AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1451600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1451600 MtrunA17_Chr3g0094081 90.000 80 8 0 1 80 11 90 3.32e-42 145
Msa1451600 MtrunA17_Chr3g0094081 80.000 80 11 1 72 146 151 230 5.10e-38 134
Msa1451600 MtrunA17_Chr5g0441461 54.545 77 30 1 75 146 177 253 1.19e-19 85.1
Msa1451600 MtrunA17_Chr5g0441461 53.659 82 26 2 3 80 39 112 2.97e-17 78.6
Msa1451600 MtrunA17_Chr7g0256121 64.286 56 15 1 96 146 195 250 1.46e-16 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1451600 AT2G26850.2 46.154 91 43 2 77 162 151 240 1.05e-20 87.4
Msa1451600 AT2G26850.1 46.154 91 43 2 77 162 151 240 5.00e-20 86.3
Msa1451600 AT2G32560.2 61.667 60 18 1 92 146 167 226 4.42e-18 80.5
Msa1451600 AT2G32560.1 61.667 60 18 1 92 146 167 226 5.43e-18 80.9
Msa1451600 AT2G41170.3 51.471 68 24 2 88 146 161 228 5.77e-17 77.0
Msa1451600 AT2G41170.1 51.471 68 24 2 88 146 161 228 8.16e-17 77.4
Msa1451600 AT2G41170.2 51.471 68 24 2 88 146 161 228 9.49e-17 77.4

Find 85 sgRNAs with CRISPR-Local

Find 443 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCCGGTATTTATTTATT+TGG 0.180967 tig0033496:-31234 Msa1451600:intergenic
AAGGGAATTATCATATATTT+AGG 0.232676 tig0033496:+31827 Msa1451600:three_prime_UTR
TGGTCCTCTAACTATTTAAT+TGG 0.266222 tig0033496:-31197 Msa1451600:intergenic
CTATTGAAACTGGCAGCTTC+TGG 0.273408 tig0033496:+25666 Msa1451600:CDS
TGAATGTTGAAACGATCTTT+TGG 0.280132 tig0033496:+30779 Msa1451600:CDS
TGGAAAGGTTTGGAAGAAAA+TGG 0.281968 tig0033496:+30805 Msa1451600:CDS
TGAGAAGCAATTTACATTGA+TGG 0.293260 tig0033496:-31926 Msa1451600:intergenic
GGAATATTGATGGGTATGAT+AGG 0.312388 tig0033496:+30849 Msa1451600:exon
AGAAAATTTACCTTGCTAGA+AGG 0.316417 tig0033496:-26167 Msa1451600:intergenic
TGTGGAAAAGAATATCAAAT+TGG 0.349001 tig0033496:-31850 Msa1451600:intergenic
TGAGAAGAGGAACAAGATTA+TGG 0.361100 tig0033496:+30907 Msa1451600:three_prime_UTR
AAGAGTAAGCCAAATGAAAA+AGG 0.362563 tig0033496:+30828 Msa1451600:CDS
TGGTATCTTGCTATTGAAAC+TGG 0.365562 tig0033496:+25656 Msa1451600:CDS
TTACCTTGCTAGAAGGGTAT+TGG 0.378676 tig0033496:-26160 Msa1451600:intergenic
TATACAGTCCAACAATTTCA+AGG 0.385642 tig0033496:-31260 Msa1451600:intergenic
ATGAGAATGAAATTTCCATT+TGG 0.398780 tig0033496:+31711 Msa1451600:three_prime_UTR
TGAGGAGAAGTTATCATTGT+TGG 0.399408 tig0033496:+25280 Msa1451600:CDS
GGAGACAGACTAGGATCAAT+AGG 0.403977 tig0033496:+31624 Msa1451600:three_prime_UTR
CTATTTAATTGGTATCGGTT+TGG 0.409887 tig0033496:-31186 Msa1451600:intergenic
CAGCATCATAGCAAGATAAC+AGG 0.411746 tig0033496:-26116 Msa1451600:intergenic
ACAATTTCAAGGACCTCTTC+CGG 0.422925 tig0033496:-31249 Msa1451600:intergenic
GATACCAATTAAATAGTTAG+AGG 0.424501 tig0033496:+31193 Msa1451600:three_prime_UTR
CCTCATTTCCTTCTTCCCTA+TGG 0.427469 tig0033496:-31652 Msa1451600:intergenic
AAATAGTTAGAGGACCAAAA+AGG 0.431203 tig0033496:+31203 Msa1451600:three_prime_UTR
ATTGCATCAAATTTAAATCA+AGG 0.432108 tig0033496:+31321 Msa1451600:three_prime_UTR
AATTCACACAAGGATGTCTA+TGG 0.439355 tig0033496:+25214 Msa1451600:CDS
AGTTGTTTAAGAATCACCTT+TGG 0.440891 tig0033496:+25174 Msa1451600:CDS
TAGGTTTGAGTTGATAATGA+TGG 0.443366 tig0033496:+30945 Msa1451600:three_prime_UTR
TGATCATGTTGAAGAGATTG+AGG 0.446335 tig0033496:+25262 Msa1451600:CDS
CTGTTGATTCTGTTATGAAT+TGG 0.447633 tig0033496:+25636 Msa1451600:CDS
GAAGAGGTCCTTGAAATTGT+TGG 0.450369 tig0033496:+31252 Msa1451600:three_prime_UTR
CAAGAATATATACAACTTGA+AGG 0.453779 tig0033496:+31808 Msa1451600:three_prime_UTR
GTCTGTCTCCATCTTGAGCC+AGG 0.453925 tig0033496:-31611 Msa1451600:intergenic
GAAAATTTACCTTGCTAGAA+GGG 0.455807 tig0033496:-26166 Msa1451600:intergenic
TCTAACTATTTAATTGGTAT+CGG 0.457559 tig0033496:-31191 Msa1451600:intergenic
GAAATGATAGCTGCAATCAT+AGG 0.468430 tig0033496:+25603 Msa1451600:CDS
ACGGAGTTATTTAGTGCAGA+TGG 0.468790 tig0033496:+31491 Msa1451600:three_prime_UTR
AGGAAATACCATAGGGAAGA+AGG 0.471979 tig0033496:+31644 Msa1451600:three_prime_UTR
TTTGTTTATAATATCAGAGA+TGG 0.473229 tig0033496:+31357 Msa1451600:three_prime_UTR
TTTAAGAATCACCTTTGGAT+TGG 0.474459 tig0033496:+25179 Msa1451600:CDS
GTGTTGTAGAATGGTCATCT+TGG 0.481169 tig0033496:+26090 Msa1451600:intron
TGGCCACATGCGTTTCCAAA+TGG 0.484507 tig0033496:-31726 Msa1451600:intergenic
CGGAGTTATTTAGTGCAGAT+GGG 0.486119 tig0033496:+31492 Msa1451600:three_prime_UTR
GGACTTGCCAGAGCTAACTT+TGG 0.486829 tig0033496:+25301 Msa1451600:CDS
CATGTGGCCATCTGAAGTCT+TGG 0.498956 tig0033496:+31739 Msa1451600:three_prime_UTR
AGTAACGGTGACAAAGTTAG+AGG 0.499028 tig0033496:+31133 Msa1451600:three_prime_UTR
CAAGGGATGAAATTAATGGT+TGG 0.513850 tig0033496:+25575 Msa1451600:intron
AAACTAAGTGATTATTGTAG+AGG 0.520541 tig0033496:+31384 Msa1451600:three_prime_UTR
GGATCAATAGGAAATACCAT+AGG 0.523417 tig0033496:+31636 Msa1451600:three_prime_UTR
AAATAAATAAATACCGGAAG+AGG 0.528835 tig0033496:+31236 Msa1451600:three_prime_UTR
AAGGTGATTCTTAAACAACT+TGG 0.529166 tig0033496:-25171 Msa1451600:intergenic
AACTAAGTGATTATTGTAGA+GGG 0.535698 tig0033496:+31385 Msa1451600:three_prime_UTR
CAATTCATAACAGAATCAAC+AGG 0.536613 tig0033496:-25635 Msa1451600:intergenic
ATGCATTCCAAAGTTAGCTC+TGG 0.537840 tig0033496:-25308 Msa1451600:intergenic
GAATATTGATGGGTATGATA+GGG 0.538460 tig0033496:+30850 Msa1451600:exon
TTAGCCAAATAAATAAATAC+CGG 0.540168 tig0033496:+31230 Msa1451600:three_prime_UTR
GTTTGAGTTGATAATGATGG+AGG 0.551351 tig0033496:+30948 Msa1451600:three_prime_UTR
TACTAATCCAAGACTTCAGA+TGG 0.551802 tig0033496:-31746 Msa1451600:intergenic
TCACGGTTATAGACTTGAGC+AGG 0.560717 tig0033496:-25692 Msa1451600:intergenic
ACTAATTTAGAATTGAGAAG+AGG 0.563122 tig0033496:+30894 Msa1451600:three_prime_UTR
ATTACACTCCTGGCTCAAGA+TGG 0.564696 tig0033496:+31603 Msa1451600:three_prime_UTR
GAGTTCAACCATTACACTCC+TGG 0.567077 tig0033496:+31593 Msa1451600:three_prime_UTR
TTGGATAACAACAAATCAGA+AGG 0.569451 tig0033496:+31412 Msa1451600:three_prime_UTR
GATCAATAGGAAATACCATA+GGG 0.570468 tig0033496:+31637 Msa1451600:three_prime_UTR
ACTAAGTGATTATTGTAGAG+GGG 0.572868 tig0033496:+31386 Msa1451600:three_prime_UTR
CCATAGGGAAGAAGGAAATG+AGG 0.573165 tig0033496:+31652 Msa1451600:three_prime_UTR
AAGAATATATACAACTTGAA+GGG 0.575309 tig0033496:+31809 Msa1451600:three_prime_UTR
ATCTTGAGCCAGGAGTGTAA+TGG 0.578616 tig0033496:-31601 Msa1451600:intergenic
GAAGAAGGAAATGAGGCTGA+TGG 0.579595 tig0033496:+31659 Msa1451600:three_prime_UTR
ATGAAATTAATGGTTGGTGA+TGG 0.589442 tig0033496:+25581 Msa1451600:CDS
TTTCCATTTGGAAACGCATG+TGG 0.589957 tig0033496:+31723 Msa1451600:three_prime_UTR
GGAGTTATTTAGTGCAGATG+GGG 0.590114 tig0033496:+31493 Msa1451600:three_prime_UTR
TACTTTGTCAAATTCACACA+AGG 0.593265 tig0033496:+25204 Msa1451600:CDS
CTAAGTGATTATTGTAGAGG+GGG 0.596011 tig0033496:+31387 Msa1451600:three_prime_UTR
GCTCAAGATGGAGACAGACT+AGG 0.596676 tig0033496:+31615 Msa1451600:three_prime_UTR
GAAGAGGAACAAGATTATGG+TGG 0.604516 tig0033496:+30910 Msa1451600:three_prime_UTR
GACAAAGTAAACCAATCCAA+AGG 0.614893 tig0033496:-25190 Msa1451600:intergenic
ATTTGAATAAATCTGACGAA+AGG 0.622881 tig0033496:+31101 Msa1451600:three_prime_UTR
GAACCAATACCCTTCTAGCA+AGG 0.643683 tig0033496:+26157 Msa1451600:CDS
GAGTTATTTAGTGCAGATGG+GGG 0.648090 tig0033496:+31494 Msa1451600:three_prime_UTR
ACACAAGGATGTCTATGGTG+AGG 0.658567 tig0033496:+25219 Msa1451600:CDS
GTATGATAGGGAAATTGCAG+TGG 0.662662 tig0033496:+30862 Msa1451600:three_prime_UTR
TGGATAACAACAAATCAGAA+GGG 0.662974 tig0033496:+31413 Msa1451600:three_prime_UTR
GAAAGGACGAAAAGCAGTAA+CGG 0.668751 tig0033496:+31118 Msa1451600:three_prime_UTR
AATGGGTGATAACCACAATG+TGG 0.685695 tig0033496:-31868 Msa1451590:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATTTCAACATTTTTAT+CGG + tig0033496:27579-27598 Msa1451600:intron 10.0%
!! ATTATAAATATATCAAAATG+TGG + tig0033496:28574-28593 Msa1451600:intron 10.0%
!!! TTTTAAGAATGAAATTTAAA+AGG + tig0033496:28876-28895 Msa1451600:intron 10.0%
!! TTTAAGAATGAAATTTAAAA+GGG + tig0033496:28877-28896 Msa1451600:intron 10.0%
!! ATTATAAATATATCAAAATG+TGG + tig0033496:28574-28593 Msa1451600:intron 10.0%
!!! TTTTAAGAATGAAATTTAAA+AGG + tig0033496:28876-28895 Msa1451600:intron 10.0%
!! TTTAAGAATGAAATTTAAAA+GGG + tig0033496:28877-28896 Msa1451600:intron 10.0%
!!! ATGAAAATTTTGAAATAAAT+AGG + tig0033496:28995-29014 Msa1451600:intron 10.0%
!!! AACTAAAAATTGATTTATTT+CGG + tig0033496:30224-30243 Msa1451600:intron 10.0%
!!! AGTTTTATTAAAAAAACATT+AGG + tig0033496:30290-30309 Msa1451600:intron 10.0%
!!! GTTTTATTAAAAAAACATTA+GGG + tig0033496:30291-30310 Msa1451600:intron 10.0%
!!! AACTAAAAATTGATTTATTT+CGG - tig0033496:30224-30243 Msa1451600:intergenic 10.0%
!!! AATTTTCATAACAAATTAGA+TGG - tig0033496:25912-25931 Msa1451600:intergenic 15.0%
!!! TTATTTTCAATGGAATTTAA+TGG + tig0033496:26026-26045 Msa1451600:intron 15.0%
!! GAATCTATTATGTATTAAAT+TGG + tig0033496:26231-26250 Msa1451600:intron 15.0%
!!! CAAGACAAAATTTTTATTTA+TGG - tig0033496:26336-26355 Msa1451600:intergenic 15.0%
!! TAGTTAATAGAATTAATACA+TGG - tig0033496:26722-26741 Msa1451600:intergenic 15.0%
!!! AATTATGAGAAATGATATTT+TGG + tig0033496:27109-27128 Msa1451600:intron 15.0%
!!! TATTTTATTAACCTTATGAA+TGG + tig0033496:27631-27650 Msa1451600:intron 15.0%
!! AAAGATAATACTAAAAATGA+CGG + tig0033496:28122-28141 Msa1451600:intron 15.0%
!! TCTAAATATATATCAAAATG+TGG + tig0033496:28538-28557 Msa1451600:intron 15.0%
!! GGAACAATTATAAAATTTAA+TGG - tig0033496:28724-28743 Msa1451600:intergenic 15.0%
!! AAAGATAATACTAAAAATGA+CGG + tig0033496:28122-28141 Msa1451600:intron 15.0%
!! TCTAAATATATATCAAAATG+TGG + tig0033496:28538-28557 Msa1451600:intron 15.0%
!! GGAACAATTATAAAATTTAA+TGG - tig0033496:28724-28743 Msa1451600:intergenic 15.0%
!!! ATAAATCAATTTTTAGTTAG+AGG - tig0033496:31162-31181 Msa1451600:intergenic 15.0%
!!! TGTTTTTTTAATAAAACTGA+CGG - tig0033496:30288-30307 Msa1451600:intergenic 15.0%
!!! ATTTATGTTGTTTGTTTTTT+TGG + tig0033496:30979-30998 Msa1451600:three_prime_UTR 15.0%
!!! GATTTATTCAAATTTTGTTA+GGG - tig0033496:31094-31113 Msa1451600:intergenic 15.0%
!!! AGATTTATTCAAATTTTGTT+AGG - tig0033496:31095-31114 Msa1451600:intergenic 15.0%
!!! ATAAATCAATTTTTAGTTAG+AGG + tig0033496:31162-31181 Msa1451600:three_prime_UTR 15.0%
!! ATTAATGTAGTTCAAATAAG+TGG + tig0033496:25792-25811 Msa1451600:intron 20.0%
!!! ATCAATTGCTTTATTTTCAA+TGG + tig0033496:26016-26035 Msa1451600:intron 20.0%
!!! TGGTAAGATTTTATCAAAAA+TGG - tig0033496:26398-26417 Msa1451600:intergenic 20.0%
!! ATTGGTTAAACAACTTAAAA+TGG - tig0033496:26418-26437 Msa1451600:intergenic 20.0%
!!! ATTAAATGATTGCTTGTTAT+AGG + tig0033496:26488-26507 Msa1451600:intron 20.0%
!! AGAAAAAAAGAATTTCCTTA+TGG + tig0033496:26664-26683 Msa1451600:intron 20.0%
!! TACATGGAATTAAAAAATGA+TGG - tig0033496:26706-26725 Msa1451600:intergenic 20.0%
!!! TTTTTATTGGTCAAAAACAA+TGG - tig0033496:27027-27046 Msa1451600:intergenic 20.0%
!!! TTGTTTTTCTCTCTTTTTAT+TGG - tig0033496:27040-27059 Msa1451600:intergenic 20.0%
!! AATAAAAAGAGAGAAAAACA+AGG + tig0033496:27039-27058 Msa1451600:intron 20.0%
!! ATAAAAAGAGAGAAAAACAA+GGG + tig0033496:27040-27059 Msa1451600:intron 20.0%
!! GTCACAATAATCTTAAAAAA+AGG + tig0033496:27151-27170 Msa1451600:intron 20.0%
!! CTATCTAAAAAAACTATCTA+AGG - tig0033496:27479-27498 Msa1451600:intergenic 20.0%
!!! TTCTTATTGGTTAAAAACAA+TGG + tig0033496:27833-27852 Msa1451600:intron 20.0%
!! ATAAATACCAATCATACAAA+AGG - tig0033496:27960-27979 Msa1451600:intergenic 20.0%
!! TGAAACTATTCAACTAAAAT+GGG - tig0033496:28031-28050 Msa1451600:intergenic 20.0%
!! ATGAAACTATTCAACTAAAA+TGG - tig0033496:28032-28051 Msa1451600:intergenic 20.0%
!! TATATATAGAGGTTATAAAG+AGG + tig0033496:28204-28223 Msa1451600:intron 20.0%
!! TGTTTATAAAGATACCATAT+TGG + tig0033496:28300-28319 Msa1451600:intron 20.0%
!! TAATCAACCATTATCATATT+GGG + tig0033496:28420-28439 Msa1451600:intron 20.0%
!! AAATAGCATAATAAGTTAAG+TGG - tig0033496:28601-28620 Msa1451600:intergenic 20.0%
!! ACATGTATTTATATGTTTCA+CGG - tig0033496:28794-28813 Msa1451600:intergenic 20.0%
!!! AAATAGCTAAATTACCTTTT+TGG + tig0033496:29011-29030 Msa1451600:intron 20.0%
!! AACTTTCATTAAATAGTTAG+AGG - tig0033496:29038-29057 Msa1451600:intergenic 20.0%
!! ATAAATACCAATCATACAAA+AGG - tig0033496:27960-27979 Msa1451600:intergenic 20.0%
!! TGAAACTATTCAACTAAAAT+GGG - tig0033496:28031-28050 Msa1451600:intergenic 20.0%
!! ATGAAACTATTCAACTAAAA+TGG - tig0033496:28032-28051 Msa1451600:intergenic 20.0%
!! TATATATAGAGGTTATAAAG+AGG + tig0033496:28204-28223 Msa1451600:intron 20.0%
!! TGTTTATAAAGATACCATAT+TGG + tig0033496:28300-28319 Msa1451600:intron 20.0%
!! TAATCAACCATTATCATATT+GGG + tig0033496:28420-28439 Msa1451600:intron 20.0%
!! ACATGTATTTATATGTTTCA+CGG - tig0033496:28794-28813 Msa1451600:intergenic 20.0%
!! TCTAACTATTTAATTGGTAT+CGG + tig0033496:30190-30209 Msa1451600:intron 20.0%
!! AAAATTGAATGATACAAATC+TGG + tig0033496:30378-30397 Msa1451600:intron 20.0%
!!! TTGTTTTTTTTCTTTGTTGT+TGG + tig0033496:30404-30423 Msa1451600:intron 20.0%
!!! TGTTTTTTTTCTTTGTTGTT+GGG + tig0033496:30405-30424 Msa1451600:intron 20.0%
!!! AATCTTAAATCCCTAATTTT+CGG + tig0033496:30481-30500 Msa1451600:intron 20.0%
!!! AATCTTTATTCCCTAATTTT+CGG + tig0033496:30589-30608 Msa1451600:intron 20.0%
!!! ATCAATATTCCTTTTTCATT+TGG - tig0033496:30840-30859 Msa1451600:intergenic 20.0%
!! AAATGAAAAAGGAATATTGA+TGG + tig0033496:30839-30858 Msa1451600:CDS 20.0%
!! AATGAAAAAGGAATATTGAT+GGG + tig0033496:30840-30859 Msa1451600:exon 20.0%
!!! TGTTTTTTTGGTTATTTTTC+TGG + tig0033496:30991-31010 Msa1451600:three_prime_UTR 20.0%
!! TCTAACTATTTAATTGGTAT+CGG - tig0033496:30190-30209 Msa1451600:intergenic 20.0%
!! TTAGCCAAATAAATAAATAC+CGG + tig0033496:31230-31249 Msa1451600:three_prime_UTR 20.0%
!! ATTGCATCAAATTTAAATCA+AGG + tig0033496:31321-31340 Msa1451600:three_prime_UTR 20.0%
!! TTTGTTTATAATATCAGAGA+TGG + tig0033496:31357-31376 Msa1451600:three_prime_UTR 20.0%
!! AATATAACGTAAAAAGTAGT+GGG - tig0033496:31527-31546 Msa1451600:intergenic 20.0%
!! AAATATAACGTAAAAAGTAG+TGG - tig0033496:31528-31547 Msa1451600:intergenic 20.0%
!!! CTTTTTACGTTATATTTGTT+AGG + tig0033496:31531-31550 Msa1451600:three_prime_UTR 20.0%
!! AAGAATATATACAACTTGAA+GGG + tig0033496:31809-31828 Msa1451600:three_prime_UTR 20.0%
!! AAGGGAATTATCATATATTT+AGG + tig0033496:31827-31846 Msa1451600:three_prime_UTR 20.0%
!! TAAACTTTGTCTAGAAAAAT+GGG - tig0033496:31888-31907 Msa1451600:intergenic 20.0%
!! ATAAACTTTGTCTAGAAAAA+TGG - tig0033496:31889-31908 Msa1451600:intergenic 20.0%
! TTAAATATGGCAAACAAAGT+GGG + tig0033496:25516-25535 Msa1451600:intron 25.0%
!! TGAAAATTTTCTCTCTTCTT+TGG + tig0033496:25546-25565 Msa1451600:intron 25.0%
! ATTAATTTCATCCCTTGAAA+AGG - tig0033496:25572-25591 Msa1451600:intergenic 25.0%
!!! TTTTCAAGGGATGAAATTAA+TGG + tig0033496:25571-25590 Msa1451600:intron 25.0%
! GTTAATACAGTTCAAATATG+TGG - tig0033496:25890-25909 Msa1451600:intergenic 25.0%
!! TTTCTCACATGTTACAATTT+TGG + tig0033496:26056-26075 Msa1451600:intron 25.0%
!!! AAAGAATGTTCTAAGAACAT+TGG - tig0033496:26436-26455 Msa1451600:intergenic 25.0%
! ATGGAATTAAAAAATGATGG+TGG - tig0033496:26703-26722 Msa1451600:intergenic 25.0%
!! CTTTTCTTTTCTTAAGATAG+AGG - tig0033496:26747-26766 Msa1451600:intergenic 25.0%
! TAAAGATTATTGTGACTTGA+GGG - tig0033496:27392-27411 Msa1451600:intergenic 25.0%
! TTAAAGATTATTGTGACTTG+AGG - tig0033496:27393-27412 Msa1451600:intergenic 25.0%
!! AAACTATCTAAGGTTTATAG+TGG - tig0033496:27469-27488 Msa1451600:intergenic 25.0%
! GTCAAAATATCAATACTCAA+AGG - tig0033496:27770-27789 Msa1451600:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG + tig0033496:27820-27839 Msa1451600:intron 25.0%
!!! AACCACTTTTTGATAACTTT+TGG - tig0033496:27915-27934 Msa1451600:intergenic 25.0%
! GAAACTATTCAACTAAAATG+GGG - tig0033496:28030-28049 Msa1451600:intergenic 25.0%
! TAAAAGATTCCACATATGTA+GGG - tig0033496:28076-28095 Msa1451600:intergenic 25.0%
!! TACATATGTGGAATCTTTTA+GGG + tig0033496:28076-28095 Msa1451600:intron 25.0%
!!! TTATTGGTTTGATCCTTTTT+CGG - tig0033496:28265-28284 Msa1451600:intergenic 25.0%
! TTTCTATCATCAAAATTCCT+AGG - tig0033496:28346-28365 Msa1451600:intergenic 25.0%
!!! AGGAATTTTGATGATAGAAA+TGG + tig0033496:28346-28365 Msa1451600:intron 25.0%
!!! TAGAAATGGACTGAAAATTA+TGG + tig0033496:28360-28379 Msa1451600:intron 25.0%
! GTAATCAACCATTATCATAT+TGG + tig0033496:28419-28438 Msa1451600:intron 25.0%
! AATCAACCATTATCATATTG+GGG + tig0033496:28421-28440 Msa1451600:intron 25.0%
!! AACTTATTATGCTATTTGAG+TGG + tig0033496:28604-28623 Msa1451600:intron 25.0%
!! TTTAATGGATGAACATAGTT+AGG - tig0033496:28709-28728 Msa1451600:intergenic 25.0%
!!! ATTTTTGATTTTGTCAACTG+AGG - tig0033496:28745-28764 Msa1451600:intergenic 25.0%
! ATACATGTGTTCATAAACAT+TGG + tig0033496:28806-28825 Msa1451600:intron 25.0%
! GAAACTATTCAACTAAAATG+GGG - tig0033496:28030-28049 Msa1451600:intergenic 25.0%
! TAAAAGATTCCACATATGTA+GGG - tig0033496:28076-28095 Msa1451600:intergenic 25.0%
!! TACATATGTGGAATCTTTTA+GGG + tig0033496:28076-28095 Msa1451600:intron 25.0%
!!! TTATTGGTTTGATCCTTTTT+CGG - tig0033496:28265-28284 Msa1451600:intergenic 25.0%
! TTTCTATCATCAAAATTCCT+AGG - tig0033496:28346-28365 Msa1451600:intergenic 25.0%
!!! AGGAATTTTGATGATAGAAA+TGG + tig0033496:28346-28365 Msa1451600:intron 25.0%
!!! TAGAAATGGACTGAAAATTA+TGG + tig0033496:28360-28379 Msa1451600:intron 25.0%
! GTAATCAACCATTATCATAT+TGG + tig0033496:28419-28438 Msa1451600:intron 25.0%
! AATCAACCATTATCATATTG+GGG + tig0033496:28421-28440 Msa1451600:intron 25.0%
! AATAGCATAATAAGTCTAAG+TGG - tig0033496:29752-29771 Msa1451600:intergenic 25.0%
!! TTTAATGGATGAACATAGTT+AGG - tig0033496:28709-28728 Msa1451600:intergenic 25.0%
!!! ATTTTTGATTTTGTCAACTG+AGG - tig0033496:28745-28764 Msa1451600:intergenic 25.0%
! TACATGTGTTCATAAAACAT+TGG + tig0033496:29959-29978 Msa1451600:intron 25.0%
!! AATAGGCTAAATTACCTTTT+TGG + tig0033496:30164-30183 Msa1451600:intron 25.0%
! GATACCAATTAAATAGTTAG+AGG - tig0033496:31193-31212 Msa1451600:intergenic 25.0%
!! TTTTAATAAAACTGACGGAA+AGG - tig0033496:30283-30302 Msa1451600:intergenic 25.0%
!! GAAAATTAGGGATTTAAGAT+TGG - tig0033496:30482-30501 Msa1451600:intergenic 25.0%
!!! AATGGATTTCGATTTTGAAA+GGG + tig0033496:30557-30576 Msa1451600:intron 25.0%
!!! TTATACAGTTTTTGGAATAG+TGG + tig0033496:30622-30641 Msa1451600:intron 25.0%
!!! TATACAGTTTTTGGAATAGT+GGG + tig0033496:30623-30642 Msa1451600:intron 25.0%
!!! GTTTCTTGTTTTCGAAATTT+GGG + tig0033496:30646-30665 Msa1451600:intron 25.0%
!!! TTTTGTTTTTATGCAGCAAA+TGG + tig0033496:30729-30748 Msa1451600:intron 25.0%
!! ACTAATTTAGAATTGAGAAG+AGG + tig0033496:30894-30913 Msa1451600:three_prime_UTR 25.0%
! ATTTGAATAAATCTGACGAA+AGG + tig0033496:31101-31120 Msa1451600:three_prime_UTR 25.0%
! GATACCAATTAAATAGTTAG+AGG + tig0033496:31193-31212 Msa1451600:three_prime_UTR 25.0%
!! ATTTGGCTAAATTACCTTTT+TGG - tig0033496:31220-31239 Msa1451600:intergenic 25.0%
! TCTTCCGGTATTTATTTATT+TGG - tig0033496:31237-31256 Msa1451600:intergenic 25.0%
! AAATAAATAAATACCGGAAG+AGG + tig0033496:31236-31255 Msa1451600:three_prime_UTR 25.0%
! AAACTAAGTGATTATTGTAG+AGG + tig0033496:31384-31403 Msa1451600:three_prime_UTR 25.0%
! AACTAAGTGATTATTGTAGA+GGG + tig0033496:31385-31404 Msa1451600:three_prime_UTR 25.0%
!! TTTTTGAATCAACTCAAAGA+CGG + tig0033496:31472-31491 Msa1451600:three_prime_UTR 25.0%
! ATATAACGTAAAAAGTAGTG+GGG - tig0033496:31526-31545 Msa1451600:intergenic 25.0%
! ATGAGAATGAAATTTCCATT+TGG + tig0033496:31711-31730 Msa1451600:three_prime_UTR 25.0%
! TCTTGTAAAAAACAAAGTCA+TGG - tig0033496:31793-31812 Msa1451600:intergenic 25.0%
! CAAGAATATATACAACTTGA+AGG + tig0033496:31808-31827 Msa1451600:three_prime_UTR 25.0%
! TGTGGAAAAGAATATCAAAT+TGG - tig0033496:31853-31872 Msa1451600:intergenic 25.0%
!! AAAGTTTATGTGTACGTTTT+TGG + tig0033496:31900-31919 Msa1451600:three_prime_UTR 25.0%
! ATGTTTTCAAAGACAACACT+TGG - tig0033496:25148-25167 Msa1267380:intergenic 30.0%
AAGGTGATTCTTAAACAACT+TGG - tig0033496:25174-25193 Msa1267380:intergenic 30.0%
AGTTGTTTAAGAATCACCTT+TGG + tig0033496:25174-25193 Msa1451600:CDS 30.0%
TTTAAGAATCACCTTTGGAT+TGG + tig0033496:25179-25198 Msa1451600:CDS 30.0%
TACTTTGTCAAATTCACACA+AGG + tig0033496:25204-25223 Msa1451600:CDS 30.0%
ATTTGAAAAAGTGAAGAAGG+AGG - tig0033496:25347-25366 Msa1451600:intergenic 30.0%
!!! TCCTTCTTCACTTTTTCAAA+TGG + tig0033496:25346-25365 Msa1451600:CDS 30.0%
!! ATGTGTGAGTGATTACTTTT+GGG + tig0033496:25397-25416 Msa1451600:intron 30.0%
CTTAAATATGGCAAACAAAG+TGG + tig0033496:25515-25534 Msa1451600:intron 30.0%
!! ATGAAATTAATGGTTGGTGA+TGG + tig0033496:25581-25600 Msa1451600:CDS 30.0%
CAATTCATAACAGAATCAAC+AGG - tig0033496:25638-25657 Msa1451600:intergenic 30.0%
!! CTGTTGATTCTGTTATGAAT+TGG + tig0033496:25636-25655 Msa1451600:CDS 30.0%
!!! ACCCTTTGGTCATTTTTTTT+AGG + tig0033496:25728-25747 Msa1451600:intron 30.0%
CCCTAAAAAAAATGACCAAA+GGG - tig0033496:25732-25751 Msa1451600:intergenic 30.0%
!!! CCCTTTGGTCATTTTTTTTA+GGG + tig0033496:25729-25748 Msa1451600:intron 30.0%
TCCCTAAAAAAAATGACCAA+AGG - tig0033496:25733-25752 Msa1451600:intergenic 30.0%
!!! GGTCATTTTTTTTAGGGAAA+TGG + tig0033496:25735-25754 Msa1451600:intron 30.0%
GATGGCTAATGAATATAACA+AGG + tig0033496:25831-25850 Msa1451600:intron 30.0%
! AATTTTTGCAGCTAACAGTA+TGG - tig0033496:25994-26013 Msa1451600:intergenic 30.0%
!! ACATGTTACAATTTTGGTGT+TGG + tig0033496:26062-26081 Msa1451600:intron 30.0%
GAAAATTTACCTTGCTAGAA+GGG - tig0033496:26169-26188 Msa1451600:intergenic 30.0%
AGAAAATTTACCTTGCTAGA+AGG - tig0033496:26170-26189 Msa1451600:intergenic 30.0%
ATTTGAGTATCAACCAGATA+AGG + tig0033496:26270-26289 Msa1451600:intron 30.0%
ATTTCTTAGCCTATAATTCC+GGG - tig0033496:26313-26332 Msa1451600:intergenic 30.0%
GATTTCTTAGCCTATAATTC+CGG - tig0033496:26314-26333 Msa1451600:intergenic 30.0%
! TGTTTAAATGATTTGCATCC+TGG + tig0033496:26616-26635 Msa1451600:intron 30.0%
!! TAAAAAATGATGGTGGAGAA+AGG - tig0033496:26696-26715 Msa1451600:intergenic 30.0%
! TCTGACATTTGTGTTATTAG+AGG - tig0033496:26774-26793 Msa1451600:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG - tig0033496:27846-27865 Msa1451600:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG + tig0033496:27065-27084 Msa1451600:intron 30.0%
AACTTGTGTAAAACAGAGTA+AGG - tig0033496:27304-27323 Msa1451600:intergenic 30.0%
! TTTATCGGTTGAATCACTAT+AGG + tig0033496:27594-27613 Msa1451600:intron 30.0%
TCAACAAAGTTGTCATCAAA+TGG - tig0033496:27065-27084 Msa1451600:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG + tig0033496:27846-27865 Msa1451600:intron 30.0%
GTCCAAAAGTTATCAAAAAG+TGG + tig0033496:27910-27929 Msa1451600:intron 30.0%
! CTCATTTCCTTTTGTATGAT+TGG + tig0033496:27950-27969 Msa1451600:intron 30.0%
CTAAAAGATTCCACATATGT+AGG - tig0033496:28077-28096 Msa1451600:intergenic 30.0%
! CTACATATGTGGAATCTTTT+AGG + tig0033496:28075-28094 Msa1451600:intron 30.0%
! ACATATGTGGAATCTTTTAG+GGG + tig0033496:28077-28096 Msa1451600:intron 30.0%
TAATACTAAAAATGACGGTG+AGG + tig0033496:28127-28146 Msa1451600:intron 30.0%
! CTTTCTTTTAGTCACCAATA+TGG - tig0033496:28317-28336 Msa1451600:intergenic 30.0%
CTAAAAGAAAGATATTGCCT+AGG + tig0033496:28326-28345 Msa1451600:intron 30.0%
ATAACTCCCCAATATGATAA+TGG - tig0033496:28430-28449 Msa1451600:intergenic 30.0%
! TTAATTTGAATGACCAGATC+AGG + tig0033496:28479-28498 Msa1451600:intron 30.0%
! ATTTTCGGTAGGTATCTTTA+CGG + tig0033496:28507-28526 Msa1451600:intron 30.0%
AGAAATTATCAATGTGTTGG+TGG - tig0033496:28666-28685 Msa1451600:intergenic 30.0%
GACAGAAATTATCAATGTGT+TGG - tig0033496:28669-28688 Msa1451600:intergenic 30.0%
!!! TGTTTTGAAAACTCCATACT+TGG + tig0033496:28840-28859 Msa1451600:intron 30.0%
AAATAGTTAGAGGACCAAAA+AGG - tig0033496:31203-31222 Msa1451600:intergenic 30.0%
!!! AACCACTTTTTGACAACTTT+TGG - tig0033496:29063-29082 Msa1451600:intergenic 30.0%
! CTCATTTCCTTTTGTATGAT+TGG + tig0033496:27950-27969 Msa1451600:intron 30.0%
CTAAAAGATTCCACATATGT+AGG - tig0033496:28077-28096 Msa1451600:intergenic 30.0%
! CTACATATGTGGAATCTTTT+AGG + tig0033496:28075-28094 Msa1451600:intron 30.0%
! ACATATGTGGAATCTTTTAG+GGG + tig0033496:28077-28096 Msa1451600:intron 30.0%
TAATACTAAAAATGACGGTG+AGG + tig0033496:28127-28146 Msa1451600:intron 30.0%
! CTTTCTTTTAGTCACCAATA+TGG - tig0033496:28317-28336 Msa1451600:intergenic 30.0%
CTAAAAGAAAGATATTGCCT+AGG + tig0033496:28326-28345 Msa1451600:intron 30.0%
ATAACTCCCCAATATGATAA+TGG - tig0033496:28430-28449 Msa1451600:intergenic 30.0%
! TTAATTTGAATGACCAGATC+AGG + tig0033496:28479-28498 Msa1451600:intron 30.0%
! ATTTTCGGTAGGTATCTTTA+CGG + tig0033496:28507-28526 Msa1451600:intron 30.0%
! GACTTATTATGCTATTTGAG+TGG + tig0033496:29756-29775 Msa1451600:intron 30.0%
AGAAATTATCAATGTGTTGG+TGG - tig0033496:28666-28685 Msa1451600:intergenic 30.0%
GACAGAAATTATCAATGTGT+TGG - tig0033496:28669-28688 Msa1451600:intergenic 30.0%
!!! TGTTTTGAAAACTCCATACT+TGG + tig0033496:28840-28859 Msa1451600:intron 30.0%
AAATAGTTAGAGGACCAAAA+AGG - tig0033496:31203-31222 Msa1451600:intergenic 30.0%
TGGTCCTCTAACTATTTAAT+TGG + tig0033496:29031-29050 Msa1451600:intron 30.0%
!! CTATTTAATTGGTATCGGTT+TGG + tig0033496:30195-30214 Msa1451600:intron 30.0%
CAATCGAAATCCGAAAATTA+GGG - tig0033496:30494-30513 Msa1451600:intergenic 30.0%
TCAATCGAAATCCGAAAATT+AGG - tig0033496:30495-30514 Msa1451600:intergenic 30.0%
! AATTTTCGGATTTCGATTGA+AGG + tig0033496:30495-30514 Msa1451600:intron 30.0%
CGATTGAAGGAAAAACAATA+CGG + tig0033496:30508-30527 Msa1451600:intron 30.0%
!! CAATGGATTTCGATTTTGAA+AGG + tig0033496:30556-30575 Msa1451600:intron 30.0%
!! TCTGGGTTTTATACAGTTTT+TGG + tig0033496:30614-30633 Msa1451600:intron 30.0%
!!! ATACAGTTTTTGGAATAGTG+GGG + tig0033496:30624-30643 Msa1451600:intron 30.0%
!!! GGTTTCTTGTTTTCGAAATT+TGG + tig0033496:30645-30664 Msa1451600:intron 30.0%
! TTTGGGATTGTTACAAGTTA+TGG + tig0033496:30663-30682 Msa1451600:intron 30.0%
! TGAATGTTGAAACGATCTTT+TGG + tig0033496:30779-30798 Msa1451600:CDS 30.0%
AAGAGTAAGCCAAATGAAAA+AGG + tig0033496:30828-30847 Msa1451600:CDS 30.0%
! GAATATTGATGGGTATGATA+GGG + tig0033496:30850-30869 Msa1451600:exon 30.0%
!! ATGGTGGAATGAATGATTTT+AGG + tig0033496:30926-30945 Msa1451600:three_prime_UTR 30.0%
!! TAGGTTTGAGTTGATAATGA+TGG + tig0033496:30945-30964 Msa1451600:three_prime_UTR 30.0%
!! CTATTTAATTGGTATCGGTT+TGG - tig0033496:30195-30214 Msa1451600:intergenic 30.0%
TGGTCCTCTAACTATTTAAT+TGG - tig0033496:29031-29050 Msa1451600:intergenic 30.0%
AAATAGTTAGAGGACCAAAA+AGG + tig0033496:31203-31222 Msa1451600:three_prime_UTR 30.0%
TATACAGTCCAACAATTTCA+AGG - tig0033496:31263-31282 Msa1451600:intergenic 30.0%
ACTAAGTGATTATTGTAGAG+GGG + tig0033496:31386-31405 Msa1451600:three_prime_UTR 30.0%
TTGGATAACAACAAATCAGA+AGG + tig0033496:31412-31431 Msa1451600:three_prime_UTR 30.0%
TGGATAACAACAAATCAGAA+GGG + tig0033496:31413-31432 Msa1451600:three_prime_UTR 30.0%
GATCAATAGGAAATACCATA+GGG + tig0033496:31637-31656 Msa1451600:three_prime_UTR 30.0%
GTAAAAAACAAAGTCATGGT+AGG - tig0033496:31789-31808 Msa1451600:intergenic 30.0%
! TGATATTCTTTTCCACATTG+TGG + tig0033496:31856-31875 Msa1451600:three_prime_UTR 30.0%
TGAGAAGCAATTTACATTGA+TGG - tig0033496:31929-31948 Msa1451600:intergenic 30.0%
GACAAAGTAAACCAATCCAA+AGG - tig0033496:25193-25212 Msa1451600:intergenic 35.0%
AATTCACACAAGGATGTCTA+TGG + tig0033496:25214-25233 Msa1451600:CDS 35.0%
TGATCATGTTGAAGAGATTG+AGG + tig0033496:25262-25281 Msa1451600:CDS 35.0%
TGAGGAGAAGTTATCATTGT+TGG + tig0033496:25280-25299 Msa1451600:CDS 35.0%
GCCATTTGAAAAAGTGAAGA+AGG - tig0033496:25350-25369 Msa1451600:intergenic 35.0%
!!! TCTTCACTTTTTCAAATGGC+TGG + tig0033496:25350-25369 Msa1451600:CDS 35.0%
! GATGTGTGAGTGATTACTTT+TGG + tig0033496:25396-25415 Msa1451600:intron 35.0%
AGAGACACATGAAGAAGAAA+TGG + tig0033496:25420-25439 Msa1451600:intron 35.0%
GAGACACATGAAGAAGAAAT+GGG + tig0033496:25421-25440 Msa1451600:intron 35.0%
AGACACATGAAGAAGAAATG+GGG + tig0033496:25422-25441 Msa1451600:intron 35.0%
TTATTGGTCAAGCTGCTTAT+AGG + tig0033496:25450-25469 Msa1451600:intron 35.0%
TATTGGTCAAGCTGCTTATA+GGG + tig0033496:25451-25470 Msa1451600:intron 35.0%
! ATGGCATGTTGCTTCAAAAA+AGG + tig0033496:25481-25500 Msa1451600:intron 35.0%
! TGGCATGTTGCTTCAAAAAA+GGG + tig0033496:25482-25501 Msa1451600:intron 35.0%
!! TTGCTTCAAAAAAGGGTGTT+GGG + tig0033496:25489-25508 Msa1451600:intron 35.0%
CAAGGGATGAAATTAATGGT+TGG + tig0033496:25575-25594 Msa1451600:intron 35.0%
GAAATGATAGCTGCAATCAT+AGG + tig0033496:25603-25622 Msa1451600:CDS 35.0%
!! TGGTATCTTGCTATTGAAAC+TGG + tig0033496:25656-25675 Msa1451600:CDS 35.0%
GGTTAACGCAATTTAGTAGA+TGG + tig0033496:25813-25832 Msa1451600:intron 35.0%
!!! TACAATTTTGGTGTTGGTGT+TGG + tig0033496:26068-26087 Msa1451600:intron 35.0%
!! TGCTTAAGTGTGTCATTTCA+TGG + tig0033496:26209-26228 Msa1451600:intron 35.0%
TGGTTAACAAGATCCTTATC+TGG - tig0033496:26286-26305 Msa1451600:intergenic 35.0%
TGTTATAGGTATCCTTCACA+TGG + tig0033496:26502-26521 Msa1451600:intron 35.0%
TCAGAGATATGAAGATCATG+TGG - tig0033496:26595-26614 Msa1451600:intergenic 35.0%
AGTCAAGATTCCATGTTACA+CGG - tig0033496:26833-26852 Msa1451600:intergenic 35.0%
AGATAGCACGTGACAAAATT+GGG + tig0033496:26884-26903 Msa1451600:intron 35.0%
! CAGTCTTACTCTGTTTTACA+GGG + tig0033496:27245-27264 Msa1451600:intron 35.0%
! TCTGTTTTACACAAGTTTCC+AGG + tig0033496:27307-27326 Msa1451600:intron 35.0%
GACCTCTAATATTGATCCAA+CGG + tig0033496:27443-27462 Msa1451600:intron 35.0%
CACACATAAATAAGAAGTCG+AGG + tig0033496:27528-27547 Msa1451600:intron 35.0%
GACAAAAGTAGCCATTCATA+AGG - tig0033496:27645-27664 Msa1451600:intergenic 35.0%
!! TTTTTCGGATCCTATGTTAG+AGG - tig0033496:28250-28269 Msa1451600:intergenic 35.0%
TCTAACATAGGATCCGAAAA+AGG + tig0033496:28249-28268 Msa1451600:intron 35.0%
ATGACATACTGTCCATGAAA+TGG - tig0033496:28638-28657 Msa1451600:intergenic 35.0%
TTGAAAACTCCATACTTGGT+TGG + tig0033496:28844-28863 Msa1451600:intron 35.0%
ATGTTTATGCCAACCAAGTA+TGG - tig0033496:28856-28875 Msa1451600:intergenic 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG + tig0033496:29058-29077 Msa1451600:intron 35.0%
!! TTTTTCGGATCCTATGTTAG+AGG - tig0033496:28250-28269 Msa1451600:intergenic 35.0%
TCTAACATAGGATCCGAAAA+AGG + tig0033496:28249-28268 Msa1451600:intron 35.0%
ATGACATACTGTCCATGAAA+TGG - tig0033496:28638-28657 Msa1451600:intergenic 35.0%
TTGAAAACTCCATACTTGGT+TGG + tig0033496:28844-28863 Msa1451600:intron 35.0%
ATGTTTATGCCAACCAAGTA+TGG - tig0033496:28856-28875 Msa1451600:intergenic 35.0%
! ATTCCCTAATTTTCGGTTTC+TGG + tig0033496:30596-30615 Msa1451600:intron 35.0%
! TTCCCTAATTTTCGGTTTCT+GGG + tig0033496:30597-30616 Msa1451600:intron 35.0%
AACCCAGAAACCGAAAATTA+GGG - tig0033496:30602-30621 Msa1451600:intergenic 35.0%
AAACCCAGAAACCGAAAATT+AGG - tig0033496:30603-30622 Msa1451600:intergenic 35.0%
!!! TTGAAACGATCTTTTGGAGT+TGG + tig0033496:30785-30804 Msa1451600:CDS 35.0%
TGGAAAGGTTTGGAAGAAAA+TGG + tig0033496:30805-30824 Msa1451600:CDS 35.0%
! GGAATATTGATGGGTATGAT+AGG + tig0033496:30849-30868 Msa1451600:exon 35.0%
TGAGAAGAGGAACAAGATTA+TGG + tig0033496:30907-30926 Msa1451600:three_prime_UTR 35.0%
!! GTTTGAGTTGATAATGATGG+AGG + tig0033496:30948-30967 Msa1451600:three_prime_UTR 35.0%
CTAAGTGATTATTGTAGAGG+GGG + tig0033496:31387-31406 Msa1451600:three_prime_UTR 35.0%
!! ATTTTTGTTGACTGCAGACT+CGG + tig0033496:31562-31581 Msa1451600:three_prime_UTR 35.0%
GGATCAATAGGAAATACCAT+AGG + tig0033496:31636-31655 Msa1451600:three_prime_UTR 35.0%
!!! AATGAGGCTGATGGATTTTA+TGG + tig0033496:31668-31687 Msa1451600:three_prime_UTR 35.0%
!!! ATGAGGCTGATGGATTTTAT+GGG + tig0033496:31669-31688 Msa1451600:three_prime_UTR 35.0%
TACTAATCCAAGACTTCAGA+TGG - tig0033496:31749-31768 Msa1451600:intergenic 35.0%
AAAAACAAAGTCATGGTAGG+TGG - tig0033496:31786-31805 Msa1451600:intergenic 35.0%
ATGCATTCCAAAGTTAGCTC+TGG - tig0033496:25311-25330 Msa1451600:intergenic 40.0%
TGGTGTTTGCCATTCATTGA+GGG + tig0033496:25370-25389 Msa1451600:intron 40.0%
AAGAAATGGGGTGGAGTTAT+TGG + tig0033496:25434-25453 Msa1451600:intron 40.0%
CTGCTTATAGGGAATGGAAA+TGG + tig0033496:25462-25481 Msa1451600:intron 40.0%
! GTTGCTTCAAAAAAGGGTGT+TGG + tig0033496:25488-25507 Msa1451600:intron 40.0%
! GGTGTTGGGAGTCTTAAATA+TGG + tig0033496:25503-25522 Msa1451600:intron 40.0%
!! ATGGCAAACAAAGTGGGTTA+TGG + tig0033496:25522-25541 Msa1451600:intron 40.0%
!! TCTCTTCTTTGGCCTTTTCA+AGG + tig0033496:25557-25576 Msa1451600:intron 40.0%
!! CTCTTCTTTGGCCTTTTCAA+GGG + tig0033496:25558-25577 Msa1451600:intron 40.0%
! CTATAACCGTGAGGTATCTA+TGG + tig0033496:25703-25722 Msa1451600:intron 40.0%
AGGTATCTATGGAAACCCTT+TGG + tig0033496:25714-25733 Msa1451600:intron 40.0%
!! TTGGTGTTGGTGTTGTAGAA+TGG + tig0033496:26081-26100 Msa1451600:intron 40.0%
GTGTTGTAGAATGGTCATCT+TGG + tig0033496:26090-26109 Msa1451600:intron 40.0%
CAGCATCATAGCAAGATAAC+AGG - tig0033496:26119-26138 Msa1451600:intergenic 40.0%
! TTACCTTGCTAGAAGGGTAT+TGG - tig0033496:26163-26182 Msa1451600:intergenic 40.0%
GATCTTGTTAACCAATGTCC+CGG + tig0033496:26292-26311 Msa1451600:intron 40.0%
AACCAATGTCCCGGAATTAT+AGG + tig0033496:26301-26320 Msa1451600:intron 40.0%
! TAGAGAGTGTGGAATTCCAT+GGG + tig0033496:26537-26556 Msa1451600:intron 40.0%
TCATGTGGAGAGATATCAAC+AGG - tig0033496:26580-26599 Msa1451600:intergenic 40.0%
TGAATCTCTATGTGATTGCC+AGG - tig0033496:26637-26656 Msa1451600:intergenic 40.0%
GCAATCACATAGAGATTCAG+TGG + tig0033496:26638-26657 Msa1451600:intron 40.0%
ATCACATAGAGATTCAGTGG+AGG + tig0033496:26641-26660 Msa1451600:intron 40.0%
GGAGAAAGGAACAAACCATA+AGG - tig0033496:26682-26701 Msa1451600:intergenic 40.0%
ATTCCATGTTACACGGATCT+GGG - tig0033496:26826-26845 Msa1451600:intergenic 40.0%
! CAATTTTGTCACGTGCTATC+TGG - tig0033496:26885-26904 Msa1451600:intergenic 40.0%
CAGATAGCACGTGACAAAAT+TGG + tig0033496:26883-26902 Msa1451600:intron 40.0%
GATAGCACGTGACAAAATTG+GGG + tig0033496:26885-26904 Msa1451600:intron 40.0%
CGTTCAATACACCAAATGGT+GGG - tig0033496:27225-27244 Msa1451600:intergenic 40.0%
ACTGCGTTCAATACACCAAA+TGG - tig0033496:27229-27248 Msa1451600:intergenic 40.0%
! GCAGTCTTACTCTGTTTTAC+AGG + tig0033496:27244-27263 Msa1451600:intron 40.0%
! CTTACTCTGTTTTACAGGGA+AGG + tig0033496:27249-27268 Msa1451600:intron 40.0%
CGTTCAATACACCAAATGGT+GGG - tig0033496:27225-27244 Msa1451600:intergenic 40.0%
GTTGTTGTCCTGTGATTGAA+AGG - tig0033496:27347-27366 Msa1451600:intergenic 40.0%
ACTCACCACTATTATGACAG+CGG - tig0033496:27730-27749 Msa1451600:intergenic 40.0%
AGATTCCACATATGTAGGGA+GGG - tig0033496:28072-28091 Msa1451600:intergenic 40.0%
AAGATTCCACATATGTAGGG+AGG - tig0033496:28073-28092 Msa1451600:intergenic 40.0%
! CCAGATCAGGTCACAATTTT+CGG + tig0033496:28492-28511 Msa1451600:intron 40.0%
! ATCAGGTCACAATTTTCGGT+AGG + tig0033496:28496-28515 Msa1451600:intron 40.0%
AGATTCCACATATGTAGGGA+GGG - tig0033496:28072-28091 Msa1451600:intergenic 40.0%
AAGATTCCACATATGTAGGG+AGG - tig0033496:28073-28092 Msa1451600:intergenic 40.0%
! CCAGATCAGGTCACAATTTT+CGG + tig0033496:28492-28511 Msa1451600:intron 40.0%
! ATCAGGTCACAATTTTCGGT+AGG + tig0033496:28496-28515 Msa1451600:intron 40.0%
AGTAACGGTGACAAAGTTAG+AGG - tig0033496:31133-31152 Msa1451600:intergenic 40.0%
GAAAGGACGAAAAGCAGTAA+CGG - tig0033496:31118-31137 Msa1451600:intergenic 40.0%
! GAAAGCACGACATCAATTGA+AGG + tig0033496:30451-30470 Msa1451600:intron 40.0%
!!! ACGATCTTTTGGAGTTGGAA+AGG + tig0033496:30790-30809 Msa1451600:CDS 40.0%
!!! CTTTTGGAGTTGGAAAGGTT+TGG + tig0033496:30795-30814 Msa1451600:CDS 40.0%
GTATGATAGGGAAATTGCAG+TGG + tig0033496:30862-30881 Msa1451600:three_prime_UTR 40.0%
GAAGAGGAACAAGATTATGG+TGG + tig0033496:30910-30929 Msa1451600:three_prime_UTR 40.0%
GAAAGGACGAAAAGCAGTAA+CGG + tig0033496:31118-31137 Msa1451600:three_prime_UTR 40.0%
AGTAACGGTGACAAAGTTAG+AGG + tig0033496:31133-31152 Msa1451600:three_prime_UTR 40.0%
ACAATTTCAAGGACCTCTTC+CGG - tig0033496:31252-31271 Msa1451600:intergenic 40.0%
GAAGAGGTCCTTGAAATTGT+TGG + tig0033496:31252-31271 Msa1451600:three_prime_UTR 40.0%
ACGGAGTTATTTAGTGCAGA+TGG + tig0033496:31491-31510 Msa1451600:three_prime_UTR 40.0%
CGGAGTTATTTAGTGCAGAT+GGG + tig0033496:31492-31511 Msa1451600:three_prime_UTR 40.0%
GGAGTTATTTAGTGCAGATG+GGG + tig0033496:31493-31512 Msa1451600:three_prime_UTR 40.0%
GAGTTATTTAGTGCAGATGG+GGG + tig0033496:31494-31513 Msa1451600:three_prime_UTR 40.0%
AGGAAATACCATAGGGAAGA+AGG + tig0033496:31644-31663 Msa1451600:three_prime_UTR 40.0%
!!! TGAGGCTGATGGATTTTATG+GGG + tig0033496:31670-31689 Msa1451600:three_prime_UTR 40.0%
TTTCCATTTGGAAACGCATG+TGG + tig0033496:31723-31742 Msa1451600:three_prime_UTR 40.0%
AATGGGTGATAACCACAATG+TGG - tig0033496:31871-31890 Msa1451600:intergenic 40.0%
ACACAAGGATGTCTATGGTG+AGG + tig0033496:25219-25238 Msa1451600:CDS 45.0%
CTGGTGTTTGCCATTCATTG+AGG + tig0033496:25369-25388 Msa1451600:intron 45.0%
CACATCTCTCCCTCAATGAA+TGG - tig0033496:25382-25401 Msa1451600:intergenic 45.0%
CACATGAAGAAGAAATGGGG+TGG + tig0033496:25425-25444 Msa1451600:intron 45.0%
GTCAAGCTGCTTATAGGGAA+TGG + tig0033496:25456-25475 Msa1451600:intron 45.0%
CTATTGAAACTGGCAGCTTC+TGG + tig0033496:25666-25685 Msa1451600:CDS 45.0%
TCACGGTTATAGACTTGAGC+AGG - tig0033496:25695-25714 Msa1451600:intergenic 45.0%
TGCTCAAGTCTATAACCGTG+AGG + tig0033496:25694-25713 Msa1451600:intron 45.0%
GGGTTTCCATAGATACCTCA+CGG - tig0033496:25712-25731 Msa1451600:intergenic 45.0%
TTGCAGCTAACAGTATGGTG+TGG - tig0033496:25989-26008 Msa1451600:intergenic 45.0%
GAACCAATACCCTTCTAGCA+AGG + tig0033496:26157-26176 Msa1451600:CDS 45.0%
AGCCTATAATTCCGGGACAT+TGG - tig0033496:26306-26325 Msa1451600:intergenic 45.0%
GCTTCTCTTCTTCCATGTGA+AGG - tig0033496:26517-26536 Msa1451600:intergenic 45.0%
AGAAGAGAAGCTAGAGAGTG+TGG + tig0033496:26526-26545 Msa1451600:intron 45.0%
! CTAGAGAGTGTGGAATTCCA+TGG + tig0033496:26536-26555 Msa1451600:intron 45.0%
AGTGTGGAATTCCATGGGAA+AGG + tig0033496:26542-26561 Msa1451600:intron 45.0%
TGTGGAGAGATATCAACAGG+AGG - tig0033496:26577-26596 Msa1451600:intergenic 45.0%
TTCCATGTTACACGGATCTG+GGG - tig0033496:26825-26844 Msa1451600:intergenic 45.0%
GATTCCATGTTACACGGATC+TGG - tig0033496:26827-26846 Msa1451600:intergenic 45.0%
! TTTTGTCACGTGCTATCTGG+AGG - tig0033496:26882-26901 Msa1451600:intergenic 45.0%
GCGTTCAATACACCAAATGG+TGG - tig0033496:27226-27245 Msa1451600:intergenic 45.0%
GCGTTCAATACACCAAATGG+TGG - tig0033496:27226-27245 Msa1451600:intergenic 45.0%
GCTGCGTTCAATACACCAAA+TGG - tig0033496:27282-27301 Msa1451600:intergenic 45.0%
TCCTGTGATTGAAAGGTCAC+GGG - tig0033496:27340-27359 Msa1451600:intergenic 45.0%
GTCCTGTGATTGAAAGGTCA+CGG - tig0033496:27341-27360 Msa1451600:intergenic 45.0%
CAACTTTACCAGTTGCGCTA+AGG + tig0033496:27363-27382 Msa1451600:intron 45.0%
GGCCGTTGGATCAATATTAG+AGG - tig0033496:27448-27467 Msa1451600:intergenic 45.0%
CTAAGGTTTATAGTGGCCGT+TGG - tig0033496:27462-27481 Msa1451600:intergenic 45.0%
!!! TGAATGGCTACTTTTGTCGC+AGG + tig0033496:27647-27666 Msa1451600:intron 45.0%
CATTGCCGCTGTCATAATAG+TGG + tig0033496:27722-27741 Msa1451600:intron 45.0%
!! TATGTAGGGAGGGTATTGCA+CGG - tig0033496:28062-28081 Msa1451600:intergenic 45.0%
CAATACCCTCCCTACATATG+TGG + tig0033496:28064-28083 Msa1451600:intron 45.0%
CACTGAAGCTCCTCTAACAT+AGG + tig0033496:28237-28256 Msa1451600:intron 45.0%
CCGAAAATTGTGACCTGATC+TGG - tig0033496:28495-28514 Msa1451600:intergenic 45.0%
! GTGGTCTTGAAGCCATTTCA+TGG + tig0033496:28623-28642 Msa1451600:intron 45.0%
!! TATGTAGGGAGGGTATTGCA+CGG - tig0033496:28062-28081 Msa1451600:intergenic 45.0%
CAATACCCTCCCTACATATG+TGG + tig0033496:28064-28083 Msa1451600:intron 45.0%
CACTGAAGCTCCTCTAACAT+AGG + tig0033496:28237-28256 Msa1451600:intron 45.0%
CCGAAAATTGTGACCTGATC+TGG - tig0033496:28495-28514 Msa1451600:intergenic 45.0%
! GTGGTCTTGAAGCCATTTCA+TGG + tig0033496:28623-28642 Msa1451600:intron 45.0%
! GATTATTGTAGAGGGGGCAT+TGG + tig0033496:31393-31412 Msa1451600:three_prime_UTR 45.0%
GAGTTCAACCATTACACTCC+TGG + tig0033496:31593-31612 Msa1451600:three_prime_UTR 45.0%
! ATCTTGAGCCAGGAGTGTAA+TGG - tig0033496:31604-31623 Msa1451600:intergenic 45.0%
ATTACACTCCTGGCTCAAGA+TGG + tig0033496:31603-31622 Msa1451600:three_prime_UTR 45.0%
GGAGACAGACTAGGATCAAT+AGG + tig0033496:31624-31643 Msa1451600:three_prime_UTR 45.0%
CCTCATTTCCTTCTTCCCTA+TGG - tig0033496:31655-31674 Msa1451600:intergenic 45.0%
CCATAGGGAAGAAGGAAATG+AGG + tig0033496:31652-31671 Msa1451600:three_prime_UTR 45.0%
GAAGAAGGAAATGAGGCTGA+TGG + tig0033496:31659-31678 Msa1451600:three_prime_UTR 45.0%
!!! GAGGCTGATGGATTTTATGG+GGG + tig0033496:31671-31690 Msa1451600:three_prime_UTR 45.0%
!! ATAAATATAAATATATATAG+AGG + tig0033496:28193-28212 Msa1451600:intron 5.0%
!! ATAGTTTATATAAATATTAT+TGG - tig0033496:28281-28300 Msa1451600:intergenic 5.0%
!!! ATATTTATAATTTTTTTTAG+TGG - tig0033496:28565-28584 Msa1451600:intergenic 5.0%
!! AAATATATAAATATATATAG+AGG + tig0033496:29344-29363 Msa1451600:intron 5.0%
!! ATAGTTTATATAAATATTAT+TGG - tig0033496:28281-28300 Msa1451600:intergenic 5.0%
!!! ATATTTATAATTTTTTTTAG+TGG - tig0033496:28565-28584 Msa1451600:intergenic 5.0%
GGACTTGCCAGAGCTAACTT+TGG + tig0033496:25301-25320 Msa1451600:CDS 50.0%
TTCCCCAGATCCGTGTAACA+TGG + tig0033496:26820-26839 Msa1451600:intron 50.0%
ACCCGTGACCTTTCAATCAC+AGG + tig0033496:27336-27355 Msa1451600:intron 50.0%
!!! TGGCTACTTTTGTCGCAGGT+TGG + tig0033496:27651-27670 Msa1451600:intron 50.0%
!! CTACTTTTGTCGCAGGTTGG+TGG + tig0033496:27654-27673 Msa1451600:intron 50.0%
!! TTTGTCGCAGGTTGGTGGTA+TGG + tig0033496:27659-27678 Msa1451600:intron 50.0%
!! AGGTTGGTGGTATGGTGTTG+TGG + tig0033496:27667-27686 Msa1451600:intron 50.0%
!! GGTTGGTGGTATGGTGTTGT+GGG + tig0033496:27668-27687 Msa1451600:intron 50.0%
!! GTATGGTGTTGTGGGTCACT+TGG + tig0033496:27676-27695 Msa1451600:intron 50.0%
!! ATGTAGGGAGGGTATTGCAC+GGG - tig0033496:28061-28080 Msa1451600:intergenic 50.0%
!! ATGTAGGGAGGGTATTGCAC+GGG - tig0033496:28061-28080 Msa1451600:intergenic 50.0%
CAACAGCAACACGACAGCAA+TGG + tig0033496:30539-30558 Msa1451600:intron 50.0%
GCTCAAGATGGAGACAGACT+AGG + tig0033496:31615-31634 Msa1451600:three_prime_UTR 50.0%
TGGCCACATGCGTTTCCAAA+TGG - tig0033496:31729-31748 Msa1451600:intergenic 50.0%
! CATGTGGCCATCTGAAGTCT+TGG + tig0033496:31739-31758 Msa1451600:three_prime_UTR 50.0%
! GGTGCTCTTAGCCTTTCCCA+TGG - tig0033496:26556-26575 Msa1451600:intergenic 55.0%
ACCTGTTGCACTAGAGCTCC+CGG + tig0033496:27176-27195 Msa1451600:intron 55.0%
TTCCCGGACACTGCATATCC+GGG - tig0033496:27197-27216 Msa1451600:intergenic 55.0%
CTTCCCGGACACTGCATATC+CGG - tig0033496:27198-27217 Msa1451600:intergenic 55.0%
! CAAATGGTGGGACTCCTTCC+CGG - tig0033496:27213-27232 Msa1451600:intergenic 55.0%
AGGGAAGGAGTCCCACCATT+TGG + tig0033496:27264-27283 Msa1451600:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - tig0033496:27328-27347 Msa1451600:intergenic 55.0%
GAGGGTAACCTTAGCGCAAC+TGG - tig0033496:27374-27393 Msa1451600:intergenic 55.0%
GTCTGTCTCCATCTTGAGCC+AGG - tig0033496:31614-31633 Msa1451600:intergenic 55.0%
! TCCGGGAGCTCTAGTGCAAC+AGG - tig0033496:27180-27199 Msa1451600:intergenic 60.0%
GCTCCCGGATATGCAGTGTC+CGG + tig0033496:27191-27210 Msa1451600:intron 60.0%
CTCCCGGATATGCAGTGTCC+GGG + tig0033496:27192-27211 Msa1451600:intron 60.0%
CGGATATGCAGTGTCCGGGA+AGG + tig0033496:27196-27215 Msa1451600:intron 60.0%
CGGGAAGGAGTCCCACCATT+TGG + tig0033496:27211-27230 Msa1451600:intron 60.0%
Chromosome Type Strat End Strand Name
tig0033496 gene 25137 31968 25137 ID=Msa1451600;Name=Msa1451600
tig0033496 mRNA 25137 31968 25137 ID=Msa1451600-mRNA-1;Parent=Msa1451600;Name=Msa1451600-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0.4|0.8|1|1|5|1110|185
tig0033496 exon 25137 25371 25137 ID=Msa1451600-mRNA-1:exon:18133;Parent=Msa1451600-mRNA-1
tig0033496 exon 25579 25700 25579 ID=Msa1451600-mRNA-1:exon:18134;Parent=Msa1451600-mRNA-1
tig0033496 exon 26099 26178 26099 ID=Msa1451600-mRNA-1:exon:18135;Parent=Msa1451600-mRNA-1
tig0033496 exon 28412 28418 28412 ID=Msa1451600-mRNA-1:exon:18136;Parent=Msa1451600-mRNA-1
tig0033496 exon 30745 31968 30745 ID=Msa1451600-mRNA-1:exon:18137;Parent=Msa1451600-mRNA-1
tig0033496 CDS 25137 25371 25137 ID=Msa1451600-mRNA-1:cds;Parent=Msa1451600-mRNA-1
tig0033496 CDS 25579 25700 25579 ID=Msa1451600-mRNA-1:cds;Parent=Msa1451600-mRNA-1
tig0033496 CDS 26099 26178 26099 ID=Msa1451600-mRNA-1:cds;Parent=Msa1451600-mRNA-1
tig0033496 CDS 28412 28418 28412 ID=Msa1451600-mRNA-1:cds;Parent=Msa1451600-mRNA-1
tig0033496 CDS 30745 30858 30745 ID=Msa1451600-mRNA-1:cds;Parent=Msa1451600-mRNA-1
tig0033496 three_prime_UTR 30859 31968 30859 ID=Msa1451600-mRNA-1:three_prime_utr;Parent=Msa1451600-mRNA-1
Gene Sequence

>Msa1451600

ATGAAGCACCAAGTGTTGTCTTTGAAAACATTCTCCAAGTTGTTTAAGAATCACCTTTGGATTGGTTTACTTTGTCAAATTCACACAAGGATGTCTATGGTGAGGAAGAGTCTTAGTTCAAGAGTTGATCATGTTGAAGAGATTGAGGAGAAGTTATCATTGTTGGACTTGCCAGAGCTAACTTTGGAATGCATACTTGAAAAGTTACCTCCTTCTTCACTTTTTCAAATGGCTGGGATGAAATTAATGGTTGGTGATGGAAATGATAGCTGCAATCATAGGAATTCATTGCCTGTTGATTCTGTTATGAATTGGTATCTTGCTATTGAAACTGGCAGCTTCTGGTTTCCTGCTCAAAATGGTCATCTTGGTTTCCTGTTATCTTGCTATGATGCTGAACTTAGCTATGATTCGCGAACCAATACCCTTCTAGCAAGAAGCTATCAAATGGAGAACGAGAACAAATTGAGAATTAAATTGAATGTTGAAACGATCTTTTGGAGTTGGAAAGGTTTGGAAGAAAATGGAAGAGTAAGCCAAATGAAAAAGGAATATTGA
Protein sequence

>Msa1451600

MKHQVLSLKTFSKLFKNHLWIGLLCQIHTRMSMVRKSLSSRVDHVEEIEEKLSLLDLPELTLECILEKLPPSSLFQMAGMKLMVGDGNDSCNHRNSLPVDSVMNWYLAIETGSFWFPAQNGHLGFLLSCYDAELSYDSRTNTLLARSYQMENENKLRIKLNVETIFWSWKGLEENGRVSQMKKEY*