AlfalfaGEDB | Msa0561560

M. sativa cultivar zhongmu-4 / Msa0561560

KEGG: K02541
GO: GO:0000347 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901576
PFAM: PF14551.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0561560	XP_003608493.1	99.741	773	2	0	1	773	1	773	0.0	1587

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0561560	sp\|Q9FL33\|MCM3_ARATH	74.716	791	166	11	1	772	1	776	0.0	1182

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0561560	G7JDY9	99.741	773	2	0	1	773	1	773	0.0	1587

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003080	Msa0561560	0.817614	3.009765e-52	-8.615850e-47
Msa0005020	Msa0561560	0.825282	5.102690e-54	-8.615850e-47
Msa0006840	Msa0561560	0.818968	1.486211e-52	-8.615850e-47
Msa0015150	Msa0561560	0.801293	9.640688e-49	-8.615850e-47
Msa0015570	Msa0561560	0.879241	1.463057e-69	-8.615850e-47
Msa0016040	Msa0561560	0.849422	3.267968e-60	-8.615850e-47
Msa0016530	Msa0561560	0.858609	7.325178e-63	-8.615850e-47
Msa0018920	Msa0561560	0.870978	9.693008e-67	-8.615850e-47
Msa0019930	Msa0561560	0.838622	2.577640e-57	-8.615850e-47
Msa0020540	Msa0561560	0.900542	6.598523e-78	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0561560	MtrunA17_Chr4g0052131	99.741	773	2	0	1	773	1	773	0.0	1587
Msa0561560	MtrunA17_Chr7g0269941	35.251	678	350	13	9	643	12	643	4.65e-117	370
Msa0561560	MtrunA17_Chr4g0035581	33.538	650	355	12	28	653	153	749	1.61e-108	350
Msa0561560	MtrunA17_Chr4g0068511	34.837	643	377	12	5	638	210	819	6.60e-101	332
Msa0561560	MtrunA17_Chr8g0381871	31.034	754	399	17	15	707	20	713	4.19e-100	328
Msa0561560	MtrunA17_Chr2g0296441	30.362	718	391	14	14	679	20	680	3.74e-98	322
Msa0561560	MtrunA17_Chr4g0065401	34.331	635	339	15	38	641	61	648	1.40e-96	316
Msa0561560	MtrunA17_Chr7g0263661	34.401	593	313	17	109	649	144	712	7.51e-90	300
Msa0561560	MtrunA17_Chr2g0279361	32.386	528	301	11	117	635	128	608	4.42e-70	243

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0561560	AT5G46280.1	74.716	791	166	11	1	772	1	776	0.0	1182
Msa0561560	AT5G46280.3	81.498	654	109	6	1	652	1	644	0.0	1101
Msa0561560	AT5G46280.2	81.876	629	102	6	1	627	1	619	0.0	1060
Msa0561560	AT5G46280.4	81.724	580	94	6	1	578	1	570	0.0	978
Msa0561560	AT4G02060.2	36.418	670	334	13	15	641	16	636	3.25e-121	380
Msa0561560	AT4G02060.1	36.418	670	334	13	15	641	16	636	3.25e-121	380
Msa0561560	AT2G16440.1	34.709	654	357	10	11	642	143	748	1.51e-110	356
Msa0561560	AT2G07690.1	36.133	631	321	15	41	639	60	640	8.14e-105	338
Msa0561560	AT2G07690.2	36.089	629	322	15	41	639	60	638	5.68e-104	336
Msa0561560	AT1G44900.1	33.643	645	388	9	3	638	210	823	1.26e-103	340

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Find 235 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAAAGGCAGTGTGAA+TGG	0.514455	4_1:+61126051	Msa0561560:CDS
AAACGTTCATTTCAGGGAGC+AGG	0.473983	4_1:+61129788	Msa0561560:intron
AAACTAAGAACTGTTGAGAG+GGG	0.707079	4_1:-61129974	None:intergenic
AAATAAGCATCGTTCATTGT+TGG	0.421392	4_1:-61130262	None:intergenic
AAATATAACAGAATGCTACA+TGG	0.553194	4_1:+61127415	Msa0561560:CDS
AAATGGGCTCGCGTTGTGGC+GGG	0.447053	4_1:-61123777	None:intergenic
AACAGCAGGTTGGGCTTCTG+AGG	0.561016	4_1:-61128990	None:intergenic
AACAGTGGATATCATAGCAG+AGG	0.624532	4_1:+61125957	Msa0561560:CDS
AACGAAATCGATGCATACGC+AGG	0.631812	4_1:-61127226	None:intergenic
AACGAGCATTAAGTGAGGCA+TGG	0.639848	4_1:-61126921	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATCTTGATCTAAGAAATCA+AGG	-	chr4_1:61123962-61123981	None:intergenic	30.0%
AACAAAATCGAATTCTACAG+TGG	-	chr4_1:61124208-61124227	None:intergenic	30.0%
AATGATTGCATATACTCACT+TGG	-	chr4_1:61124274-61124293	None:intergenic	30.0%
ATTACTCCTTGATTAGGATT+AGG	+	chr4_1:61124606-61124625	Msa0561560:intron	30.0%
GTCTGTAATGTTCTGTAATT+AGG	-	chr4_1:61125112-61125131	None:intergenic	30.0%
CAATAATTACCGACCAAATT+TGG	-	chr4_1:61125311-61125330	None:intergenic	30.0%
ACCCAAAAGAATCAAATGAA+CGG	-	chr4_1:61125374-61125393	None:intergenic	30.0%
ACTGACTAAATGTTTATTGC+AGG	+	chr4_1:61125822-61125841	Msa0561560:intron	30.0%
AGCTATTGTTGGGATATATA+AGG	+	chr4_1:61126017-61126036	Msa0561560:CDS	30.0%
GTTTCTGTTCAATAAAGCAA+GGG	-	chr4_1:61126120-61126139	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	61123759	61130365	61123759	ID=Msa0561560;Name=Msa0561560
chr4_1	mRNA	61123759	61130365	61123759	ID=Msa0561560-mRNA-1;Parent=Msa0561560;Name=Msa0561560-mRNA-1;_AED=0.08;_eAED=0.08;_QI=156\|1\|1\|1\|0.93\|0.94\|17\|605\|773
chr4_1	exon	61123759	61123980	61123759	ID=Msa0561560-mRNA-1:exon:19147;Parent=Msa0561560-mRNA-1
chr4_1	exon	61124066	61124175	61124066	ID=Msa0561560-mRNA-1:exon:19148;Parent=Msa0561560-mRNA-1
chr4_1	exon	61124258	61124466	61124258	ID=Msa0561560-mRNA-1:exon:19149;Parent=Msa0561560-mRNA-1
chr4_1	exon	61125635	61125765	61125635	ID=Msa0561560-mRNA-1:exon:19150;Parent=Msa0561560-mRNA-1
chr4_1	exon	61125844	61126082	61125844	ID=Msa0561560-mRNA-1:exon:19151;Parent=Msa0561560-mRNA-1
chr4_1	exon	61126163	61126399	61126163	ID=Msa0561560-mRNA-1:exon:19152;Parent=Msa0561560-mRNA-1
chr4_1	exon	61126538	61126692	61126538	ID=Msa0561560-mRNA-1:exon:19153;Parent=Msa0561560-mRNA-1
chr4_1	exon	61126773	61126981	61126773	ID=Msa0561560-mRNA-1:exon:19154;Parent=Msa0561560-mRNA-1
chr4_1	exon	61127098	61127263	61127098	ID=Msa0561560-mRNA-1:exon:19155;Parent=Msa0561560-mRNA-1
chr4_1	exon	61127341	61127543	61127341	ID=Msa0561560-mRNA-1:exon:19156;Parent=Msa0561560-mRNA-1
chr4_1	exon	61127750	61127809	61127750	ID=Msa0561560-mRNA-1:exon:19157;Parent=Msa0561560-mRNA-1
chr4_1	exon	61127896	61127985	61127896	ID=Msa0561560-mRNA-1:exon:19158;Parent=Msa0561560-mRNA-1
chr4_1	exon	61128539	61128711	61128539	ID=Msa0561560-mRNA-1:exon:19159;Parent=Msa0561560-mRNA-1
chr4_1	exon	61128958	61129029	61128958	ID=Msa0561560-mRNA-1:exon:19160;Parent=Msa0561560-mRNA-1
chr4_1	exon	61129133	61129274	61129133	ID=Msa0561560-mRNA-1:exon:19161;Parent=Msa0561560-mRNA-1
chr4_1	exon	61129552	61129653	61129552	ID=Msa0561560-mRNA-1:exon:19162;Parent=Msa0561560-mRNA-1
chr4_1	exon	61129803	61130365	61129803	ID=Msa0561560-mRNA-1:exon:19163;Parent=Msa0561560-mRNA-1
chr4_1	five_prime_UTR	61123759	61123914	61123759	ID=Msa0561560-mRNA-1:five_prime_utr;Parent=Msa0561560-mRNA-1
chr4_1	CDS	61123915	61123980	61123915	ID=Msa0561560-mRNA-1:cds;Parent=Msa0561560-mRNA-1
chr4_1	CDS	61124066	61124175	61124066	ID=Msa0561560-mRNA-1:cds;Parent=Msa0561560-mRNA-1
chr4_1	CDS	61124258	61124466	61124258	ID=Msa0561560-mRNA-1:cds;Parent=Msa0561560-mRNA-1
chr4_1	CDS	61125635	61125765	61125635	ID=Msa0561560-mRNA-1:cds;Parent=Msa0561560-mRNA-1
chr4_1	CDS	61125844	61126082	61125844	ID=Msa0561560-mRNA-1:cds;Parent=Msa0561560-mRNA-1
chr4_1	CDS	61126163	61126399	61126163	ID=Msa0561560-mRNA-1:cds;Parent=Msa0561560-mRNA-1
chr4_1	CDS	61126538	61126692	61126538	ID=Msa0561560-mRNA-1:cds;Parent=Msa0561560-mRNA-1
chr4_1	CDS	61126773	61126981	61126773	ID=Msa0561560-mRNA-1:cds;Parent=Msa0561560-mRNA-1
chr4_1	CDS	61127098	61127263	61127098	ID=Msa0561560-mRNA-1:cds;Parent=Msa0561560-mRNA-1
chr4_1	CDS	61127341	61127543	61127341	ID=Msa0561560-mRNA-1:cds;Parent=Msa0561560-mRNA-1
chr4_1	CDS	61127750	61127809	61127750	ID=Msa0561560-mRNA-1:cds;Parent=Msa0561560-mRNA-1
chr4_1	CDS	61127896	61127985	61127896	ID=Msa0561560-mRNA-1:cds;Parent=Msa0561560-mRNA-1
chr4_1	CDS	61128539	61128711	61128539	ID=Msa0561560-mRNA-1:cds;Parent=Msa0561560-mRNA-1
chr4_1	CDS	61128958	61129029	61128958	ID=Msa0561560-mRNA-1:cds;Parent=Msa0561560-mRNA-1
chr4_1	CDS	61129133	61129274	61129133	ID=Msa0561560-mRNA-1:cds;Parent=Msa0561560-mRNA-1
chr4_1	CDS	61129552	61129611	61129552	ID=Msa0561560-mRNA-1:cds;Parent=Msa0561560-mRNA-1
chr4_1	three_prime_UTR	61129612	61129653	61129612	ID=Msa0561560-mRNA-1:three_prime_utr;Parent=Msa0561560-mRNA-1
chr4_1	three_prime_UTR	61129803	61130365	61129803	ID=Msa0561560-mRNA-1:three_prime_utr;Parent=Msa0561560-mRNA-1

Gene Sequence

>Msa0561560

ATGGATTTGAGCGAAGAAGTTCGACAAGCTCACAAGCGAGAATTCCTTGATTTCTTAGATCAAGATATCGGAAAAAGCATTTACATGGACGAAATCAAAGCTCTAATCAACCACAAACGCCGCCGCTTAATCGTCAACATCTCCGATCTCCACAACTTCCGCGACTTAGGAAACAGGATTTTGAGAAATCCAAGTGAGTATATGCAATCATTTTGTGATGCGGTTACCGAAGTTGTTCGTGGTAGTGATCCAAAGTATTTGAAGGAAGGGGAACAAGTTCTCGTTGGATTTGAAGGTCCTTTTGTTTCTCGCCGAGTTACGCCGAGGGATCTTCTTTCTGAATTTATAGGTTCTATGGTTTGTGTCGAGGGCATTATCACTAAATGTTCTCTCGTAAGGCCAAAGGTTGTTAAAAGTGTTCATTTCTGCCCCACCACCGGAAGCTTCACAAGCCGCGATTATCGCGACATTACATCTAATTTGGGTTTGCCCACAGGATCTGTTTATCCCACAAGGGATGAAAGTGGCAACTTGCTTGTGACCGAGTATGGAATGTGCAAATACAAGGATCATCAAACCTTGTCCATGCAGGAAGTTCCTGAAAATTCTGCACCTGGTCAGCTCCCAAGAACAGTGGATATCATAGCAGAGGATGACCTCGTTGATTCTTGCAAGCCTGGCGATCGTGTAGCTATTGTTGGGATATATAAGGCTCTTCCAGGAAAAAGCAAAGGCAGTGTGAATGGTGTATTCAGGACTGTGCTCATAGCCAACAATGTATCTCTTCTCAACAAAGAGGCTAATGCTCCAATCTACAGCCCTGAAGACCTTAAAAACATAAAAAAGATAGCTGAAAGGGATGATACATTTGATCTGCTCGGTAATTCACTTGCACCTTCTATACATGGCCATTCTTGGATAAAGAAAGCAGTGATTTTATTGATGCTTGGTGGAGTGGAGAAGAACCTAAAGAATGGAACTCATTTGAGAGGTGACATTAATATGATGATGGTTGGTGATCCATCTGTTGCCAAGTCTCAACTCTTGAGAGCAATTATGAATATTGCTCCCTTAGCCATATCAACTACTGGTCGGGGTTCTTCTGGGGTTGGTTTGACAGCAGCAGTTACTTCAGATCAAGAAACAGGAGAAAGAAGGTTAGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGTGTTGTCTGCATTGATGAATTTGACAAAATGAATGATCAAGATCGTGTAGCTATACACGAAGTTATGGAACAGCAGACCGTAACTATTGCTAAAGCTGGGATCCATGCCTCACTTAATGCTCGTTGCAGTGTGGTGGCAGCTGCAAATCCCATATATGGAACTTATGATCGTTCACTGACTCCAACTAAAAATATTGGACTACCGGACTCTTTGCTTTCTCGATTTGATCTGTTGTTTATTGTGTTGGACCAAATGGATCCTGATATTGATCGCCAAATATCAGAGCACGTCCTGCGTATGCATCGATTTCGTTCGGCCATTGATGGAGGTGAGGCGGCACATGATGGGAGTGCAAGATATGGAAGAGAAGAGGAAGCTGATACTGAATCATCTGTCTTTGTCAAATATAACAGAATGCTACATGGAAAGAAAACTGACAGAGGTCGCAAACGCGATACACTTACGATTAAGTTCCTGAAAAAGTATATCCATTATGCTAAGCATAGGATTCAACCTGACCTGACCGACGAGGCATCTGAGCAGATTGCCGCAGCATACGCTGAGCTCAGGAATGCAAAGTCAAATGCGAAGACTGGAGGAACACTTCCAATAACTGCCAGAACTTTAGAAACTATAATACGTCTCTCAACTGCTCATGCCAAATTGAAGTTGAGCAGAAAGGTTTCAAAGTCTGATGTTGATGCTGCGTTGAAGATTCTGAATTTTGCAATATATCATAAAGAACTGACAGAAATGGATGAGCGTGAAGAAGAGAGGGAAAGGGAACTGGAGAGGAAGCGTAGGGCCGACGGTGAAAATGATGGTCCTGACCGTGGTTCTAAAAGTAAAAGAAACTCAACATCAGATGCCATGGAAGTAGACGATACCTCAGAAGCCCAACCTGCTGTTGGTCTCACTCCTGAAAGAATTGAAGCATTCAATTCCCTATTTGGTCAGCATATGCGCTCCAACCGTTTGGATCAAATACCTATTGCAGACATAGAGGATGTTATCAATAGAGGGGCAGGTTCCACTTACAGCTCTGCAGATGTATTGCTCCTGTTAGAGAAGTTGCAAGAAGACAATAGATTAATGATAGCTGATGGAATAGTGCATATGGTATCATAA

Protein sequence

>Msa0561560

MDLSEEVRQAHKREFLDFLDQDIGKSIYMDEIKALINHKRRRLIVNISDLHNFRDLGNRILRNPSEYMQSFCDAVTEVVRGSDPKYLKEGEQVLVGFEGPFVSRRVTPRDLLSEFIGSMVCVEGIITKCSLVRPKVVKSVHFCPTTGSFTSRDYRDITSNLGLPTGSVYPTRDESGNLLVTEYGMCKYKDHQTLSMQEVPENSAPGQLPRTVDIIAEDDLVDSCKPGDRVAIVGIYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIHGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRQISEHVLRMHRFRSAIDGGEAAHDGSARYGREEEADTESSVFVKYNRMLHGKKTDRGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASEQIAAAYAELRNAKSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVDAALKILNFAIYHKELTEMDEREEERERELERKRRADGENDGPDRGSKSKRNSTSDAMEVDDTSEAQPAVGLTPERIEAFNSLFGQHMRSNRLDQIPIADIEDVINRGAGSTYSSADVLLLLEKLQEDNRLMIADGIVHMVS*