0403360:intron 30.0%
! TTTGGGATTGTTACAAGTTA+TGG - chr3_2:33161996-33162015 Msa0403360:intron 30.0%
! TGAATGTTGAAACGATCTTT+TGG - chr3_2:33162112-33162131 Msa0403360:intron 30.0%
AAGAGTAAGCCAAATGAAAA+AGG - chr3_2:33162161-33162180 Msa0403360:CDS 30.0%
! GAATATTGATGGGTATGATA+GGG - chr3_2:33162183-33162202 Msa0403360:CDS 30.0%
!! ATGGTGGAATGAATGATTTT+AGG - chr3_2:33162259-33162278 Msa0403360:intron 30.0%
!! TAGGTTTGAGTTGATAATGA+TGG - chr3_2:33162278-33162297 Msa0403360:intron 30.0%
TTTGAATAAATCTGACGGAA+AGG - chr3_2:33162435-33162454 Msa0403360:intron 30.0%
TATACAGTCCAACAATTTCA+AGG + chr3_2:33162597-33162616 None:intergenic 30.0%
ACTAAGTGATTATTGTAGAG+GGG - chr3_2:33162720-33162739 Msa0403360:CDS 30.0%
TTGGATAACAACAAATCAGA+AGG - chr3_2:33162747-33162766 Msa0403360:CDS 30.0%
TGGATAACAACAAATCAGAA+GGG - chr3_2:33162748-33162767 Msa0403360:CDS 30.0%
GTAAAAAACAAAGTCATGGT+AGG + chr3_2:33163124-33163143 None:intergenic 30.0%
! TGATATTCTTTTCCACATTG+TGG - chr3_2:33163191-33163210 Msa0403360:CDS 30.0%
TGAGAAGCAATTTACATTGA+TGG + chr3_2:33163264-33163283 None:intergenic 30.0%
GACAAAGTAAACCAATCCAA+AGG + chr3_2:33157701-33157720 None:intergenic 35.0%
AATTCACACAAGGATGTCTA+TGG - chr3_2:33157722-33157741 Msa0403360:three_prime_UTR 35.0%
TGATCATGTTGAAGAGATTG+AGG - chr3_2:33157770-33157789 Msa0403360:three_prime_UTR 35.0%
TGAGGAGAAGTTATCATTGT+TGG - chr3_2:33157788-33157807 Msa0403360:three_prime_UTR 35.0%
GCCATTTGAAAAAGTGAAGA+AGG + chr3_2:33157858-33157877 None:intergenic 35.0%
!!! TCTTCACTTTTTCAAATGGC+TGG - chr3_2:33157858-33157877 Msa0403360:three_prime_UTR 35.0%
! GATGTGTGAGTGATTACTTT+TGG - chr3_2:33157904-33157923 Msa0403360:three_prime_UTR 35.0%
AGAGACACATGAAGAAGAAA+TGG - chr3_2:33157928-33157947 Msa0403360:three_prime_UTR 35.0%
GAGACACATGAAGAAGAAAT+GGG - chr3_2:33157929-33157948 Msa0403360:three_prime_UTR 35.0%
AGACACATGAAGAAGAAATG+GGG - chr3_2:33157930-33157949 Msa0403360:three_prime_UTR 35.0%
TTATTGGTCAAGCTGCTTAT+AGG - chr3_2:33157958-33157977 Msa0403360:three_prime_UTR 35.0%
TATTGGTCAAGCTGCTTATA+GGG - chr3_2:33157959-33157978 Msa0403360:three_prime_UTR 35.0%
! ATGGCATGTTGCTTCAAAAA+AGG - chr3_2:33157989-33158008 Msa0403360:three_prime_UTR 35.0%
! TGGCATGTTGCTTCAAAAAA+GGG - chr3_2:33157990-33158009 Msa0403360:three_prime_UTR 35.0%
!! TTGCTTCAAAAAAGGGTGTT+GGG - chr3_2:33157997-33158016 Msa0403360:three_prime_UTR 35.0%
CAAGGGATGAAATTAATGGT+TGG - chr3_2:33158083-33158102 Msa0403360:three_prime_UTR 35.0%
GAAATGATAGCTGCAATCAT+AGG - chr3_2:33158111-33158130 Msa0403360:three_prime_UTR 35.0%
!! TGGTATCTTGCTATTGAAAC+TGG - chr3_2:33158164-33158183 Msa0403360:three_prime_UTR 35.0%
GGTTAACGCAATTTAGTAGA+TGG - chr3_2:33158322-33158341 Msa0403360:three_prime_UTR 35.0%
!!! TACAATTTTGGTGTTGGTGT+TGG - chr3_2:33158575-33158594 Msa0403360:three_prime_UTR 35.0%
!! TGCTTAAGTGTGTCATTTCA+TGG - chr3_2:33158716-33158735 Msa0403360:exon 35.0%
TGGTTAACAAGATCCTTATC+TGG + chr3_2:33158793-33158812 None:intergenic 35.0%
ATTTCTTAGCCCATAATTCC+GGG + chr3_2:33158820-33158839 None:intergenic 35.0%
GATTTCTTAGCCCATAATTC+CGG + chr3_2:33158821-33158840 None:intergenic 35.0%
TGTTATAGGTATCCTTCACA+TGG - chr3_2:33159009-33159028 Msa0403360:intron 35.0%
TCAGAGATATGAAGATCATG+TGG + chr3_2:33159102-33159121 None:intergenic 35.0%
AGTCAAGATTCCATGTTACA+CGG + chr3_2:33159340-33159359 None:intergenic 35.0%
AGATAGCACGTGACAAAATT+GGG - chr3_2:33159391-33159410 Msa0403360:intron 35.0%
GCATTGTGTAAAACAGAGTA+AGG + chr3_2:33159779-33159798 None:intergenic 35.0%
!!! TTTTACACAATGCTGTTTCC+AGG - chr3_2:33159786-33159805 Msa0403360:intron 35.0%
GACCTCTAATATTGATCCAA+CGG - chr3_2:33159922-33159941 Msa0403360:intron 35.0%
CACACATAAATAAGAAGTCG+AGG - chr3_2:33160007-33160026 Msa0403360:intron 35.0%
GACAAAAGTAGCCATTCATA+AGG + chr3_2:33160124-33160143 None:intergenic 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG - chr3_2:33160391-33160410 Msa0403360:intron 35.0%
!! TTTTTCGGATCCTATGTTAG+AGG + chr3_2:33160726-33160745 None:intergenic 35.0%
TCTAACATAGGATCCGAAAA+AGG - chr3_2:33160725-33160744 Msa0403360:intron 35.0%
! ATCAGGTCACAATTTTCAGT+AGG - chr3_2:33160972-33160991 Msa0403360:intron 35.0%
ATGACATACTGTCCATGAAA+TGG + chr3_2:33161115-33161134 None:intergenic 35.0%
TTGAAAACTCCATACTTGGT+TGG - chr3_2:33161322-33161341 Msa0403360:intron 35.0%
ATGTTTATGCCAACCAAGTA+TGG + chr3_2:33161334-33161353 None:intergenic 35.0%
! ATTCCCTAATTTTCGGTTTC+TGG - chr3_2:33161929-33161948 Msa0403360:intron 35.0%
! TTCCCTAATTTTCGGTTTCT+GGG - chr3_2:33161930-33161949 Msa0403360:intron 35.0%
AACCCAGAAACCGAAAATTA+GGG + chr3_2:33161935-33161954 None:intergenic 35.0%
AAACCCAGAAACCGAAAATT+AGG + chr3_2:33161936-33161955 None:intergenic 35.0%
!!! TTGAAACGATCTTTTGGAGT+TGG - chr3_2:33162118-33162137 Msa0403360:intron 35.0%
TGGAAAGGTTTGGAAGAAAA+TGG - chr3_2:33162138-33162157 Msa0403360:intron 35.0%
! GGAATATTGATGGGTATGAT+AGG - chr3_2:33162182-33162201 Msa0403360:CDS 35.0%
TGAGAAGAGGAACAAGATTA+TGG - chr3_2:33162240-33162259 Msa0403360:intron 35.0%
!! GTTTGAGTTGATAATGATGG+AGG - chr3_2:33162281-33162300 Msa0403360:intron 35.0%
! ACAATTTCAAGGACCTTTTC+CGG + chr3_2:33162586-33162605 None:intergenic 35.0%
GAAAAGGTCCTTGAAATTGT+TGG - chr3_2:33162586-33162605 Msa0403360:intron 35.0%
CTAAGTGATTATTGTAGAGG+GGG - chr3_2:33162721-33162740 Msa0403360:CDS 35.0%
TAAGTGATTATTGTAGAGGG+GGG - chr3_2:33162722-33162741 Msa0403360:CDS 35.0%
!! ATTTTTGTTGACTGCAGACT+CGG - chr3_2:33162897-33162916 Msa0403360:CDS 35.0%
GATCAATAGGAAAGACCATA+GGG - chr3_2:33162972-33162991 Msa0403360:CDS 35.0%
!!! AATGAGGCTGATGGATTTTA+TGG - chr3_2:33163003-33163022 Msa0403360:CDS 35.0%
!!! ATGAGGCTGATGGATTTTAT+GGG - chr3_2:33163004-33163023 Msa0403360:CDS 35.0%
TACTAATCCAAGACTTCAGA+TGG + chr3_2:33163084-33163103 None:intergenic 35.0%
AAAAACAAAGTCATGGTAGG+TGG + chr3_2:33163121-33163140 None:intergenic 35.0%
ATGCATTCCAAAGTTAGCTC+TGG + chr3_2:33157819-33157838 None:intergenic 40.0%
TGGTGTTTGCCATTCATTGA+GGG - chr3_2:33157878-33157897 Msa0403360:three_prime_UTR 40.0%
AAGAAATGGGGTGGAGTTAT+TGG - chr3_2:33157942-33157961 Msa0403360:three_prime_UTR 40.0%
CTGCTTATAGGGAATGGAAA+TGG - chr3_2:33157970-33157989 Msa0403360:three_prime_UTR 40.0%
! GTTGCTTCAAAAAAGGGTGT+TGG - chr3_2:33157996-33158015 Msa0403360:three_prime_UTR 40.0%
! GGTGTTGGGAGTCTTAAATA+TGG - chr3_2:33158011-33158030 Msa0403360:three_prime_UTR 40.0%
!! ATGGCAAACAAAGTGGGTTA+TGG - chr3_2:33158030-33158049 Msa0403360:three_prime_UTR 40.0%
!! TCTCTTCTTTGGCCTTTTCA+AGG - chr3_2:33158065-33158084 Msa0403360:three_prime_UTR 40.0%
!! CTCTTCTTTGGCCTTTTCAA+GGG - chr3_2:33158066-33158085 Msa0403360:three_prime_UTR 40.0%
! CTATAACCGTGAGGTATCTA+TGG - chr3_2:33158211-33158230 Msa0403360:three_prime_UTR 40.0%
AGGTATCTATGGAAACCCTT+TGG - chr3_2:33158222-33158241 Msa0403360:three_prime_UTR 40.0%
!! TTGGTGTTGGTGTTGTAGAA+TGG - chr3_2:33158588-33158607 Msa0403360:three_prime_UTR 40.0%
GTGTTGTAGAATGGTCATCT+TGG - chr3_2:33158597-33158616 Msa0403360:three_prime_UTR 40.0%
CAGCATCATAGCAAGATAAC+AGG + chr3_2:33158626-33158645 None:intergenic 40.0%
! TTACCTTGCTAGAAGGGTAT+TGG + chr3_2:33158670-33158689 None:intergenic 40.0%
GATCTTGTTAACCAATGTCC+CGG - chr3_2:33158799-33158818 Msa0403360:intron 40.0%
TAACCAATGTCCCGGAATTA+TGG - chr3_2:33158807-33158826 Msa0403360:intron 40.0%
AACCAATGTCCCGGAATTAT+GGG - chr3_2:33158808-33158827 Msa0403360:intron 40.0%
! TAGAGAGTGTGGAATTCCAT+GGG - chr3_2:33159044-33159063 Msa0403360:intron 40.0%
TCATGTGGAGAGATATCAAC+AGG + chr3_2:33159087-33159106 None:intergenic 40.0%
TGAATCTCTATGTGATTGCC+AGG + chr3_2:33159144-33159163 None:intergenic 40.0%
GCAATCACATAGAGATTCAG+TGG - chr3_2:33159145-33159164 Msa0403360:intron 40.0%
ATCACATAGAGATTCAGTGG+AGG - chr3_2:33159148-33159167 Msa0403360:intron 40.0%
GGAGAAAGGAACAAACCATA+AGG + chr3_2:33159189-33159208 None:intergenic 40.0%
ATTCCATGTTACACGGATCT+GGG + chr3_2:33159333-33159352 None:intergenic 40.0%
! CAATTTTGTCACGTGCTATC+TGG + chr3_2:33159392-33159411 None:intergenic 40.0%
CAGATAGCACGTGACAAAAT+TGG - chr3_2:33159390-33159409 Msa0403360:intron 40.0%
GATAGCACGTGACAAAATTG+GGG - chr3_2:33159392-33159411 Msa0403360:intron 40.0%
CTTCCCTGTAAAACAGAGTA+AGG + chr3_2:33159726-33159745 None:intergenic 40.0%
! CTTACTCTGTTTTACAGGGA+AGG - chr3_2:33159724-33159743 Msa0403360:intron 40.0%
CGTTCAATACACCAAATGGT+GGG + chr3_2:33159753-33159772 None:intergenic 40.0%
GTTGTTGTCCTGTGATTGAA+AGG + chr3_2:33159826-33159845 None:intergenic 40.0%
ACTCACCACTATTATGACAG+CGG + chr3_2:33160209-33160228 None:intergenic 40.0%
AGATTCCACATATGTAGGGA+GGG + chr3_2:33160553-33160572 None:intergenic 40.0%
AAGATTCCACATATGTAGGG+AGG + chr3_2:33160554-33160573 None:intergenic 40.0%
CTGAAAATTGTGACCTGATC+TGG + chr3_2:33160971-33160990 None:intergenic 40.0%
AGTAACGGTGACAAAGTTAG+AGG + chr3_2:33162467-33162486 None:intergenic 40.0%
GAAAGGACGAAAAGCAGTAA+CGG + chr3_2:33162452-33162471 None:intergenic 40.0%
!!! ACGATCTTTTGGAGTTGGAA+AGG - chr3_2:33162123-33162142 Msa0403360:intron 40.0%
!!! CTTTTGGAGTTGGAAAGGTT+TGG - chr3_2:33162128-33162147 Msa0403360:intron 40.0%
GTATGATAGGGAAATTGCAG+TGG - chr3_2:33162195-33162214 Msa0403360:CDS 40.0%
GAAGAGGAACAAGATTATGG+TGG - chr3_2:33162243-33162262 Msa0403360:intron 40.0%
GAAAGGACGAAAAGCAGTAA+CGG - chr3_2:33162452-33162471 Msa0403360:intron 40.0%
AGTAACGGTGACAAAGTTAG+AGG - chr3_2:33162467-33162486 Msa0403360:intron 40.0%
ACGGAGTTATTTAGTGCAGA+TGG - chr3_2:33162826-33162845 Msa0403360:intron 40.0%
CGGAGTTATTTAGTGCAGAT+GGG - chr3_2:33162827-33162846 Msa0403360:intron 40.0%
GGAGTTATTTAGTGCAGATG+GGG - chr3_2:33162828-33162847 Msa0403360:intron 40.0%
GAGTTATTTAGTGCAGATGG+GGG - chr3_2:33162829-33162848 Msa0403360:intron 40.0%
GGATCAATAGGAAAGACCAT+AGG - chr3_2:33162971-33162990 Msa0403360:CDS 40.0%
!!! TGAGGCTGATGGATTTTATG+GGG - chr3_2:33163005-33163024 Msa0403360:CDS 40.0%
TTTCCATTTGGAAACGCATG+TGG - chr3_2:33163058-33163077 Msa0403360:CDS 40.0%
AATGGGTGATAACCACAATG+TGG + chr3_2:33163206-33163225 None:intergenic 40.0%
ACACAAGGATGTCTATGGTG+AGG - chr3_2:33157727-33157746 Msa0403360:three_prime_UTR 45.0%
CTGGTGTTTGCCATTCATTG+AGG - chr3_2:33157877-33157896 Msa0403360:three_prime_UTR 45.0%
CACATCTCTCCCTCAATGAA+TGG + chr3_2:33157890-33157909 None:intergenic 45.0%
CACATGAAGAAGAAATGGGG+TGG - chr3_2:33157933-33157952 Msa0403360:three_prime_UTR 45.0%
GTCAAGCTGCTTATAGGGAA+TGG - chr3_2:33157964-33157983 Msa0403360:three_prime_UTR 45.0%
CTATTGAAACTGGCAGCTTC+TGG - chr3_2:33158174-33158193 Msa0403360:three_prime_UTR 45.0%
TCACGGTTATAGACTTGAGC+AGG + chr3_2:33158203-33158222 None:intergenic 45.0%
TGCTCAAGTCTATAACCGTG+AGG - chr3_2:33158202-33158221 Msa0403360:three_prime_UTR 45.0%
GGGTTTCCATAGATACCTCA+CGG + chr3_2:33158220-33158239 None:intergenic 45.0%
TTGCAGCTAACAGTATGGTG+TGG + chr3_2:33158497-33158516 None:intergenic 45.0%
GAACCAATACCCTTCTAGCA+AGG - chr3_2:33158664-33158683 Msa0403360:three_prime_UTR 45.0%
GCTTCTCTTCTTCCATGTGA+AGG + chr3_2:33159024-33159043 None:intergenic 45.0%
AGAAGAGAAGCTAGAGAGTG+TGG - chr3_2:33159033-33159052 Msa0403360:intron 45.0%
! CTAGAGAGTGTGGAATTCCA+TGG - chr3_2:33159043-33159062 Msa0403360:intron 45.0%
AGTGTGGAATTCCATGGGAA+AGG - chr3_2:33159049-33159068 Msa0403360:intron 45.0%
TGTGGAGAGATATCAACAGG+AGG + chr3_2:33159084-33159103 None:intergenic 45.0%
TTCCATGTTACACGGATCTG+GGG + chr3_2:33159332-33159351 None:intergenic 45.0%
GATTCCATGTTACACGGATC+TGG + chr3_2:33159334-33159353 None:intergenic 45.0%
! TTTTGTCACGTGCTATCTGG+AGG + chr3_2:33159389-33159408 None:intergenic 45.0%
TGTAAAACAGAGTAAGGCCC+CGG + chr3_2:33159720-33159739 None:intergenic 45.0%
! GGGCCTTACTCTGTTTTACA+GGG - chr3_2:33159720-33159739 Msa0403360:intron 45.0%
GCGTTCAATACACCAAATGG+TGG + chr3_2:33159754-33159773 None:intergenic 45.0%
GCTGCGTTCAATACACCAAA+TGG + chr3_2:33159757-33159776 None:intergenic 45.0%
TCCTGTGATTGAAAGGTCAC+GGG + chr3_2:33159819-33159838 None:intergenic 45.0%
GTCCTGTGATTGAAAGGTCA+CGG + chr3_2:33159820-33159839 None:intergenic 45.0%
CAACTTTACCAGTTGCGCTA+AGG - chr3_2:33159842-33159861 Msa0403360:intron 45.0%
GGCCGTTGGATCAATATTAG+AGG + chr3_2:33159927-33159946 None:intergenic 45.0%
CAAAGGTTTATAGTGGCCGT+TGG + chr3_2:33159941-33159960 None:intergenic 45.0%
!!! TGAATGGCTACTTTTGTCGC+AGG - chr3_2:33160126-33160145 Msa0403360:intron 45.0%
CATTGCCGCTGTCATAATAG+TGG - chr3_2:33160201-33160220 Msa0403360:intron 45.0%
!! TATGTAGGGAGGGTATTGCA+CGG + chr3_2:33160543-33160562 None:intergenic 45.0%
CAATACCCTCCCTACATATG+TGG - chr3_2:33160545-33160564 Msa0403360:intron 45.0%
CACTGAAGCTCCTCTAACAT+AGG - chr3_2:33160713-33160732 Msa0403360:intron 45.0%
! GTGGTCTTGAAGCCATTTCA+TGG - chr3_2:33161100-33161119 Msa0403360:intron 45.0%
! GAAAGCACGACAGCAATTGA+AGG - chr3_2:33161784-33161803 Msa0403360:intron 45.0%
! ATTATTGTAGAGGGGGGCAT+TGG - chr3_2:33162728-33162747 Msa0403360:CDS 45.0%
GAGTTCAACCATTACACTCC+TGG - chr3_2:33162928-33162947 Msa0403360:CDS 45.0%
! ATCTTGAGCCAGGAGTGTAA+TGG + chr3_2:33162939-33162958 None:intergenic 45.0%
ATTACACTCCTGGCTCAAGA+TGG - chr3_2:33162938-33162957 Msa0403360:CDS 45.0%
GGAGACAGACTAGGATCAAT+AGG - chr3_2:33162959-33162978 Msa0403360:CDS 45.0%
AGGAAAGACCATAGGGAAGA+AGG - chr3_2:33162979-33162998 Msa0403360:CDS 45.0%
CCTCATTTCCTTCTTCCCTA+TGG + chr3_2:33162990-33163009 None:intergenic 45.0%
CCATAGGGAAGAAGGAAATG+AGG - chr3_2:33162987-33163006 Msa0403360:CDS 45.0%
GAAGAAGGAAATGAGGCTGA+TGG - chr3_2:33162994-33163013 Msa0403360:CDS 45.0%
!!! GAGGCTGATGGATTTTATGG+GGG - chr3_2:33163006-33163025 Msa0403360:CDS 45.0%
!! ATTTATATAAATATATATAG+AGG - chr3_2:33160669-33160688 Msa0403360:intron 5.0%
!! ATAGTTTATATAAATATTAT+TGG + chr3_2:33160757-33160776 None:intergenic 5.0%
!!! ATATTTATAATTTTTTTTAG+TGG + chr3_2:33161041-33161060 None:intergenic 5.0%
GGACTTGCCAGAGCTAACTT+TGG - chr3_2:33157809-33157828 Msa0403360:three_prime_UTR 50.0%
AGCCCATAATTCCGGGACAT+TGG + chr3_2:33158813-33158832 None:intergenic 50.0%
TTCCCCAGATCCGTGTAACA+TGG - chr3_2:33159327-33159346 Msa0403360:intron 50.0%
! GGGGCCTTACTCTGTTTTAC+AGG - chr3_2:33159719-33159738 Msa0403360:intron 50.0%
ACCCGTGACCTTTCAATCAC+AGG - chr3_2:33159815-33159834 Msa0403360:intron 50.0%
!!! TGGCTACTTTTGTCGCAGGT+TGG - chr3_2:33160130-33160149 Msa0403360:intron 50.0%
!! CTACTTTTGTCGCAGGTTGG+TGG - chr3_2:33160133-33160152 Msa0403360:intron 50.0%
!! TTTGTCGCAGGTTGGTGGTA+TGG - chr3_2:33160138-33160157 Msa0403360:intron 50.0%
!! AGGTTGGTGGTATGGTGTTG+TGG - chr3_2:33160146-33160165 Msa0403360:intron 50.0%
!! GGTTGGTGGTATGGTGTTGT+GGG - chr3_2:33160147-33160166 Msa0403360:intron 50.0%
!! GTATGGTGTTGTGGGTCACT+TGG - chr3_2:33160155-33160174 Msa0403360:intron 50.0%
!! ATGTAGGGAGGGTATTGCAC+GGG + chr3_2:33160542-33160561 None:intergenic 50.0%
CAACAGCAACACGACAGCAA+TGG - chr3_2:33161872-33161891 Msa0403360:intron 50.0%
GCTCAAGATGGAGACAGACT+AGG - chr3_2:33162950-33162969 Msa0403360:CDS 50.0%
TGGCCACATGCGTTTCCAAA+TGG + chr3_2:33163064-33163083 None:intergenic 50.0%
! CATGTGGCCATCTGAAGTCT+TGG - chr3_2:33163074-33163093 Msa0403360:intron 50.0%
! GGTGCTCTTAGCCTTTCCCA+TGG + chr3_2:33159063-33159082 None:intergenic 55.0%
ACCTGTTGCACTAGAGCTCC+CGG - chr3_2:33159683-33159702 Msa0403360:intron 55.0%
AGGGAAGGAGTCCCACCATT+TGG - chr3_2:33159739-33159758 Msa0403360:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr3_2:33159807-33159826 None:intergenic 55.0%
GAGGGTAACCTTAGCGCAAC+TGG + chr3_2:33159853-33159872 None:intergenic 55.0%
GTCTGTCTCCATCTTGAGCC+AGG + chr3_2:33162949-33162968 None:intergenic 55.0%
! TCCGGGAGCTCTAGTGCAAC+AGG + chr3_2:33159687-33159706 None:intergenic 60.0%
GCTCCCGGATATGCAGTGTC+CGG - chr3_2:33159698-33159717 Msa0403360:intron 60.0%
CTCCCGGATATGCAGTGTCC+GGG - chr3_2:33159699-33159718 Msa0403360:intron 60.0%
TCCCGGATATGCAGTGTCCG+GGG - chr3_2:33159700-33159719 Msa0403360:intron 60.0%
GCCCCGGACACTGCATATCC+GGG + chr3_2:33159704-33159723 None:intergenic 65.0%
GGCCCCGGACACTGCATATC+CGG + chr3_2:33159705-33159724 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 33157540 33163303 33157540 ID=Msa0403360;Name=Msa0403360
chr3_2 mRNA 33157540 33163303 33157540 ID=Msa0403360-mRNA-1;Parent=Msa0403360;Name=Msa0403360-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0.33|1|0.2|0.33|6|1194|292
chr3_2 exon 33157540 33158765 33157540 ID=Msa0403360-mRNA-1:exon:6564;Parent=Msa0403360-mRNA-1
chr3_2 exon 33161651 33161772 33161651 ID=Msa0403360-mRNA-1:exon:6563;Parent=Msa0403360-mRNA-1
chr3_2 exon 33162158 33162237 33162158 ID=Msa0403360-mRNA-1:exon:6562;Parent=Msa0403360-mRNA-1
chr3_2 exon 33162635 33162832 33162635 ID=Msa0403360-mRNA-1:exon:6561;Parent=Msa0403360-mRNA-1
chr3_2 exon 33162848 33163090 33162848 ID=Msa0403360-mRNA-1:exon:6560;Parent=Msa0403360-mRNA-1
chr3_2 exon 33163100 33163303 33163100 ID=Msa0403360-mRNA-1:exon:6559;Parent=Msa0403360-mRNA-1
chr3_2 CDS 33163100 33163303 33163100 ID=Msa0403360-mRNA-1:cds;Parent=Msa0403360-mRNA-1
chr3_2 CDS 33162848 33163090 33162848 ID=Msa0403360-mRNA-1:cds;Parent=Msa0403360-mRNA-1
chr3_2 CDS 33162635 33162832 33162635 ID=Msa0403360-mRNA-1:cds;Parent=Msa0403360-mRNA-1
chr3_2 CDS 33162158 33162237 33162158 ID=Msa0403360-mRNA-1:cds;Parent=Msa0403360-mRNA-1
chr3_2 CDS 33161651 33161772 33161651 ID=Msa0403360-mRNA-1:cds;Parent=Msa0403360-mRNA-1
chr3_2 CDS 33158734 33158765 33158734 ID=Msa0403360-mRNA-1:cds;Parent=Msa0403360-mRNA-1
chr3_2 three_prime_UTR 33157540 33158733 33157540 ID=Msa0403360-mRNA-1:three_prime_utr;Parent=Msa0403360-mRNA-1
Gene Sequence

>Msa0403360

ATGTTACTTTACTTCATAATTACTTGCATCTCTTTTTTCTTCTTTTTAAACTTAAACTCTCTTTCTTTTCTAAAATCATTCCCATCATGGACAAATGAAAATGAAATGAAGCACCAAGTGTTGTCTTTGAAAACATTCTCCAAGTTGTTTAAGAATCACCTTTGGATTGGTTTACTTTGTCAAATTCACACAAGGATGTCTATGAGTCTTAGTTCAAGAGTTGATCATGTTGAAGAGATTGAGGAGAAGTTATCATTGTTGGACTTGCCAGAGCTAACTTTGGAATGCATACTTGAAAAGTTACCTCCTTCTTCACTTTTTCAAATGGCTGGTGTTTGCCATTCATTGAGGGAGAGATGTGTGAGTGATTACTTTTGGGAGAGACACATGAAGAAGAAATGGGGTGGAGTTATTGGTCAAGCTGCTTATAGGGAATGGAAATGGCATGGTGTTGGGAGTCTTAAATATGGCAAACAAAGTGGGTTATGGATGAAAATTTTCTCTCTTCTTTGGCCTTTTCAAGGGATGAAATTAATGGTTGGTGATGGAAATGATAGCTGCAATCATAGGAATTCATTGCCTGTTGATTCTGTTATGAATTGGTATCTTGCTATTGAAACTGGCAGCTTCTGGTTTCCTGCTCAAAATGGTCATCTTGGTTTCCTGTTATCTTGCTATGATGCTGAACTTAGCTATGATTCGCGAACCAATACCCTTCTAGCAAGGCTAAGAGCACCTCCTGTTGATATCTCTCCACATGATCTTCATATCTCTGATTGTTTAAATGATTTGCATCCTGGCAATCACATAGAGATTCAGTGGAGGAGAAAAAAAGAATTTCCTTATGCAAATGGAGAACGAGAACAAATTGAGAATTAA
Protein sequence

>Msa0403360

MLLYFIITCISFFFFLNLNSLSFLKSFPSWTNENEMKHQVLSLKTFSKLFKNHLWIGLLCQIHTRMSMSLSSRVDHVEEIEEKLSLLDLPELTLECILEKLPPSSLFQMAGVCHSLRERCVSDYFWERHMKKKWGGVIGQAAYREWKWHGVGSLKYGKQSGLWMKIFSLLWPFQGMKLMVGDGNDSCNHRNSLPVDSVMNWYLAIETGSFWFPAQNGHLGFLLSCYDAELSYDSRTNTLLARLRAPPVDISPHDLHISDCLNDLHPGNHIEIQWRRKKEFPYANGEREQIEN*