Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404760 | XP_013461730.1 | 89.067 | 375 | 25 | 3 | 1 | 362 | 1 | 372 | 0.0 | 676 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404760 | sp|Q9FMH5|CCA31_ARATH | 46.779 | 357 | 163 | 6 | 3 | 348 | 12 | 352 | 8.31e-109 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404760 | A0A072VC73 | 89.067 | 375 | 25 | 3 | 1 | 362 | 1 | 372 | 0.0 | 676 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0140210 | Msa0404760 | 0.833194 | 6.135506e-56 | -8.615850e-47 |
| Msa0373170 | Msa0404760 | 0.815974 | 7.020160e-52 | -8.615850e-47 |
| Msa0404760 | Msa0421750 | 0.801786 | 7.637963e-49 | -8.615850e-47 |
| Msa0404760 | Msa0467690 | 0.817782 | 2.758894e-52 | -8.615850e-47 |
| Msa0404760 | Msa0514020 | 0.810937 | 8.988950e-51 | -8.615850e-47 |
| Msa0404760 | Msa0561560 | 0.804914 | 1.718344e-49 | -8.615850e-47 |
| Msa0404760 | Msa0615630 | 0.803252 | 3.809115e-49 | -8.615850e-47 |
| Msa0404760 | Msa0647050 | 0.803770 | 2.974605e-49 | -8.615850e-47 |
| Msa0404760 | Msa1127280 | 0.806312 | 8.744850e-50 | -8.615850e-47 |
| Msa0404760 | Msa1165480 | 0.808423 | 3.120379e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404760 | MtrunA17_Chr3g0134411 | 89.067 | 375 | 25 | 3 | 1 | 362 | 1 | 372 | 0.0 | 676 |
| Msa0404760 | MtrunA17_Chr3g0134401 | 74.862 | 362 | 56 | 5 | 1 | 349 | 1 | 340 | 0.0 | 533 |
| Msa0404760 | MtrunA17_Chr3g0134421 | 65.000 | 360 | 107 | 4 | 1 | 349 | 1 | 352 | 7.16e-155 | 439 |
| Msa0404760 | MtrunA17_Chr1g0152871 | 50.000 | 342 | 140 | 6 | 24 | 347 | 30 | 358 | 9.40e-108 | 320 |
| Msa0404760 | MtrunA17_Chr3g0134441 | 49.304 | 359 | 138 | 7 | 1 | 346 | 2 | 329 | 4.03e-100 | 299 |
| Msa0404760 | MtrunA17_Chr3g0134431 | 48.571 | 245 | 94 | 4 | 96 | 329 | 13 | 236 | 3.49e-67 | 212 |
| Msa0404760 | MtrunA17_Chr1g0148681 | 37.461 | 323 | 167 | 5 | 46 | 339 | 96 | 412 | 3.91e-63 | 207 |
| Msa0404760 | MtrunA17_Chr3g0125051 | 40.809 | 272 | 148 | 2 | 87 | 347 | 235 | 504 | 5.32e-63 | 209 |
| Msa0404760 | MtrunA17_Chr3g0138431 | 40.074 | 272 | 150 | 2 | 79 | 339 | 200 | 469 | 7.19e-62 | 205 |
| Msa0404760 | MtrunA17_Chr3g0125041 | 38.944 | 303 | 158 | 4 | 57 | 346 | 220 | 508 | 1.79e-61 | 205 |
| Msa0404760 | MtrunA17_Chr2g0332171 | 39.860 | 286 | 156 | 4 | 74 | 346 | 203 | 485 | 3.54e-61 | 204 |
| Msa0404760 | MtrunA17_Chr2g0332181 | 38.351 | 279 | 158 | 3 | 79 | 346 | 154 | 429 | 9.34e-59 | 196 |
| Msa0404760 | MtrunA17_Chr8g0370671 | 31.801 | 261 | 158 | 6 | 84 | 333 | 168 | 419 | 7.90e-35 | 132 |
| Msa0404760 | MtrunA17_Chr7g0255771 | 32.028 | 281 | 172 | 9 | 72 | 338 | 177 | 452 | 1.40e-33 | 129 |
| Msa0404760 | MtrunA17_Chr5g0406741 | 32.031 | 256 | 154 | 5 | 89 | 333 | 169 | 415 | 1.03e-32 | 126 |
| Msa0404760 | MtrunA17_Chr5g0441371 | 30.315 | 254 | 156 | 6 | 83 | 324 | 156 | 400 | 1.65e-30 | 120 |
| Msa0404760 | MtrunA17_Chr8g0357001 | 33.884 | 242 | 125 | 10 | 64 | 293 | 471 | 689 | 1.18e-27 | 114 |
| Msa0404760 | MtrunA17_Chr3g0102851 | 30.172 | 232 | 130 | 8 | 127 | 334 | 60 | 283 | 3.72e-21 | 92.0 |
| Msa0404760 | MtrunA17_Chr3g0102621 | 28.175 | 252 | 149 | 11 | 76 | 305 | 5 | 246 | 8.91e-19 | 85.5 |
| Msa0404760 | MtrunA17_Chr3g0102861 | 28.879 | 232 | 134 | 9 | 126 | 334 | 49 | 272 | 6.71e-18 | 82.8 |
| Msa0404760 | MtrunA17_Chr3g0103471 | 31.500 | 200 | 109 | 9 | 126 | 305 | 49 | 240 | 2.23e-17 | 81.3 |
| Msa0404760 | MtrunA17_Chr6g0462981 | 29.592 | 196 | 116 | 9 | 123 | 305 | 70 | 256 | 1.49e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404760 | AT5G43080.1 | 46.779 | 357 | 163 | 6 | 3 | 348 | 12 | 352 | 8.44e-110 | 325 |
| Msa0404760 | AT5G43080.2 | 45.938 | 357 | 161 | 7 | 3 | 348 | 12 | 347 | 2.42e-106 | 316 |
| Msa0404760 | AT1G47230.2 | 45.179 | 363 | 172 | 6 | 3 | 348 | 11 | 363 | 1.92e-104 | 312 |
| Msa0404760 | AT1G47230.1 | 45.304 | 362 | 172 | 6 | 3 | 348 | 11 | 362 | 2.29e-104 | 311 |
| Msa0404760 | AT1G47210.2 | 44.536 | 366 | 176 | 4 | 3 | 348 | 11 | 369 | 1.08e-102 | 307 |
| Msa0404760 | AT1G47220.1 | 50.883 | 283 | 128 | 2 | 77 | 348 | 41 | 323 | 3.77e-93 | 281 |
| Msa0404760 | AT1G80370.1 | 39.860 | 286 | 158 | 3 | 72 | 346 | 177 | 459 | 3.86e-64 | 211 |
| Msa0404760 | AT5G11300.1 | 41.696 | 283 | 138 | 4 | 67 | 337 | 159 | 426 | 1.83e-63 | 209 |
| Msa0404760 | AT1G44110.1 | 40.860 | 279 | 152 | 2 | 79 | 346 | 181 | 457 | 6.49e-62 | 205 |
| Msa0404760 | AT1G15570.1 | 41.353 | 266 | 142 | 3 | 92 | 346 | 188 | 450 | 1.17e-59 | 199 |
| Msa0404760 | AT5G25380.3 | 39.286 | 280 | 154 | 4 | 79 | 346 | 160 | 435 | 3.87e-58 | 195 |
| Msa0404760 | AT5G25380.1 | 39.286 | 280 | 154 | 4 | 79 | 346 | 160 | 435 | 3.87e-58 | 195 |
| Msa0404760 | AT5G25380.4 | 39.286 | 280 | 154 | 4 | 79 | 346 | 166 | 441 | 7.08e-58 | 194 |
| Msa0404760 | AT5G25380.2 | 38.403 | 263 | 147 | 3 | 79 | 329 | 160 | 419 | 1.64e-54 | 185 |
| Msa0404760 | AT1G77390.1 | 36.426 | 291 | 160 | 3 | 67 | 346 | 165 | 441 | 2.45e-54 | 185 |
| Msa0404760 | AT5G11300.2 | 41.532 | 248 | 109 | 5 | 67 | 293 | 159 | 391 | 1.32e-51 | 177 |
| Msa0404760 | AT1G47210.1 | 42.328 | 189 | 93 | 3 | 3 | 182 | 11 | 192 | 3.35e-39 | 138 |
| Msa0404760 | AT4G37490.1 | 33.588 | 262 | 147 | 8 | 92 | 336 | 165 | 416 | 2.78e-32 | 125 |
| Msa0404760 | AT2G26760.1 | 30.619 | 307 | 178 | 6 | 43 | 337 | 95 | 378 | 3.67e-32 | 124 |
| Msa0404760 | AT5G06150.1 | 32.364 | 275 | 164 | 8 | 71 | 333 | 160 | 424 | 5.49e-32 | 125 |
| Msa0404760 | AT1G76310.1 | 29.537 | 281 | 177 | 6 | 67 | 335 | 152 | 423 | 2.92e-31 | 123 |
| Msa0404760 | AT1G16330.1 | 30.035 | 283 | 159 | 9 | 58 | 324 | 370 | 629 | 8.75e-31 | 124 |
| Msa0404760 | AT3G11520.1 | 33.206 | 262 | 154 | 7 | 83 | 333 | 150 | 401 | 1.41e-30 | 120 |
| Msa0404760 | AT1G20610.1 | 30.120 | 249 | 154 | 5 | 92 | 329 | 177 | 416 | 1.61e-30 | 120 |
| Msa0404760 | AT3G11520.2 | 34.894 | 235 | 132 | 7 | 83 | 306 | 150 | 374 | 7.26e-29 | 115 |
| Msa0404760 | AT4G35620.1 | 35.019 | 257 | 141 | 8 | 92 | 334 | 172 | 416 | 1.41e-27 | 112 |
| Msa0404760 | AT1G76310.2 | 30.204 | 245 | 150 | 6 | 66 | 298 | 151 | 386 | 1.62e-27 | 112 |
| Msa0404760 | AT1G76310.3 | 27.184 | 309 | 176 | 7 | 67 | 335 | 152 | 451 | 7.17e-27 | 111 |
| Msa0404760 | AT2G17620.1 | 34.317 | 271 | 151 | 8 | 92 | 350 | 171 | 426 | 1.12e-26 | 110 |
| Msa0404760 | AT4G35620.2 | 37.915 | 211 | 106 | 7 | 92 | 289 | 172 | 370 | 9.28e-26 | 107 |
| Msa0404760 | AT1G76310.4 | 30.556 | 180 | 110 | 4 | 66 | 233 | 151 | 327 | 1.22e-18 | 86.3 |
| Msa0404760 | AT5G06150.2 | 35.928 | 167 | 91 | 6 | 71 | 225 | 160 | 322 | 1.90e-18 | 85.5 |
| Msa0404760 | AT1G20590.1 | 32.278 | 158 | 88 | 5 | 156 | 301 | 66 | 216 | 1.03e-15 | 76.6 |
| Msa0404760 | AT1G34460.9 | 28.774 | 212 | 125 | 9 | 16 | 225 | 191 | 378 | 5.95e-11 | 63.9 |
| Msa0404760 | AT1G34460.6 | 28.774 | 212 | 125 | 9 | 16 | 225 | 205 | 392 | 6.43e-11 | 63.9 |
| Msa0404760 | AT1G34460.3 | 28.774 | 212 | 125 | 9 | 16 | 225 | 205 | 392 | 6.43e-11 | 63.9 |
| Msa0404760 | AT1G34460.8 | 28.774 | 212 | 125 | 9 | 16 | 225 | 205 | 392 | 6.43e-11 | 63.9 |
| Msa0404760 | AT1G34460.1 | 28.774 | 212 | 125 | 9 | 16 | 225 | 205 | 392 | 6.43e-11 | 63.9 |
| Msa0404760 | AT1G34460.5 | 28.774 | 212 | 125 | 9 | 16 | 225 | 205 | 392 | 7.99e-11 | 63.5 |
Find 110 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAGAAAGTGATGAAAATT+AGG | 0.186483 | 3_2:+37469798 | None:intergenic |
| TAAAACAATCCTCTGTCTTT+TGG | 0.193245 | 3_2:+37469672 | None:intergenic |
| CATGCTGCTGGACTGGATTT+TGG | 0.200580 | 3_2:-37467448 | Msa0404760:three_prime_UTR |
| GTGGTGATACTTTCAAATTT+TGG | 0.203595 | 3_2:-37467509 | Msa0404760:three_prime_UTR |
| ATCACGTTTGGCATTGATTT+TGG | 0.221896 | 3_2:+37469510 | None:intergenic |
| TTAAGAAATGTTATGACATT+AGG | 0.245490 | 3_2:+37468351 | None:intergenic |
| ATGAACCGGCTTATTCAAAT+TGG | 0.248642 | 3_2:+37469534 | None:intergenic |
| TACTCATCTCTGTGCATATT+TGG | 0.249159 | 3_2:-37467089 | Msa0404760:three_prime_UTR |
| TCCCTTTCAGGAGGTTTATT+GGG | 0.251091 | 3_2:-37468236 | Msa0404760:intron |
| GGTTGCCCATTTCAAAGTTT+AGG | 0.298700 | 3_2:+37468373 | None:intergenic |
| TAAGAAATGTTATGACATTA+GGG | 0.300153 | 3_2:+37468352 | None:intergenic |
| CAGATATTCAAACTGCAAAT+TGG | 0.300324 | 3_2:+37468099 | None:intergenic |
| GTTGCCCATTTCAAAGTTTA+GGG | 0.302240 | 3_2:+37468374 | None:intergenic |
| TAAGTCCCTAAACTTTGAAA+TGG | 0.303906 | 3_2:-37468379 | Msa0404760:CDS |
| TTCCCTTTCAGGAGGTTTAT+TGG | 0.306403 | 3_2:-37468237 | Msa0404760:intron |
| AAGCAGTCAGCACCAGTAAT+TGG | 0.307691 | 3_2:+37467412 | None:intergenic |
| TCTTGCTGACTTAAGCTTGT+TGG | 0.319462 | 3_2:-37468068 | Msa0404760:CDS |
| AAATATGAATTTGTTTATCA+TGG | 0.331512 | 3_2:+37467293 | None:intergenic |
| TTACAGACTCAACATGATTA+TGG | 0.332086 | 3_2:+37467050 | None:intergenic |
| GTGGCTGAATTCTTGAGGTT+AGG | 0.334651 | 3_2:+37469577 | None:intergenic |
| GATAAGTGTGTTTGTTATCA+TGG | 0.348037 | 3_2:+37467013 | None:intergenic |
| TGGCTGAATTCTTGAGGTTA+GGG | 0.348228 | 3_2:+37469578 | None:intergenic |
| AATCTGTTGGTTATCACGTT+TGG | 0.367477 | 3_2:+37469498 | None:intergenic |
| CTTATTCAAATTGGAATCAA+TGG | 0.369939 | 3_2:+37469543 | None:intergenic |
| GACTTGTGGTGGTTGTTGAT+TGG | 0.372479 | 3_2:+37469702 | None:intergenic |
| ATATATAATAATCCAATTAC+TGG | 0.374369 | 3_2:-37467424 | Msa0404760:three_prime_UTR |
| ACTGACAGATGAAGCGTCTC+TGG | 0.379014 | 3_2:+37469200 | None:intergenic |
| TGAGAGGGACATTGGTTGAT+TGG | 0.379637 | 3_2:-37469256 | Msa0404760:CDS |
| GGAGAAAGTGATGAAAATTA+GGG | 0.379990 | 3_2:+37469799 | None:intergenic |
| TTCATTGCTGAACAATATAA+AGG | 0.381130 | 3_2:-37467551 | Msa0404760:exon |
| TCCGTCCCTGTGTGAATGCT+TGG | 0.381462 | 3_2:-37467866 | Msa0404760:CDS |
| CTCCATTGTGCGAAGATAAT+CGG | 0.397103 | 3_2:+37469450 | None:intergenic |
| ATGGCCACATGCTGCTGGAC+TGG | 0.398568 | 3_2:-37467455 | Msa0404760:three_prime_UTR |
| TCAATTGTTTATGATTTCTA+TGG | 0.402405 | 3_2:-37467216 | Msa0404760:three_prime_UTR |
| TTCTTGCCAGATTTATTATC+CGG | 0.409058 | 3_2:-37467994 | Msa0404760:CDS |
| TCAAGAGCAATGACATGAAT+AGG | 0.410382 | 3_2:+37468509 | None:intergenic |
| TGGTTGTTGATTGGTGTTGT+TGG | 0.411534 | 3_2:+37469711 | None:intergenic |
| TCCAGGCCGGATAATAAATC+TGG | 0.432284 | 3_2:+37467988 | None:intergenic |
| TACTGATGGCCACATGCTGC+TGG | 0.445267 | 3_2:-37467460 | Msa0404760:three_prime_UTR |
| TGAATTTGTTTATCATGGAC+AGG | 0.446783 | 3_2:+37467298 | None:intergenic |
| GGTGACATCGGAAAGGGTTA+AGG | 0.453180 | 3_2:+37466979 | None:intergenic |
| TTATCTGCTTGTACTGCTAA+TGG | 0.453475 | 3_2:-37467374 | Msa0404760:three_prime_UTR |
| TTTGTCACGAACAGCTTTGA+AGG | 0.454235 | 3_2:+37467771 | None:intergenic |
| AAGTAATGATTCGGTATCTC+TGG | 0.454323 | 3_2:+37467615 | None:intergenic |
| TCCGGCCTGGAGTACATCCT+TGG | 0.454728 | 3_2:-37467976 | Msa0404760:CDS |
| TCTTCTTCAAAGTAATGATT+CGG | 0.456454 | 3_2:+37467606 | None:intergenic |
| ATGTAGTACAATTAACTTTG+TGG | 0.462691 | 3_2:-37467580 | Msa0404760:CDS |
| AAGTCCCTAAACTTTGAAAT+GGG | 0.462848 | 3_2:-37468378 | Msa0404760:CDS |
| GCCATCTGTTGTCGCTGCAT+CGG | 0.466961 | 3_2:-37468023 | Msa0404760:CDS |
| TGCTGACAGGTTCAATAGAT+AGG | 0.467250 | 3_2:+37469159 | None:intergenic |
| GCCAGATTTATTATCCGGCC+TGG | 0.470239 | 3_2:-37467989 | Msa0404760:CDS |
| GATGAGTAGTTCAACTCTAA+AGG | 0.472561 | 3_2:+37467104 | None:intergenic |
| ATTGGTTGATTGGTTAGTTG+AGG | 0.479448 | 3_2:-37469246 | Msa0404760:CDS |
| GTTGTTGGCTCTCTTCTTTG+AGG | 0.481908 | 3_2:+37469726 | None:intergenic |
| TGATTCCAATTTGAATAAGC+CGG | 0.489108 | 3_2:-37469539 | Msa0404760:CDS |
| AAGTGTTGCTCTGAAAGAAT+AGG | 0.489336 | 3_2:+37469778 | None:intergenic |
| GTATCTCTGGCGATGAAGGC+AGG | 0.491666 | 3_2:+37467628 | None:intergenic |
| AGTGTGTTTGTTATCATGGT+AGG | 0.492704 | 3_2:+37467017 | None:intergenic |
| GTTAATACAGCCTATGCTCT+GGG | 0.492962 | 3_2:-37467323 | Msa0404760:three_prime_UTR |
| TGTTAATACAGCCTATGCTC+TGG | 0.494159 | 3_2:-37467324 | Msa0404760:three_prime_UTR |
| TTCGGTATCTCTGGCGATGA+AGG | 0.497141 | 3_2:+37467624 | None:intergenic |
| CCGTCCCTGTGTGAATGCTT+GGG | 0.501028 | 3_2:-37467865 | Msa0404760:CDS |
| ATGATTTGTATATGTCAAGA+AGG | 0.502659 | 3_2:-37467801 | Msa0404760:CDS |
| TGCATATTTGGTGATACAAT+GGG | 0.502898 | 3_2:-37467077 | Msa0404760:three_prime_UTR |
| AATTGGAATCAATGGAAGGA+AGG | 0.516712 | 3_2:+37469551 | None:intergenic |
| AGATCTAAGCTTCAGCTGCT+TGG | 0.517791 | 3_2:-37469137 | Msa0404760:CDS |
| CCGGCCTGGAGTACATCCTT+GGG | 0.517846 | 3_2:-37467975 | Msa0404760:intron |
| GGTTATACTGCAATAGTTAG+TGG | 0.518947 | 3_2:-37467251 | Msa0404760:three_prime_UTR |
| CTTCACTACACTCTGAAAGA+TGG | 0.519308 | 3_2:-37469758 | Msa0404760:exon |
| TTGTATATGTCAAGAAGGGC+AGG | 0.519915 | 3_2:-37467796 | Msa0404760:CDS |
| TTCAAATTGGAATCAATGGA+AGG | 0.530972 | 3_2:+37469547 | None:intergenic |
| ATCAAACATGAGAGGGACAT+TGG | 0.531177 | 3_2:-37469264 | Msa0404760:CDS |
| CTACATTGGAGTTTCTGAGT+GGG | 0.536398 | 3_2:+37469607 | None:intergenic |
| GTTATACTGCAATAGTTAGT+GGG | 0.543346 | 3_2:-37467250 | Msa0404760:three_prime_UTR |
| GTGCATATTTGGTGATACAA+TGG | 0.543995 | 3_2:-37467078 | Msa0404760:three_prime_UTR |
| CATAAGGCTGAATAATCTGT+TGG | 0.544194 | 3_2:+37469485 | None:intergenic |
| TCGGAGATATCAGATACATA+AGG | 0.545360 | 3_2:+37469469 | None:intergenic |
| ACCGATGCAGCGACAACAGA+TGG | 0.555704 | 3_2:+37468022 | None:intergenic |
| TCTGGAACAGTTAAAATGTG+TGG | 0.557657 | 3_2:-37467655 | Msa0404760:intron |
| CCACTCAGAAACTCCAATGT+AGG | 0.559110 | 3_2:-37469606 | Msa0404760:CDS |
| ATTGGAATCAATGGAAGGAA+GGG | 0.563267 | 3_2:+37469552 | None:intergenic |
| GGGTTGTGGCTGAATTCTTG+AGG | 0.568858 | 3_2:+37469572 | None:intergenic |
| TGGAGAGGTGACATCGGAAA+GGG | 0.570202 | 3_2:+37466973 | None:intergenic |
| CCCAAGGATGTACTCCAGGC+CGG | 0.572797 | 3_2:+37467975 | None:intergenic |
| TGAAGCTTAGATCTGCTGAC+AGG | 0.573991 | 3_2:+37469146 | None:intergenic |
| TTTACCCAAGGATGTACTCC+AGG | 0.575735 | 3_2:+37467971 | None:intergenic |
| TCAACAACCACCACAAGTCA+TGG | 0.576674 | 3_2:-37469698 | Msa0404760:CDS |
| CTCCGATTATCTTCGCACAA+TGG | 0.576963 | 3_2:-37469452 | Msa0404760:CDS |
| ACTAACCTTTCGATTCTCAC+AGG | 0.577934 | 3_2:+37468209 | None:intergenic |
| ATCAATGGAAGGAAGGGTTG+TGG | 0.587426 | 3_2:+37469558 | None:intergenic |
| TTGGGAACCATGACTTGTGG+TGG | 0.593041 | 3_2:+37469691 | None:intergenic |
| TGGACAGGACCCCAGAGCAT+AGG | 0.594229 | 3_2:+37467313 | None:intergenic |
| CTGGAGAGGTGACATCGGAA+AGG | 0.595104 | 3_2:+37466972 | None:intergenic |
| CCTACATTGGAGTTTCTGAG+TGG | 0.595793 | 3_2:+37469606 | None:intergenic |
| TGATTTGTATATGTCAAGAA+GGG | 0.596859 | 3_2:-37467800 | Msa0404760:CDS |
| TTCTCAAGATAACCAACCAT+TGG | 0.599787 | 3_2:+37469305 | None:intergenic |
| CGATTATCTTCGCACAATGG+AGG | 0.617827 | 3_2:-37469449 | Msa0404760:intron |
| TATCTTGAGAATGTTCAAAG+AGG | 0.624395 | 3_2:-37469293 | Msa0404760:CDS |
| GCATTACATCAAACATGAGA+GGG | 0.627034 | 3_2:-37469271 | Msa0404760:CDS |
| GGCATTACATCAAACATGAG+AGG | 0.629142 | 3_2:-37469272 | Msa0404760:CDS |
| CCCAAGCATTCACACAGGGA+CGG | 0.632875 | 3_2:+37467865 | None:intergenic |
| AAATCCAGTCCAGCAGCATG+TGG | 0.653607 | 3_2:+37467451 | None:intergenic |
| AAGAGATATATTATAGCACA+TGG | 0.656766 | 3_2:-37467160 | Msa0404760:three_prime_UTR |
| GATTGCCTGTGAGAATCGAA+AGG | 0.658594 | 3_2:-37468214 | Msa0404760:intron |
| TTAATACAGCCTATGCTCTG+GGG | 0.658962 | 3_2:-37467322 | Msa0404760:three_prime_UTR |
| TGACAAATACAAGCAGAACA+AGG | 0.662422 | 3_2:-37467755 | Msa0404760:intron |
| GTAACCCAAGCATTCACACA+GGG | 0.699025 | 3_2:+37467861 | None:intergenic |
| TGTAACCCAAGCATTCACAC+AGG | 0.705344 | 3_2:+37467860 | None:intergenic |
| TCATGGTTCCCAAAAGACAG+AGG | 0.710281 | 3_2:-37469681 | Msa0404760:CDS |
| TGAATGCTTGGGTTACACGT+CGG | 0.724505 | 3_2:-37467854 | Msa0404760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAACAAATTCATATTTTT+TGG | - | chr3_2:37469496-37469515 | Msa0404760:CDS | 10.0% |
| !! | ATATATAATAATCCAATTAC+TGG | - | chr3_2:37469360-37469379 | Msa0404760:intron | 15.0% |
| !!! | AAATATGAATTTGTTTATCA+TGG | + | chr3_2:37469494-37469513 | None:intergenic | 15.0% |
| !! | ATAACAATTAATCAAGAAGA+GGG | + | chr3_2:37467365-37467384 | None:intergenic | 20.0% |
| !! | AATAACAATTAATCAAGAAG+AGG | + | chr3_2:37467366-37467385 | None:intergenic | 20.0% |
| !!! | TGTTATTTTTACAAAGATCT+AGG | - | chr3_2:37467738-37467757 | Msa0404760:intron | 20.0% |
| !!! | TATTTTTGTATAAGCTATCT+TGG | - | chr3_2:37467870-37467889 | Msa0404760:CDS | 20.0% |
| !! | TCAAATTCATTAATCTCTAA+GGG | + | chr3_2:37468022-37468041 | None:intergenic | 20.0% |
| !! | ATCAAATTCATTAATCTCTA+AGG | + | chr3_2:37468023-37468042 | None:intergenic | 20.0% |
| !! | TAGAGATTAATGAATTTGAT+AGG | - | chr3_2:37468023-37468042 | Msa0404760:CDS | 20.0% |
| !! | AGAGATTAATGAATTTGATA+GGG | - | chr3_2:37468024-37468043 | Msa0404760:CDS | 20.0% |
| !! | ATAGATGATAGAACATTAAT+GGG | - | chr3_2:37468052-37468071 | Msa0404760:CDS | 20.0% |
| !! | TAAGAAATGTTATGACATTA+GGG | + | chr3_2:37468435-37468454 | None:intergenic | 20.0% |
| !! | TTAAGAAATGTTATGACATT+AGG | + | chr3_2:37468436-37468455 | None:intergenic | 20.0% |
| !! | TCAATTGTTTATGATTTCTA+TGG | - | chr3_2:37469568-37469587 | Msa0404760:CDS | 20.0% |
| ! | CTTATTCAAATTGGAATCAA+TGG | + | chr3_2:37467244-37467263 | None:intergenic | 25.0% |
| !!! | CATTGTTCACATGTTATTTT+GGG | + | chr3_2:37467914-37467933 | None:intergenic | 25.0% |
| !!! | ACATTGTTCACATGTTATTT+TGG | + | chr3_2:37467915-37467934 | None:intergenic | 25.0% |
| ! | GATAGATGATAGAACATTAA+TGG | - | chr3_2:37468051-37468070 | Msa0404760:CDS | 25.0% |
| ! | TAGATGATAGAACATTAATG+GGG | - | chr3_2:37468053-37468072 | Msa0404760:CDS | 25.0% |
| ! | ACTTTCTGCATATTTAAAAG+TGG | + | chr3_2:37468176-37468195 | None:intergenic | 25.0% |
| ! | GTCATAACATTTCTTAAGTA+AGG | - | chr3_2:37468439-37468458 | Msa0404760:intron | 25.0% |
| ! | TAACAACAAATATTTACCCA+AGG | + | chr3_2:37468828-37468847 | None:intergenic | 25.0% |
| !!! | TGGGTAAATATTTGTTGTTA+TGG | - | chr3_2:37468828-37468847 | Msa0404760:intron | 25.0% |
| !! | ATGATTTGTATATGTCAAGA+AGG | - | chr3_2:37468983-37469002 | Msa0404760:intron | 25.0% |
| !! | TGATTTGTATATGTCAAGAA+GGG | - | chr3_2:37468984-37469003 | Msa0404760:intron | 25.0% |
| ! | TCTTCTTCAAAGTAATGATT+CGG | + | chr3_2:37469181-37469200 | None:intergenic | 25.0% |
| ! | ATGTAGTACAATTAACTTTG+TGG | - | chr3_2:37469204-37469223 | Msa0404760:CDS | 25.0% |
| ! | TTCATTGCTGAACAATATAA+AGG | - | chr3_2:37469233-37469252 | Msa0404760:CDS | 25.0% |
| !! | ACAATATAAAGGACTTTTTG+TGG | - | chr3_2:37469244-37469263 | Msa0404760:CDS | 25.0% |
| !! | TGGTGATACTTTCAAATTTT+GGG | - | chr3_2:37469276-37469295 | Msa0404760:CDS | 25.0% |
| !! | TTTTGACAATCAATTACTGA+TGG | - | chr3_2:37469310-37469329 | Msa0404760:CDS | 25.0% |
| ! | AAGAGATATATTATAGCACA+TGG | - | chr3_2:37469624-37469643 | Msa0404760:CDS | 25.0% |
| ! | AAAACAATCCTCTGTCTTTT+GGG | + | chr3_2:37467114-37467133 | None:intergenic | 30.0% |
| ! | TAAAACAATCCTCTGTCTTT+TGG | + | chr3_2:37467115-37467134 | None:intergenic | 30.0% |
| ! | AAAAGACAGAGGATTGTTTT+AGG | - | chr3_2:37467114-37467133 | Msa0404760:three_prime_UTR | 30.0% |
| AAAAACAGGAAGATTGAGAT+CGG | + | chr3_2:37467148-37467167 | None:intergenic | 30.0% | |
| TTCAAATTGGAATCAATGGA+AGG | + | chr3_2:37467240-37467259 | None:intergenic | 30.0% | |
| TGATTCCAATTTGAATAAGC+CGG | - | chr3_2:37467245-37467264 | Msa0404760:three_prime_UTR | 30.0% | |
| TATCTTGAGAATGTTCAAAG+AGG | - | chr3_2:37467491-37467510 | Msa0404760:three_prime_UTR | 30.0% | |
| ATAAGCAATTTACCCAAACA+AGG | + | chr3_2:37467764-37467783 | None:intergenic | 30.0% | |
| ! | TTTTGTATAAGCTATCTTGG+AGG | - | chr3_2:37467873-37467892 | Msa0404760:intron | 30.0% |
| CATACGTGTTATCAGTAATT+TGG | + | chr3_2:37468236-37468255 | None:intergenic | 30.0% | |
| !! | GCTTCCATTTTTAATACCTA+CGG | + | chr3_2:37468376-37468395 | None:intergenic | 30.0% |
| ! | TAAGTCCCTAAACTTTGAAA+TGG | - | chr3_2:37468405-37468424 | Msa0404760:CDS | 30.0% |
| !! | AAGTCCCTAAACTTTGAAAT+GGG | - | chr3_2:37468406-37468425 | Msa0404760:CDS | 30.0% |
| ATAACAGTTGCACATAAACA+TGG | + | chr3_2:37468525-37468544 | None:intergenic | 30.0% | |
| CAGATATTCAAACTGCAAAT+TGG | + | chr3_2:37468688-37468707 | None:intergenic | 30.0% | |
| TTCTTGCCAGATTTATTATC+CGG | - | chr3_2:37468790-37468809 | Msa0404760:intron | 30.0% | |
| !!! | ATTGACTTGAAATCGTTTTC+TGG | - | chr3_2:37469111-37469130 | Msa0404760:intron | 30.0% |
| ! | ATATAAAGGACTTTTTGTGG+TGG | - | chr3_2:37469247-37469266 | Msa0404760:CDS | 30.0% |
| ! | TATAAAGGACTTTTTGTGGT+GGG | - | chr3_2:37469248-37469267 | Msa0404760:CDS | 30.0% |
| ! | GTGGTGATACTTTCAAATTT+TGG | - | chr3_2:37469275-37469294 | Msa0404760:CDS | 30.0% |
| ! | GGTGATACTTTCAAATTTTG+GGG | - | chr3_2:37469277-37469296 | Msa0404760:CDS | 30.0% |
| ! | GTGATACTTTCAAATTTTGG+GGG | - | chr3_2:37469278-37469297 | Msa0404760:CDS | 30.0% |
| !! | TTCAAATTTTGGGGGTTATT+TGG | - | chr3_2:37469286-37469305 | Msa0404760:CDS | 30.0% |
| ! | TGAATTTGTTTATCATGGAC+AGG | + | chr3_2:37469489-37469508 | None:intergenic | 30.0% |
| !! | TTTTTGGTCAATTGCTGAAT+CGG | - | chr3_2:37469512-37469531 | Msa0404760:CDS | 30.0% |
| GTTATACTGCAATAGTTAGT+GGG | - | chr3_2:37469534-37469553 | Msa0404760:CDS | 30.0% | |
| ! | TGCATATTTGGTGATACAAT+GGG | - | chr3_2:37469707-37469726 | Msa0404760:CDS | 30.0% |
| TTACAGACTCAACATGATTA+TGG | + | chr3_2:37469737-37469756 | None:intergenic | 30.0% | |
| !! | GATAAGTGTGTTTGTTATCA+TGG | + | chr3_2:37469774-37469793 | None:intergenic | 30.0% |
| !! | AAGTGTTGCTCTGAAAGAAT+AGG | + | chr3_2:37467009-37467028 | None:intergenic | 35.0% |
| !! | GTGGGTTGATAATCAAAAAC+AGG | + | chr3_2:37467162-37467181 | None:intergenic | 35.0% |
| ATTGGAATCAATGGAAGGAA+GGG | + | chr3_2:37467235-37467254 | None:intergenic | 35.0% | |
| AATTGGAATCAATGGAAGGA+AGG | + | chr3_2:37467236-37467255 | None:intergenic | 35.0% | |
| ! | ATGAACCGGCTTATTCAAAT+TGG | + | chr3_2:37467253-37467272 | None:intergenic | 35.0% |
| !!! | GCATTGATTTTGGTATGAAC+CGG | + | chr3_2:37467267-37467286 | None:intergenic | 35.0% |
| !!! | ATCACGTTTGGCATTGATTT+TGG | + | chr3_2:37467277-37467296 | None:intergenic | 35.0% |
| ! | AATCTGTTGGTTATCACGTT+TGG | + | chr3_2:37467289-37467308 | None:intergenic | 35.0% |
| CATAAGGCTGAATAATCTGT+TGG | + | chr3_2:37467302-37467321 | None:intergenic | 35.0% | |
| TCGGAGATATCAGATACATA+AGG | + | chr3_2:37467318-37467337 | None:intergenic | 35.0% | |
| AAAAAGAGAAGACCAATGGT+TGG | - | chr3_2:37467467-37467486 | Msa0404760:three_prime_UTR | 35.0% | |
| TTCTCAAGATAACCAACCAT+TGG | + | chr3_2:37467482-37467501 | None:intergenic | 35.0% | |
| GCATTACATCAAACATGAGA+GGG | - | chr3_2:37467513-37467532 | Msa0404760:three_prime_UTR | 35.0% | |
| ! | ATTGGTTGATTGGTTAGTTG+AGG | - | chr3_2:37467538-37467557 | Msa0404760:three_prime_UTR | 35.0% |
| CATGTGAACAATGTCATAAG+TGG | - | chr3_2:37467921-37467940 | Msa0404760:intron | 35.0% | |
| TCAAGAGCAATGACATGAAT+AGG | + | chr3_2:37468278-37468297 | None:intergenic | 35.0% | |
| ! | TTTTTAATACCTACGGTAGC+AGG | + | chr3_2:37468369-37468388 | None:intergenic | 35.0% |
| GCTACCGTAGGTATTAAAAA+TGG | - | chr3_2:37468369-37468388 | Msa0404760:CDS | 35.0% | |
| GTTGCCCATTTCAAAGTTTA+GGG | + | chr3_2:37468413-37468432 | None:intergenic | 35.0% | |
| CCAATTACTTCATTTCAGCA+AGG | + | chr3_2:37468497-37468516 | None:intergenic | 35.0% | |
| CCTTGCTGAAATGAAGTAAT+TGG | - | chr3_2:37468494-37468513 | Msa0404760:intron | 35.0% | |
| AACTGTTATGTTTCCCTTTC+AGG | - | chr3_2:37468536-37468555 | Msa0404760:intron | 35.0% | |
| TGACAAATACAAGCAGAACA+AGG | - | chr3_2:37469029-37469048 | Msa0404760:intron | 35.0% | |
| ! | TCTGGAACAGTTAAAATGTG+TGG | - | chr3_2:37469129-37469148 | Msa0404760:CDS | 35.0% |
| !! | AAGTAATGATTCGGTATCTC+TGG | + | chr3_2:37469172-37469191 | None:intergenic | 35.0% |
| TTATCTGCTTGTACTGCTAA+TGG | - | chr3_2:37469410-37469429 | Msa0404760:intron | 35.0% | |
| GGTTATACTGCAATAGTTAG+TGG | - | chr3_2:37469533-37469552 | Msa0404760:CDS | 35.0% | |
| GATGAGTAGTTCAACTCTAA+AGG | + | chr3_2:37469683-37469702 | None:intergenic | 35.0% | |
| TACTCATCTCTGTGCATATT+TGG | - | chr3_2:37469695-37469714 | Msa0404760:CDS | 35.0% | |
| ! | GTGCATATTTGGTGATACAA+TGG | - | chr3_2:37469706-37469725 | Msa0404760:CDS | 35.0% |
| !! | AGTGTGTTTGTTATCATGGT+AGG | + | chr3_2:37469770-37469789 | None:intergenic | 35.0% |
| ! | CTTCACTACACTCTGAAAGA+TGG | - | chr3_2:37467026-37467045 | Msa0404760:three_prime_UTR | 40.0% |
| !! | TGGTTGTTGATTGGTGTTGT+TGG | + | chr3_2:37467076-37467095 | None:intergenic | 40.0% |
| CTACATTGGAGTTTCTGAGT+GGG | + | chr3_2:37467180-37467199 | None:intergenic | 40.0% | |
| ! | GGTTAGGGTTTTTCCTACAT+TGG | + | chr3_2:37467194-37467213 | None:intergenic | 40.0% |
| TGGCTGAATTCTTGAGGTTA+GGG | + | chr3_2:37467209-37467228 | None:intergenic | 40.0% | |
| CTCCATTGTGCGAAGATAAT+CGG | + | chr3_2:37467337-37467356 | None:intergenic | 40.0% | |
| GCAGAAAAAGAGAAGACCAA+TGG | - | chr3_2:37467463-37467482 | Msa0404760:three_prime_UTR | 40.0% | |
| GGCATTACATCAAACATGAG+AGG | - | chr3_2:37467512-37467531 | Msa0404760:three_prime_UTR | 40.0% | |
| ATCAAACATGAGAGGGACAT+TGG | - | chr3_2:37467520-37467539 | Msa0404760:three_prime_UTR | 40.0% | |
| TGCTGACAGGTTCAATAGAT+AGG | + | chr3_2:37467628-37467647 | None:intergenic | 40.0% | |
| !! | ACAAAGATCTAGGCCTTGTT+TGG | - | chr3_2:37467748-37467767 | Msa0404760:intron | 40.0% |
| !! | CAAAGATCTAGGCCTTGTTT+GGG | - | chr3_2:37467749-37467768 | Msa0404760:intron | 40.0% |
| ! | CTCTAAGGGCATGTTTGTAT+TGG | + | chr3_2:37468008-37468027 | None:intergenic | 40.0% |
| TACTGATAACACGTATGACC+TGG | - | chr3_2:37468239-37468258 | Msa0404760:intron | 40.0% | |
| ATAGGATGTTTACCTCTTCC+AGG | + | chr3_2:37468260-37468279 | None:intergenic | 40.0% | |
| GGTTGCCCATTTCAAAGTTT+AGG | + | chr3_2:37468414-37468433 | None:intergenic | 40.0% | |
| TGTTATGTTTCCCTTTCAGG+AGG | - | chr3_2:37468539-37468558 | Msa0404760:intron | 40.0% | |
| TTCCCTTTCAGGAGGTTTAT+TGG | - | chr3_2:37468547-37468566 | Msa0404760:intron | 40.0% | |
| TCCCTTTCAGGAGGTTTATT+GGG | - | chr3_2:37468548-37468567 | Msa0404760:intron | 40.0% | |
| TCCCAATAAACCTCCTGAAA+GGG | + | chr3_2:37468552-37468571 | None:intergenic | 40.0% | |
| ATCCCAATAAACCTCCTGAA+AGG | + | chr3_2:37468553-37468572 | None:intergenic | 40.0% | |
| ACTAACCTTTCGATTCTCAC+AGG | + | chr3_2:37468578-37468597 | None:intergenic | 40.0% | |
| !! | TCTTGCTGACTTAAGCTTGT+TGG | - | chr3_2:37468716-37468735 | Msa0404760:intron | 40.0% |
| TTGTATATGTCAAGAAGGGC+AGG | - | chr3_2:37468988-37469007 | Msa0404760:intron | 40.0% | |
| ! | TTTGTCACGAACAGCTTTGA+AGG | + | chr3_2:37469016-37469035 | None:intergenic | 40.0% |
| TGTTAATACAGCCTATGCTC+TGG | - | chr3_2:37469460-37469479 | Msa0404760:CDS | 40.0% | |
| GTTAATACAGCCTATGCTCT+GGG | - | chr3_2:37469461-37469480 | Msa0404760:CDS | 40.0% | |
| TTAATACAGCCTATGCTCTG+GGG | - | chr3_2:37469462-37469481 | Msa0404760:CDS | 40.0% | |
| !! | GTTGTTGGCTCTCTTCTTTG+AGG | + | chr3_2:37467061-37467080 | None:intergenic | 45.0% |
| GACTTGTGGTGGTTGTTGAT+TGG | + | chr3_2:37467085-37467104 | None:intergenic | 45.0% | |
| TCAACAACCACCACAAGTCA+TGG | - | chr3_2:37467086-37467105 | Msa0404760:three_prime_UTR | 45.0% | |
| !! | CTTTTGGGAACCATGACTTG+TGG | + | chr3_2:37467099-37467118 | None:intergenic | 45.0% |
| TCATGGTTCCCAAAAGACAG+AGG | - | chr3_2:37467103-37467122 | Msa0404760:three_prime_UTR | 45.0% | |
| CCTACATTGGAGTTTCTGAG+TGG | + | chr3_2:37467181-37467200 | None:intergenic | 45.0% | |
| CCACTCAGAAACTCCAATGT+AGG | - | chr3_2:37467178-37467197 | Msa0404760:three_prime_UTR | 45.0% | |
| GTGGCTGAATTCTTGAGGTT+AGG | + | chr3_2:37467210-37467229 | None:intergenic | 45.0% | |
| ATCAATGGAAGGAAGGGTTG+TGG | + | chr3_2:37467229-37467248 | None:intergenic | 45.0% | |
| CTCCGATTATCTTCGCACAA+TGG | - | chr3_2:37467332-37467351 | Msa0404760:three_prime_UTR | 45.0% | |
| CGATTATCTTCGCACAATGG+AGG | - | chr3_2:37467335-37467354 | Msa0404760:three_prime_UTR | 45.0% | |
| ! | TGAGAGGGACATTGGTTGAT+TGG | - | chr3_2:37467528-37467547 | Msa0404760:three_prime_UTR | 45.0% |
| TGAAGCTTAGATCTGCTGAC+AGG | + | chr3_2:37467641-37467660 | None:intergenic | 45.0% | |
| AGATCTAAGCTTCAGCTGCT+TGG | - | chr3_2:37467647-37467666 | Msa0404760:CDS | 45.0% | |
| AAGCCTCATCACACTAAGTG+GGG | + | chr3_2:37468100-37468119 | None:intergenic | 45.0% | |
| CAAGCCTCATCACACTAAGT+GGG | + | chr3_2:37468101-37468120 | None:intergenic | 45.0% | |
| TCAAGCCTCATCACACTAAG+TGG | + | chr3_2:37468102-37468121 | None:intergenic | 45.0% | |
| CTTAGTGTGATGAGGCTTGA+TGG | - | chr3_2:37468102-37468121 | Msa0404760:CDS | 45.0% | |
| TAACACGTATGACCTGGAAG+AGG | - | chr3_2:37468245-37468264 | Msa0404760:intron | 45.0% | |
| GATTGCCTGTGAGAATCGAA+AGG | - | chr3_2:37468570-37468589 | Msa0404760:intron | 45.0% | |
| TCCAGGCCGGATAATAAATC+TGG | + | chr3_2:37468799-37468818 | None:intergenic | 45.0% | |
| TTTACCCAAGGATGTACTCC+AGG | + | chr3_2:37468816-37468835 | None:intergenic | 45.0% | |
| GTAACCCAAGCATTCACACA+GGG | + | chr3_2:37468926-37468945 | None:intergenic | 45.0% | |
| TGTAACCCAAGCATTCACAC+AGG | + | chr3_2:37468927-37468946 | None:intergenic | 45.0% | |
| TGAATGCTTGGGTTACACGT+CGG | - | chr3_2:37468930-37468949 | Msa0404760:intron | 45.0% | |
| !! | AGGACTTTTTGTGGTGGGAT+AGG | - | chr3_2:37469253-37469272 | Msa0404760:CDS | 45.0% |
| !! | ACTTTTTGTGGTGGGATAGG+TGG | - | chr3_2:37469256-37469275 | Msa0404760:CDS | 45.0% |
| AAGCAGTCAGCACCAGTAAT+TGG | + | chr3_2:37469375-37469394 | None:intergenic | 45.0% | |
| !!! | TTATTTTATTTACAATTTTT+AGG | - | chr3_2:37467407-37467426 | Msa0404760:three_prime_UTR | 5.0% |
| !!! | TTATAATTATTTCTTATTAT+TGG | - | chr3_2:37469082-37469101 | Msa0404760:intron | 5.0% |
| ! | TTGGGAACCATGACTTGTGG+TGG | + | chr3_2:37467096-37467115 | None:intergenic | 50.0% |
| GGGTTGTGGCTGAATTCTTG+AGG | + | chr3_2:37467215-37467234 | None:intergenic | 50.0% | |
| ! | ACTGACAGATGAAGCGTCTC+TGG | + | chr3_2:37467587-37467606 | None:intergenic | 50.0% |
| AGACCCCACTTAGTGTGATG+AGG | - | chr3_2:37468094-37468113 | Msa0404760:CDS | 50.0% | |
| TGAAGAAATCACCCCACCGA+AGG | - | chr3_2:37468197-37468216 | Msa0404760:intron | 50.0% | |
| AGAAATCCACTGCCTTCGGT+GGG | + | chr3_2:37468212-37468231 | None:intergenic | 50.0% | |
| TGGCAGAAATCCACTGCCTT+CGG | + | chr3_2:37468216-37468235 | None:intergenic | 50.0% | |
| TGTTGTCTTCCTGCTACCGT+AGG | - | chr3_2:37468357-37468376 | Msa0404760:CDS | 50.0% | |
| GCCAGATTTATTATCCGGCC+TGG | - | chr3_2:37468795-37468814 | Msa0404760:intron | 50.0% | |
| TTCGGTATCTCTGGCGATGA+AGG | + | chr3_2:37469163-37469182 | None:intergenic | 50.0% | |
| AAATCCAGTCCAGCAGCATG+TGG | + | chr3_2:37469336-37469355 | None:intergenic | 50.0% | |
| !! | CATGCTGCTGGACTGGATTT+TGG | - | chr3_2:37469336-37469355 | Msa0404760:intron | 50.0% |
| GAAATCCACTGCCTTCGGTG+GGG | + | chr3_2:37468211-37468230 | None:intergenic | 55.0% | |
| CAGAAATCCACTGCCTTCGG+TGG | + | chr3_2:37468213-37468232 | None:intergenic | 55.0% | |
| GCCATCTGTTGTCGCTGCAT+CGG | - | chr3_2:37468761-37468780 | Msa0404760:intron | 55.0% | |
| ACCGATGCAGCGACAACAGA+TGG | + | chr3_2:37468765-37468784 | None:intergenic | 55.0% | |
| TCCGTCCCTGTGTGAATGCT+TGG | - | chr3_2:37468918-37468937 | Msa0404760:intron | 55.0% | |
| CCCAAGCATTCACACAGGGA+CGG | + | chr3_2:37468922-37468941 | None:intergenic | 55.0% | |
| CCGTCCCTGTGTGAATGCTT+GGG | - | chr3_2:37468919-37468938 | Msa0404760:intron | 55.0% | |
| GTATCTCTGGCGATGAAGGC+AGG | + | chr3_2:37469159-37469178 | None:intergenic | 55.0% | |
| TACTGATGGCCACATGCTGC+TGG | - | chr3_2:37469324-37469343 | Msa0404760:CDS | 55.0% | |
| AATCACCCCACCGAAGGCAG+TGG | - | chr3_2:37468203-37468222 | Msa0404760:intron | 60.0% | |
| TCCGGCCTGGAGTACATCCT+TGG | - | chr3_2:37468808-37468827 | Msa0404760:intron | 60.0% | |
| CCCAAGGATGTACTCCAGGC+CGG | + | chr3_2:37468812-37468831 | None:intergenic | 60.0% | |
| CCGGCCTGGAGTACATCCTT+GGG | - | chr3_2:37468809-37468828 | Msa0404760:intron | 60.0% | |
| ATGGCCACATGCTGCTGGAC+TGG | - | chr3_2:37469329-37469348 | Msa0404760:intron | 60.0% | |
| TGGACAGGACCCCAGAGCAT+AGG | + | chr3_2:37469474-37469493 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 37466987 | 37469819 | 37466987 | ID=Msa0404760;Name=Msa0404760 |
| chr3_2 | mRNA | 37466987 | 37469819 | 37466987 | ID=Msa0404760-mRNA-1;Parent=Msa0404760;Name=Msa0404760-mRNA-1;_AED=0.10;_eAED=0.10;_QI=58|0.71|0.87|1|0.71|0.87|8|576|362 |
| chr3_2 | exon | 37466987 | 37467667 | 37466987 | ID=Msa0404760-mRNA-1:exon:7484;Parent=Msa0404760-mRNA-1 |
| chr3_2 | exon | 37467756 | 37467890 | 37467756 | ID=Msa0404760-mRNA-1:exon:7483;Parent=Msa0404760-mRNA-1 |
| chr3_2 | exon | 37467976 | 37468125 | 37467976 | ID=Msa0404760-mRNA-1:exon:7482;Parent=Msa0404760-mRNA-1 |
| chr3_2 | exon | 37468215 | 37468248 | 37468215 | ID=Msa0404760-mRNA-1:exon:7481;Parent=Msa0404760-mRNA-1 |
| chr3_2 | exon | 37468351 | 37468427 | 37468351 | ID=Msa0404760-mRNA-1:exon:7480;Parent=Msa0404760-mRNA-1 |
| chr3_2 | exon | 37468499 | 37468541 | 37468499 | ID=Msa0404760-mRNA-1:exon:7479;Parent=Msa0404760-mRNA-1 |
| chr3_2 | exon | 37469113 | 37469345 | 37469113 | ID=Msa0404760-mRNA-1:exon:7478;Parent=Msa0404760-mRNA-1 |
| chr3_2 | exon | 37469450 | 37469819 | 37469450 | ID=Msa0404760-mRNA-1:exon:7477;Parent=Msa0404760-mRNA-1 |
| chr3_2 | five_prime_UTR | 37469762 | 37469819 | 37469762 | ID=Msa0404760-mRNA-1:five_prime_utr;Parent=Msa0404760-mRNA-1 |
| chr3_2 | CDS | 37469450 | 37469761 | 37469450 | ID=Msa0404760-mRNA-1:cds;Parent=Msa0404760-mRNA-1 |
| chr3_2 | CDS | 37469113 | 37469345 | 37469113 | ID=Msa0404760-mRNA-1:cds;Parent=Msa0404760-mRNA-1 |
| chr3_2 | CDS | 37468499 | 37468541 | 37468499 | ID=Msa0404760-mRNA-1:cds;Parent=Msa0404760-mRNA-1 |
| chr3_2 | CDS | 37468351 | 37468427 | 37468351 | ID=Msa0404760-mRNA-1:cds;Parent=Msa0404760-mRNA-1 |
| chr3_2 | CDS | 37468215 | 37468248 | 37468215 | ID=Msa0404760-mRNA-1:cds;Parent=Msa0404760-mRNA-1 |
| chr3_2 | CDS | 37467976 | 37468125 | 37467976 | ID=Msa0404760-mRNA-1:cds;Parent=Msa0404760-mRNA-1 |
| chr3_2 | CDS | 37467756 | 37467890 | 37467756 | ID=Msa0404760-mRNA-1:cds;Parent=Msa0404760-mRNA-1 |
| chr3_2 | CDS | 37467563 | 37467667 | 37467563 | ID=Msa0404760-mRNA-1:cds;Parent=Msa0404760-mRNA-1 |
| chr3_2 | three_prime_UTR | 37466987 | 37467562 | 37466987 | ID=Msa0404760-mRNA-1:three_prime_utr;Parent=Msa0404760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
