AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0615630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0615630 MtrunA17_Chr4g0052131 99.353 773 5 0 1 773 1 773 0.0 1580
Msa0615630 MtrunA17_Chr7g0269941 35.103 678 351 13 9 643 12 643 1.82e-116 368
Msa0615630 MtrunA17_Chr4g0035581 33.538 650 355 12 28 653 153 749 1.01e-108 351
Msa0615630 MtrunA17_Chr4g0068511 34.837 643 377 12 5 638 210 819 2.83e-101 333
Msa0615630 MtrunA17_Chr8g0381871 31.072 737 391 17 28 707 37 713 2.34e-99 326
Msa0615630 MtrunA17_Chr2g0296441 30.223 718 392 14 14 679 20 680 2.78e-97 319
Msa0615630 MtrunA17_Chr4g0065401 34.331 635 339 15 38 641 61 648 2.56e-96 315
Msa0615630 MtrunA17_Chr7g0263661 34.401 593 313 17 109 649 144 712 5.99e-90 300
Msa0615630 MtrunA17_Chr2g0279361 32.386 528 301 11 117 635 128 608 3.72e-70 243
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0615630 AT5G46280.1 74.300 786 178 8 1 772 1 776 0.0 1179
Msa0615630 AT5G46280.3 81.498 654 109 6 1 652 1 644 0.0 1100
Msa0615630 AT5G46280.2 81.876 629 102 6 1 627 1 619 0.0 1058
Msa0615630 AT5G46280.4 81.724 580 94 6 1 578 1 570 0.0 978
Msa0615630 AT4G02060.2 36.527 668 331 14 17 641 19 636 4.91e-121 380
Msa0615630 AT4G02060.1 36.527 668 331 14 17 641 19 636 4.91e-121 380
Msa0615630 AT2G16440.1 34.709 654 357 10 11 642 143 748 6.47e-111 357
Msa0615630 AT2G07690.1 35.994 639 326 16 33 639 53 640 1.07e-104 338
Msa0615630 AT2G07690.2 35.950 637 327 16 33 639 53 638 5.74e-104 335
Msa0615630 AT1G44900.1 33.643 645 388 9 3 638 210 823 6.06e-104 341
Msa0615630 AT1G44900.2 33.643 645 388 9 3 638 208 821 6.95e-104 341
Msa0615630 AT5G44635.1 31.016 748 389 16 19 701 29 714 2.87e-97 320
Msa0615630 AT5G44635.2 31.016 748 389 16 19 701 29 714 6.59e-97 320
Msa0615630 AT3G09660.3 33.048 584 330 12 106 649 143 705 4.36e-91 303
Msa0615630 AT3G09660.2 33.219 584 332 11 106 649 143 708 5.25e-91 302
Msa0615630 AT3G09660.1 33.219 584 332 11 106 649 143 708 1.09e-90 302
Msa0615630 AT2G14050.1 32.151 451 256 7 190 635 204 609 1.38e-64 228
Msa0615630 AT2G14050.2 32.151 451 256 7 190 635 204 609 1.71e-64 227

Find 234 sgRNAs with CRISPR-Local

Find 452 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGACACTCCCTGTCTTTA+TGG 0.060568 4_2:-65083894 Msa0615630:three_prime_UTR
TCGCGACATTACATCTAATT+TGG 0.103330 4_2:-65088197 Msa0615630:CDS
ATATTTATAACTGAATTATT+TGG 0.125781 4_2:-65083968 Msa0615630:three_prime_UTR
ACTACTGGTCGGGGTTCTTC+TGG 0.126682 4_2:-65087282 Msa0615630:CDS
GATCTTCTTTCTGAATTTAT+AGG 0.193496 4_2:-65089498 Msa0615630:CDS
GAAGCATTCAATTCCCTATT+TGG 0.198726 4_2:-65084774 Msa0615630:CDS
GCAGGACGTGCTCTGATATT+TGG 0.229377 4_2:+65086703 None:intergenic
TTTCTTAGGCATATAAATTT+GGG 0.233539 4_2:-65083689 Msa0615630:three_prime_UTR
CTCGCAGAATCCTCGGAAAA+TGG 0.246284 4_2:-65090020 Msa0615630:exon
TTCTGAATTTATAGGTTCTA+TGG 0.247965 4_2:-65089490 Msa0615630:CDS
CAATATCTCAACAAAGATTC+TGG 0.251429 4_2:-65084271 Msa0615630:three_prime_UTR
TGACCCGCACTATCCTATTT+TGG 0.252568 4_2:+65083552 None:intergenic
CTTTCTGCTCAACTTCAATT+TGG 0.261333 4_2:+65085948 None:intergenic
CTACTGGTCGGGGTTCTTCT+GGG 0.266254 4_2:-65087281 Msa0615630:CDS
CTTCTATACATGGCCATTCT+TGG 0.268321 4_2:-65087605 Msa0615630:CDS
GCCACTTACAGTTCCATATA+TGG 0.269512 4_2:+65086943 None:intergenic
TCAAATGAGTTCCATTCTTT+AGG 0.279773 4_2:+65087535 None:intergenic
TCTAAAGTTCTGGCAGTTAT+TGG 0.289117 4_2:+65086000 None:intergenic
TGGCAGTTGAAAGACCTTTC+AGG 0.304074 4_2:+65084889 None:intergenic
CGCGACATTACATCTAATTT+GGG 0.314962 4_2:-65088196 Msa0615630:CDS
AGCGCATATGCTGACCAAAT+AGG 0.328388 4_2:+65084760 None:intergenic
TATTTATAACTGAATTATTT+GGG 0.338117 4_2:-65083967 Msa0615630:three_prime_UTR
TATTATAGTTTCTAAAGTTC+TGG 0.340428 4_2:+65085990 None:intergenic
GCTATGATATCCACTGTTCT+TGG 0.342887 4_2:+65087956 None:intergenic
GCAGCTGCAAATCCCATATA+TGG 0.344979 4_2:-65086956 Msa0615630:CDS
AACTTGCTTGTGACCGAGTA+TGG 0.352631 4_2:-65088052 Msa0615630:CDS
AGAAGAGAGGGAAAGGGAAC+TGG 0.357571 4_2:-65085286 Msa0615630:CDS
GAATCCTATGCTTAGCATAA+TGG 0.359551 4_2:+65086410 None:intergenic
GTCTCTTACTAGACCAAAAT+AGG 0.359748 4_2:-65083565 Msa0615630:three_prime_UTR
TCCCCTTCCTTCAAATACTT+TGG 0.360134 4_2:+65089576 None:intergenic
CGATTAAGCGGCGGCGTTTG+TGG 0.368234 4_2:+65089797 None:intergenic
CGATTTCGTTCTGCCATTGA+TGG 0.369492 4_2:-65086672 Msa0615630:CDS
GATATTTGGCGATCAATATC+AGG 0.372045 4_2:+65086717 None:intergenic
AGATGTATTGCTCCTGTTAG+AGG 0.373970 4_2:-65084658 Msa0615630:intron
GGCGATCGTGTAGCTATTGT+TGG 0.378452 4_2:-65087902 Msa0615630:CDS
CTCGTTGATTCTTGCAAGCC+TGG 0.380513 4_2:-65087923 Msa0615630:CDS
CAAGTTCTCGTTGGATTTGA+AGG 0.381551 4_2:-65089552 Msa0615630:CDS
TGATCTGTTGTTTATTGTGT+TGG 0.388371 4_2:-65086751 Msa0615630:CDS
TTAGAGATAGGGCATTGTTT+TGG 0.390127 4_2:+65090139 None:intergenic
ACTGAATTATTTGGGTCATA+AGG 0.393904 4_2:-65083959 Msa0615630:three_prime_UTR
GCTCGCGTTGTGGCGGGAAA+TGG 0.398235 4_2:+65090172 None:intergenic
CTGCTTTCTTTATCCAAGAA+TGG 0.398574 4_2:+65087592 None:intergenic
CTATGATATCCACTGTTCTT+GGG 0.402129 4_2:+65087957 None:intergenic
GGGATATATAAGGCTCTTCC+AGG 0.405737 4_2:-65087881 Msa0615630:CDS
TCAAAAGATGTACCTCTAAC+AGG 0.409245 4_2:+65084646 None:intergenic
ACCCCGACCAGTAGTTGATA+TGG 0.413616 4_2:+65087290 None:intergenic
GCTTGTGAAGCTTCCGGTGG+TGG 0.414230 4_2:+65088228 None:intergenic
CAAGAATGGCCATGTATAGA+AGG 0.416117 4_2:+65087606 None:intergenic
GCAGTGTGAATGGTGTATTC+AGG 0.418297 4_2:-65087847 Msa0615630:intron
GCATCCTCTATGTCTGCAAT+AGG 0.418566 4_2:+65084717 None:intergenic
AAATAAGCATCGTTCATTGT+TGG 0.421392 4_2:+65083637 None:intergenic
CTTGTGAAGCTTCCGGTGGT+GGG 0.424475 4_2:+65088229 None:intergenic
TCTAATTTGGGTTTGCCCAC+AGG 0.425040 4_2:-65088184 Msa0615630:CDS
GTTTATTGTGTTGGACCAAA+TGG 0.429107 4_2:-65086742 Msa0615630:CDS
GCGCATATGCTGACCAAATA+GGG 0.430181 4_2:+65084761 None:intergenic
AGGTCTTCAGGGCTGTAGAT+TGG 0.430461 4_2:+65087693 None:intergenic
AGCCATATCAACTACTGGTC+GGG 0.431922 4_2:-65087292 Msa0615630:CDS
AGTGAGACCAACAGCAGGTT+GGG 0.432976 4_2:+65084912 None:intergenic
CCACTTACAGTTCCATATAT+GGG 0.434161 4_2:+65086944 None:intergenic
GTTACTTCAGATCAAGAAAC+AGG 0.437032 4_2:-65087240 Msa0615630:intron
TCATAAAGAACTGACAGAAA+TGG 0.437741 4_2:-65085319 Msa0615630:CDS
GTTGAGAAGAGATACATTGT+TGG 0.438233 4_2:+65087731 None:intergenic
GAGAGAGAGAGTGGCGATGG+AGG 0.440460 4_2:+65090083 None:intergenic
GCATATGCGCTCCAACCGTT+TGG 0.444476 4_2:-65084748 Msa0615630:CDS
GTACTGTAAACAACGCTTGT+AGG 0.444699 4_2:-65083841 Msa0615630:three_prime_UTR
CATGATGGGAGTGCTAGATA+TGG 0.445175 4_2:-65086559 Msa0615630:CDS
ATAAAACATGCCCAAAGAAA+AGG 0.449213 4_2:+65083812 None:intergenic
CTCCACAACTTCCGCGACTT+AGG 0.449467 4_2:-65089760 Msa0615630:CDS
ACTGTTCTTGGGAGCTGACC+AGG 0.451812 4_2:+65087968 None:intergenic
GGTTCTATGGTTTGTGTCGA+GGG 0.452369 4_2:-65089477 Msa0615630:CDS
GGTCGGGGTTCTTCTGGGGT+TGG 0.454303 4_2:-65087276 Msa0615630:CDS
ATCGCGGCTTGTGAAGCTTC+CGG 0.460196 4_2:+65088222 None:intergenic
AGCGTGAAGAAGAGAGGGAA+AGG 0.461495 4_2:-65085293 Msa0615630:CDS
ACCGTAACTATTGCTAAAGC+TGG 0.461797 4_2:-65087016 Msa0615630:CDS
GCGGGAAATGGAGTATGATT+TGG 0.464387 4_2:+65090184 None:intergenic
GTAATATCACCTCGTCGGTC+AGG 0.470980 4_2:+65086380 None:intergenic
ATCACCTCGTCGGTCAGGTC+AGG 0.472355 4_2:+65086385 None:intergenic
CACAGATGAGGGAAACATAT+AGG 0.473523 4_2:+65083781 None:intergenic
AAACGTTCATTTCAGGGAGC+AGG 0.473983 4_2:-65084109 Msa0615630:intron
AATATCTCAACAAAGATTCT+GGG 0.475849 4_2:-65084270 Msa0615630:three_prime_UTR
AGCTATTGTTGGGATATATA+AGG 0.475943 4_2:-65087891 Msa0615630:CDS
CACTCATAGGTTCTCTCGTA+AGG 0.476726 4_2:-65088282 Msa0615630:intron
CATCGTTCTCGCAGAATCCT+CGG 0.478498 4_2:-65090027 Msa0615630:five_prime_UTR
CCGCAGCATACGCTGAGCTC+AGG 0.478922 4_2:-65086145 Msa0615630:CDS
TGTAGCTATACACGAAGTTA+TGG 0.479537 4_2:-65087047 Msa0615630:CDS
AAATGAGCTCGCGTTGTGGC+GGG 0.484352 4_2:+65090166 None:intergenic
GCAGGTGAGGCGGCACATGA+TGG 0.487147 4_2:-65086574 Msa0615630:intron
ACTTCCGCGACTTAGGAAAC+AGG 0.488263 4_2:-65089753 Msa0615630:intron
GATCAATATCAGGATCCATT+TGG 0.488984 4_2:+65086727 None:intergenic
GAGAAAGAAGGTTAGAAGCT+GGG 0.489696 4_2:-65087138 Msa0615630:CDS
AAGAATGGAACTCATTTGAG+AGG 0.490629 4_2:-65087531 Msa0615630:CDS
CCCTTAGCCATATCAACTAC+TGG 0.490846 4_2:-65087297 Msa0615630:CDS
GACATAACAAATGCAATGCT+TGG 0.491795 4_2:-65083992 Msa0615630:three_prime_UTR
TGAAATAAGTGTTGATAATG+TGG 0.492340 4_2:-65083606 Msa0615630:three_prime_UTR
CGGCTCTCCAACTGAAGGTA+TGG 0.494610 4_2:+65083739 None:intergenic
GGAGAAAGAAGGTTAGAAGC+TGG 0.494652 4_2:-65087139 Msa0615630:CDS
GAGGATTCTGCGAGAACGAT+GGG 0.499571 4_2:+65090029 None:intergenic
ATAGAGGATGCTATCAATAG+AGG 0.500047 4_2:-65084705 Msa0615630:CDS
TGCTTATCTACCTCCATCAA+TGG 0.500206 4_2:+65086659 None:intergenic
TTTCTTGCCATACCTTCAGT+TGG 0.502852 4_2:-65083746 Msa0615630:three_prime_UTR
TGGATGAGCGTGAAGAAGAG+AGG 0.506377 4_2:-65085299 Msa0615630:CDS
GCAGCGAAATCCATAAAGAC+AGG 0.507286 4_2:+65083884 None:intergenic
ATCCAAAGTATTTGAAGGAA+GGG 0.508850 4_2:-65089578 Msa0615630:CDS
TACTGGTCGGGGTTCTTCTG+GGG 0.512239 4_2:-65087280 Msa0615630:CDS
ACCAGTAGTTGATATGGCTA+AGG 0.512348 4_2:+65087296 None:intergenic
CCCAGCTTTAGCAATAGTTA+CGG 0.512480 4_2:+65087015 None:intergenic
GTGGCGATGGAGGAAGAAAG+AGG 0.513180 4_2:+65090093 None:intergenic
TTCCTAAGTCGCGGAAGTTG+TGG 0.513194 4_2:+65089758 None:intergenic
CAATAGGTATTTGATCCAAA+CGG 0.513204 4_2:+65084733 None:intergenic
CGAGGATTCTGCGAGAACGA+TGG 0.513752 4_2:+65090028 None:intergenic
TAGTGACATTAATATGATGA+TGG 0.514077 4_2:-65087376 Msa0615630:CDS
AAAAGCAAAGGCAGTGTGAA+TGG 0.514455 4_2:-65087857 Msa0615630:CDS
AGGTTCTATGGTTTGTGTCG+AGG 0.516449 4_2:-65089478 Msa0615630:CDS
GTGGGTTTGTCCACCTTACC+CGG 0.518657 4_2:-65083587 Msa0615630:three_prime_UTR
AGCTGATGGAATAGTGCATA+TGG 0.519463 4_2:-65084318 Msa0615630:CDS
TGCTAGATATGGAAGAGAAG+AGG 0.521723 4_2:-65086548 Msa0615630:CDS
GATCCAAAGTATTTGAAGGA+AGG 0.524402 4_2:-65089579 Msa0615630:CDS
CTGTTGGTCTCACTCCTGAA+AGG 0.524781 4_2:-65084903 Msa0615630:intron
GTGGAGAAGAACCTAAAGAA+TGG 0.527656 4_2:-65087546 Msa0615630:CDS
TACATCTGCAGAGCTGTAAG+TGG 0.528161 4_2:+65084674 None:intergenic
GTTCATTTCTGCCCCACCAC+CGG 0.530449 4_2:-65088241 Msa0615630:CDS
GTAACTCGGCGAGAAACAAA+AGG 0.531202 4_2:+65089528 None:intergenic
GCGATCGTGTAGCTATTGTT+GGG 0.531638 4_2:-65087901 Msa0615630:CDS
TCACTTGCACCTTCTATACA+TGG 0.532357 4_2:-65087615 Msa0615630:CDS
GATCTTGTGATTACCCTTGT+GGG 0.532708 4_2:+65088151 None:intergenic
GTATTTGCACATTCCATACT+CGG 0.534916 4_2:+65088039 None:intergenic
CGAAACTAAGAACTGTTGAG+AGG 0.535724 4_2:+65083923 None:intergenic
TCATCAAACCTTGTCCATGC+AGG 0.536771 4_2:-65088011 Msa0615630:CDS
AGTTGAGACTTGGCAACAGA+TGG 0.538574 4_2:+65087345 None:intergenic
TTGTGCAACCGCACAGATGA+GGG 0.538643 4_2:+65083770 None:intergenic
TAGAGGATGCTATCAATAGA+GGG 0.539121 4_2:-65084704 Msa0615630:CDS
TAGTGATCCAAAGTATTTGA+AGG 0.539186 4_2:-65089583 Msa0615630:CDS
TTTATTGATGCTTGGTGGAG+TGG 0.540439 4_2:-65087565 Msa0615630:CDS
GTCGCGGAAGTTGTGGAGAT+CGG 0.540703 4_2:+65089765 None:intergenic
TGCTCTCAAGAGTTGAGACT+TGG 0.546404 4_2:+65087335 None:intergenic
AGAGCCGTGCTATGTGTTGA+AGG 0.546481 4_2:-65083723 Msa0615630:three_prime_UTR
GGATGAGCGTGAAGAAGAGA+GGG 0.547538 4_2:-65085298 Msa0615630:CDS
AAATATAACAGAATGCTACA+TGG 0.553194 4_2:-65086496 Msa0615630:CDS
CAGGTGAGGCGGCACATGAT+GGG 0.554148 4_2:-65086573 Msa0615630:CDS
GCGGTTACCGAAGTTGTTCG+TGG 0.554563 4_2:-65089606 Msa0615630:CDS
ACAATAGCTACACGATCGCC+AGG 0.554581 4_2:+65087905 None:intergenic
AGGAACTTCCTGCATGGACA+AGG 0.555183 4_2:+65088003 None:intergenic
AGAGGGAAAGGGAACTGGAG+AGG 0.555234 4_2:-65085281 Msa0615630:CDS
GTCTAGTAAGAGACCGGGTA+AGG 0.555348 4_2:+65083574 None:intergenic
AGAAAGAAGGTTAGAAGCTG+GGG 0.555415 4_2:-65087137 Msa0615630:CDS
CAAATTGAAGTTGAGCAGAA+AGG 0.555939 4_2:-65085947 Msa0615630:intron
GAAATGAGCTCGCGTTGTGG+CGG 0.558817 4_2:+65090165 None:intergenic
AACAGCAGGTTGGGCTTCTG+AGG 0.561016 4_2:+65084921 None:intergenic
AATAGATTAATGATAGCTGA+TGG 0.561185 4_2:-65084332 Msa0615630:CDS
TGTTTATTGCAGGATGAAAG+TGG 0.562229 4_2:-65088076 Msa0615630:intron
GAAGATCCCTCGGCGTAACT+CGG 0.562743 4_2:+65089514 None:intergenic
GAAGGGGAACAAGTTCTCGT+TGG 0.563161 4_2:-65089561 Msa0615630:CDS
CAGGATCTGTTTATCCCACA+AGG 0.565225 4_2:-65088165 Msa0615630:CDS
AATACCTATTGCAGACATAG+AGG 0.567260 4_2:-65084721 Msa0615630:CDS
GCTGGCTTTGTGCAGACTGG+AGG 0.568451 4_2:-65086030 Msa0615630:intron
AATGATTGCATATACTCACT+TGG 0.571052 4_2:+65089636 None:intergenic
TAGCTCAACATCAGATGCCA+TGG 0.571126 4_2:-65084956 Msa0615630:CDS
TGAGGTATCGTCTACTTCCA+TGG 0.571458 4_2:+65084939 None:intergenic
GGTATTAGCAGATAGCTCTC+TGG 0.571610 4_2:+65084023 None:intergenic
GTTCCTGAAAATTCTGCACC+TGG 0.572249 4_2:-65087986 Msa0615630:CDS
AATCGAGAAAGCAAAGAGTC+CGG 0.573316 4_2:+65086774 None:intergenic
GTATGGAATGTGCAAATACA+AGG 0.573655 4_2:-65088035 Msa0615630:CDS
AGGGCTGACGGTGAAAATGA+TGG 0.574482 4_2:-65085252 Msa0615630:CDS
GCGTGAAGAAGAGAGGGAAA+GGG 0.575235 4_2:-65085292 Msa0615630:CDS
GCCATATCAACTACTGGTCG+GGG 0.576917 4_2:-65087291 Msa0615630:CDS
TCCAAAGTATTTGAAGGAAG+GGG 0.578778 4_2:-65089577 Msa0615630:CDS
AAGGTTAGAAGCTGGGGCAA+TGG 0.578812 4_2:-65087131 Msa0615630:CDS
GACATTAATATGATGATGGT+TGG 0.581184 4_2:-65087372 Msa0615630:CDS
ATCACTACCACGAACAACTT+CGG 0.581462 4_2:+65089599 None:intergenic
GAAACTAAGAACTGTTGAGA+GGG 0.582569 4_2:+65083924 None:intergenic
TTCTTAGGCATATAAATTTG+GGG 0.583309 4_2:-65083688 Msa0615630:three_prime_UTR
GGGAACTGGAGAGGAAGCGT+AGG 0.584238 4_2:-65085272 Msa0615630:CDS
GAAATAAGTGTTGATAATGT+GGG 0.585734 4_2:-65083605 Msa0615630:three_prime_UTR
GAGAGGAAGCGTAGGGCTGA+CGG 0.585761 4_2:-65085264 Msa0615630:CDS
ATTGTGCAACCGCACAGATG+AGG 0.588867 4_2:+65083769 None:intergenic
AGGTATTTGATCCAAACGGT+TGG 0.589006 4_2:+65084737 None:intergenic
AACGAAATCGATGCATACGC+AGG 0.589498 4_2:+65086685 None:intergenic
TCAGAAGCCCAACCTGCTGT+TGG 0.593759 4_2:-65084919 Msa0615630:CDS
TAGCCATATCAACTACTGGT+CGG 0.594899 4_2:-65087293 Msa0615630:CDS
CCGTAACTATTGCTAAAGCT+GGG 0.595027 4_2:-65087015 Msa0615630:CDS
AGACCAAAATAGGATAGTGC+GGG 0.595297 4_2:-65083555 None:intergenic
TTTCGTTCTGCCATTGATGG+AGG 0.597336 4_2:-65086669 Msa0615630:intron
AATTCAGAAAGAAGATCCCT+CGG 0.598017 4_2:+65089504 None:intergenic
CCAGTAGTTGATATGGCTAA+GGG 0.599324 4_2:+65087297 None:intergenic
TTGTGAAGCTTCCGGTGGTG+GGG 0.601653 4_2:+65088230 None:intergenic
CGGGAAATGAGCTCGCGTTG+TGG 0.602435 4_2:+65090162 None:intergenic
GGATCTTGTGATTACCCTTG+TGG 0.602488 4_2:+65088150 None:intergenic
AGAATGGAACTCATTTGAGA+GGG 0.605684 4_2:-65087530 Msa0615630:intron
GATGATACATTTGATCTGCT+CGG 0.610870 4_2:-65087642 Msa0615630:CDS
TGTATCTCTTCTCAACAAAG+AGG 0.611474 4_2:-65087724 Msa0615630:CDS
ATATCCATTATGCTAAGCAT+AGG 0.611548 4_2:-65086414 Msa0615630:CDS
AGGTTCTCTCGTAAGGCCAA+AGG 0.615602 4_2:-65088275 Msa0615630:CDS
GCTGCTAGGGAGACTTGACA+AGG 0.615611 4_2:-65084082 Msa0615630:three_prime_UTR
TAGACCAAAATAGGATAGTG+CGG 0.616043 4_2:-65083556 Msa0615630:three_prime_UTR
TAGTAAGAGACCGGGTAAGG+TGG 0.616229 4_2:+65083577 None:intergenic
GAGTGAGACCAACAGCAGGT+TGG 0.616359 4_2:+65084911 None:intergenic
ACAACCTTCAACACATAGCA+CGG 0.617171 4_2:+65083719 None:intergenic
TTCTCGCCGAGTTACGCCGA+GGG 0.617425 4_2:-65089520 Msa0615630:CDS
TCAGGAGTGAGACCAACAGC+AGG 0.620390 4_2:+65084907 None:intergenic
TATCTGCTAATACCTCATCA+AGG 0.621978 4_2:-65084014 Msa0615630:three_prime_UTR
AACAGTGGATATCATAGCAG+AGG 0.624532 4_2:-65087951 Msa0615630:CDS
GAATGCAAAGTCAAATGCGA+AGG 0.628643 4_2:-65086123 Msa0615630:intron
CATTTGTTATGTCCTTGATG+AGG 0.632832 4_2:+65084002 None:intergenic
GGAACTGGAGAGGAAGCGTA+GGG 0.634871 4_2:-65085271 Msa0615630:CDS
TGTGGGATAAACAGATCCTG+TGG 0.635018 4_2:+65088168 None:intergenic
CAGCGAAATCCATAAAGACA+GGG 0.635481 4_2:+65083885 None:intergenic
TAATGCTCGTTGCAGTGTGG+TGG 0.636953 4_2:-65086978 Msa0615630:CDS
CGAACCTGTTTCCTAAGTCG+CGG 0.638069 4_2:+65089749 None:intergenic
AACGAGCATTAAGTGAGGCA+TGG 0.639848 4_2:+65086990 None:intergenic
TATTAGTAATATCACCTCGT+CGG 0.642234 4_2:+65086375 None:intergenic
CGGAGATGTTGACGATTAAG+CGG 0.642528 4_2:+65089785 None:intergenic
ACTTATCAATGCAGGTGAGG+CGG 0.643335 4_2:-65086584 Msa0615630:intron
ATATGTTTCCCTCATCTGTG+CGG 0.653275 4_2:-65083778 Msa0615630:three_prime_UTR
ATGTAATGTCGCGATAATCG+CGG 0.653688 4_2:+65088206 None:intergenic
CAGTACACATGAAAACAAGA+CGG 0.664570 4_2:+65083858 None:intergenic
GCAATGGTTCTTGCTGACAG+AGG 0.666936 4_2:-65087115 Msa0615630:CDS
TAGCACGGCTCTCCAACTGA+AGG 0.667375 4_2:+65083734 None:intergenic
GTGGGATAAACAGATCCTGT+GGG 0.670399 4_2:+65088169 None:intergenic
GCGGCTTGTGAAGCTTCCGG+TGG 0.672913 4_2:+65088225 None:intergenic
TGGTCAGCTCCCAAGAACAG+TGG 0.674225 4_2:-65087966 Msa0615630:CDS
GAAAATGATGGTCCTGACCA+TGG 0.674466 4_2:-65085240 Msa0615630:CDS
TTTCTCGCCGAGTTACGCCG+AGG 0.678265 4_2:-65089521 Msa0615630:CDS
AGGAAGAAAGAGGAATGTTG+CGG 0.678616 4_2:+65090103 None:intergenic
CCTGAGCTCAGCGTATGCTG+CGG 0.682238 4_2:+65086145 None:intergenic
ATCTCAACAAAGATTCTGGG+AGG 0.686344 4_2:-65084267 Msa0615630:intron
AGATGTTGACGATTAAGCGG+CGG 0.690438 4_2:+65089788 None:intergenic
AGAGGATGCTATCAATAGAG+GGG 0.695629 4_2:-65084703 Msa0615630:CDS
AAACTAAGAACTGTTGAGAG+GGG 0.707079 4_2:+65083925 None:intergenic
ACTTAATGCTCGTTGCAGTG+TGG 0.710896 4_2:-65086981 Msa0615630:CDS
AGGATCTGTTTATCCCACAA+GGG 0.714764 4_2:-65088164 Msa0615630:intron
TCAACCTGACCTGACCGACG+AGG 0.718365 4_2:-65086389 Msa0615630:intron
CATGGAAAGAAAACTGACAG+AGG 0.723703 4_2:-65086478 Msa0615630:CDS
ACTGCAACGAGCATTAAGTG+AGG 0.755012 4_2:+65086985 None:intergenic
CAGGCTTGCAAGAATCAACG+AGG 0.764400 4_2:+65087924 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAAAATCAATTATTATAA+CGG + chr4_2:65084360-65084379 None:intergenic 10.0%
!! ATAAATTGTAATATATAAGA+GGG + chr4_2:65087425-65087444 None:intergenic 10.0%
!! ATATTTATAACTGAATTATT+TGG - chr4_2:65089772-65089791 Msa0615630:CDS 10.0%
!! TATTTATAACTGAATTATTT+GGG - chr4_2:65089773-65089792 Msa0615630:CDS 10.0%
!!! CTATCTTTTTAATGTTTTTA+AGG + chr4_2:65086070-65086089 None:intergenic 15.0%
!!! ATTATATCACTCAATTTTTT+TGG - chr4_2:65086254-65086273 Msa0615630:intron 15.0%
!!! AATTATAATTTCTTTTTGTC+AGG - chr4_2:65086580-65086599 Msa0615630:intron 15.0%
!! GATAAATTGTAATATATAAG+AGG + chr4_2:65087426-65087445 None:intergenic 15.0%
!!! ACTGAAAAATTAATTTGAAA+TGG + chr4_2:65087920-65087939 None:intergenic 15.0%
!!! TATATCTTAATTTTTACCAT+AGG - chr4_2:65088603-65088622 Msa0615630:intron 15.0%
!!! ATTTTTTTGTTGAATCAGAT+CGG - chr4_2:65083881-65083900 Msa0615630:three_prime_UTR 20.0%
!!! ATAATTGATTTTTGATTCCT+AGG - chr4_2:65084365-65084384 Msa0615630:intron 20.0%
!!! TAATTGATTTTTGATTCCTA+GGG - chr4_2:65084366-65084385 Msa0615630:intron 20.0%
!! TATAACACAAGATAAGATAA+AGG - chr4_2:65084521-65084540 Msa0615630:intron 20.0%
!!! ATTTTTATTATAAGCTCTCT+AGG + chr4_2:65084589-65084608 None:intergenic 20.0%
!!! TTATACTTTACCTTTTGTTT+TGG - chr4_2:65084791-65084810 Msa0615630:intron 20.0%
!!! TAAATATTTTAATGTGTCCT+TGG - chr4_2:65085249-65085268 Msa0615630:CDS 20.0%
!!! AAATATTTTAATGTGTCCTT+GGG - chr4_2:65085250-65085269 Msa0615630:CDS 20.0%
!! AAAAATAATGCTAGAAATGA+AGG + chr4_2:65085614-65085633 None:intergenic 20.0%
!!! AGCATTATTTTTATTACGAA+AGG - chr4_2:65085622-65085641 Msa0615630:intron 20.0%
!! TTGAGTGATATAATGATATA+TGG + chr4_2:65086248-65086267 None:intergenic 20.0%
!! ATATTAATGTCACTAAAAGA+AGG + chr4_2:65086359-65086378 None:intergenic 20.0%
!! ATTACAATTTATCTGTTGTA+AGG - chr4_2:65087433-65087452 Msa0615630:intron 20.0%
!!! TATCAATTAAATTTTTCCAC+AGG - chr4_2:65087557-65087576 Msa0615630:CDS 20.0%
!!! AAATCAATAGTTCTACATAT+CGG - chr4_2:65087670-65087689 Msa0615630:CDS 20.0%
!!! TATTATAGTTTCTAAAGTTC+TGG + chr4_2:65087753-65087772 None:intergenic 20.0%
!!! AAATTAGTTTATGCTATCTT+TGG - chr4_2:65088549-65088568 Msa0615630:intron 20.0%
!!! AATTAGTTTATGCTATCTTT+GGG - chr4_2:65088550-65088569 Msa0615630:intron 20.0%
!!! TTAATTTAGTTTCTGAAAAC+GGG + chr4_2:65088640-65088659 None:intergenic 20.0%
!!! GTTAATTTAGTTTCTGAAAA+CGG + chr4_2:65088641-65088660 None:intergenic 20.0%
!! CTAAATAAGTTTAAGAAATC+AGG + chr4_2:65088731-65088750 None:intergenic 20.0%
!! TAAGAAAACAAAGTTATAAG+AGG + chr4_2:65088885-65088904 None:intergenic 20.0%
!!! TTCAACTTTTATTTTCTTTG+TGG - chr4_2:65089509-65089528 Msa0615630:CDS 20.0%
!! ATCATATATAGTTCATTTGT+TGG - chr4_2:65089538-65089557 Msa0615630:CDS 20.0%
!! TCATATATAGTTCATTTGTT+GGG - chr4_2:65089539-65089558 Msa0615630:CDS 20.0%
!!! TTTTCTTAGGCATATAAATT+TGG - chr4_2:65090050-65090069 Msa0615630:five_prime_UTR 20.0%
!! TTTCTTAGGCATATAAATTT+GGG - chr4_2:65090051-65090070 Msa0615630:five_prime_UTR 20.0%
! TTAAAGAGAAGTGAAGAATT+AGG + chr4_2:65083812-65083831 None:intergenic 25.0%
!! AACAGATTTTTACGTTTTTC+AGG - chr4_2:65084069-65084088 Msa0615630:three_prime_UTR 25.0%
! GATCTTCTTTCTGAATTTAT+AGG - chr4_2:65084242-65084261 Msa0615630:intron 25.0%
! TTCTGAATTTATAGGTTCTA+TGG - chr4_2:65084250-65084269 Msa0615630:intron 25.0%
! TAGTATGATTCATGAGAAAA+CGG - chr4_2:65084327-65084346 Msa0615630:CDS 25.0%
! ATTACTCCTTGATTATGATT+AGG - chr4_2:65084439-65084458 Msa0615630:intron 25.0%
! AATGTTCTGTAATTAGGATT+TGG + chr4_2:65084939-65084958 None:intergenic 25.0%
! GTGGAAATGATTAAGATTAT+AGG + chr4_2:65085121-65085140 None:intergenic 25.0%
! TTAATCATTTCCACCAAATT+TGG - chr4_2:65085127-65085146 Msa0615630:intron 25.0%
! ACCCAAAAGAATCAAATAAA+CGG + chr4_2:65085206-65085225 None:intergenic 25.0%
! TATCATTTCCTAAAACTCAA+TGG + chr4_2:65085231-65085250 None:intergenic 25.0%
! AAGATTAGATGCTTTATAAC+CGG + chr4_2:65085325-65085344 None:intergenic 25.0%
! TTTCTGTTTCATACAGATTA+TGG - chr4_2:65085402-65085421 Msa0615630:intron 25.0%
! TTCTGTTTCATACAGATTAT+GGG - chr4_2:65085403-65085422 Msa0615630:intron 25.0%
!!! AACTTGTTAATTTCACTCAT+AGG - chr4_2:65085445-65085464 Msa0615630:intron 25.0%
!!! TAATGTTTTTAAGGTCTTCA+GGG + chr4_2:65086061-65086080 None:intergenic 25.0%
!!! TTAATGTTTTTAAGGTCTTC+AGG + chr4_2:65086062-65086081 None:intergenic 25.0%
! ACATTAAAAAGATAGCTGAA+AGG - chr4_2:65086075-65086094 Msa0615630:intron 25.0%
! CATTAAAAAGATAGCTGAAA+GGG - chr4_2:65086076-65086095 Msa0615630:intron 25.0%
! TAGTGACATTAATATGATGA+TGG - chr4_2:65086364-65086383 Msa0615630:intron 25.0%
! AAACAGGTAAATATTCTTCA+AGG - chr4_2:65086516-65086535 Msa0615630:CDS 25.0%
! AACTAAAAATATTGGACTAC+CGG - chr4_2:65086947-65086966 Msa0615630:intron 25.0%
! ATTAACATACTTATCAATGC+AGG - chr4_2:65087148-65087167 Msa0615630:intron 25.0%
! AAATATAACAGAATGCTACA+TGG - chr4_2:65087244-65087263 Msa0615630:CDS 25.0%
!!! CATAATGGATATACTTTTTC+AGG + chr4_2:65087318-65087337 None:intergenic 25.0%
!! AACAAGAGCATAAAAATCAT+CGG + chr4_2:65087526-65087545 None:intergenic 25.0%
!!! TAGAACTATTGATTTGTTTC+GGG + chr4_2:65087665-65087684 None:intergenic 25.0%
!!! GTAGAACTATTGATTTGTTT+CGG + chr4_2:65087666-65087685 None:intergenic 25.0%
! TGTTACGAATATCTAAAAGT+TGG + chr4_2:65087834-65087853 None:intergenic 25.0%
!!! AAAGTGATAAAACCACTTTT+GGG + chr4_2:65088012-65088031 None:intergenic 25.0%
!! GGTAATACAACTATTCATTT+TGG + chr4_2:65088102-65088121 None:intergenic 25.0%
!!! AAAAGTAATTTTCTGGCATT+TGG + chr4_2:65088126-65088145 None:intergenic 25.0%
!!! AATGCCAGAAAATTACTTTT+AGG - chr4_2:65088126-65088145 Msa0615630:intron 25.0%
!! TTTGCCTAAAAGTAATTTTC+TGG + chr4_2:65088133-65088152 None:intergenic 25.0%
!!! TTCTTTTACTTTTAGAACCA+TGG + chr4_2:65088520-65088539 None:intergenic 25.0%
!! ATTAGTTTATGCTATCTTTG+GGG - chr4_2:65088551-65088570 Msa0615630:intron 25.0%
! ATACATTGATACCATGTTAA+TGG - chr4_2:65088690-65088709 Msa0615630:intron 25.0%
!! CACATTTAGAATTACAAAGA+CGG + chr4_2:65089315-65089334 None:intergenic 25.0%
! AAAAGACAAGACAATGTAAT+TGG + chr4_2:65089361-65089380 None:intergenic 25.0%
! AATAGATTAATGATAGCTGA+TGG - chr4_2:65089408-65089427 Msa0615630:intron 25.0%
! AATATCTCAACAAAGATTCT+GGG - chr4_2:65089470-65089489 Msa0615630:CDS 25.0%
! TTCTTAGGCATATAAATTTG+GGG - chr4_2:65090052-65090071 Msa0615630:five_prime_UTR 25.0%
!!! TGAAATAAGTGTTGATAATG+TGG - chr4_2:65090134-65090153 Msa0615630:five_prime_UTR 25.0%
!!! GAAATAAGTGTTGATAATGT+GGG - chr4_2:65090135-65090154 Msa0615630:five_prime_UTR 25.0%
!!! CGAGTGTTTTTTTAGAGATA+GGG + chr4_2:65083615-65083634 None:intergenic 30.0%
!!! TCGAGTGTTTTTTTAGAGAT+AGG + chr4_2:65083616-65083635 None:intergenic 30.0%
AACAAAATCGAATTCTACAG+TGG + chr4_2:65084041-65084060 None:intergenic 30.0%
AATGATTGCATATACTCACT+TGG + chr4_2:65084107-65084126 None:intergenic 30.0%
! TATGCAATCATTTTGTGATG+CGG - chr4_2:65084115-65084134 Msa0615630:intron 30.0%
! TAGTGATCCAAAGTATTTGA+AGG - chr4_2:65084157-65084176 Msa0615630:intron 30.0%
! ATCCAAAGTATTTGAAGGAA+GGG - chr4_2:65084162-65084181 Msa0615630:intron 30.0%
!!! TCTGTTTATTTTGAAGTTGC+TGG - chr4_2:65084741-65084760 Msa0615630:CDS 30.0%
!!! CTGTTTATTTTGAAGTTGCT+GGG - chr4_2:65084742-65084761 Msa0615630:CDS 30.0%
!!! TTACCTTTTGTTTTGGTCAA+TGG - chr4_2:65084798-65084817 Msa0615630:intron 30.0%
TAAAAATAGAGTTCCACTTC+CGG + chr4_2:65084832-65084851 None:intergenic 30.0%
GTCTGTAATGTTCTGTAATT+AGG + chr4_2:65084945-65084964 None:intergenic 30.0%
CAATAATTACCGACCAAATT+TGG + chr4_2:65085143-65085162 None:intergenic 30.0%
! ACCCGTTTATTTGATTCTTT+TGG - chr4_2:65085201-65085220 Msa0615630:intron 30.0%
CCCAAAAGAATCAAATAAAC+GGG + chr4_2:65085205-65085224 None:intergenic 30.0%
! CCCGTTTATTTGATTCTTTT+GGG - chr4_2:65085202-65085221 Msa0615630:intron 30.0%
!! TGGTAATAAGAGTCATTTTC+CGG - chr4_2:65085303-65085322 Msa0615630:CDS 30.0%
! TGAACACTTTTAACAACCTT+TGG + chr4_2:65085484-65085503 None:intergenic 30.0%
ACTGACTAAATGTTTATTGC+AGG - chr4_2:65085654-65085673 Msa0615630:intron 30.0%
AGCTATTGTTGGGATATATA+AGG - chr4_2:65085849-65085868 Msa0615630:intron 30.0%
GTTTCTGTTCAATAAAGCAA+GGG + chr4_2:65085952-65085971 None:intergenic 30.0%
AGTTTCTGTTCAATAAAGCA+AGG + chr4_2:65085953-65085972 None:intergenic 30.0%
TCAAATGAGTTCCATTCTTT+AGG + chr4_2:65086208-65086227 None:intergenic 30.0%
!!! CACTCAATTTTTTTGGAAGA+TGG - chr4_2:65086261-65086280 Msa0615630:intron 30.0%
GATATATGTCAAGAATGTGT+TGG + chr4_2:65086299-65086318 None:intergenic 30.0%
GTTTGCAAAAGTTGTAATAC+TGG - chr4_2:65086329-65086348 Msa0615630:intron 30.0%
!! GACATTAATATGATGATGGT+TGG - chr4_2:65086368-65086387 Msa0615630:intron 30.0%
CTGACTCCAACTAAAAATAT+TGG - chr4_2:65086939-65086958 Msa0615630:intron 30.0%
!!! GGTAGTCCAATATTTTTAGT+TGG + chr4_2:65086948-65086967 None:intergenic 30.0%
! TGATCTGTTGTTTATTGTGT+TGG - chr4_2:65086989-65087008 Msa0615630:CDS 30.0%
ATATCCATTATGCTAAGCAT+AGG - chr4_2:65087326-65087345 Msa0615630:CDS 30.0%
TATTAGTAATATCACCTCGT+CGG + chr4_2:65087368-65087387 None:intergenic 30.0%
! TATCTGTTGTAAGGAACTTT+TGG - chr4_2:65087442-65087461 Msa0615630:intron 30.0%
! ATCTGTTGTAAGGAACTTTT+GGG - chr4_2:65087443-65087462 Msa0615630:intron 30.0%
! AATTAATTTGAAATGGCCTC+TGG + chr4_2:65087913-65087932 None:intergenic 30.0%
AGTCTTTCTTTAGTTACACT+TGG - chr4_2:65087937-65087956 Msa0615630:CDS 30.0%
TTTAGTTACACTTGGACATT+TGG - chr4_2:65087945-65087964 Msa0615630:CDS 30.0%
! GAAAGTGATAAAACCACTTT+TGG + chr4_2:65088013-65088032 None:intergenic 30.0%
CAATTGCTCAAATATGCATT+TGG - chr4_2:65088218-65088237 Msa0615630:CDS 30.0%
AGAAAAATTGTAGCCAATGA+GGG + chr4_2:65088246-65088265 None:intergenic 30.0%
AAGAAAAATTGTAGCCAATG+AGG + chr4_2:65088247-65088266 None:intergenic 30.0%
! CAAGTTGTAAAAGTACAACA+AGG + chr4_2:65088299-65088318 None:intergenic 30.0%
TCATAAAGAACTGACAGAAA+TGG - chr4_2:65088421-65088440 Msa0615630:intron 30.0%
CAAAAATGTCACCATTAACA+TGG + chr4_2:65088704-65088723 None:intergenic 30.0%
GAGCTAGTAAAAAGAAAAAC+AGG + chr4_2:65088770-65088789 None:intergenic 30.0%
AGTTATAAGAGGCTAAAGAT+TGG + chr4_2:65088874-65088893 None:intergenic 30.0%
CAATAGGTATTTGATCCAAA+CGG + chr4_2:65089010-65089029 None:intergenic 30.0%
CATTGAGTTATCATAATGTC+TGG - chr4_2:65089249-65089268 Msa0615630:intron 30.0%
AAGAGAGAAACTGAAAGAAA+GGG + chr4_2:65089287-65089306 None:intergenic 30.0%
AAAGAGAGAAACTGAAAGAA+AGG + chr4_2:65089288-65089307 None:intergenic 30.0%
CAATATCTCAACAAAGATTC+TGG - chr4_2:65089469-65089488 Msa0615630:CDS 30.0%
ATCTCTATGAGAAATGATGA+AGG - chr4_2:65089574-65089593 Msa0615630:CDS 30.0%
TCTCTATGAGAAATGATGAA+GGG - chr4_2:65089575-65089594 Msa0615630:CDS 30.0%
!!! AAGGGATGAGTTGTTTTTTA+TGG - chr4_2:65089593-65089612 Msa0615630:CDS 30.0%
!!! AGGGATGAGTTGTTTTTTAT+GGG - chr4_2:65089594-65089613 Msa0615630:CDS 30.0%
ACAAACTAAACGTTCATTTC+AGG - chr4_2:65089624-65089643 Msa0615630:CDS 30.0%
CAAACTAAACGTTCATTTCA+GGG - chr4_2:65089625-65089644 Msa0615630:CDS 30.0%
ACTGAATTATTTGGGTCATA+AGG - chr4_2:65089781-65089800 Msa0615630:CDS 30.0%
! TAGGATTGAACCTTTTCTTT+GGG - chr4_2:65089918-65089937 Msa0615630:intron 30.0%
ATAAAACATGCCCAAAGAAA+AGG + chr4_2:65089931-65089950 None:intergenic 30.0%
!!! AGGTTGTAGTCTTTTTTCTT+AGG - chr4_2:65090037-65090056 Msa0615630:five_prime_UTR 30.0%
! AAATAAGCATCGTTCATTGT+TGG + chr4_2:65090106-65090125 None:intergenic 30.0%
!!! TTAGAGATAGGGCATTGTTT+TGG + chr4_2:65083604-65083623 None:intergenic 35.0%
!! GATCGGAAAAAGCATTTACA+TGG - chr4_2:65083898-65083917 Msa0615630:three_prime_UTR 35.0%
GGAAAGAGTAAAGGTAAAAG+CGG + chr4_2:65084020-65084039 None:intergenic 35.0%
TTCTACAGTGGAAAGAGTAA+AGG + chr4_2:65084029-65084048 None:intergenic 35.0%
! GATCCAAAGTATTTGAAGGA+AGG - chr4_2:65084161-65084180 Msa0615630:intron 35.0%
! TCCAAAGTATTTGAAGGAAG+GGG - chr4_2:65084163-65084182 Msa0615630:intron 35.0%
AATTCAGAAAGAAGATCCCT+CGG + chr4_2:65084239-65084258 None:intergenic 35.0%
ACAGTGCCTAATCATAATCA+AGG + chr4_2:65084448-65084467 None:intergenic 35.0%
! GATTATGATTAGGCACTGTT+TGG - chr4_2:65084449-65084468 Msa0615630:intron 35.0%
TGACCATTGACCAAAACAAA+AGG + chr4_2:65084804-65084823 None:intergenic 35.0%
ACGTAATAGACATGTTATGC+AGG - chr4_2:65085069-65085088 Msa0615630:intron 35.0%
TCATTTCCACCAAATTTGGT+CGG - chr4_2:65085131-65085150 Msa0615630:intron 35.0%
TAATTACCGACCAAATTTGG+TGG + chr4_2:65085140-65085159 None:intergenic 35.0%
! TTGGGTATCCATTGAGTTTT+AGG - chr4_2:65085220-65085239 Msa0615630:intron 35.0%
!!! TATTTTAATGTGTCCTTGGG+TGG - chr4_2:65085253-65085272 Msa0615630:CDS 35.0%
CATGTTATGCATTATGCTAG+AGG - chr4_2:65085276-65085295 Msa0615630:CDS 35.0%
!!! TCTTTTTTACAAGCCGCAAT+TGG - chr4_2:65085341-65085360 Msa0615630:CDS 35.0%
CCAAAAGATAACACCAATTG+CGG + chr4_2:65085357-65085376 None:intergenic 35.0%
GATTATGGGTTCATAAATGC+TGG - chr4_2:65085417-65085436 Msa0615630:intron 35.0%
TCGCGACATTACATCTAATT+TGG - chr4_2:65085543-65085562 Msa0615630:intron 35.0%
CGCGACATTACATCTAATTT+GGG - chr4_2:65085544-65085563 Msa0615630:intron 35.0%
TGTTTATTGCAGGATGAAAG+TGG - chr4_2:65085664-65085683 Msa0615630:intron 35.0%
GTATTTGCACATTCCATACT+CGG + chr4_2:65085704-65085723 None:intergenic 35.0%
GTATGGAATGTGCAAATACA+AGG - chr4_2:65085705-65085724 Msa0615630:intron 35.0%
CTATGATATCCACTGTTCTT+GGG + chr4_2:65085786-65085805 None:intergenic 35.0%
AGAAACTTGATTGATTGCTG+TGG - chr4_2:65085966-65085985 Msa0615630:CDS 35.0%
GTTGAGAAGAGATACATTGT+TGG + chr4_2:65086012-65086031 None:intergenic 35.0%
TGTATCTCTTCTCAACAAAG+AGG - chr4_2:65086016-65086035 Msa0615630:CDS 35.0%
GATGATACATTTGATCTGCT+CGG - chr4_2:65086098-65086117 Msa0615630:intron 35.0%
CTGCTTTCTTTATCCAAGAA+TGG + chr4_2:65086151-65086170 None:intergenic 35.0%
! GCAGTGATTTTATTGATGCT+TGG - chr4_2:65086167-65086186 Msa0615630:intron 35.0%
! GTGATTTTATTGATGCTTGG+TGG - chr4_2:65086170-65086189 Msa0615630:intron 35.0%
AAGAATGGAACTCATTTGAG+AGG - chr4_2:65086209-65086228 Msa0615630:intron 35.0%
AGAATGGAACTCATTTGAGA+GGG - chr4_2:65086210-65086229 Msa0615630:intron 35.0%
GTTACTTCAGATCAAGAAAC+AGG - chr4_2:65086500-65086519 Msa0615630:CDS 35.0%
! TCTTTTTGTCAGGAGAAAGA+AGG - chr4_2:65086590-65086609 Msa0615630:intron 35.0%
TGTAGCTATACACGAAGTTA+TGG - chr4_2:65086693-65086712 Msa0615630:CDS 35.0%
CCACTTACAGTTCCATATAT+GGG + chr4_2:65086799-65086818 None:intergenic 35.0%
GTCAAGTTTGGAAGAGTTAA+AGG + chr4_2:65086878-65086897 None:intergenic 35.0%
AAAAGCCACAAAGTCAAGTT+TGG + chr4_2:65086890-65086909 None:intergenic 35.0%
GTTTATTGTGTTGGACCAAA+TGG - chr4_2:65086998-65087017 Msa0615630:CDS 35.0%
GATCAATATCAGGATCCATT+TGG + chr4_2:65087016-65087035 None:intergenic 35.0%
GATATTTGGCGATCAATATC+AGG + chr4_2:65087026-65087045 None:intergenic 35.0%
TTGAATTCTCTAGTGTATGC+AGG + chr4_2:65087128-65087147 None:intergenic 35.0%
GAATCCTATGCTTAGCATAA+TGG + chr4_2:65087333-65087352 None:intergenic 35.0%
!! GTTTTGTATTGATATCCTGC+TGG - chr4_2:65087692-65087711 Msa0615630:CDS 35.0%
! TCTAAAGTTCTGGCAGTTAT+TGG + chr4_2:65087743-65087762 None:intergenic 35.0%
CTTTCTGCTCAACTTCAATT+TGG + chr4_2:65087795-65087814 None:intergenic 35.0%
CAAATTGAAGTTGAGCAGAA+AGG - chr4_2:65087793-65087812 Msa0615630:intron 35.0%
! TACCCTTCCAACTTTTCTTA+TGG - chr4_2:65087969-65087988 Msa0615630:CDS 35.0%
! ACCCTTCCAACTTTTCTTAT+GGG - chr4_2:65087970-65087989 Msa0615630:CDS 35.0%
TATCACTTTCGTTGTTTAGC+TGG - chr4_2:65088023-65088042 Msa0615630:CDS 35.0%
!!! TTGTTTAGCTGGTGGATTTT+TGG - chr4_2:65088034-65088053 Msa0615630:CDS 35.0%
!! AGTAATTTTCTGGCATTTGG+CGG + chr4_2:65088123-65088142 None:intergenic 35.0%
!!! TTACTTTTAGAACCATGGTC+AGG + chr4_2:65088515-65088534 None:intergenic 35.0%
ACGGGAAATAAATGAACCTA+TGG + chr4_2:65088622-65088641 None:intergenic 35.0%
AAACAGGCAGAGTTCAATAA+TGG + chr4_2:65088754-65088773 None:intergenic 35.0%
AATCTCAACTCTACCTGTTT+CGG - chr4_2:65088911-65088930 Msa0615630:intron 35.0%
AAACAGTTTACATCCGAAAC+AGG + chr4_2:65088927-65088946 None:intergenic 35.0%
! GAAGCATTCAATTCCCTATT+TGG - chr4_2:65088966-65088985 Msa0615630:intron 35.0%
AATACCTATTGCAGACATAG+AGG - chr4_2:65089019-65089038 Msa0615630:intron 35.0%
ATAGAGGATGCTATCAATAG+AGG - chr4_2:65089035-65089054 Msa0615630:intron 35.0%
TAGAGGATGCTATCAATAGA+GGG - chr4_2:65089036-65089055 Msa0615630:intron 35.0%
TCAAAAGATGTACCTCTAAC+AGG + chr4_2:65089097-65089116 None:intergenic 35.0%
!! TGTTAGAGGTACATCTTTTG+AGG - chr4_2:65089096-65089115 Msa0615630:intron 35.0%
AGAGAATGTGATACTATTCC+TGG + chr4_2:65089163-65089182 None:intergenic 35.0%
AGAGAGAAACTGAAAGAAAG+GGG + chr4_2:65089286-65089305 None:intergenic 35.0%
GACAATGTAATTGGAGTTTG+TGG + chr4_2:65089352-65089371 None:intergenic 35.0%
TATCTGCTAATACCTCATCA+AGG - chr4_2:65089726-65089745 Msa0615630:intron 35.0%
!! CATTTGTTATGTCCTTGATG+AGG + chr4_2:65089741-65089760 None:intergenic 35.0%
GACATAACAAATGCAATGCT+TGG - chr4_2:65089748-65089767 Msa0615630:intron 35.0%
AAACTAAGAACTGTTGAGAG+GGG + chr4_2:65089818-65089837 None:intergenic 35.0%
GAAACTAAGAACTGTTGAGA+GGG + chr4_2:65089819-65089838 None:intergenic 35.0%
CAGTACACATGAAAACAAGA+CGG + chr4_2:65089885-65089904 None:intergenic 35.0%
! GTAGGATTGAACCTTTTCTT+TGG - chr4_2:65089917-65089936 Msa0615630:intron 35.0%
!! ATTTTGGTCTAGTAAGAGAC+CGG + chr4_2:65090175-65090194 None:intergenic 35.0%
GTCTCTTACTAGACCAAAAT+AGG - chr4_2:65090175-65090194 Msa0615630:five_prime_UTR 35.0%
AGGAAGAAAGAGGAATGTTG+CGG + chr4_2:65083640-65083659 None:intergenic 40.0%
ATCACTACCACGAACAACTT+CGG + chr4_2:65084144-65084163 None:intergenic 40.0%
TCCCCTTCCTTCAAATACTT+TGG + chr4_2:65084167-65084186 None:intergenic 40.0%
CAAGTTCTCGTTGGATTTGA+AGG - chr4_2:65084188-65084207 Msa0615630:intron 40.0%
ACAAGTTCAAGAGAAACCCT+AGG + chr4_2:65084385-65084404 None:intergenic 40.0%
TCGAATAAGCCAATCCAAAC+AGG - chr4_2:65084678-65084697 Msa0615630:CDS 40.0%
TACTGATAGCCTGTTTGGAT+TGG + chr4_2:65084690-65084709 None:intergenic 40.0%
AAAGCTACTGATAGCCTGTT+TGG + chr4_2:65084695-65084714 None:intergenic 40.0%
AAACAGGCTATCAGTAGCTT+TGG - chr4_2:65084694-65084713 Msa0615630:CDS 40.0%
AACAGGCTATCAGTAGCTTT+GGG - chr4_2:65084695-65084714 Msa0615630:CDS 40.0%
TGTGCGGGTTCTTATGTTTA+AGG - chr4_2:65084766-65084785 Msa0615630:CDS 40.0%
GTGCGGGTTCTTATGTTTAA+GGG - chr4_2:65084767-65084786 Msa0615630:CDS 40.0%
TTGGTCAATGGTCAATGATC+CGG - chr4_2:65084810-65084829 Msa0615630:intron 40.0%
TGTTTGTATCCAGACTCACT+TGG - chr4_2:65085167-65085186 Msa0615630:intron 40.0%
ATTTACCAACCAAGTGAGTC+TGG + chr4_2:65085179-65085198 None:intergenic 40.0%
TGCATTATGCTAGAGGATAG+TGG - chr4_2:65085283-65085302 Msa0615630:CDS 40.0%
!!! CCGCAATTGGTGTTATCTTT+TGG - chr4_2:65085354-65085373 Msa0615630:CDS 40.0%
ATGTAATGTCGCGATAATCG+CGG + chr4_2:65085537-65085556 None:intergenic 40.0%
AGGATCTGTTTATCCCACAA+GGG - chr4_2:65085576-65085595 Msa0615630:intron 40.0%
GATCTTGTGATTACCCTTGT+GGG + chr4_2:65085592-65085611 None:intergenic 40.0%
!! ATTTTCAGGAACTTCCTGCA+TGG + chr4_2:65085746-65085765 None:intergenic 40.0%
GCTATGATATCCACTGTTCT+TGG + chr4_2:65085787-65085806 None:intergenic 40.0%
AACAGTGGATATCATAGCAG+AGG - chr4_2:65085789-65085808 Msa0615630:intron 40.0%
AAAAGCAAAGGCAGTGTGAA+TGG - chr4_2:65085883-65085902 Msa0615630:intron 40.0%
TCACTTGCACCTTCTATACA+TGG - chr4_2:65086125-65086144 Msa0615630:CDS 40.0%
CAAGAATGGCCATGTATAGA+AGG + chr4_2:65086137-65086156 None:intergenic 40.0%
CTTCTATACATGGCCATTCT+TGG - chr4_2:65086135-65086154 Msa0615630:CDS 40.0%
! TTTATTGATGCTTGGTGGAG+TGG - chr4_2:65086175-65086194 Msa0615630:intron 40.0%
GTGGAGAAGAACCTAAAGAA+TGG - chr4_2:65086194-65086213 Msa0615630:intron 40.0%
! CCAGTAGTTGATATGGCTAA+GGG + chr4_2:65086446-65086465 None:intergenic 40.0%
! ACCAGTAGTTGATATGGCTA+AGG + chr4_2:65086447-65086466 None:intergenic 40.0%
TAGCCATATCAACTACTGGT+CGG - chr4_2:65086447-65086466 Msa0615630:CDS 40.0%
GAGAAAGAAGGTTAGAAGCT+GGG - chr4_2:65086602-65086621 Msa0615630:intron 40.0%
AGAAAGAAGGTTAGAAGCTG+GGG - chr4_2:65086603-65086622 Msa0615630:intron 40.0%
ACCGTAACTATTGCTAAAGC+TGG - chr4_2:65086724-65086743 Msa0615630:CDS 40.0%
! CCCAGCTTTAGCAATAGTTA+CGG + chr4_2:65086728-65086747 None:intergenic 40.0%
CCGTAACTATTGCTAAAGCT+GGG - chr4_2:65086725-65086744 Msa0615630:CDS 40.0%
CCCATATATGGAACTGTAAG+TGG - chr4_2:65086796-65086815 Msa0615630:CDS 40.0%
GCCACTTACAGTTCCATATA+TGG + chr4_2:65086800-65086819 None:intergenic 40.0%
CTCTTCCAAACTTGACTTTG+TGG - chr4_2:65086882-65086901 Msa0615630:intron 40.0%
AATCGAGAAAGCAAAGAGTC+CGG + chr4_2:65086969-65086988 None:intergenic 40.0%
TGCTTATCTACCTCCATCAA+TGG + chr4_2:65087084-65087103 None:intergenic 40.0%
CATACTTATCAATGCAGGTG+AGG - chr4_2:65087153-65087172 Msa0615630:intron 40.0%
TGCTAGATATGGAAGAGAAG+AGG - chr4_2:65087192-65087211 Msa0615630:intron 40.0%
CATGGAAAGAAAACTGACAG+AGG - chr4_2:65087262-65087281 Msa0615630:CDS 40.0%
AGACTTCACAATAGCCATTC+AGG + chr4_2:65087495-65087514 None:intergenic 40.0%
GAATGCAAAGTCAAATGCGA+AGG - chr4_2:65087617-65087636 Msa0615630:CDS 40.0%
AACAAACGTAGTATGTCCAG+AGG - chr4_2:65087894-65087913 Msa0615630:CDS 40.0%
CCCCATAAGAAAAGTTGGAA+GGG + chr4_2:65087974-65087993 None:intergenic 40.0%
! CCCTTCCAACTTTTCTTATG+GGG - chr4_2:65087971-65087990 Msa0615630:CDS 40.0%
TTGAGCCCCATAAGAAAAGT+TGG + chr4_2:65087979-65087998 None:intergenic 40.0%
TTGAAACCTGGAAGGACAAA+TGG + chr4_2:65088355-65088374 None:intergenic 40.0%
!! ATCAGACTTTGAAACCTGGA+AGG + chr4_2:65088363-65088382 None:intergenic 40.0%
!! CAACATCAGACTTTGAAACC+TGG + chr4_2:65088367-65088386 None:intergenic 40.0%
GCTTCAATTCTGCATGTCAA+TGG + chr4_2:65088951-65088970 None:intergenic 40.0%
AGGTATTTGATCCAAACGGT+TGG + chr4_2:65089006-65089025 None:intergenic 40.0%
AGAGGATGCTATCAATAGAG+GGG - chr4_2:65089037-65089056 Msa0615630:intron 40.0%
AGATGTATTGCTCCTGTTAG+AGG - chr4_2:65089082-65089101 Msa0615630:intron 40.0%
GGATACTAGTGTAGCGAATA+CGG + chr4_2:65089142-65089161 None:intergenic 40.0%
TATTCGCTACACTAGTATCC+AGG - chr4_2:65089142-65089161 Msa0615630:intron 40.0%
ATGTAATTGGAGTTTGTGGC+TGG + chr4_2:65089348-65089367 None:intergenic 40.0%
AGCTGATGGAATAGTGCATA+TGG - chr4_2:65089422-65089441 Msa0615630:intron 40.0%
ATCTCAACAAAGATTCTGGG+AGG - chr4_2:65089473-65089492 Msa0615630:CDS 40.0%
CGAAACTAAGAACTGTTGAG+AGG + chr4_2:65089820-65089839 None:intergenic 40.0%
AATGACACTCCCTGTCTTTA+TGG - chr4_2:65089846-65089865 Msa0615630:intron 40.0%
CAGCGAAATCCATAAAGACA+GGG + chr4_2:65089858-65089877 None:intergenic 40.0%
GTACTGTAAACAACGCTTGT+AGG - chr4_2:65089899-65089918 Msa0615630:intron 40.0%
CACAGATGAGGGAAACATAT+AGG + chr4_2:65089962-65089981 None:intergenic 40.0%
ATATGTTTCCCTCATCTGTG+CGG - chr4_2:65089962-65089981 Msa0615630:CDS 40.0%
TTTCTTGCCATACCTTCAGT+TGG - chr4_2:65089994-65090013 Msa0615630:CDS 40.0%
ACAACCTTCAACACATAGCA+CGG + chr4_2:65090024-65090043 None:intergenic 40.0%
! TTTTGGTCTAGTAAGAGACC+GGG + chr4_2:65090174-65090193 None:intergenic 40.0%
GCGGGAAATGGAGTATGATT+TGG + chr4_2:65083559-65083578 None:intergenic 45.0%
!!! AGATAGGGCATTGTTTTGGC+GGG + chr4_2:65083600-65083619 None:intergenic 45.0%
!!! GAGATAGGGCATTGTTTTGG+CGG + chr4_2:65083601-65083620 None:intergenic 45.0%
! TCGCTCAAATCCATTTTCCG+AGG + chr4_2:65083733-65083752 None:intergenic 45.0%
AGATGTTGACGATTAAGCGG+CGG + chr4_2:65083955-65083974 None:intergenic 45.0%
CGGAGATGTTGACGATTAAG+CGG + chr4_2:65083958-65083977 None:intergenic 45.0%
GTAACTCGGCGAGAAACAAA+AGG + chr4_2:65084215-65084234 None:intergenic 45.0%
! AGGTTCTATGGTTTGTGTCG+AGG - chr4_2:65084262-65084281 Msa0615630:intron 45.0%
! GGTTCTATGGTTTGTGTCGA+GGG - chr4_2:65084263-65084282 Msa0615630:intron 45.0%
CACTAGCTAGCAACACTGTT+TGG + chr4_2:65084639-65084658 None:intergenic 45.0%
! TTTGAAGTTGCTGGGATGTG+CGG - chr4_2:65084750-65084769 Msa0615630:CDS 45.0%
AATGGTCAATGATCCGGAAG+TGG - chr4_2:65084816-65084835 Msa0615630:intron 45.0%
TAGACATGTTATGCAGGCAG+AGG - chr4_2:65085075-65085094 Msa0615630:intron 45.0%
ATGTTATGCAGGCAGAGGTA+AGG - chr4_2:65085080-65085099 Msa0615630:intron 45.0%
TGTATCCAGACTCACTTGGT+TGG - chr4_2:65085171-65085190 Msa0615630:intron 45.0%
AATGCATAACATGCCACCCA+AGG + chr4_2:65085269-65085288 None:intergenic 45.0%
CACTCATAGGTTCTCTCGTA+AGG - chr4_2:65085458-65085477 Msa0615630:intron 45.0%
! TCTAATTTGGGTTTGCCCAC+AGG - chr4_2:65085556-65085575 Msa0615630:intron 45.0%
GTGGGATAAACAGATCCTGT+GGG + chr4_2:65085574-65085593 None:intergenic 45.0%
TGTGGGATAAACAGATCCTG+TGG + chr4_2:65085575-65085594 None:intergenic 45.0%
CAGGATCTGTTTATCCCACA+AGG - chr4_2:65085575-65085594 Msa0615630:intron 45.0%
GGATCTTGTGATTACCCTTG+TGG + chr4_2:65085593-65085612 None:intergenic 45.0%
! AACTTGCTTGTGACCGAGTA+TGG - chr4_2:65085688-65085707 Msa0615630:intron 45.0%
TCATCAAACCTTGTCCATGC+AGG - chr4_2:65085729-65085748 Msa0615630:intron 45.0%
GTTCCTGAAAATTCTGCACC+TGG - chr4_2:65085754-65085773 Msa0615630:intron 45.0%
! TGACCAGGTGCAGAATTTTC+AGG + chr4_2:65085760-65085779 None:intergenic 45.0%
GCGATCGTGTAGCTATTGTT+GGG - chr4_2:65085839-65085858 Msa0615630:intron 45.0%
GGGATATATAAGGCTCTTCC+AGG - chr4_2:65085859-65085878 Msa0615630:intron 45.0%
GCTCTTCCAGGAAAAAGCAA+AGG - chr4_2:65085871-65085890 Msa0615630:intron 45.0%
!!! ACACTGCCTTTGCTTTTTCC+TGG + chr4_2:65085880-65085899 None:intergenic 45.0%
GCAGTGTGAATGGTGTATTC+AGG - chr4_2:65085893-65085912 Msa0615630:intron 45.0%
GTTCAATAAAGCAAGGGCAG+AGG + chr4_2:65085946-65085965 None:intergenic 45.0%
TGATTGATTGCTGTGGATGC+AGG - chr4_2:65085973-65085992 Msa0615630:CDS 45.0%
AGTTGAGACTTGGCAACAGA+TGG + chr4_2:65086398-65086417 None:intergenic 45.0%
TGCTCTCAAGAGTTGAGACT+TGG + chr4_2:65086408-65086427 None:intergenic 45.0%
CCCTTAGCCATATCAACTAC+TGG - chr4_2:65086443-65086462 Msa0615630:CDS 45.0%
AGCCATATCAACTACTGGTC+GGG - chr4_2:65086448-65086467 Msa0615630:CDS 45.0%
GGAGAAAGAAGGTTAGAAGC+TGG - chr4_2:65086601-65086620 Msa0615630:intron 45.0%
AACGAGCATTAAGTGAGGCA+TGG + chr4_2:65086753-65086772 None:intergenic 45.0%
ACTGCAACGAGCATTAAGTG+AGG + chr4_2:65086758-65086777 None:intergenic 45.0%
ACTTAATGCTCGTTGCAGTG+TGG - chr4_2:65086759-65086778 Msa0615630:CDS 45.0%
GCAGCTGCAAATCCCATATA+TGG - chr4_2:65086784-65086803 Msa0615630:CDS 45.0%
AACGAAATCGATGCATACGC+AGG + chr4_2:65087058-65087077 None:intergenic 45.0%
CGATTTCGTTCTGCCATTGA+TGG - chr4_2:65087068-65087087 Msa0615630:CDS 45.0%
TTTCGTTCTGCCATTGATGG+AGG - chr4_2:65087071-65087090 Msa0615630:CDS 45.0%
ACTTATCAATGCAGGTGAGG+CGG - chr4_2:65087156-65087175 Msa0615630:intron 45.0%
!! CATGATGGGAGTGCTAGATA+TGG - chr4_2:65087181-65087200 Msa0615630:intron 45.0%
TCAGGTGTGGCAATAGCAAA+AGG + chr4_2:65087477-65087496 None:intergenic 45.0%
! TTGCTATTGCCACACCTGAA+TGG - chr4_2:65087478-65087497 Msa0615630:intron 45.0%
TCACAATAGCCATTCAGGTG+TGG + chr4_2:65087490-65087509 None:intergenic 45.0%
!! GAGCAGAAAGGTACTGTACT+TGG - chr4_2:65087805-65087824 Msa0615630:intron 45.0%
GCCCCATAAGAAAAGTTGGA+AGG + chr4_2:65087975-65087994 None:intergenic 45.0%
! AACGTTTTGCAGCCCAAAAG+TGG - chr4_2:65087997-65088016 Msa0615630:CDS 45.0%
CACTTTCGTTGTTTAGCTGG+TGG - chr4_2:65088026-65088045 Msa0615630:CDS 45.0%
TATGCATTTGGCACCCTCAT+TGG - chr4_2:65088230-65088249 Msa0615630:CDS 45.0%
GAATCTCCATTTGTCCTTCC+AGG - chr4_2:65088346-65088365 Msa0615630:intron 45.0%
GAAAATGATGGTCCTGACCA+TGG - chr4_2:65088500-65088519 Msa0615630:intron 45.0%
TAGCTCAACATCAGATGCCA+TGG - chr4_2:65088784-65088803 Msa0615630:intron 45.0%
!! TGAGGTATCGTCTACTTCCA+TGG + chr4_2:65088804-65088823 None:intergenic 45.0%
TGGCAGTTGAAAGACCTTTC+AGG + chr4_2:65088854-65088873 None:intergenic 45.0%
GCGCATATGCTGACCAAATA+GGG + chr4_2:65088982-65089001 None:intergenic 45.0%
AGCGCATATGCTGACCAAAT+AGG + chr4_2:65088983-65089002 None:intergenic 45.0%
GCATCCTCTATGTCTGCAAT+AGG + chr4_2:65089026-65089045 None:intergenic 45.0%
TACATCTGCAGAGCTGTAAG+TGG + chr4_2:65089069-65089088 None:intergenic 45.0%
ACTAGTGTAGCGAATACGGA+TGG + chr4_2:65089138-65089157 None:intergenic 45.0%
AAACGTTCATTTCAGGGAGC+AGG - chr4_2:65089631-65089650 Msa0615630:CDS 45.0%
GGTATTAGCAGATAGCTCTC+TGG + chr4_2:65089720-65089739 None:intergenic 45.0%
GCAGCGAAATCCATAAAGAC+AGG + chr4_2:65089859-65089878 None:intergenic 45.0%
!!! ATATTTGATAATTTAAATTT+GGG + chr4_2:65085045-65085064 None:intergenic 5.0%
!!! TATATTTGATAATTTAAATT+TGG + chr4_2:65085046-65085065 None:intergenic 5.0%
AGAGAGAGAGAGAGAGAGAG+TGG + chr4_2:65083669-65083688 None:intergenic 50.0%
GAGGATTCTGCGAGAACGAT+GGG + chr4_2:65083714-65083733 None:intergenic 50.0%
CATCGTTCTCGCAGAATCCT+CGG - chr4_2:65083713-65083732 Msa0615630:three_prime_UTR 50.0%
CTCGCAGAATCCTCGGAAAA+TGG - chr4_2:65083720-65083739 Msa0615630:three_prime_UTR 50.0%
TTCCTAAGTCGCGGAAGTTG+TGG + chr4_2:65083985-65084004 None:intergenic 50.0%
ACTTCCGCGACTTAGGAAAC+AGG - chr4_2:65083987-65084006 Msa0615630:three_prime_UTR 50.0%
CGAACCTGTTTCCTAAGTCG+CGG + chr4_2:65083994-65084013 None:intergenic 50.0%
GAAGGGGAACAAGTTCTCGT+TGG - chr4_2:65084179-65084198 Msa0615630:intron 50.0%
TTGAAGTTGCTGGGATGTGC+GGG - chr4_2:65084751-65084770 Msa0615630:CDS 50.0%
AGGTTCTCTCGTAAGGCCAA+AGG - chr4_2:65085465-65085484 Msa0615630:intron 50.0%
AGGAACTTCCTGCATGGACA+AGG + chr4_2:65085740-65085759 None:intergenic 50.0%
CAGGCTTGCAAGAATCAACG+AGG + chr4_2:65085819-65085838 None:intergenic 50.0%
!! CTCGTTGATTCTTGCAAGCC+TGG - chr4_2:65085817-65085836 Msa0615630:intron 50.0%
ACAATAGCTACACGATCGCC+AGG + chr4_2:65085838-65085857 None:intergenic 50.0%
GGCGATCGTGTAGCTATTGT+TGG - chr4_2:65085838-65085857 Msa0615630:intron 50.0%
AGGTCTTCAGGGCTGTAGAT+TGG + chr4_2:65086050-65086069 None:intergenic 50.0%
GCCATATCAACTACTGGTCG+GGG - chr4_2:65086449-65086468 Msa0615630:CDS 50.0%
! ACCCCGACCAGTAGTTGATA+TGG + chr4_2:65086453-65086472 None:intergenic 50.0%
AAGGTTAGAAGCTGGGGCAA+TGG - chr4_2:65086609-65086628 Msa0615630:intron 50.0%
GCAATGGTTCTTGCTGACAG+AGG - chr4_2:65086625-65086644 Msa0615630:intron 50.0%
TAATGCTCGTTGCAGTGTGG+TGG - chr4_2:65086762-65086781 Msa0615630:CDS 50.0%
GCAGGACGTGCTCTGATATT+TGG + chr4_2:65087040-65087059 None:intergenic 50.0%
GTAATATCACCTCGTCGGTC+AGG + chr4_2:65087363-65087382 None:intergenic 50.0%
GTGATTGTGTTCAGCACTCG+TGG - chr4_2:65088318-65088337 Msa0615630:intron 50.0%
TGGATGAGCGTGAAGAAGAG+AGG - chr4_2:65088441-65088460 Msa0615630:intron 50.0%
GGATGAGCGTGAAGAAGAGA+GGG - chr4_2:65088442-65088461 Msa0615630:intron 50.0%
AGCGTGAAGAAGAGAGGGAA+AGG - chr4_2:65088447-65088466 Msa0615630:intron 50.0%
GCGTGAAGAAGAGAGGGAAA+GGG - chr4_2:65088448-65088467 Msa0615630:intron 50.0%
AGAAGAGAGGGAAAGGGAAC+TGG - chr4_2:65088454-65088473 Msa0615630:intron 50.0%
AGGGCTGACGGTGAAAATGA+TGG - chr4_2:65088488-65088507 Msa0615630:intron 50.0%
AGTGAGACCAACAGCAGGTT+GGG + chr4_2:65088831-65088850 None:intergenic 50.0%
! CTGTTGGTCTCACTCCTGAA+AGG - chr4_2:65088837-65088856 Msa0615630:intron 50.0%
CTCTCTCTCTCTCTCTCTCA+AGG - chr4_2:65089199-65089218 Msa0615630:intron 50.0%
TTGTGCAACCGCACAGATGA+GGG + chr4_2:65089973-65089992 None:intergenic 50.0%
ATTGTGCAACCGCACAGATG+AGG + chr4_2:65089974-65089993 None:intergenic 50.0%
AGAGCCGTGCTATGTGTTGA+AGG - chr4_2:65090017-65090036 Msa0615630:exon 50.0%
TAGTAAGAGACCGGGTAAGG+TGG + chr4_2:65090166-65090185 None:intergenic 50.0%
GTCTAGTAAGAGACCGGGTA+AGG + chr4_2:65090169-65090188 None:intergenic 50.0%
AAATGAGCTCGCGTTGTGGC+GGG + chr4_2:65083577-65083596 None:intergenic 55.0%
GAAATGAGCTCGCGTTGTGG+CGG + chr4_2:65083578-65083597 None:intergenic 55.0%
GTGGCGATGGAGGAAGAAAG+AGG + chr4_2:65083650-65083669 None:intergenic 55.0%
AGAGAGAGAGAGAGTGGCGA+TGG + chr4_2:65083663-65083682 None:intergenic 55.0%
CGAGGATTCTGCGAGAACGA+TGG + chr4_2:65083715-65083734 None:intergenic 55.0%
GTCGCGGAAGTTGTGGAGAT+CGG + chr4_2:65083978-65083997 None:intergenic 55.0%
CTCCACAACTTCCGCGACTT+AGG - chr4_2:65083980-65083999 Msa0615630:three_prime_UTR 55.0%
GCGGTTACCGAAGTTGTTCG+TGG - chr4_2:65084134-65084153 Msa0615630:intron 55.0%
GAAGATCCCTCGGCGTAACT+CGG + chr4_2:65084229-65084248 None:intergenic 55.0%
GTTCATTTCTGCCCCACCAC+CGG - chr4_2:65085499-65085518 Msa0615630:intron 55.0%
TTGTGAAGCTTCCGGTGGTG+GGG + chr4_2:65085513-65085532 None:intergenic 55.0%
CTTGTGAAGCTTCCGGTGGT+GGG + chr4_2:65085514-65085533 None:intergenic 55.0%
ATCGCGGCTTGTGAAGCTTC+CGG + chr4_2:65085521-65085540 None:intergenic 55.0%
ACTGTTCTTGGGAGCTGACC+AGG + chr4_2:65085775-65085794 None:intergenic 55.0%
TGGTCAGCTCCCAAGAACAG+TGG - chr4_2:65085774-65085793 Msa0615630:intron 55.0%
ACTACTGGTCGGGGTTCTTC+TGG - chr4_2:65086458-65086477 Msa0615630:CDS 55.0%
CTACTGGTCGGGGTTCTTCT+GGG - chr4_2:65086459-65086478 Msa0615630:CDS 55.0%
TACTGGTCGGGGTTCTTCTG+GGG - chr4_2:65086460-65086479 Msa0615630:CDS 55.0%
GCAATCTGCTCAGATGCCTG+TGG + chr4_2:65087576-65087595 None:intergenic 55.0%
AGAGGGAAAGGGAACTGGAG+AGG - chr4_2:65088459-65088478 Msa0615630:intron 55.0%
! GGAACTGGAGAGGAAGCGTA+GGG - chr4_2:65088469-65088488 Msa0615630:intron 55.0%
! AACAGCAGGTTGGGCTTCTG+AGG + chr4_2:65088822-65088841 None:intergenic 55.0%
TCAGAAGCCCAACCTGCTGT+TGG - chr4_2:65088821-65088840 Msa0615630:intron 55.0%
GAGTGAGACCAACAGCAGGT+TGG + chr4_2:65088832-65088851 None:intergenic 55.0%
TCAGGAGTGAGACCAACAGC+AGG + chr4_2:65088836-65088855 None:intergenic 55.0%
GCATATGCGCTCCAACCGTT+TGG - chr4_2:65088992-65089011 Msa0615630:intron 55.0%
! AGGGAGCAGGTTTTGCTGCT+AGG - chr4_2:65089644-65089663 Msa0615630:CDS 55.0%
! GGGAGCAGGTTTTGCTGCTA+GGG - chr4_2:65089645-65089664 Msa0615630:CDS 55.0%
GCTGCTAGGGAGACTTGACA+AGG - chr4_2:65089658-65089677 Msa0615630:intron 55.0%
CGGCTCTCCAACTGAAGGTA+TGG + chr4_2:65090004-65090023 None:intergenic 55.0%
TAGCACGGCTCTCCAACTGA+AGG + chr4_2:65090009-65090028 None:intergenic 55.0%
GTGGGTTTGTCCACCTTACC+CGG - chr4_2:65090153-65090172 Msa0615630:five_prime_UTR 55.0%
CGGGAAATGAGCTCGCGTTG+TGG + chr4_2:65083581-65083600 None:intergenic 60.0%
GAGAGAGAGAGTGGCGATGG+AGG + chr4_2:65083660-65083679 None:intergenic 60.0%
CGATTAAGCGGCGGCGTTTG+TGG + chr4_2:65083946-65083965 None:intergenic 60.0%
TTTCTCGCCGAGTTACGCCG+AGG - chr4_2:65084219-65084238 Msa0615630:intron 60.0%
TTCTCGCCGAGTTACGCCGA+GGG - chr4_2:65084220-65084239 Msa0615630:intron 60.0%
GCTTGTGAAGCTTCCGGTGG+TGG + chr4_2:65085515-65085534 None:intergenic 60.0%
CAGGTGAGGCGGCACATGAT+GGG - chr4_2:65087167-65087186 Msa0615630:intron 60.0%
TCAACCTGACCTGACCGACG+AGG - chr4_2:65087351-65087370 Msa0615630:CDS 60.0%
ATCACCTCGTCGGTCAGGTC+AGG + chr4_2:65087358-65087377 None:intergenic 60.0%
CCTGAGCTCAGCGTATGCTG+CGG + chr4_2:65087598-65087617 None:intergenic 60.0%
CCAGTCTGCACAAAGCCAGC+AGG + chr4_2:65087710-65087729 None:intergenic 60.0%
!! CCTGCTGGCTTTGTGCAGAC+TGG - chr4_2:65087707-65087726 Msa0615630:CDS 60.0%
!! GCTGGCTTTGTGCAGACTGG+AGG - chr4_2:65087710-65087729 Msa0615630:CDS 60.0%
! GGGAACTGGAGAGGAAGCGT+AGG - chr4_2:65088468-65088487 Msa0615630:intron 60.0%
! GAGAGGAAGCGTAGGGCTGA+CGG - chr4_2:65088476-65088495 Msa0615630:intron 60.0%
! GCTCGCGTTGTGGCGGGAAA+TGG + chr4_2:65083571-65083590 None:intergenic 65.0%
GCGGCTTGTGAAGCTTCCGG+TGG + chr4_2:65085518-65085537 None:intergenic 65.0%
!! GGTCGGGGTTCTTCTGGGGT+TGG - chr4_2:65086464-65086483 Msa0615630:CDS 65.0%
GCAGGTGAGGCGGCACATGA+TGG - chr4_2:65087166-65087185 Msa0615630:intron 65.0%
CCGCAGCATACGCTGAGCTC+AGG - chr4_2:65087595-65087614 Msa0615630:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 65083556 65090206 65083556 ID=Msa0615630;Name=Msa0615630
chr4_2 mRNA 65083556 65090206 65083556 ID=Msa0615630-mRNA-1;Parent=Msa0615630;Name=Msa0615630-mRNA-1;_AED=0.08;_eAED=0.08;_QI=163|1|1|1|0.82|0.72|18|603|773
chr4_2 exon 65083556 65084116 65083556 ID=Msa0615630-mRNA-1:exon:18400;Parent=Msa0615630-mRNA-1
chr4_2 exon 65084268 65084369 65084268 ID=Msa0615630-mRNA-1:exon:18399;Parent=Msa0615630-mRNA-1
chr4_2 exon 65084659 65084800 65084659 ID=Msa0615630-mRNA-1:exon:18398;Parent=Msa0615630-mRNA-1
chr4_2 exon 65084904 65084975 65084904 ID=Msa0615630-mRNA-1:exon:18397;Parent=Msa0615630-mRNA-1
chr4_2 exon 65085222 65085394 65085222 ID=Msa0615630-mRNA-1:exon:18396;Parent=Msa0615630-mRNA-1
chr4_2 exon 65085948 65086037 65085948 ID=Msa0615630-mRNA-1:exon:18395;Parent=Msa0615630-mRNA-1
chr4_2 exon 65086124 65086183 65086124 ID=Msa0615630-mRNA-1:exon:18394;Parent=Msa0615630-mRNA-1
chr4_2 exon 65086390 65086592 65086390 ID=Msa0615630-mRNA-1:exon:18393;Parent=Msa0615630-mRNA-1
chr4_2 exon 65086670 65086835 65086670 ID=Msa0615630-mRNA-1:exon:18392;Parent=Msa0615630-mRNA-1
chr4_2 exon 65086952 65087160 65086952 ID=Msa0615630-mRNA-1:exon:18391;Parent=Msa0615630-mRNA-1
chr4_2 exon 65087241 65087395 65087241 ID=Msa0615630-mRNA-1:exon:18390;Parent=Msa0615630-mRNA-1
chr4_2 exon 65087531 65087767 65087531 ID=Msa0615630-mRNA-1:exon:18389;Parent=Msa0615630-mRNA-1
chr4_2 exon 65087848 65088086 65087848 ID=Msa0615630-mRNA-1:exon:18388;Parent=Msa0615630-mRNA-1
chr4_2 exon 65088165 65088295 65088165 ID=Msa0615630-mRNA-1:exon:18387;Parent=Msa0615630-mRNA-1
chr4_2 exon 65089463 65089671 65089463 ID=Msa0615630-mRNA-1:exon:18386;Parent=Msa0615630-mRNA-1
chr4_2 exon 65089754 65089863 65089754 ID=Msa0615630-mRNA-1:exon:18385;Parent=Msa0615630-mRNA-1
chr4_2 exon 65089958 65090073 65089958 ID=Msa0615630-mRNA-1:exon:18384;Parent=Msa0615630-mRNA-1
chr4_2 exon 65090094 65090206 65090094 ID=Msa0615630-mRNA-1:exon:18383;Parent=Msa0615630-mRNA-1
chr4_2 five_prime_UTR 65090094 65090206 65090094 ID=Msa0615630-mRNA-1:five_prime_utr;Parent=Msa0615630-mRNA-1
chr4_2 five_prime_UTR 65090024 65090073 65090024 ID=Msa0615630-mRNA-1:five_prime_utr;Parent=Msa0615630-mRNA-1
chr4_2 CDS 65089958 65090023 65089958 ID=Msa0615630-mRNA-1:cds;Parent=Msa0615630-mRNA-1
chr4_2 CDS 65089754 65089863 65089754 ID=Msa0615630-mRNA-1:cds;Parent=Msa0615630-mRNA-1
chr4_2 CDS 65089463 65089671 65089463 ID=Msa0615630-mRNA-1:cds;Parent=Msa0615630-mRNA-1
chr4_2 CDS 65088165 65088295 65088165 ID=Msa0615630-mRNA-1:cds;Parent=Msa0615630-mRNA-1
chr4_2 CDS 65087848 65088086 65087848 ID=Msa0615630-mRNA-1:cds;Parent=Msa0615630-mRNA-1
chr4_2 CDS 65087531 65087767 65087531 ID=Msa0615630-mRNA-1:cds;Parent=Msa0615630-mRNA-1
chr4_2 CDS 65087241 65087395 65087241 ID=Msa0615630-mRNA-1:cds;Parent=Msa0615630-mRNA-1
chr4_2 CDS 65086952 65087160 65086952 ID=Msa0615630-mRNA-1:cds;Parent=Msa0615630-mRNA-1
chr4_2 CDS 65086670 65086835 65086670 ID=Msa0615630-mRNA-1:cds;Parent=Msa0615630-mRNA-1
chr4_2 CDS 65086390 65086592 65086390 ID=Msa0615630-mRNA-1:cds;Parent=Msa0615630-mRNA-1
chr4_2 CDS 65086124 65086183 65086124 ID=Msa0615630-mRNA-1:cds;Parent=Msa0615630-mRNA-1
chr4_2 CDS 65085948 65086037 65085948 ID=Msa0615630-mRNA-1:cds;Parent=Msa0615630-mRNA-1
chr4_2 CDS 65085222 65085394 65085222 ID=Msa0615630-mRNA-1:cds;Parent=Msa0615630-mRNA-1
chr4_2 CDS 65084904 65084975 65084904 ID=Msa0615630-mRNA-1:cds;Parent=Msa0615630-mRNA-1
chr4_2 CDS 65084659 65084800 65084659 ID=Msa0615630-mRNA-1:cds;Parent=Msa0615630-mRNA-1
chr4_2 CDS 65084310 65084369 65084310 ID=Msa0615630-mRNA-1:cds;Parent=Msa0615630-mRNA-1
chr4_2 three_prime_UTR 65084268 65084309 65084268 ID=Msa0615630-mRNA-1:three_prime_utr;Parent=Msa0615630-mRNA-1
chr4_2 three_prime_UTR 65083556 65084116 65083556 ID=Msa0615630-mRNA-1:three_prime_utr;Parent=Msa0615630-mRNA-1
Gene Sequence

>Msa0615630

ATGGATTTGAGCGAAGAAGTTCGACAAGCTCACAAGCGAGAATTCGCTGATTTCTTAGATCAAGATATCGGAAAAAGCATTTACATGGATGAAATCAAAGCTCTAATCAACCACAAACGCCGCCGCTTAATCGTCAACATCTCCGATCTCCACAACTTCCGCGACTTAGGAAACAGGATTTTGAGAAATCCAAGTGAGTATATGCAATCATTTTGTGATGCGGTTACCGAAGTTGTTCGTGGTAGTGATCCAAAGTATTTGAAGGAAGGGGAACAAGTTCTCGTTGGATTTGAAGGTCCTTTTGTTTCTCGCCGAGTTACGCCGAGGGATCTTCTTTCTGAATTTATAGGTTCTATGGTTTGTGTCGAGGGCATTATCACTAAATGTTCTCTCGTAAGGCCAAAGGTTGTTAAAAGTGTTCATTTCTGCCCCACCACCGGAAGCTTCACAAGCCGCGATTATCGCGACATTACATCTAATTTGGGTTTGCCCACAGGATCTGTTTATCCCACAAGGGATGAAAGTGGCAACTTGCTTGTGACCGAGTATGGAATGTGCAAATACAAGGATCATCAAACCTTGTCCATGCAGGAAGTTCCTGAAAATTCTGCACCTGGTCAGCTCCCAAGAACAGTGGATATCATAGCAGAGGATGACCTCGTTGATTCTTGCAAGCCTGGCGATCGTGTAGCTATTGTTGGGATATATAAGGCTCTTCCAGGAAAAAGCAAAGGCAGTGTGAATGGTGTATTCAGGACTGTGCTCATAGCCAACAATGTATCTCTTCTCAACAAAGAGGCTAATGCTCCAATCTACAGCCCTGAAGACCTTAAAAACATTAAAAAGATAGCTGAAAGGGATGATACATTTGATCTGCTCGGTAATTCACTTGCACCTTCTATACATGGCCATTCTTGGATAAAGAAAGCAGTGATTTTATTGATGCTTGGTGGAGTGGAGAAGAACCTAAAGAATGGAACTCATTTGAGAGGTGACATTAATATGATGATGGTTGGTGATCCATCTGTTGCCAAGTCTCAACTCTTGAGAGCAATTATGAATATTGCTCCCTTAGCCATATCAACTACTGGTCGGGGTTCTTCTGGGGTTGGTTTGACAGCAGCAGTTACTTCAGATCAAGAAACAGGAGAAAGAAGGTTAGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGTGTTGTCTGCATTGATGAATTTGACAAAATGAATGATCAAGATCGTGTAGCTATACACGAAGTTATGGAACAGCAGACCGTAACTATTGCTAAAGCTGGGATCCATGCCTCACTTAATGCTCGTTGCAGTGTGGTGGCAGCTGCAAATCCCATATATGGAACTTATGATCGTTCACTGACTCCAACTAAAAATATTGGACTACCGGACTCTTTGCTTTCTCGATTTGATCTGTTGTTTATTGTGTTGGACCAAATGGATCCTGATATTGATCGCCAAATATCAGAGCACGTCCTGCGTATGCATCGATTTCGTTCTGCCATTGATGGAGGTGAGGCGGCACATGATGGGAGTGCTAGATATGGAAGAGAAGAGGAAGCTGATACTGAATCATCTGTCTTTGTCAAATATAACAGAATGCTACATGGAAAGAAAACTGACAGAGGTCGCAAACGCGATACACTTACGATTAAGTTCCTGAAAAAGTATATCCATTATGCTAAGCATAGGATTCAACCTGACCTGACCGACGAGGCATCTGAGCAGATTGCCGCAGCATACGCTGAGCTCAGGAATGCAAAGTCAAATGCGAAGACTGGAGGAACACTTCCAATAACTGCCAGAACTTTAGAAACTATAATACGTCTCTCAACTGCTCATGCCAAATTGAAGTTGAGCAGAAAGGTTTCAAAGTCTGATGTTGATGCTGCGTTGAAGATTCTGAATTTTGCAATATATCATAAAGAACTGACAGAAATGGATGAGCGTGAAGAAGAGAGGGAAAGGGAACTGGAGAGGAAGCGTAGGGCTGACGGTGAAAATGATGGTCCTGACCATGGTTCTAAAAGTAAAAGAAACTCAACATCAGATGCCATGGAAGTAGACGATACCTCAGAAGCCCAACCTGCTGTTGGTCTCACTCCTGAAAGAATTGAAGCATTCAATTCCCTATTTGGTCAGCATATGCGCTCCAACCGTTTGGATCAAATACCTATTGCAGACATAGAGGATGCTATCAATAGAGGGGCAAGTTCCACTTACAGCTCTGCAGATGTATTGCTCCTGTTAGAGAAGTTGCAAGAAGACAATAGATTAATGATAGCTGATGGAATAGTGCATATGGTATCATAA
Protein sequence

>Msa0615630

MDLSEEVRQAHKREFADFLDQDIGKSIYMDEIKALINHKRRRLIVNISDLHNFRDLGNRILRNPSEYMQSFCDAVTEVVRGSDPKYLKEGEQVLVGFEGPFVSRRVTPRDLLSEFIGSMVCVEGIITKCSLVRPKVVKSVHFCPTTGSFTSRDYRDITSNLGLPTGSVYPTRDESGNLLVTEYGMCKYKDHQTLSMQEVPENSAPGQLPRTVDIIAEDDLVDSCKPGDRVAIVGIYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIHGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRQISEHVLRMHRFRSAIDGGEAAHDGSARYGREEEADTESSVFVKYNRMLHGKKTDRGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASEQIAAAYAELRNAKSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVDAALKILNFAIYHKELTEMDEREEERERELERKRRADGENDGPDHGSKSKRNSTSDAMEVDDTSEAQPAVGLTPERIEAFNSLFGQHMRSNRLDQIPIADIEDAINRGASSTYSSADVLLLLEKLQEDNRLMIADGIVHMVS*