AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0357250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0357250 MtrunA17_Chr3g0094081 82.332 283 19 4 32 283 7 289 3.14e-165 463
Msa0357250 MtrunA17_Chr5g0441461 55.385 325 91 12 1 283 1 313 2.22e-101 302
Msa0357250 MtrunA17_Chr7g0256121 50.847 236 93 3 70 283 74 308 2.78e-61 199
Msa0357250 MtrunA17_Chr7g0256161 41.485 229 97 6 84 283 10 230 1.58e-42 149
Msa0357250 MtrunA17_Chr7g0256131 37.946 224 111 5 81 282 11 228 1.33e-41 145
Msa0357250 MtrunA17_Chr7g0256151 35.772 246 115 6 66 281 1 233 2.13e-35 128
Msa0357250 MtrunA17_Chr7g0256141 37.118 229 101 6 83 281 19 234 3.71e-35 129
Msa0357250 MtrunA17_Chr6g0465451 34.483 232 109 7 83 284 18 236 2.43e-30 116
Msa0357250 MtrunA17_Chr7g0256061 61.290 62 24 0 70 131 74 135 1.77e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0357250 AT2G32560.2 44.089 313 118 8 1 283 1 286 2.60e-76 236
Msa0357250 AT2G32560.1 44.089 313 118 8 1 283 1 286 6.77e-76 236
Msa0357250 AT2G26850.2 43.910 312 119 8 1 283 1 285 1.62e-72 225
Msa0357250 AT2G26850.1 43.450 313 119 8 1 283 1 285 2.19e-70 222
Msa0357250 AT2G41170.3 44.758 248 97 6 71 283 44 286 6.49e-55 180
Msa0357250 AT2G41170.1 44.758 248 97 6 71 283 44 286 1.20e-53 179
Msa0357250 AT2G41170.2 44.758 248 97 6 71 283 44 286 2.08e-53 179

Find 108 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGGAATTATCATATATTT+AGG 0.232676 3_1:-38591607 Msa0357250:three_prime_UTR
TGGTCCTCTAACTATTTAAT+TGG 0.266222 3_1:+38592238 None:intergenic
TTATTGGTCAAGCTGCTTAT+AGG 0.268138 3_1:-38596831 Msa0357250:CDS
CTATTGAAACTGGCAGCTTC+TGG 0.273408 3_1:-38596615 Msa0357250:CDS
TGAATGTTGAAACGATCTTT+TGG 0.280132 3_1:-38592657 Msa0357250:three_prime_UTR
TGGAAAGGTTTGGAAGAAAA+TGG 0.281968 3_1:-38592631 Msa0357250:three_prime_UTR
TGAGAAGCAATTTACATTGA+TGG 0.293260 3_1:+38591508 None:intergenic
AAGAAATGGGGTGGAGTTAT+TGG 0.308285 3_1:-38596847 Msa0357250:CDS
TATTGGTCAAGCTGCTTATA+GGG 0.310671 3_1:-38596830 Msa0357250:CDS
GGAATATTGATGGGTATGAT+AGG 0.312388 3_1:-38592587 Msa0357250:three_prime_UTR
AGAAAATTTACCTTGCTAGA+AGG 0.316417 3_1:+38596115 None:intergenic
TGTGGAAAAGAATATCAAAT+TGG 0.349001 3_1:+38591584 None:intergenic
TGAGAAGAGGAACAAGATTA+TGG 0.361100 3_1:-38592529 Msa0357250:three_prime_UTR
AAGAGTAAGCCAAATGAAAA+AGG 0.362563 3_1:-38592608 Msa0357250:three_prime_UTR
TGGTATCTTGCTATTGAAAC+TGG 0.365562 3_1:-38596625 Msa0357250:CDS
TTACCTTGCTAGAAGGGTAT+TGG 0.378676 3_1:+38596122 None:intergenic
TATACAGTCCAACAATTTCA+AGG 0.385642 3_1:+38592175 None:intergenic
AGAGACACATGAAGAAGAAA+TGG 0.390116 3_1:-38596861 Msa0357250:CDS
ATGGCAAACAAAGTGGGTTA+TGG 0.390808 3_1:-38596759 Msa0357250:CDS
ATGAGAATGAAATTTCCATT+TGG 0.398780 3_1:-38591723 Msa0357250:three_prime_UTR
TGAGGAGAAGTTATCATTGT+TGG 0.399408 3_1:-38597001 Msa0357250:CDS
GGAGACAGACTAGGATCAAT+AGG 0.403977 3_1:-38591810 Msa0357250:three_prime_UTR
TTCTAAAATCATTCCCATCA+TGG 0.405957 3_1:-38597182 Msa0357250:CDS
ATTAATTTCATCCCTTGAAA+AGG 0.407791 3_1:+38596712 None:intergenic
GGTGTGTGAGTGATTACTTT+TGG 0.408241 3_1:-38596885 Msa0357250:CDS
CTATTTAATTGGTATCGGTT+TGG 0.409887 3_1:+38592249 None:intergenic
CAGCATCATAGCAAGATAAC+AGG 0.411746 3_1:+38596166 None:intergenic
GATACCAATTAAATAGTTAG+AGG 0.424501 3_1:-38592242 Msa0357250:three_prime_UTR
CCTCATTTCCTTCTTCCCTA+TGG 0.427469 3_1:+38591782 None:intergenic
CTTAAATATGGCAAACAAAG+TGG 0.431167 3_1:-38596766 Msa0357250:CDS
AAATAGTTAGAGGACCAAAA+AGG 0.431203 3_1:-38592232 Msa0357250:three_prime_UTR
ATTGCATCAAATTTAAATCA+AGG 0.432108 3_1:-38592114 Msa0357250:three_prime_UTR
TGTTTAAATGATTTGCATCC+TGG 0.435950 3_1:-38595666 Msa0357250:CDS
AATTCACACAAGGATGTCTA+TGG 0.439355 3_1:-38597067 Msa0357250:intron
AGTTGTTTAAGAATCACCTT+TGG 0.440891 3_1:-38597107 Msa0357250:CDS
GAAAAGGTCCTTGAAATTGT+TGG 0.442962 3_1:-38592183 Msa0357250:three_prime_UTR
TAGGTTTGAGTTGATAATGA+TGG 0.443366 3_1:-38592491 Msa0357250:three_prime_UTR
TGATCATGTTGAAGAGATTG+AGG 0.446335 3_1:-38597019 Msa0357250:CDS
CTGTTGATTCTGTTATGAAT+TGG 0.447633 3_1:-38596645 Msa0357250:CDS
CAAGAATATATACAACTTGA+AGG 0.453779 3_1:-38591626 Msa0357250:three_prime_UTR
GTCTGTCTCCATCTTGAGCC+AGG 0.453925 3_1:+38591823 None:intergenic
GAAAATTTACCTTGCTAGAA+GGG 0.455807 3_1:+38596116 None:intergenic
TCTAACTATTTAATTGGTAT+CGG 0.457559 3_1:+38592244 None:intergenic
TTTGCCATTCATTGAGGGAG+AGG 0.463802 3_1:-38596906 Msa0357250:CDS
GAGACACATGAAGAAGAAAT+GGG 0.464075 3_1:-38596860 Msa0357250:CDS
GAAATGATAGCTGCAATCAT+AGG 0.468430 3_1:-38596678 Msa0357250:CDS
ACGGAGTTATTTAGTGCAGA+TGG 0.468790 3_1:-38591943 Msa0357250:three_prime_UTR
AGGAAATACCATAGGGAAGA+AGG 0.471979 3_1:-38591790 Msa0357250:three_prime_UTR
TTTGTTTATAATATCAGAGA+TGG 0.473229 3_1:-38592078 Msa0357250:three_prime_UTR
TTTAAGAATCACCTTTGGAT+TGG 0.474459 3_1:-38597102 Msa0357250:CDS
TCATGTGGAGAGATATCAAC+AGG 0.476304 3_1:+38595705 None:intergenic
GTGTTGTAGAATGGTCATCT+TGG 0.481169 3_1:-38596192 Msa0357250:intron
GTCAAGCTGCTTATAGGGAA+TGG 0.482088 3_1:-38596825 Msa0357250:CDS
TGGCCACATGCGTTTCCAAA+TGG 0.484507 3_1:+38591708 None:intergenic
CACACCTCTCCCTCAATGAA+TGG 0.486048 3_1:+38596902 None:intergenic
CGGAGTTATTTAGTGCAGAT+GGG 0.486119 3_1:-38591942 Msa0357250:three_prime_UTR
GGACTTGCCAGAGCTAACTT+TGG 0.486829 3_1:-38596980 Msa0357250:CDS
CTGCTTATAGGGAATGGAAA+TGG 0.494975 3_1:-38596819 Msa0357250:CDS
GGTGTTGGGAGTCTTAAATA+TGG 0.497305 3_1:-38596778 Msa0357250:CDS
CATGTGGCCATCTGAAGTCT+TGG 0.498956 3_1:-38591695 Msa0357250:three_prime_UTR
AGTAACGGTGACAAAGTTAG+AGG 0.499028 3_1:-38592302 Msa0357250:three_prime_UTR
TGGTGTTTGCCATTCATTGA+GGG 0.502353 3_1:-38596911 Msa0357250:CDS
CAAGGGATGAAATTAATGGT+TGG 0.513850 3_1:-38596706 Msa0357250:CDS
AAACTAAGTGATTATTGTAG+AGG 0.520541 3_1:-38592051 Msa0357250:three_prime_UTR
GGATCAATAGGAAATACCAT+AGG 0.523417 3_1:-38591798 Msa0357250:three_prime_UTR
AACTAAGTGATTATTGTAGA+GGG 0.525828 3_1:-38592050 Msa0357250:three_prime_UTR
TTTGAATAAATCTGACAGAA+AGG 0.526955 3_1:-38592334 Msa0357250:three_prime_UTR
AAGGTGATTCTTAAACAACT+TGG 0.529166 3_1:+38597110 None:intergenic
CAATTCATAACAGAATCAAC+AGG 0.536613 3_1:+38596646 None:intergenic
TGAATCTCTATGTGATTGCC+AGG 0.537023 3_1:+38595648 None:intergenic
ATGCATTCCAAAGTTAGCTC+TGG 0.537840 3_1:+38596973 None:intergenic
GAATATTGATGGGTATGATA+GGG 0.538460 3_1:-38592586 Msa0357250:three_prime_UTR
GTTTGAGTTGATAATGATGG+AGG 0.551351 3_1:-38592488 Msa0357250:three_prime_UTR
TACTAATCCAAGACTTCAGA+TGG 0.551802 3_1:+38591688 None:intergenic
TCACGGTTATAGACTTGAGC+AGG 0.560717 3_1:+38596589 None:intergenic
ACTAATTTAGAATTGAGAAG+AGG 0.563122 3_1:-38592542 Msa0357250:three_prime_UTR
ATTACACTCCTGGCTCAAGA+TGG 0.564696 3_1:-38591831 Msa0357250:three_prime_UTR
GAGTTCAACCATTACACTCC+TGG 0.567077 3_1:-38591841 Msa0357250:three_prime_UTR
TTGGATAACAACAAATCAGA+AGG 0.569451 3_1:-38592022 Msa0357250:three_prime_UTR
GATCAATAGGAAATACCATA+GGG 0.570468 3_1:-38591797 Msa0357250:three_prime_UTR
ACTAAGTGATTATTGTAGAG+GGG 0.572868 3_1:-38592049 Msa0357250:three_prime_UTR
CCATAGGGAAGAAGGAAATG+AGG 0.573165 3_1:-38591782 Msa0357250:three_prime_UTR
CTGGTGTTTGCCATTCATTG+AGG 0.574818 3_1:-38596912 Msa0357250:CDS
AAGAATATATACAACTTGAA+GGG 0.575309 3_1:-38591625 Msa0357250:three_prime_UTR
ATCTTGAGCCAGGAGTGTAA+TGG 0.578616 3_1:+38591833 None:intergenic
GAAGAAGGAAATGAGGCTGA+TGG 0.579595 3_1:-38591775 Msa0357250:three_prime_UTR
CTAAGTGATTATTGTAGAGG+GGG 0.581108 3_1:-38592048 Msa0357250:three_prime_UTR
TTAAATATGGCAAACAAAGT+GGG 0.582651 3_1:-38596765 Msa0357250:CDS
ATGAAATTAATGGTTGGTGA+TGG 0.589442 3_1:-38596700 Msa0357250:CDS
TTTCCATTTGGAAACGCATG+TGG 0.589957 3_1:-38591711 Msa0357250:three_prime_UTR
GGAGTTATTTAGTGCAGATG+GGG 0.590114 3_1:-38591941 Msa0357250:three_prime_UTR
TACTTTGTCAAATTCACACA+AGG 0.593265 3_1:-38597077 Msa0357250:CDS
GCTCAAGATGGAGACAGACT+AGG 0.596676 3_1:-38591819 Msa0357250:three_prime_UTR
GCAATCACATAGAGATTCAG+TGG 0.599756 3_1:-38595644 Msa0357250:CDS
GAAGAGGAACAAGATTATGG+TGG 0.604516 3_1:-38592526 Msa0357250:three_prime_UTR
GACAAAGTAAACCAATCCAA+AGG 0.614893 3_1:+38597091 None:intergenic
CACATGAAGAAGAAATGGGG+TGG 0.618879 3_1:-38596856 Msa0357250:CDS
TCAGAGATATGAAGATCATG+TGG 0.622183 3_1:+38595690 None:intergenic
GAACCAATACCCTTCTAGCA+AGG 0.643683 3_1:-38596125 Msa0357250:intron
GAGTTATTTAGTGCAGATGG+GGG 0.648090 3_1:-38591940 Msa0357250:three_prime_UTR
GAAAGGACGAAAAGCAGTAA+CGG 0.654130 3_1:-38592317 Msa0357250:three_prime_UTR
GTATGATAGGGAAATTGCAG+TGG 0.662662 3_1:-38592574 Msa0357250:three_prime_UTR
TGGATAACAACAAATCAGAA+GGG 0.662974 3_1:-38592021 Msa0357250:three_prime_UTR
TAAGTGATTATTGTAGAGGG+GGG 0.682763 3_1:-38592047 Msa0357250:three_prime_UTR
AATGGGTGATAACCACAATG+TGG 0.685695 3_1:+38591566 None:intergenic
AGACACATGAAGAAGAAATG+GGG 0.695841 3_1:-38596859 Msa0357250:CDS
ATCACATAGAGATTCAGTGG+AGG 0.714698 3_1:-38595641 Msa0357250:CDS
TGTGGAGAGATATCAACAGG+AGG 0.726181 3_1:+38595708 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATTTCAACATTTTTAT+CGG - chr3_1:38594041-38594060 Msa0357250:intron 10.0%
!! ATTATAAATATATCAAAATG+TGG - chr3_1:38595023-38595042 Msa0357250:intron 10.0%
!!! TTTTAAGAATGAAATTTAAA+AGG - chr3_1:38595327-38595346 Msa0357250:intron 10.0%
!! TTTAAGAATGAAATTTAAAA+GGG - chr3_1:38595328-38595347 Msa0357250:intron 10.0%
!!! ATGAAAATTTTGAAATAAAT+AGG - chr3_1:38595447-38595466 Msa0357250:intron 10.0%
!!! AACTAAAAATTGATTTATTT+CGG - chr3_1:38595524-38595543 Msa0357250:intron 10.0%
!!! AGTTTTATTAAAAAAACATT+AGG - chr3_1:38595590-38595609 Msa0357250:intron 10.0%
!!! GTTTTATTAAAAAAACATTA+GGG - chr3_1:38595591-38595610 Msa0357250:intron 10.0%
!!! AACTAAAAATTGATTTATTT+CGG + chr3_1:38595524-38595543 None:intergenic 10.0%
!!! AATTTTCATAACAAATTAGA+TGG + chr3_1:38592368-38592387 None:intergenic 15.0%
!!! TTATTTTCAATGGAATTTAA+TGG - chr3_1:38592482-38592501 Msa0357250:three_prime_UTR 15.0%
!! GAATCTATTATGTATTAAAT+TGG - chr3_1:38592686-38592705 Msa0357250:CDS 15.0%
!! TAGTTAATAGAATTAATACA+TGG + chr3_1:38593177-38593196 None:intergenic 15.0%
!!! AATTATGAGAAATGATATTT+TGG - chr3_1:38593567-38593586 Msa0357250:intron 15.0%
!!! TATTTTATTAACCTTATGAA+TGG - chr3_1:38594093-38594112 Msa0357250:intron 15.0%
!! AAAGATAATACTAAAAATGA+CGG - chr3_1:38594586-38594605 Msa0357250:intron 15.0%
!! TCTAAATATATATCAAAATG+TGG - chr3_1:38594987-38595006 Msa0357250:intron 15.0%
!! GGAACAAATATAAAATTTAA+TGG + chr3_1:38595174-38595193 None:intergenic 15.0%
!!! ATAAATCAATTTTTAGTTAG+AGG + chr3_1:38596464-38596483 None:intergenic 15.0%
!!! TGTTTTTTTAATAAAACTGA+CGG + chr3_1:38595588-38595607 None:intergenic 15.0%
!!! ATTTATGTTGTTTGTTTTTT+TGG - chr3_1:38596280-38596299 Msa0357250:intron 15.0%
!!! GATTTATTCAAATTTTGTTA+GGG + chr3_1:38596395-38596414 None:intergenic 15.0%
!!! AGATTTATTCAAATTTTGTT+AGG + chr3_1:38596396-38596415 None:intergenic 15.0%
!!! ATAAATCAATTTTTAGTTAG+AGG - chr3_1:38596464-38596483 Msa0357250:intron 15.0%
!! ATTAATGTAGTTCAAATAAG+TGG - chr3_1:38592249-38592268 Msa0357250:three_prime_UTR 20.0%
!!! ATCAATTGCTTTATTTTCAA+TGG - chr3_1:38592472-38592491 Msa0357250:three_prime_UTR 20.0%
!! CAAGACAAAATTTCTATTTA+TGG + chr3_1:38592791-38592810 None:intergenic 20.0%
!!! TGGTAAGATTTTATCAAAAA+TGG + chr3_1:38592853-38592872 None:intergenic 20.0%
!! ATTGGTTAAACAACTTAAAA+TGG + chr3_1:38592873-38592892 None:intergenic 20.0%
!!! ATTAAATGATTGCTTGTTAT+AGG - chr3_1:38592943-38592962 Msa0357250:intron 20.0%
!! AGAAAAAAAGAATTTCCTTA+TGG - chr3_1:38593119-38593138 Msa0357250:intron 20.0%
!! TACATGGAATTAAAAAATGA+TGG + chr3_1:38593161-38593180 None:intergenic 20.0%
!! GTTCAAAAATTGTCAAAAAA+TGG + chr3_1:38593402-38593421 None:intergenic 20.0%
!!! TTTTTATTGGTCAAAAACAA+TGG + chr3_1:38593485-38593504 None:intergenic 20.0%
!!! TTGTTTTTCTCTCTTTTTAT+TGG + chr3_1:38593498-38593517 None:intergenic 20.0%
!! AATAAAAAGAGAGAAAAACA+AGG - chr3_1:38593497-38593516 Msa0357250:intron 20.0%
!! GTCACAATAATCTTAAAAAA+AGG - chr3_1:38593609-38593628 Msa0357250:intron 20.0%
!! CTATCTAAAAAAACTATCAA+AGG + chr3_1:38593941-38593960 None:intergenic 20.0%
!!! TTCTTATTGGTTAAAAACAA+TGG - chr3_1:38594294-38594313 Msa0357250:intron 20.0%
!! ATAAATACCAATCATACAAA+AGG + chr3_1:38594424-38594443 None:intergenic 20.0%
!! TGAAACTATTCAACTAAAAT+GGG + chr3_1:38594495-38594514 None:intergenic 20.0%
!! ATGAAACTATTCAACTAAAA+TGG + chr3_1:38594496-38594515 None:intergenic 20.0%
!! TATATATAGAGGTTATAAAG+AGG - chr3_1:38594663-38594682 Msa0357250:intron 20.0%
!! TGTTTATAAAGATACCATAT+TGG - chr3_1:38594749-38594768 Msa0357250:intron 20.0%
!! TAATCAACCATTATCATATT+GGG - chr3_1:38594869-38594888 Msa0357250:intron 20.0%
!! AATAGCATAATAAGTTTAAG+TGG + chr3_1:38595050-38595069 None:intergenic 20.0%
!! ACATGTATTTATATGTTTCA+CGG + chr3_1:38595244-38595263 None:intergenic 20.0%
!!! AATAGGTTAAATTACCTTTT+TGG - chr3_1:38595464-38595483 Msa0357250:intron 20.0%
!! TCTAACTATTTAATTGGTAT+CGG - chr3_1:38595490-38595509 Msa0357250:intron 20.0%
!! AAAATTGAATGATACAAATC+TGG - chr3_1:38595678-38595697 Msa0357250:CDS 20.0%
!!! TGATTTTTTTTCTTTGTTGT+TGG - chr3_1:38595705-38595724 Msa0357250:CDS 20.0%
!!! GATTTTTTTTCTTTGTTGTT+GGG - chr3_1:38595706-38595725 Msa0357250:CDS 20.0%
!!! AATCTTAAATCCCTAATTTT+CGG - chr3_1:38595782-38595801 Msa0357250:intron 20.0%
!!! AATCTTTATTCCCTAATTTT+CGG - chr3_1:38595890-38595909 Msa0357250:intron 20.0%
!!! ATCAATATTCCTTTTTCATT+TGG + chr3_1:38596141-38596160 None:intergenic 20.0%
!! AAATGAAAAAGGAATATTGA+TGG - chr3_1:38596140-38596159 Msa0357250:CDS 20.0%
!! AATGAAAAAGGAATATTGAT+GGG - chr3_1:38596141-38596160 Msa0357250:CDS 20.0%
!!! TGTTTTTTTGGTTATTTTTC+TGG - chr3_1:38596292-38596311 Msa0357250:intron 20.0%
!! TCTAACTATTTAATTGGTAT+CGG + chr3_1:38595490-38595509 None:intergenic 20.0%
!! TTAGCCAAATAAATAAAAAC+CGG - chr3_1:38596532-38596551 Msa0357250:intron 20.0%
!!! TTTTCCGGTTTTTATTTATT+TGG + chr3_1:38596539-38596558 None:intergenic 20.0%
!! AAATAAATAAAAACCGGAAA+AGG - chr3_1:38596538-38596557 Msa0357250:intron 20.0%
!! ATTGCATCAAATTTAAATCA+AGG - chr3_1:38596623-38596642 Msa0357250:CDS 20.0%
!! TTTGTTTATAATATCAGAGA+TGG - chr3_1:38596659-38596678 Msa0357250:CDS 20.0%
!! AATATAACGTAAAAAGTAGT+GGG + chr3_1:38596830-38596849 None:intergenic 20.0%
!! AAATATAACGTAAAAAGTAG+TGG + chr3_1:38596831-38596850 None:intergenic 20.0%
!!! CTTTTTACGTTATATTTGTT+AGG - chr3_1:38596834-38596853 Msa0357250:CDS 20.0%
!! AAGAATATATACAACTTGAA+GGG - chr3_1:38597112-38597131 Msa0357250:CDS 20.0%
!! AAGGGAATTATCATATATTT+AGG - chr3_1:38597130-38597149 Msa0357250:CDS 20.0%
!! TAAACTTTGTCTAGAAAAAT+GGG + chr3_1:38597191-38597210 None:intergenic 20.0%
!! ATAAACTTTGTCTAGAAAAA+TGG + chr3_1:38597192-38597211 None:intergenic 20.0%
! TTAAATATGGCAAACAAAGT+GGG - chr3_1:38591972-38591991 Msa0357250:three_prime_UTR 25.0%
!! TGAAAATTTTCTCTCTTCTT+TGG - chr3_1:38592002-38592021 Msa0357250:three_prime_UTR 25.0%
! ATTAATTTCATCCCTTGAAA+AGG + chr3_1:38592028-38592047 None:intergenic 25.0%
!!! TTTTCAAGGGATGAAATTAA+TGG - chr3_1:38592027-38592046 Msa0357250:three_prime_UTR 25.0%
! CCTAAAAAAAAATGACCAAA+GGG + chr3_1:38592188-38592207 None:intergenic 25.0%
!!! CCTTTGGTCATTTTTTTTTA+GGG - chr3_1:38592186-38592205 Msa0357250:three_prime_UTR 25.0%
!!! GTCATTTTTTTTTAGGGAAA+TGG - chr3_1:38592192-38592211 Msa0357250:three_prime_UTR 25.0%
! GTTAATACAGTTCAAATATG+TGG + chr3_1:38592346-38592365 None:intergenic 25.0%
!! TTTCTCACATGTTACAATTT+TGG - chr3_1:38592511-38592530 Msa0357250:three_prime_UTR 25.0%
!!! AAAGAATGTTCTAAGAACAT+TGG + chr3_1:38592891-38592910 None:intergenic 25.0%
! ATGGAATTAAAAAATGATGG+TGG + chr3_1:38593158-38593177 None:intergenic 25.0%
!! CTTTTCTTTTCTTAAGATAG+AGG + chr3_1:38593202-38593221 None:intergenic 25.0%
! TAAAGATTATTGTGACTTGA+GGG + chr3_1:38593854-38593873 None:intergenic 25.0%
! TTAAAGATTATTGTGACTTG+AGG + chr3_1:38593855-38593874 None:intergenic 25.0%
! AAACTATCAAAGGTTTATAG+TGG + chr3_1:38593931-38593950 None:intergenic 25.0%
! TATTAATACTTGTACACCTA+TGG + chr3_1:38594075-38594094 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG - chr3_1:38594281-38594300 Msa0357250:intron 25.0%
! GAAACTATTCAACTAAAATG+GGG + chr3_1:38594494-38594513 None:intergenic 25.0%
! TAAAAGATTCCACATATGTA+GGG + chr3_1:38594540-38594559 None:intergenic 25.0%
!! TACATATGTGGAATCTTTTA+GGG - chr3_1:38594540-38594559 Msa0357250:intron 25.0%
!!! TTATTGGTTTGATCCTTTTT+CGG + chr3_1:38594714-38594733 None:intergenic 25.0%
! TTTCTATCATCAAAATTCCT+AGG + chr3_1:38594795-38594814 None:intergenic 25.0%
!!! AGGAATTTTGATGATAGAAA+TGG - chr3_1:38594795-38594814 Msa0357250:intron 25.0%
!!! TAGAAATGGACTGAAAATTA+TGG - chr3_1:38594809-38594828 Msa0357250:intron 25.0%
! GTAATCAACCATTATCATAT+TGG - chr3_1:38594868-38594887 Msa0357250:intron 25.0%
! AATCAACCATTATCATATTG+GGG - chr3_1:38594870-38594889 Msa0357250:intron 25.0%
!! AACTTATTATGCTATTTGAG+TGG - chr3_1:38595054-38595073 Msa0357250:intron 25.0%
!! TTTAATGGATGAACATAGTT+AGG + chr3_1:38595159-38595178 None:intergenic 25.0%
!!! ATTTTTGATTTTGTCAACTG+AGG + chr3_1:38595195-38595214 None:intergenic 25.0%
! TACATGTGTTCATAAAACAT+TGG - chr3_1:38595257-38595276 Msa0357250:intron 25.0%
! GATACCAATTAAATAGTTAG+AGG + chr3_1:38596495-38596514 None:intergenic 25.0%
!! TTTTAATAAAACTGACGGAA+AGG + chr3_1:38595583-38595602 None:intergenic 25.0%
!! GAAAATTAGGGATTTAAGAT+TGG + chr3_1:38595783-38595802 None:intergenic 25.0%
!!! AATGGATTTCGATTTTGAAA+GGG - chr3_1:38595858-38595877 Msa0357250:intron 25.0%
!!! TTATACAGTTTTTGGAATAG+TGG - chr3_1:38595923-38595942 Msa0357250:intron 25.0%
!!! TATACAGTTTTTGGAATAGT+GGG - chr3_1:38595924-38595943 Msa0357250:intron 25.0%
!!! GTTTCTTGTTTTCGAAATTT+GGG - chr3_1:38595947-38595966 Msa0357250:intron 25.0%
!!! TTTTGTTTTTATGCAGCAAA+TGG - chr3_1:38596030-38596049 Msa0357250:intron 25.0%
!! ACTAATTTAGAATTGAGAAG+AGG - chr3_1:38596195-38596214 Msa0357250:intron 25.0%
! TTTGAATAAATCTGACAGAA+AGG - chr3_1:38596403-38596422 Msa0357250:intron 25.0%
! GATACCAATTAAATAGTTAG+AGG - chr3_1:38596495-38596514 Msa0357250:intron 25.0%
!! ATTTGGCTAAATTACCTTTT+TGG + chr3_1:38596522-38596541 None:intergenic 25.0%
! AAACTAAGTGATTATTGTAG+AGG - chr3_1:38596686-38596705 Msa0357250:CDS 25.0%
! AACTAAGTGATTATTGTAGA+GGG - chr3_1:38596687-38596706 Msa0357250:CDS 25.0%
!! TTTTTGAATCAACTCAAAGA+CGG - chr3_1:38596775-38596794 Msa0357250:CDS 25.0%
! ATATAACGTAAAAAGTAGTG+GGG + chr3_1:38596829-38596848 None:intergenic 25.0%
! ATGAGAATGAAATTTCCATT+TGG - chr3_1:38597014-38597033 Msa0357250:CDS 25.0%
! TCTTGTAAAAAACAAAGTCA+TGG + chr3_1:38597096-38597115 None:intergenic 25.0%
! CAAGAATATATACAACTTGA+AGG - chr3_1:38597111-38597130 Msa0357250:CDS 25.0%
! TGTGGAAAAGAATATCAAAT+TGG + chr3_1:38597156-38597175 None:intergenic 25.0%
!! AAAGTTTATGTGTACGTTTT+TGG - chr3_1:38597203-38597222 Msa0357250:CDS 25.0%
!! TTCTAAAATCATTCCCATCA+TGG - chr3_1:38591555-38591574 Msa0357250:three_prime_UTR 30.0%
! CATTTTCATTTGTCCATGAT+GGG + chr3_1:38591571-38591590 None:intergenic 30.0%
! TCATTTTCATTTGTCCATGA+TGG + chr3_1:38591572-38591591 None:intergenic 30.0%
! ATGTTTTCAAAGACAACACT+TGG + chr3_1:38591604-38591623 None:intergenic 30.0%
AAGGTGATTCTTAAACAACT+TGG + chr3_1:38591630-38591649 None:intergenic 30.0%
AGTTGTTTAAGAATCACCTT+TGG - chr3_1:38591630-38591649 Msa0357250:three_prime_UTR 30.0%
TTTAAGAATCACCTTTGGAT+TGG - chr3_1:38591635-38591654 Msa0357250:three_prime_UTR 30.0%
TACTTTGTCAAATTCACACA+AGG - chr3_1:38591660-38591679 Msa0357250:three_prime_UTR 30.0%
ATTTGAAAAAGTGAAGAAGG+AGG + chr3_1:38591803-38591822 None:intergenic 30.0%
!!! TCCTTCTTCACTTTTTCAAA+TGG - chr3_1:38591802-38591821 Msa0357250:three_prime_UTR 30.0%
CTTAAATATGGCAAACAAAG+TGG - chr3_1:38591971-38591990 Msa0357250:three_prime_UTR 30.0%
!! ATGAAATTAATGGTTGGTGA+TGG - chr3_1:38592037-38592056 Msa0357250:three_prime_UTR 30.0%
CAATTCATAACAGAATCAAC+AGG + chr3_1:38592094-38592113 None:intergenic 30.0%
!! CTGTTGATTCTGTTATGAAT+TGG - chr3_1:38592092-38592111 Msa0357250:three_prime_UTR 30.0%
!!! CCCTTTGGTCATTTTTTTTT+AGG - chr3_1:38592185-38592204 Msa0357250:three_prime_UTR 30.0%
CCCTAAAAAAAAATGACCAA+AGG + chr3_1:38592189-38592208 None:intergenic 30.0%
GATGGCTAATGAATATAACA+AGG - chr3_1:38592288-38592307 Msa0357250:three_prime_UTR 30.0%
! AATTTTTGCAGCTAACAGTA+TGG + chr3_1:38592450-38592469 None:intergenic 30.0%
!! ACATGTTACAATTTTGGTGT+TGG - chr3_1:38592517-38592536 Msa0357250:three_prime_UTR 30.0%
GAAAATTTACCTTGCTAGAA+GGG + chr3_1:38592624-38592643 None:intergenic 30.0%
AGAAAATTTACCTTGCTAGA+AGG + chr3_1:38592625-38592644 None:intergenic 30.0%
ATTTGAGTATCAACCAGATA+AGG - chr3_1:38592725-38592744 Msa0357250:intron 30.0%
! TGTTTAAATGATTTGCATCC+TGG - chr3_1:38593071-38593090 Msa0357250:intron 30.0%
!! TAAAAAATGATGGTGGAGAA+AGG + chr3_1:38593151-38593170 None:intergenic 30.0%
! TCTGACATTTGTGTTATTAG+AGG + chr3_1:38593229-38593248 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr3_1:38594307-38594326 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG - chr3_1:38593523-38593542 Msa0357250:intron 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr3_1:38593523-38593542 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG - chr3_1:38594307-38594326 Msa0357250:intron 30.0%
!!! AACCACTTTTTGACAACTTT+TGG + chr3_1:38594379-38594398 None:intergenic 30.0%
! CTCATTTCCTTTTGTATGAT+TGG - chr3_1:38594414-38594433 Msa0357250:intron 30.0%
CTAAAAGATTCCACATATGT+AGG + chr3_1:38594541-38594560 None:intergenic 30.0%
! CTACATATGTGGAATCTTTT+AGG - chr3_1:38594539-38594558 Msa0357250:intron 30.0%
! ACATATGTGGAATCTTTTAG+GGG - chr3_1:38594541-38594560 Msa0357250:intron 30.0%
TAATACTAAAAATGACGGTG+AGG - chr3_1:38594591-38594610 Msa0357250:intron 30.0%
! CTTTCTTTTAGTCACCAATA+TGG + chr3_1:38594766-38594785 None:intergenic 30.0%
CTAAAAGAAAGATATTGCCT+AGG - chr3_1:38594775-38594794 Msa0357250:intron 30.0%
ATAACTCCCCAATATGATAA+TGG + chr3_1:38594879-38594898 None:intergenic 30.0%
! TTAATTTGAATGACCAGATC+AGG - chr3_1:38594928-38594947 Msa0357250:intron 30.0%
! ATTTTCGGTAGGTATCTTTA+CGG - chr3_1:38594956-38594975 Msa0357250:intron 30.0%
AGAAATTATCAATGTGTTGG+TGG + chr3_1:38595116-38595135 None:intergenic 30.0%
GACAGAAATTATCAATGTGT+TGG + chr3_1:38595119-38595138 None:intergenic 30.0%
!!! TGTTTTGAAAACTCCATACT+TGG - chr3_1:38595291-38595310 Msa0357250:intron 30.0%
AAATAGTTAGAGGACCAAAA+AGG + chr3_1:38596505-38596524 None:intergenic 30.0%
TGGTCCTCTAACTATTTAAT+TGG - chr3_1:38595484-38595503 Msa0357250:intron 30.0%
!! CTATTTAATTGGTATCGGTT+TGG - chr3_1:38595495-38595514 Msa0357250:intron 30.0%
CAATCGAAATCCGAAAATTA+GGG + chr3_1:38595795-38595814 None:intergenic 30.0%
TCAATCGAAATCCGAAAATT+AGG + chr3_1:38595796-38595815 None:intergenic 30.0%
! AATTTTCGGATTTCGATTGA+AGG - chr3_1:38595796-38595815 Msa0357250:intron 30.0%
CGATTGAAGGAAAAACAATA+CGG - chr3_1:38595809-38595828 Msa0357250:intron 30.0%
!! CAATGGATTTCGATTTTGAA+AGG - chr3_1:38595857-38595876 Msa0357250:intron 30.0%
!! TCTGGGTTTTATACAGTTTT+TGG - chr3_1:38595915-38595934 Msa0357250:intron 30.0%
!!! ATACAGTTTTTGGAATAGTG+GGG - chr3_1:38595925-38595944 Msa0357250:intron 30.0%
!!! GGTTTCTTGTTTTCGAAATT+TGG - chr3_1:38595946-38595965 Msa0357250:intron 30.0%
! TTTGGGATTGTTACAAGTTA+TGG - chr3_1:38595964-38595983 Msa0357250:intron 30.0%
! TGAATGTTGAAACGATCTTT+TGG - chr3_1:38596080-38596099 Msa0357250:intron 30.0%
AAGAGTAAGCCAAATGAAAA+AGG - chr3_1:38596129-38596148 Msa0357250:CDS 30.0%
! GAATATTGATGGGTATGATA+GGG - chr3_1:38596151-38596170 Msa0357250:CDS 30.0%
!! ATGGTGGAATGAATGATTTT+AGG - chr3_1:38596227-38596246 Msa0357250:intron 30.0%
!! TAGGTTTGAGTTGATAATGA+TGG - chr3_1:38596246-38596265 Msa0357250:intron 30.0%
!! CTATTTAATTGGTATCGGTT+TGG + chr3_1:38595495-38595514 None:intergenic 30.0%
TGGTCCTCTAACTATTTAAT+TGG + chr3_1:38595484-38595503 None:intergenic 30.0%
AAATAGTTAGAGGACCAAAA+AGG - chr3_1:38596505-38596524 Msa0357250:intron 30.0%
TATACAGTCCAACAATTTCA+AGG + chr3_1:38596565-38596584 None:intergenic 30.0%
ACTAAGTGATTATTGTAGAG+GGG - chr3_1:38596688-38596707 Msa0357250:CDS 30.0%
TTGGATAACAACAAATCAGA+AGG - chr3_1:38596715-38596734 Msa0357250:CDS 30.0%
TGGATAACAACAAATCAGAA+GGG - chr3_1:38596716-38596735 Msa0357250:CDS 30.0%
GATCAATAGGAAATACCATA+GGG - chr3_1:38596940-38596959 Msa0357250:CDS 30.0%
GTAAAAAACAAAGTCATGGT+AGG + chr3_1:38597092-38597111 None:intergenic 30.0%
! TGATATTCTTTTCCACATTG+TGG - chr3_1:38597159-38597178 Msa0357250:CDS 30.0%
TGAGAAGCAATTTACATTGA+TGG + chr3_1:38597232-38597251 None:intergenic 30.0%
GACAAAGTAAACCAATCCAA+AGG + chr3_1:38591649-38591668 None:intergenic 35.0%
AATTCACACAAGGATGTCTA+TGG - chr3_1:38591670-38591689 Msa0357250:three_prime_UTR 35.0%
TGATCATGTTGAAGAGATTG+AGG - chr3_1:38591718-38591737 Msa0357250:three_prime_UTR 35.0%
TGAGGAGAAGTTATCATTGT+TGG - chr3_1:38591736-38591755 Msa0357250:three_prime_UTR 35.0%
GCCATTTGAAAAAGTGAAGA+AGG + chr3_1:38591806-38591825 None:intergenic 35.0%
!!! TCTTCACTTTTTCAAATGGC+TGG - chr3_1:38591806-38591825 Msa0357250:three_prime_UTR 35.0%
!! GTGTGTGAGTGATTACTTTT+GGG - chr3_1:38591853-38591872 Msa0357250:three_prime_UTR 35.0%
AGAGACACATGAAGAAGAAA+TGG - chr3_1:38591876-38591895 Msa0357250:three_prime_UTR 35.0%
GAGACACATGAAGAAGAAAT+GGG - chr3_1:38591877-38591896 Msa0357250:three_prime_UTR 35.0%
AGACACATGAAGAAGAAATG+GGG - chr3_1:38591878-38591897 Msa0357250:three_prime_UTR 35.0%
TTATTGGTCAAGCTGCTTAT+AGG - chr3_1:38591906-38591925 Msa0357250:three_prime_UTR 35.0%
TATTGGTCAAGCTGCTTATA+GGG - chr3_1:38591907-38591926 Msa0357250:three_prime_UTR 35.0%
! ATGGCATGTTGCTTCAAAAA+AGG - chr3_1:38591937-38591956 Msa0357250:three_prime_UTR 35.0%
! TGGCATGTTGCTTCAAAAAA+GGG - chr3_1:38591938-38591957 Msa0357250:three_prime_UTR 35.0%
!! TTGCTTCAAAAAAGGGTGTT+GGG - chr3_1:38591945-38591964 Msa0357250:three_prime_UTR 35.0%
CAAGGGATGAAATTAATGGT+TGG - chr3_1:38592031-38592050 Msa0357250:three_prime_UTR 35.0%
GAAATGATAGCTGCAATCAT+AGG - chr3_1:38592059-38592078 Msa0357250:three_prime_UTR 35.0%
!! TGGTATCTTGCTATTGAAAC+TGG - chr3_1:38592112-38592131 Msa0357250:three_prime_UTR 35.0%
GGTTAACGCAATTTAGTAGA+TGG - chr3_1:38592270-38592289 Msa0357250:three_prime_UTR 35.0%
!!! TACAATTTTGGTGTTGGTGT+TGG - chr3_1:38592523-38592542 Msa0357250:three_prime_UTR 35.0%
!! TGCTTAAGTGTGTCATTTCA+TGG - chr3_1:38592664-38592683 Msa0357250:exon 35.0%
TGGTTAACAAGATCCTTATC+TGG + chr3_1:38592741-38592760 None:intergenic 35.0%
ATTTCTTAGCCCATAATTCC+GGG + chr3_1:38592768-38592787 None:intergenic 35.0%
GATTTCTTAGCCCATAATTC+CGG + chr3_1:38592769-38592788 None:intergenic 35.0%
TGTTATAGGTATCCTTCACA+TGG - chr3_1:38592957-38592976 Msa0357250:intron 35.0%
TCAGAGATATGAAGATCATG+TGG + chr3_1:38593050-38593069 None:intergenic 35.0%
AGTCAAGATTCCATGTTACA+CGG + chr3_1:38593288-38593307 None:intergenic 35.0%
AGATAGCACGTGACAAAATT+GGG - chr3_1:38593339-38593358 Msa0357250:intron 35.0%
!!! TTTTACACAATGCTGTTTCC+AGG - chr3_1:38593769-38593788 Msa0357250:intron 35.0%
GACCTCTAATATTGATCCAA+CGG - chr3_1:38593905-38593924 Msa0357250:intron 35.0%
CACACATAAATAAGAAGTCG+AGG - chr3_1:38593990-38594009 Msa0357250:intron 35.0%
! TTTATCGGTTGAATCACCAT+AGG - chr3_1:38594056-38594075 Msa0357250:intron 35.0%
GACAAAAGTAGCCATTCATA+AGG + chr3_1:38594107-38594126 None:intergenic 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG - chr3_1:38594374-38594393 Msa0357250:intron 35.0%
!! TTTTTCGGATCCTATGTTAG+AGG + chr3_1:38594699-38594718 None:intergenic 35.0%
TCTAACATAGGATCCGAAAA+AGG - chr3_1:38594698-38594717 Msa0357250:intron 35.0%
ATGACATACTGTCCATGAAA+TGG + chr3_1:38595088-38595107 None:intergenic 35.0%
TTGAAAACTCCATACTTGGT+TGG - chr3_1:38595295-38595314 Msa0357250:intron 35.0%
ATGTTTATGCCAACCAAGTA+TGG + chr3_1:38595307-38595326 None:intergenic 35.0%
AGTAACAGTGACAAAGTTAG+AGG + chr3_1:38595551-38595570 None:intergenic 35.0%
! ATTCCCTAATTTTCGGTTTC+TGG - chr3_1:38595897-38595916 Msa0357250:intron 35.0%
! TTCCCTAATTTTCGGTTTCT+GGG - chr3_1:38595898-38595917 Msa0357250:intron 35.0%
AACCCAGAAACCGAAAATTA+GGG + chr3_1:38595903-38595922 None:intergenic 35.0%
AAACCCAGAAACCGAAAATT+AGG + chr3_1:38595904-38595923 None:intergenic 35.0%
!!! TTGAAACGATCTTTTGGAGT+TGG - chr3_1:38596086-38596105 Msa0357250:intron 35.0%
TGGAAAGGTTTGGAAGAAAA+TGG - chr3_1:38596106-38596125 Msa0357250:intron 35.0%
! GGAATATTGATGGGTATGAT+AGG - chr3_1:38596150-38596169 Msa0357250:CDS 35.0%
TGAGAAGAGGAACAAGATTA+TGG - chr3_1:38596208-38596227 Msa0357250:intron 35.0%
!! GTTTGAGTTGATAATGATGG+AGG - chr3_1:38596249-38596268 Msa0357250:intron 35.0%
! ACAATTTCAAGGACCTTTTC+CGG + chr3_1:38596554-38596573 None:intergenic 35.0%
GAAAAGGTCCTTGAAATTGT+TGG - chr3_1:38596554-38596573 Msa0357250:intron 35.0%
CTAAGTGATTATTGTAGAGG+GGG - chr3_1:38596689-38596708 Msa0357250:CDS 35.0%
TAAGTGATTATTGTAGAGGG+GGG - chr3_1:38596690-38596709 Msa0357250:CDS 35.0%
!! ATTTTTGTTGACTGCAGACT+CGG - chr3_1:38596865-38596884 Msa0357250:CDS 35.0%
GGATCAATAGGAAATACCAT+AGG - chr3_1:38596939-38596958 Msa0357250:CDS 35.0%
!!! AATGAGGCTGATGGATTTTA+TGG - chr3_1:38596971-38596990 Msa0357250:CDS 35.0%
!!! ATGAGGCTGATGGATTTTAT+GGG - chr3_1:38596972-38596991 Msa0357250:CDS 35.0%
TACTAATCCAAGACTTCAGA+TGG + chr3_1:38597052-38597071 None:intergenic 35.0%
AAAAACAAAGTCATGGTAGG+TGG + chr3_1:38597089-38597108 None:intergenic 35.0%
ATGCATTCCAAAGTTAGCTC+TGG + chr3_1:38591767-38591786 None:intergenic 40.0%
TGGTGTTTGCCATTCATTGA+GGG - chr3_1:38591826-38591845 Msa0357250:three_prime_UTR 40.0%
! GGTGTGTGAGTGATTACTTT+TGG - chr3_1:38591852-38591871 Msa0357250:three_prime_UTR 40.0%
AAGAAATGGGGTGGAGTTAT+TGG - chr3_1:38591890-38591909 Msa0357250:three_prime_UTR 40.0%
CTGCTTATAGGGAATGGAAA+TGG - chr3_1:38591918-38591937 Msa0357250:three_prime_UTR 40.0%
! GTTGCTTCAAAAAAGGGTGT+TGG - chr3_1:38591944-38591963 Msa0357250:three_prime_UTR 40.0%
! GGTGTTGGGAGTCTTAAATA+TGG - chr3_1:38591959-38591978 Msa0357250:three_prime_UTR 40.0%
!! ATGGCAAACAAAGTGGGTTA+TGG - chr3_1:38591978-38591997 Msa0357250:three_prime_UTR 40.0%
!! TCTCTTCTTTGGCCTTTTCA+AGG - chr3_1:38592013-38592032 Msa0357250:three_prime_UTR 40.0%
!! CTCTTCTTTGGCCTTTTCAA+GGG - chr3_1:38592014-38592033 Msa0357250:three_prime_UTR 40.0%
! CTATAACCGTGAGGTATCTA+TGG - chr3_1:38592159-38592178 Msa0357250:three_prime_UTR 40.0%
AGGTATCTATGGAAACCCTT+TGG - chr3_1:38592170-38592189 Msa0357250:three_prime_UTR 40.0%
!! TTGGTGTTGGTGTTGTAGAA+TGG - chr3_1:38592536-38592555 Msa0357250:three_prime_UTR 40.0%
GTGTTGTAGAATGGTCATCT+TGG - chr3_1:38592545-38592564 Msa0357250:three_prime_UTR 40.0%
CAGCATCATAGCAAGATAAC+AGG + chr3_1:38592574-38592593 None:intergenic 40.0%
! TTACCTTGCTAGAAGGGTAT+TGG + chr3_1:38592618-38592637 None:intergenic 40.0%
GATCTTGTTAACCAATGTCC+CGG - chr3_1:38592747-38592766 Msa0357250:intron 40.0%
TAACCAATGTCCCGGAATTA+TGG - chr3_1:38592755-38592774 Msa0357250:intron 40.0%
AACCAATGTCCCGGAATTAT+GGG - chr3_1:38592756-38592775 Msa0357250:intron 40.0%
TACAGAGTGTGGAATTCCAT+GGG - chr3_1:38592992-38593011 Msa0357250:intron 40.0%
TCATGTGGAGAGATATCAAC+AGG + chr3_1:38593035-38593054 None:intergenic 40.0%
TGAATCTCTATGTGATTGCC+AGG + chr3_1:38593092-38593111 None:intergenic 40.0%
GCAATCACATAGAGATTCAG+TGG - chr3_1:38593093-38593112 Msa0357250:intron 40.0%
ATCACATAGAGATTCAGTGG+AGG - chr3_1:38593096-38593115 Msa0357250:intron 40.0%
GGAGAAAGGAACAAACCATA+AGG + chr3_1:38593137-38593156 None:intergenic 40.0%
ATTCCATGTTACACGGATCT+GGG + chr3_1:38593281-38593300 None:intergenic 40.0%
! CAATTTTGTCACGTGCTATC+TGG + chr3_1:38593340-38593359 None:intergenic 40.0%
CAGATAGCACGTGACAAAAT+TGG - chr3_1:38593338-38593357 Msa0357250:intron 40.0%
GATAGCACGTGACAAAATTG+GGG - chr3_1:38593340-38593359 Msa0357250:intron 40.0%
ACAATGGAGAGAGAAAAAGG+AGG + chr3_1:38594310-38594329 None:intergenic 40.0%
CGTTCAATACACCAAATGGT+GGG + chr3_1:38593683-38593702 None:intergenic 40.0%
! CAGCCTTACTCTGTTTTACA+GGG - chr3_1:38593703-38593722 Msa0357250:intron 40.0%
CTTCCCTGTAAAACAGAGTA+AGG + chr3_1:38593709-38593728 None:intergenic 40.0%
! CTTACTCTGTTTTACAGGGA+AGG - chr3_1:38593707-38593726 Msa0357250:intron 40.0%
CGTTCAATACACCAAATGGT+GGG + chr3_1:38593683-38593702 None:intergenic 40.0%
ACTGCGTTCAATACACCAAA+TGG + chr3_1:38593740-38593759 None:intergenic 40.0%
GTTGTTGTCCTGTGATTGAA+AGG + chr3_1:38593809-38593828 None:intergenic 40.0%
ACTCACCACTATTATGACAG+CGG + chr3_1:38594192-38594211 None:intergenic 40.0%
AGATTCCACATATGTAGGGA+GGG + chr3_1:38594536-38594555 None:intergenic 40.0%
AAGATTCCACATATGTAGGG+AGG + chr3_1:38594537-38594556 None:intergenic 40.0%
TACTGAAGCTCCTCTAACAT+AGG - chr3_1:38594686-38594705 Msa0357250:intron 40.0%
! CCAGATCAGGTCACAATTTT+CGG - chr3_1:38594941-38594960 Msa0357250:intron 40.0%
! ATCAGGTCACAATTTTCGGT+AGG - chr3_1:38594945-38594964 Msa0357250:intron 40.0%
! GAAAGCACGACATCAATTGA+AGG - chr3_1:38595752-38595771 Msa0357250:intron 40.0%
!!! ACGATCTTTTGGAGTTGGAA+AGG - chr3_1:38596091-38596110 Msa0357250:intron 40.0%
!!! CTTTTGGAGTTGGAAAGGTT+TGG - chr3_1:38596096-38596115 Msa0357250:intron 40.0%
GTATGATAGGGAAATTGCAG+TGG - chr3_1:38596163-38596182 Msa0357250:CDS 40.0%
GAAGAGGAACAAGATTATGG+TGG - chr3_1:38596211-38596230 Msa0357250:intron 40.0%
GAAAGGACGAAAAGCAGTAA+CGG - chr3_1:38596420-38596439 Msa0357250:intron 40.0%
AGTAACGGTGACAAAGTTAG+AGG - chr3_1:38596435-38596454 Msa0357250:intron 40.0%
ACGGAGTTATTTAGTGCAGA+TGG - chr3_1:38596794-38596813 Msa0357250:intron 40.0%
CGGAGTTATTTAGTGCAGAT+GGG - chr3_1:38596795-38596814 Msa0357250:intron 40.0%
GGAGTTATTTAGTGCAGATG+GGG - chr3_1:38596796-38596815 Msa0357250:intron 40.0%
GAGTTATTTAGTGCAGATGG+GGG - chr3_1:38596797-38596816 Msa0357250:intron 40.0%
AGGAAATACCATAGGGAAGA+AGG - chr3_1:38596947-38596966 Msa0357250:CDS 40.0%
!!! TGAGGCTGATGGATTTTATG+GGG - chr3_1:38596973-38596992 Msa0357250:CDS 40.0%
TTTCCATTTGGAAACGCATG+TGG - chr3_1:38597026-38597045 Msa0357250:CDS 40.0%
AATGGGTGATAACCACAATG+TGG + chr3_1:38597174-38597193 None:intergenic 40.0%
ACACAAGGATGTCTATGGTG+AGG - chr3_1:38591675-38591694 Msa0357250:three_prime_UTR 45.0%
CTGGTGTTTGCCATTCATTG+AGG - chr3_1:38591825-38591844 Msa0357250:three_prime_UTR 45.0%
TTTGCCATTCATTGAGGGAG+AGG - chr3_1:38591831-38591850 Msa0357250:three_prime_UTR 45.0%
CACATGAAGAAGAAATGGGG+TGG - chr3_1:38591881-38591900 Msa0357250:three_prime_UTR 45.0%
GTCAAGCTGCTTATAGGGAA+TGG - chr3_1:38591912-38591931 Msa0357250:three_prime_UTR 45.0%
CTATTGAAACTGGCAGCTTC+TGG - chr3_1:38592122-38592141 Msa0357250:three_prime_UTR 45.0%
TCACGGTTATAGACTTGAGC+AGG + chr3_1:38592151-38592170 None:intergenic 45.0%
TGCTCAAGTCTATAACCGTG+AGG - chr3_1:38592150-38592169 Msa0357250:three_prime_UTR 45.0%
GGGTTTCCATAGATACCTCA+CGG + chr3_1:38592168-38592187 None:intergenic 45.0%
TTGCAGCTAACAGTATGGTG+TGG + chr3_1:38592445-38592464 None:intergenic 45.0%
GAACCAATACCCTTCTAGCA+AGG - chr3_1:38592612-38592631 Msa0357250:three_prime_UTR 45.0%
GCTTCTCTTCTTCCATGTGA+AGG + chr3_1:38592972-38592991 None:intergenic 45.0%
AGAAGAGAAGCTACAGAGTG+TGG - chr3_1:38592981-38593000 Msa0357250:intron 45.0%
CTACAGAGTGTGGAATTCCA+TGG - chr3_1:38592991-38593010 Msa0357250:intron 45.0%
AGTGTGGAATTCCATGGGAA+AGG - chr3_1:38592997-38593016 Msa0357250:intron 45.0%
TGTGGAGAGATATCAACAGG+AGG + chr3_1:38593032-38593051 None:intergenic 45.0%
TTCCATGTTACACGGATCTG+GGG + chr3_1:38593280-38593299 None:intergenic 45.0%
GATTCCATGTTACACGGATC+TGG + chr3_1:38593282-38593301 None:intergenic 45.0%
! TTTTGTCACGTGCTATCTGG+AGG + chr3_1:38593337-38593356 None:intergenic 45.0%
GCGTTCAATACACCAAATGG+TGG + chr3_1:38593684-38593703 None:intergenic 45.0%
GCTGCGTTCAATACACCAAA+TGG + chr3_1:38593687-38593706 None:intergenic 45.0%
! GCAGCCTTACTCTGTTTTAC+AGG - chr3_1:38593702-38593721 Msa0357250:intron 45.0%
GCGTTCAATACACCAAATGG+TGG + chr3_1:38593684-38593703 None:intergenic 45.0%
TCCTGTGATTGAAAGGTCAC+GGG + chr3_1:38593802-38593821 None:intergenic 45.0%
GTCCTGTGATTGAAAGGTCA+CGG + chr3_1:38593803-38593822 None:intergenic 45.0%
CAACTTTACCAGTTGCGCTA+AGG - chr3_1:38593825-38593844 Msa0357250:intron 45.0%
GGCCGTTGGATCAATATTAG+AGG + chr3_1:38593910-38593929 None:intergenic 45.0%
CAAAGGTTTATAGTGGCCGT+TGG + chr3_1:38593924-38593943 None:intergenic 45.0%
!!! TGAATGGCTACTTTTGTCGC+AGG - chr3_1:38594109-38594128 Msa0357250:intron 45.0%
CATTGCCGCTGTCATAATAG+TGG - chr3_1:38594184-38594203 Msa0357250:intron 45.0%
!! TATGTAGGGAGGGTATTGCA+CGG + chr3_1:38594526-38594545 None:intergenic 45.0%
CAATACCCTCCCTACATATG+TGG - chr3_1:38594528-38594547 Msa0357250:intron 45.0%
CCGAAAATTGTGACCTGATC+TGG + chr3_1:38594944-38594963 None:intergenic 45.0%
! GTGGTCTTGAAGCCATTTCA+TGG - chr3_1:38595073-38595092 Msa0357250:intron 45.0%
! ATTATTGTAGAGGGGGGCAT+TGG - chr3_1:38596696-38596715 Msa0357250:CDS 45.0%
GAGTTCAACCATTACACTCC+TGG - chr3_1:38596896-38596915 Msa0357250:CDS 45.0%
! ATCTTGAGCCAGGAGTGTAA+TGG + chr3_1:38596907-38596926 None:intergenic 45.0%
ATTACACTCCTGGCTCAAGA+TGG - chr3_1:38596906-38596925 Msa0357250:CDS 45.0%
GGAGACAGACTAGGATCAAT+AGG - chr3_1:38596927-38596946 Msa0357250:CDS 45.0%
CCTCATTTCCTTCTTCCCTA+TGG + chr3_1:38596958-38596977 None:intergenic 45.0%
CCATAGGGAAGAAGGAAATG+AGG - chr3_1:38596955-38596974 Msa0357250:CDS 45.0%
GAAGAAGGAAATGAGGCTGA+TGG - chr3_1:38596962-38596981 Msa0357250:CDS 45.0%
!!! GAGGCTGATGGATTTTATGG+GGG - chr3_1:38596974-38596993 Msa0357250:CDS 45.0%
!! ATTTATATAAATATATATAG+AGG - chr3_1:38594652-38594671 Msa0357250:intron 5.0%
!! ATAGTTTATATAAATATTAT+TGG + chr3_1:38594730-38594749 None:intergenic 5.0%
!!! ATATTTATAATTTTTTTTAG+TGG + chr3_1:38595014-38595033 None:intergenic 5.0%
GGACTTGCCAGAGCTAACTT+TGG - chr3_1:38591757-38591776 Msa0357250:three_prime_UTR 50.0%
CACACCTCTCCCTCAATGAA+TGG + chr3_1:38591838-38591857 None:intergenic 50.0%
AGCCCATAATTCCGGGACAT+TGG + chr3_1:38592761-38592780 None:intergenic 50.0%
TTCCCCAGATCCGTGTAACA+TGG - chr3_1:38593275-38593294 Msa0357250:intron 50.0%
ACCCGTGACCTTTCAATCAC+AGG - chr3_1:38593798-38593817 Msa0357250:intron 50.0%
!!! TGGCTACTTTTGTCGCAGGT+TGG - chr3_1:38594113-38594132 Msa0357250:intron 50.0%
!! CTACTTTTGTCGCAGGTTGG+TGG - chr3_1:38594116-38594135 Msa0357250:intron 50.0%
!! TTTGTCGCAGGTTGGTGGTA+TGG - chr3_1:38594121-38594140 Msa0357250:intron 50.0%
!! AGGTTGGTGGTATGGTGTTG+TGG - chr3_1:38594129-38594148 Msa0357250:intron 50.0%
!! GGTTGGTGGTATGGTGTTGT+GGG - chr3_1:38594130-38594149 Msa0357250:intron 50.0%
!! GTATGGTGTTGTGGGTCACT+TGG - chr3_1:38594138-38594157 Msa0357250:intron 50.0%
!! ATGTAGGGAGGGTATTGCAC+GGG + chr3_1:38594525-38594544 None:intergenic 50.0%
CAACAGCAACACGACAGCAA+TGG - chr3_1:38595840-38595859 Msa0357250:intron 50.0%
GCTCAAGATGGAGACAGACT+AGG - chr3_1:38596918-38596937 Msa0357250:CDS 50.0%
TGGCCACATGCGTTTCCAAA+TGG + chr3_1:38597032-38597051 None:intergenic 50.0%
! CATGTGGCCATCTGAAGTCT+TGG - chr3_1:38597042-38597061 Msa0357250:intron 50.0%
! GGTGCTCTTAGCCTTTCCCA+TGG + chr3_1:38593011-38593030 None:intergenic 55.0%
ACCTGTTGCACTAGAGCTCC+CGG - chr3_1:38593634-38593653 Msa0357250:intron 55.0%
TTCCCGGACACTGCATATCC+GGG + chr3_1:38593655-38593674 None:intergenic 55.0%
CTTCCCGGACACTGCATATC+CGG + chr3_1:38593656-38593675 None:intergenic 55.0%
! CAAATGGTGGGACTCCTTCC+CGG + chr3_1:38593671-38593690 None:intergenic 55.0%
AGGGAAGGAGTCCCACCATT+TGG - chr3_1:38593722-38593741 Msa0357250:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr3_1:38593790-38593809 None:intergenic 55.0%
GAGGGTAACCTTAGCGCAAC+TGG + chr3_1:38593836-38593855 None:intergenic 55.0%
GTCTGTCTCCATCTTGAGCC+AGG + chr3_1:38596917-38596936 None:intergenic 55.0%
! TCCGGGAGCTCTAGTGCAAC+AGG + chr3_1:38593638-38593657 None:intergenic 60.0%
GCTCCCGGATATGCAGTGTC+CGG - chr3_1:38593649-38593668 Msa0357250:intron 60.0%
CTCCCGGATATGCAGTGTCC+GGG - chr3_1:38593650-38593669 Msa0357250:intron 60.0%
CGGATATGCAGTGTCCGGGA+AGG - chr3_1:38593654-38593673 Msa0357250:intron 60.0%
CGGGAAGGAGTCCCACCATT+TGG - chr3_1:38593669-38593688 Msa0357250:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 38591488 38597271 38591488 ID=Msa0357250;Name=Msa0357250
chr3_1 mRNA 38591488 38597271 38591488 ID=Msa0357250-mRNA-1;Parent=Msa0357250;Name=Msa0357250-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0.33|1|0.2|0.33|6|1194|292
chr3_1 exon 38591488 38592713 38591488 ID=Msa0357250-mRNA-1:exon:6969;Parent=Msa0357250-mRNA-1
chr3_1 exon 38595619 38595740 38595619 ID=Msa0357250-mRNA-1:exon:6968;Parent=Msa0357250-mRNA-1
chr3_1 exon 38596126 38596205 38596126 ID=Msa0357250-mRNA-1:exon:6967;Parent=Msa0357250-mRNA-1
chr3_1 exon 38596603 38596800 38596603 ID=Msa0357250-mRNA-1:exon:6966;Parent=Msa0357250-mRNA-1
chr3_1 exon 38596816 38597058 38596816 ID=Msa0357250-mRNA-1:exon:6965;Parent=Msa0357250-mRNA-1
chr3_1 exon 38597068 38597271 38597068 ID=Msa0357250-mRNA-1:exon:6964;Parent=Msa0357250-mRNA-1
chr3_1 CDS 38597068 38597271 38597068 ID=Msa0357250-mRNA-1:cds;Parent=Msa0357250-mRNA-1
chr3_1 CDS 38596816 38597058 38596816 ID=Msa0357250-mRNA-1:cds;Parent=Msa0357250-mRNA-1
chr3_1 CDS 38596603 38596800 38596603 ID=Msa0357250-mRNA-1:cds;Parent=Msa0357250-mRNA-1
chr3_1 CDS 38596126 38596205 38596126 ID=Msa0357250-mRNA-1:cds;Parent=Msa0357250-mRNA-1
chr3_1 CDS 38595619 38595740 38595619 ID=Msa0357250-mRNA-1:cds;Parent=Msa0357250-mRNA-1
chr3_1 CDS 38592682 38592713 38592682 ID=Msa0357250-mRNA-1:cds;Parent=Msa0357250-mRNA-1
chr3_1 three_prime_UTR 38591488 38592681 38591488 ID=Msa0357250-mRNA-1:three_prime_utr;Parent=Msa0357250-mRNA-1
Gene Sequence

>Msa0357250

ATGTTACTTTACTTCATAATTACTTGCATCTCTTTTTTCTTCTTTTTAAACTTAAACTCTCTTTCTTTTCTAAAATCATTCCCATCATGGACAAATGAAAATGAAATGAAGCACCAAGTGTTGTCTTTGAAAACATTCTCCAAGTTGTTTAAGAATCACCTTTGGATTGGTTTACTTTGTCAAATTCACACAAGGATGTCTATGAGTCTTAGTTCAAGAGTTGATCATGTTGAAGAGATTGAGGAGAAGTTATCATTGTTGGACTTGCCAGAGCTAACTTTGGAATGCATACTTGAAAAGTTACCTCCTTCTTCACTTTTTCAAATGGCTGGTGTTTGCCATTCATTGAGGGAGAGGTGTGTGAGTGATTACTTTTGGGAGAGACACATGAAGAAGAAATGGGGTGGAGTTATTGGTCAAGCTGCTTATAGGGAATGGAAATGGCATGGTGTTGGGAGTCTTAAATATGGCAAACAAAGTGGGTTATGGATGAAAATTTTCTCTCTTCTTTGGCCTTTTCAAGGGATGAAATTAATGGTTGGTGATGGAAATGATAGCTGCAATCATAGGAATTCATTGCCTGTTGATTCTGTTATGAATTGGTATCTTGCTATTGAAACTGGCAGCTTCTGGTTTCCTGCTCAAAATGGTCATCTTGGTTTCCTGTTATCTTGCTATGATGCTGAACTTAGCTATGATTCGCGAACCAATACCCTTCTAGCAAGGCTAAGAGCACCTCCTGTTGATATCTCTCCACATGATCTTCATATCTCTGATTGTTTAAATGATTTGCATCCTGGCAATCACATAGAGATTCAGTGGAGGAGAAAAAAAGAATTTCCTTATGCAAATGGAGAACGAGAACAAATTGAGAATTAA
Protein sequence

>Msa0357250

MLLYFIITCISFFFFLNLNSLSFLKSFPSWTNENEMKHQVLSLKTFSKLFKNHLWIGLLCQIHTRMSMSLSSRVDHVEEIEEKLSLLDLPELTLECILEKLPPSSLFQMAGVCHSLRERCVSDYFWERHMKKKWGGVIGQAAYREWKWHGVGSLKYGKQSGLWMKIFSLLWPFQGMKLMVGDGNDSCNHRNSLPVDSVMNWYLAIETGSFWFPAQNGHLGFLLSCYDAELSYDSRTNTLLARLRAPPVDISPHDLHISDCLNDLHPGNHIEIQWRRKKEFPYANGEREQIEN*