AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0647050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0647050 MtrunA17_Chr4g0035581 99.403 838 5 0 44 881 1 838 0.0 1719
Msa0647050 MtrunA17_Chr8g0381871 36.177 586 324 10 240 784 77 653 4.42e-115 371
Msa0647050 MtrunA17_Chr7g0269941 39.726 584 313 13 271 843 144 699 3.25e-113 362
Msa0647050 MtrunA17_Chr2g0296441 34.076 628 358 12 196 784 34 644 3.74e-110 356
Msa0647050 MtrunA17_Chr4g0052131 33.997 653 352 13 184 784 17 642 4.81e-109 353
Msa0647050 MtrunA17_Chr4g0065401 35.085 647 363 14 213 831 68 685 1.05e-105 343
Msa0647050 MtrunA17_Chr4g0068511 34.370 611 347 10 195 780 238 819 1.08e-102 340
Msa0647050 MtrunA17_Chr7g0263661 32.576 660 364 19 221 813 87 732 1.15e-90 305
Msa0647050 MtrunA17_Chr2g0279361 31.188 606 364 15 211 789 41 620 6.27e-75 258
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0647050 AT2G16440.1 72.938 861 194 8 44 880 1 846 0.0 1234
Msa0647050 AT5G44635.1 36.860 586 327 11 247 798 89 665 6.95e-117 376
Msa0647050 AT5G44635.2 34.483 696 390 15 137 798 2 665 1.26e-116 376
Msa0647050 AT4G02060.2 37.713 586 324 12 270 843 141 697 5.02e-108 349
Msa0647050 AT4G02060.1 37.713 586 324 12 270 843 141 697 5.02e-108 349
Msa0647050 AT1G44900.2 34.049 652 355 16 164 780 210 821 3.46e-106 350
Msa0647050 AT1G44900.1 34.049 652 355 16 164 780 212 823 3.83e-106 350
Msa0647050 AT2G07690.1 34.545 660 375 13 213 844 64 694 5.79e-105 341
Msa0647050 AT5G46280.3 31.776 642 373 9 192 789 19 639 7.34e-105 340
Msa0647050 AT5G46280.1 31.776 642 373 9 192 789 19 639 4.55e-104 340
Msa0647050 AT2G07690.2 34.545 660 373 14 213 844 64 692 2.20e-103 337
Msa0647050 AT5G46280.2 32.045 621 357 9 192 768 19 618 2.55e-102 331
Msa0647050 AT5G46280.4 32.689 569 319 8 192 716 19 567 1.96e-94 308
Msa0647050 AT3G09660.3 32.895 608 342 18 259 813 131 725 3.75e-90 303
Msa0647050 AT3G09660.2 32.787 610 343 17 259 813 131 728 7.53e-90 301
Msa0647050 AT3G09660.1 32.733 611 342 18 259 813 131 728 1.18e-89 302
Msa0647050 AT2G14050.1 32.252 524 305 14 283 789 131 621 3.66e-69 242
Msa0647050 AT2G14050.2 32.252 524 305 14 283 789 131 621 4.21e-69 242

Find 254 sgRNAs with CRISPR-Local

Find 430 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATAGCTTCCCTGATTTC+TGG 0.179319 4_3:+53014687 None:intergenic
GCAGACAAAGACAGCCTTTC+AGG 0.187389 4_3:+53010507 None:intergenic
TATACAGTTTCGCCTGTTTC+AGG 0.188846 4_3:+53012774 None:intergenic
CGCTGGTCCTACTTACGTTT+GGG 0.193459 4_3:-53015247 Msa0647050:CDS
TCATCAAATAAAACTTCTTC+TGG 0.231583 4_3:+53013268 None:intergenic
GGGACGTTCCATGCGGTTAT+TGG 0.232963 4_3:-53011058 Msa0647050:CDS
CTGACGGCGGCGACGGCGGC+CGG 0.254563 4_3:+53015461 None:intergenic
TTGTGGGTGTATGTGCTTTC+GGG 0.277631 4_3:+53011709 None:intergenic
ATCATGGAGAAGATGCAAAT+TGG 0.278435 4_3:-53011081 Msa0647050:CDS
GACGGCGGCGACGGCGGCCG+GGG 0.286155 4_3:+53015463 None:intergenic
CCGAATAATCATTCCCTTCA+TGG 0.292850 4_3:+53014725 None:intergenic
TTCGCCTGTTTCAGGATCTT+TGG 0.293183 4_3:+53012782 None:intergenic
GGTGGAGGCATTTCGGCTTC+TGG 0.293566 4_3:-53011313 Msa0647050:CDS
TGACGGCGGCGACGGCGGCC+GGG 0.296786 4_3:+53015462 None:intergenic
GTCAGCCTTTCATAGATATC+TGG 0.298464 4_3:+53013131 None:intergenic
TATTGTTTCCCTGCACTATA+AGG 0.304910 4_3:-53011891 Msa0647050:CDS
ATGAGGAATTTGAATCCTTC+TGG 0.314341 4_3:-53014871 Msa0647050:intron
TAGAGAATTGATAGCTAAAA+TGG 0.316624 4_3:+53010645 None:intergenic
AGTCACTGGCGCCAAACATC+TGG 0.319935 4_3:-53013106 Msa0647050:CDS
TGATGATTTGGATATGGATT+TGG 0.321742 4_3:-53015136 Msa0647050:CDS
AACAAGTGTCATCGAATTCT+TGG 0.324058 4_3:+53014478 None:intergenic
TTACCTCTCTCCACCGGAAC+CGG 0.337220 4_3:+53014633 None:intergenic
GATCAAACAGGTTATTGAAT+TGG 0.344653 4_3:-53015088 Msa0647050:CDS
CGCGGTGGCGGCATCCCTTC+CGG 0.345532 4_3:-53015354 Msa0647050:CDS
ACGCTGGTCCTACTTACGTT+TGG 0.346859 4_3:-53015248 Msa0647050:CDS
TGGTGATGATGATTTGGATA+TGG 0.355491 4_3:-53015142 Msa0647050:CDS
GCTCGATTATACCAGAAATC+AGG 0.362038 4_3:-53014698 Msa0647050:CDS
TAAACAAATTGTGAGGCTTC+AGG 0.364258 4_3:-53013740 Msa0647050:CDS
GGAGATGTAACTGCGAAATA+TGG 0.366761 4_3:+53015742 None:intergenic
ATTCTCCTTGTTGGTGATCC+TGG 0.367312 4_3:-53012909 Msa0647050:CDS
CTTCTTCTGGATTTCTGCCC+TGG 0.368125 4_3:+53013281 None:intergenic
ATTCTGCTCTGACCCGGTTC+CGG 0.375919 4_3:-53014646 Msa0647050:CDS
GTGTGAGGCGTTCCTCCTTC+AGG 0.376780 4_3:+53013700 None:intergenic
TCATGGAGAAGATGCAAATT+GGG 0.382324 4_3:-53011080 Msa0647050:CDS
TCAAGGTGGTGATGATGATT+TGG 0.385708 4_3:-53015148 Msa0647050:CDS
ATGATGTGGTGGAGGCATTT+CGG 0.391101 4_3:-53011320 Msa0647050:CDS
GTTTGGATAACTACCAGTTC+TGG 0.391486 4_3:+53011260 None:intergenic
CATGACAAACTGGTGGATAC+TGG 0.399287 4_3:-53013661 Msa0647050:CDS
AATTTACTTAATGCTTGATA+AGG 0.399930 4_3:-53011948 Msa0647050:CDS
GTTGTGGGTGTATGTGCTTT+CGG 0.401989 4_3:+53011708 None:intergenic
TCTGTTCGGTTGAGGAGTTC+CGG 0.403298 4_3:+53015425 None:intergenic
GTCGTAACCGTCACCGCCTT+CGG 0.403939 4_3:+53015278 None:intergenic
CTTGCTATTGCATGACAAAC+TGG 0.407456 4_3:-53013671 Msa0647050:CDS
GCTGCTGATGAATTGATTAC+AGG 0.407975 4_3:-53011674 Msa0647050:CDS
AGTGAGGAGAAGAGTGAGAA+TGG 0.408822 4_3:+53015721 None:intergenic
TCTCATAACTACTGGTGTTT+CGG 0.408833 4_3:-53011154 Msa0647050:CDS
ATCAGGTGACTGGTATATAC+AGG 0.409169 4_3:-53013537 Msa0647050:intron
GTTGGCAATTGGACTTGAAT+TGG 0.411791 4_3:+53015497 None:intergenic
ATTCTCCGGAAGTAGCAAAA+AGG 0.412222 4_3:-53011624 Msa0647050:intron
GTGCAGGGAAACAATATGTT+TGG 0.417678 4_3:+53011898 None:intergenic
GAAGAGTAGGTGTTGGCAAT+TGG 0.419079 4_3:+53015486 None:intergenic
TATACAGGGCTATGAGTGTC+AGG 0.419389 4_3:-53013522 Msa0647050:CDS
CCATGAAGGGAATGATTATT+CGG 0.419432 4_3:-53014725 Msa0647050:CDS
GAGGTGGAAGTTGGTGTGGC+GGG 0.419704 4_3:+53015321 None:intergenic
TCCCGTCACCGTCGCGGTGG+CGG 0.428025 4_3:-53015366 Msa0647050:CDS
AATGCTTTGAAGTTGGCATC+TGG 0.429342 4_3:-53012957 Msa0647050:CDS
TCATCTAGCTCCCAGATGTT+TGG 0.433147 4_3:+53013095 None:intergenic
GCGGGGACACGGCGGCCGGA+AGG 0.434368 4_3:+53015339 None:intergenic
AATCTCAGCCCAGAATGTTC+TGG 0.437051 4_3:-53015790 Msa0647050:exon
AAGTTGGTGTGGCGGGGACA+CGG 0.438937 4_3:+53015328 None:intergenic
GAAGGATTTGTTTCCATGGC+TGG 0.441340 4_3:-53010768 Msa0647050:CDS
TAGCATCCTCAACCAGCATC+CGG 0.442650 4_3:+53013320 None:intergenic
CGATGAGGCAGGGCCATCAT+TGG 0.444334 4_3:-53010721 Msa0647050:three_prime_UTR
CACCGAAGTCCTTGCATTGA+GGG 0.444534 4_3:+53012360 None:intergenic
GCCGCCACCGCGACGGTGAC+GGG 0.446386 4_3:+53015365 None:intergenic
CCTCATAATCCTTATAGTGC+AGG 0.451180 4_3:+53011882 None:intergenic
CAGCTTCATCTGATAGTTGT+GGG 0.452578 4_3:+53011693 None:intergenic
GACATCAAAGTCCCGGATGC+TGG 0.459233 4_3:-53013332 Msa0647050:CDS
ACGGCGGCGACGGCGGCCGG+GGG 0.461201 4_3:+53015464 None:intergenic
CGGGGACACGGCGGCCGGAA+GGG 0.461290 4_3:+53015340 None:intergenic
ATATGTATCACGGCAAGGGC+CGG 0.462053 4_3:+53010621 None:intergenic
TACCTCGGTCGCTCAAAACT+AGG 0.463388 4_3:+53012654 None:intergenic
AAATCAGGGAAGCTATATTC+AGG 0.467213 4_3:-53014683 Msa0647050:CDS
GCATCTGGCGCTAGCTTTCG+TGG 0.468482 4_3:-53012942 Msa0647050:CDS
GGAATCCATTGGAGTGGAAT+CGG 0.468602 4_3:+53015640 None:intergenic
TTAAGATGAATTTCGCTGCC+AGG 0.469150 4_3:+53010921 None:intergenic
CAGCGAAGGATTTGTTTCCA+TGG 0.470604 4_3:-53010772 Msa0647050:CDS
TTGAAAAGCATGTTCAAACT+AGG 0.472903 4_3:-53014921 Msa0647050:CDS
GATATAAATATTCTCCTTGT+TGG 0.474086 4_3:-53012918 Msa0647050:CDS
TCGGATTCGCTTCTCAGAAT+CGG 0.474303 4_3:-53011432 Msa0647050:intron
CCTCCTTCAGGTATCTCGTC+AGG 0.476130 4_3:+53013712 None:intergenic
GTGGCCAAAGATCCTGAAAC+AGG 0.477237 4_3:-53012786 Msa0647050:CDS
GAAGTGATACGAACCATTGT+TGG 0.478141 4_3:+53015619 None:intergenic
GGATTATATCGTGAACCGCT+AGG 0.481496 4_3:+53012322 None:intergenic
CCTGCACTATAAGGATTATG+AGG 0.483526 4_3:-53011882 Msa0647050:intron
CAATGCAAGGACTTCGGTGT+TGG 0.484227 4_3:-53012356 Msa0647050:CDS
TGAACCTACTGTTTGCTTGA+GGG 0.484828 4_3:-53014513 Msa0647050:CDS
AAAGAAAGGTCTTCTTTGCC+AGG 0.485292 4_3:-53013069 Msa0647050:intron
TTGGAATTGTCCGGTGAAGA+AGG 0.487245 4_3:+53015516 None:intergenic
GGCATTTACACCAGTGGAAG+GGG 0.488022 4_3:-53012837 Msa0647050:CDS
GATTATATCGTGAACCGCTA+GGG 0.498770 4_3:+53012323 None:intergenic
GTATGAGAAATTGATCAAAC+AGG 0.500686 4_3:-53015100 Msa0647050:CDS
TATGTATCACGGCAAGGGCC+GGG 0.500851 4_3:+53010622 None:intergenic
GATATGGATTTGGATATTGA+AGG 0.501917 4_3:-53015126 Msa0647050:CDS
GATTTGTGAAAACGCGGGAA+TGG 0.502495 4_3:+53015671 None:intergenic
GACATGGATCTCATAACTAC+TGG 0.502893 4_3:-53011162 Msa0647050:CDS
TGCCGCCACCGCGACGGTGA+CGG 0.505545 4_3:+53015364 None:intergenic
GGACTTGAATTGGAATTGTC+CGG 0.506755 4_3:+53015507 None:intergenic
GAACCATTGTTGGAATCCAT+TGG 0.507852 4_3:+53015629 None:intergenic
CATAGGAAAGTCTTCGGAGG+TGG 0.508882 4_3:+53015305 None:intergenic
TGTGGCGGGGACACGGCGGC+CGG 0.509446 4_3:+53015335 None:intergenic
AATAGACTCTCAATCTGCCT+TGG 0.512928 4_3:+53011476 None:intergenic
GACTTAACAGTTCTCTGAGT+TGG 0.513256 4_3:+53013493 None:intergenic
GGCTTCCGATTCCACTCCAA+TGG 0.513615 4_3:-53015645 Msa0647050:CDS
ATGTCTTCCGAAGGCGGTGA+CGG 0.514504 4_3:-53015285 Msa0647050:CDS
TTGACTGACGGCGGCGACGG+CGG 0.515146 4_3:+53015457 None:intergenic
GAACATGGAGCAGGATGTGT+TGG 0.515298 4_3:-53011765 Msa0647050:CDS
AAGCGAGATCTGTTCGGTTG+AGG 0.515557 4_3:+53015417 None:intergenic
TGAGAGGATGGTATCCATGA+AGG 0.515734 4_3:-53014739 Msa0647050:CDS
AGACACTCGCAACATGATCA+TGG 0.516681 4_3:-53011097 Msa0647050:CDS
GTTGTCAATGACAGACAAGC+GGG 0.516945 4_3:+53012300 None:intergenic
ACGTTCCATGCGGTTATTGG+AGG 0.517993 4_3:-53011055 Msa0647050:intron
CTGGTGGATACTGGAAAGCC+AGG 0.518819 4_3:-53013652 Msa0647050:CDS
TTCCCTCAATGCAAGGACTT+CGG 0.519427 4_3:-53012362 Msa0647050:CDS
AATTAATTAACAGGTAATAA+CGG 0.521998 4_3:-53011504 Msa0647050:intron
CAGTCCCCTAAAACCAATGA+TGG 0.522574 4_3:+53010708 None:intergenic
TGAGAAATGAGAAGTGAGTG+AGG 0.522868 4_3:+53015705 None:intergenic
AGAACATGATACGATGAGGC+AGG 0.523084 4_3:-53010732 Msa0647050:exon
ATGTAACTGCGAAATATGGC+GGG 0.525257 4_3:+53015746 None:intergenic
CATGGAAACAAATCCTTCGC+TGG 0.526272 4_3:+53010773 None:intergenic
TATGGAGGTTGACAATGGCC+AGG 0.526806 4_3:-53013299 Msa0647050:CDS
ATTACGACTTAGTGAAGCAT+TGG 0.527011 4_3:-53011456 Msa0647050:CDS
TAATTGACTGACGGCGGCGA+CGG 0.527429 4_3:+53015454 None:intergenic
GGAAGACATAGGAAAGTCTT+CGG 0.527650 4_3:+53015299 None:intergenic
CGTCAGTCAATTACTCCATC+CGG 0.529277 4_3:-53015444 Msa0647050:CDS
TTTGTTGTATATCAGGTGAC+TGG 0.529577 4_3:-53013547 Msa0647050:intron
AGCTGCGACTTGCTTGTACC+AGG 0.531962 4_3:+53012891 None:intergenic
TTTCGGCAAGCGAAAGGATG+AGG 0.535401 4_3:-53011137 Msa0647050:CDS
GGAGGTGGAAGTTGGTGTGG+CGG 0.538345 4_3:+53015320 None:intergenic
TACCTCTCTCCACCGGAACC+GGG 0.539167 4_3:+53014634 None:intergenic
TAAGATGAATTTCGCTGCCA+GGG 0.539727 4_3:+53010922 None:intergenic
AGCCACAGACTTACTTGCAT+CGG 0.543317 4_3:+53014450 None:intergenic
GAATTGATAGCTAAAATGGT+TGG 0.544677 4_3:+53010649 None:intergenic
CTGCTCTGACCCGGTTCCGG+TGG 0.545661 4_3:-53014643 Msa0647050:CDS
GCAGCTTCATCTGATAGTTG+TGG 0.546328 4_3:+53011692 None:intergenic
TCTGCAATGGATACCAGAAC+TGG 0.546883 4_3:-53011273 Msa0647050:intron
TCACGAATTGTATAGTAAGA+TGG 0.547022 4_3:-53015019 Msa0647050:CDS
CTGAACCTACTGTTTGCTTG+AGG 0.548909 4_3:-53014514 Msa0647050:CDS
CTCACCTCAACTCTGTCACC+TGG 0.549979 4_3:+53013634 None:intergenic
CGACGGTGACGGGAGGGAGT+TGG 0.552628 4_3:+53015375 None:intergenic
ATATTCAGGTGTCTAGTATG+TGG 0.553917 4_3:-53014669 Msa0647050:CDS
AGGGGTAGGGGAAAATTCTC+CGG 0.554199 4_3:-53011638 Msa0647050:CDS
TGGAGTGGAATCGGAAGCCA+TGG 0.554448 4_3:+53015649 None:intergenic
CTCGATTATACCAGAAATCA+GGG 0.554479 4_3:-53014697 Msa0647050:CDS
GAAGCGAAGCGAGATCTGTT+CGG 0.554490 4_3:+53015411 None:intergenic
CTCATAATCCTTATAGTGCA+GGG 0.554579 4_3:+53011883 None:intergenic
AGCATCCTCAACCAGCATCC+GGG 0.555444 4_3:+53013321 None:intergenic
AAACAGGTTATTGAATTGGA+AGG 0.555576 4_3:-53015084 Msa0647050:CDS
TTCGGTTGAGGAGTTCCGGA+TGG 0.556982 4_3:+53015429 None:intergenic
AAGTCTTCGGAGGTGGAAGT+TGG 0.558625 4_3:+53015312 None:intergenic
AGGTGGAAGTTGGTGTGGCG+GGG 0.559665 4_3:+53015322 None:intergenic
TATAATATGTATCACGGCAA+GGG 0.559890 4_3:+53010617 None:intergenic
GTCACTGGCGCCAAACATCT+GGG 0.560062 4_3:-53013105 Msa0647050:CDS
GAGCTAGATGATGTAAAGAA+AGG 0.560591 4_3:-53013083 Msa0647050:CDS
GATGCTGGTTGAGGATGCTA+TGG 0.564286 4_3:-53013317 Msa0647050:CDS
GCTGGTCCTACTTACGTTTG+GGG 0.565826 4_3:-53015246 Msa0647050:CDS
AATCTTCAGGTTCTTGAGAG+TGG 0.565854 4_3:-53012680 Msa0647050:intron
ATGTGGATTCTGCTCTGACC+CGG 0.565866 4_3:-53014652 Msa0647050:CDS
ACACCGAAGTCCTTGCATTG+AGG 0.566072 4_3:+53012359 None:intergenic
ATGTTTGGCAAGTCGTCGGT+CGG 0.570550 4_3:+53011913 None:intergenic
GACTTAGTGAAGCATTGGCT+CGG 0.572654 4_3:-53011451 Msa0647050:CDS
CTTCACAGGAACTATTGACA+TGG 0.572711 4_3:-53011178 Msa0647050:intron
GAGAGGATGGTATCCATGAA+GGG 0.572804 4_3:-53014738 Msa0647050:CDS
AAAGTCCCGGATGCTGGTTG+AGG 0.573038 4_3:-53013326 Msa0647050:CDS
GCCAACACCTACTCTTCCCC+CGG 0.576013 4_3:-53015480 Msa0647050:CDS
CTGGTCCTACTTACGTTTGG+GGG 0.577318 4_3:-53015245 Msa0647050:CDS
ACCTCGGTCGCTCAAAACTA+GGG 0.578032 4_3:+53012655 None:intergenic
ATATAATATGTATCACGGCA+AGG 0.580024 4_3:+53010616 None:intergenic
ACTCCAATGGATTCCAACAA+TGG 0.580647 4_3:-53015632 Msa0647050:intron
CTGGTGTTTCGGCAAGCGAA+AGG 0.580745 4_3:-53011143 Msa0647050:CDS
GACTTTCCTATGTCTTCCGA+AGG 0.581474 4_3:-53015294 Msa0647050:CDS
TGCAATGCAGCAATCTGCAA+TGG 0.581576 4_3:-53011286 Msa0647050:CDS
ACAAACTGTTTCAATAGCAA+AGG 0.582486 4_3:-53012398 Msa0647050:CDS
ACAAAATGTCTGACAATGCA+AGG 0.583185 4_3:-53012610 Msa0647050:CDS
CAATATGTTTGGCAAGTCGT+CGG 0.583594 4_3:+53011909 None:intergenic
GGGAGTTGGAGTTGCATCGG+AGG 0.584264 4_3:+53015389 None:intergenic
ATATGGATTTGGATATTGAA+GGG 0.585173 4_3:-53015125 Msa0647050:CDS
AAGGGATGCCGCCACCGCGA+CGG 0.585884 4_3:+53015358 None:intergenic
AGGTAATAACGGCAACTCCA+AGG 0.585966 4_3:-53011493 Msa0647050:CDS
GTTGCTACTCTCGCCAGCGA+AGG 0.586679 4_3:-53010786 Msa0647050:CDS
TGAAAGGCTGACAAAGTCAC+TGG 0.588015 4_3:-53013120 Msa0647050:CDS
ATGTGAATGATGCGATTCAG+AGG 0.592525 4_3:-53015203 Msa0647050:CDS
GACCCGGTTCCGGTGGAGAG+AGG 0.592602 4_3:-53014636 Msa0647050:intron
TTAGCTATCAATTCTCTACC+CGG 0.592613 4_3:-53010640 Msa0647050:three_prime_UTR
TGGCATTTACACCAGTGGAA+GGG 0.592837 4_3:-53012838 Msa0647050:CDS
ACTGTTTCAATAGCAAAGGC+AGG 0.593633 4_3:-53012394 Msa0647050:CDS
ATTGTTGGAATCCATTGGAG+TGG 0.594571 4_3:+53015634 None:intergenic
AACAACCAGATATCTATGAA+AGG 0.595448 4_3:-53013136 Msa0647050:CDS
TCACCGCCTTCGGAAGACAT+AGG 0.595656 4_3:+53015288 None:intergenic
GGTTGGATTGACTGCTTACG+TGG 0.597160 4_3:-53012805 Msa0647050:CDS
TCAGCCCAGAATGTTCTGGC+GGG 0.598275 4_3:-53015786 Msa0647050:exon
ATGTCATATAATATGTATCA+CGG 0.598386 4_3:+53010611 None:intergenic
TTCGGAGGTGGAAGTTGGTG+TGG 0.598589 4_3:+53015317 None:intergenic
CCACGTGGCATTTACACCAG+TGG 0.599464 4_3:-53012843 Msa0647050:CDS
CATGGAGAAGATGCAAATTG+GGG 0.599489 4_3:-53011079 Msa0647050:CDS
GGAGGGAGTTGGAGTTGCAT+CGG 0.599672 4_3:+53015386 None:intergenic
TTATTGCTTCCCTCAATGCA+AGG 0.600052 4_3:-53012369 Msa0647050:CDS
GTCTCAGGTGGCTAAACTGA+AGG 0.601377 4_3:-53013168 Msa0647050:intron
TGGACAAAAGAGTGGGAGGA+AGG 0.601830 4_3:+53012272 None:intergenic
GCCACCGCGACGGTGACGGG+AGG 0.601956 4_3:+53015368 None:intergenic
ATAATCGCAGAACATGGAGC+AGG 0.602269 4_3:-53011774 Msa0647050:intron
GAACTAAAGAATCAGAGCCC+TGG 0.602624 4_3:-53010939 Msa0647050:CDS
CCCTCCCGTCACCGTCGCGG+TGG 0.603758 4_3:-53015369 Msa0647050:CDS
GCTGGTTGAGGATGCTATGG+AGG 0.604167 4_3:-53013314 Msa0647050:CDS
TTTCCTATGTCTTCCGAAGG+CGG 0.605752 4_3:-53015291 Msa0647050:CDS
GATGTAACTGCGAAATATGG+CGG 0.606682 4_3:+53015745 None:intergenic
AGGCGGTGACGGTTACGACA+TGG 0.606889 4_3:-53015274 Msa0647050:CDS
CTCAGCCCAGAATGTTCTGG+CGG 0.609809 4_3:-53015787 Msa0647050:exon
GTGGCATTTACACCAGTGGA+AGG 0.610034 4_3:-53012839 Msa0647050:CDS
TTACTGATAAACAAATTGTG+AGG 0.611797 4_3:-53013747 Msa0647050:CDS
ATGGAGGTTGACAATGGCCA+GGG 0.614550 4_3:-53013298 Msa0647050:CDS
TTGGTGTGGCGGGGACACGG+CGG 0.616538 4_3:+53015331 None:intergenic
AACTAACCTGGACAAAAGAG+TGG 0.626323 4_3:+53012264 None:intergenic
CCACCGCGACGGTGACGGGA+GGG 0.628987 4_3:+53015369 None:intergenic
AGCAATGTGAGAAGCTACAA+TGG 0.629974 4_3:+53010485 None:intergenic
GTGTAATTACCTCTCTCCAC+CGG 0.632724 4_3:+53014627 None:intergenic
CATCAATGCAACAGATACCT+CGG 0.632974 4_3:+53012639 None:intergenic
ACTCCCTCCCGTCACCGTCG+CGG 0.633038 4_3:-53015372 Msa0647050:CDS
GAACATGATACGATGAGGCA+GGG 0.638898 4_3:-53010731 Msa0647050:exon
AAAATGGCAAGCACCTCGAG+AGG 0.640166 4_3:+53014988 None:intergenic
GCCATGGATTTGTGAAAACG+CGG 0.640208 4_3:+53015665 None:intergenic
AAAGCCAGGTGACAGAGTTG+AGG 0.641668 4_3:-53013638 Msa0647050:intron
TCTTCCCTCAAGCAAACAGT+AGG 0.642149 4_3:+53014509 None:intergenic
CGGATGGAGTAATTGACTGA+CGG 0.644437 4_3:+53015445 None:intergenic
CCATGGATTTGTGAAAACGC+GGG 0.647721 4_3:+53015666 None:intergenic
TCAGGTGACTGGTATATACA+GGG 0.649445 4_3:-53013536 Msa0647050:intron
AACCTGGACAAAAGAGTGGG+AGG 0.651252 4_3:+53012268 None:intergenic
TAATACCTCCAATAACCGCA+TGG 0.653841 4_3:+53011050 None:intergenic
TTGGCTTGCGCAAACCCTAG+CGG 0.658205 4_3:-53012337 Msa0647050:CDS
ACTAACCTGGACAAAAGAGT+GGG 0.661844 4_3:+53012265 None:intergenic
ACACCTGACGAGATACCTGA+AGG 0.663788 4_3:-53013715 Msa0647050:CDS
GATGGTGAGGTATCCTCTCG+AGG 0.666004 4_3:-53015001 Msa0647050:CDS
AATAGCAAGCTAACAGTGTG+AGG 0.667908 4_3:+53013685 None:intergenic
GCTATTGCATGACAAACTGG+TGG 0.668028 4_3:-53013668 Msa0647050:CDS
TTAAGAGCGCAACTTCAATG+AGG 0.672013 4_3:-53014888 Msa0647050:CDS
TGTTGTCAATGACAGACAAG+CGG 0.675119 4_3:+53012299 None:intergenic
AATTGTATAGTAAGATGGTG+AGG 0.675670 4_3:-53015014 Msa0647050:CDS
ATACAGGGCTATGAGTGTCA+GGG 0.676940 4_3:-53013521 Msa0647050:CDS
TGTAACTGCGAAATATGGCG+GGG 0.677055 4_3:+53015747 None:intergenic
TTGTACCAGGATCACCAACA+AGG 0.678899 4_3:+53012904 None:intergenic
GCATTTACACCAGTGGAAGG+GGG 0.685959 4_3:-53012836 Msa0647050:CDS
GGGGACTAACATTAGCGTGG+AGG 0.686321 4_3:-53015226 Msa0647050:CDS
AGGGCTATGAGTGTCAGGGT+AGG 0.695713 4_3:-53013517 Msa0647050:CDS
AGACATAGGAAAGTCTTCGG+AGG 0.703963 4_3:+53015302 None:intergenic
GGTTACGACATGGATGACGC+TGG 0.706192 4_3:-53015264 Msa0647050:CDS
GATGCTATGGAGGTTGACAA+TGG 0.706325 4_3:-53013304 Msa0647050:CDS
TTGTCAATGACAGACAAGCG+GGG 0.713062 4_3:+53012301 None:intergenic
CCTGACGAGATACCTGAAGG+AGG 0.715290 4_3:-53013712 Msa0647050:CDS
ATGGAGAAGATGCAAATTGG+GGG 0.717552 4_3:-53011078 Msa0647050:CDS
TGCAAGGAGCATGTTACACG+AGG 0.719897 4_3:-53012594 Msa0647050:intron
ATGGAGTAATTGACTGACGG+CGG 0.731099 4_3:+53015448 None:intergenic
CCACTGGTGTAAATGCCACG+TGG 0.732070 4_3:+53012843 None:intergenic
AAAATACTAATAAACTAACG+AGG 0.766844 4_3:+53010568 None:intergenic
ATACACAAACTTTCTCCACG+TGG 0.768452 4_3:-53012858 Msa0647050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTCTCTTTAAAAATAAA+TGG - chr4_3:53014090-53014109 Msa0647050:intron 10.0%
!!! TTAGTTTATTAGTATTTTTT+TGG - chr4_3:53015567-53015586 Msa0647050:intron 10.0%
!!! TAGTTTATTAGTATTTTTTT+GGG - chr4_3:53015568-53015587 Msa0647050:intron 10.0%
!! AATTAATTAACAGGTAATAA+CGG - chr4_3:53014626-53014645 Msa0647050:intron 15.0%
!!! CTATTTTTTATATACAAATC+AGG + chr4_3:53014748-53014767 None:intergenic 15.0%
!! TTAGTCATATATAGTTTATT+TGG + chr4_3:53014922-53014941 None:intergenic 15.0%
!! ATATAGCATACATAATGTAA+GGG + chr4_3:53011864-53011883 None:intergenic 20.0%
!! TATATAGCATACATAATGTA+AGG + chr4_3:53011865-53011884 None:intergenic 20.0%
!!! AGTTTTATTTGATGAAGAAA+AGG - chr4_3:53012870-53012889 Msa0647050:CDS 20.0%
!! AATTTACTTAATGCTTGATA+AGG - chr4_3:53014182-53014201 Msa0647050:intron 20.0%
!! CTGTTAATTAATTGATAGAT+AGG + chr4_3:53014619-53014638 None:intergenic 20.0%
!! CTATCTATCAATTAATTAAC+AGG - chr4_3:53014617-53014636 Msa0647050:intron 20.0%
!!! ACTAAATGTTTTAGAAAGAA+TGG + chr4_3:53015106-53015125 None:intergenic 20.0%
!! AAAAATAATCTCAAAGGTAA+GGG + chr4_3:53015244-53015263 None:intergenic 20.0%
!! TAAAAATAATCTCAAAGGTA+AGG + chr4_3:53015245-53015264 None:intergenic 20.0%
!! ATGTCATATAATATGTATCA+CGG + chr4_3:53015522-53015541 None:intergenic 20.0%
!! AAAATACTAATAAACTAACG+AGG + chr4_3:53015565-53015584 None:intergenic 20.0%
!!! TTTATTAGTATTTTTTTGGG+TGG - chr4_3:53015571-53015590 Msa0647050:intron 20.0%
!!! TTTAGTTTTTTTTTCCTGAA+AGG - chr4_3:53015609-53015628 Msa0647050:intron 20.0%
!!! GTACTGTTTTTTTTTTTATG+AGG - chr4_3:53015787-53015806 Msa0647050:exon 20.0%
! TAGAAATCTGAATAAGAAGA+TGG + chr4_3:53010546-53010565 None:intergenic 25.0%
!!! ATTTTGAAACCCTATTTTTC+AGG - chr4_3:53010590-53010609 Msa0647050:three_prime_UTR 25.0%
! ATATGGATTTGGATATTGAA+GGG - chr4_3:53011005-53011024 Msa0647050:intron 25.0%
! CATCAAAACCATATCAAAAA+TGG + chr4_3:53011161-53011180 None:intergenic 25.0%
!!! TTTGTTTTGAAGATATTGAG+AGG - chr4_3:53011375-53011394 Msa0647050:intron 25.0%
!!! TGATTTTTGAGTTGATGATT+TGG - chr4_3:53011726-53011745 Msa0647050:CDS 25.0%
!!! TAGTTCTATATTTTGACTGT+TGG - chr4_3:53011754-53011773 Msa0647050:CDS 25.0%
! TGAATGATATTTGATGTTGA+AGG - chr4_3:53011795-53011814 Msa0647050:intron 25.0%
! GAATGATATTTGATGTTGAA+GGG - chr4_3:53011796-53011815 Msa0647050:intron 25.0%
!!! AAGCTTCTTTTAGCTTTTTT+CGG - chr4_3:53011834-53011853 Msa0647050:intron 25.0%
!! GTAAAAAATTACCCGATTTT+AGG + chr4_3:53012110-53012129 None:intergenic 25.0%
! TACAATCAATTTGATCTAGA+AGG - chr4_3:53012127-53012146 Msa0647050:intron 25.0%
! AATAATCATTTGAACTGTAC+TGG - chr4_3:53012202-53012221 Msa0647050:intron 25.0%
! ATAATCATTTGAACTGTACT+GGG - chr4_3:53012203-53012222 Msa0647050:intron 25.0%
! CAAAACACATTGTTCAAAAT+AGG + chr4_3:53012272-53012291 None:intergenic 25.0%
! ATATGTTAATTGCAGTTTCA+AGG + chr4_3:53012346-53012365 None:intergenic 25.0%
! AACATATCTTCTCTAATTTC+AGG - chr4_3:53012359-53012378 Msa0647050:CDS 25.0%
! TTACTGATAAACAAATTGTG+AGG - chr4_3:53012383-53012402 Msa0647050:CDS 25.0%
! ATATACAACAAAACACTCAT+GGG + chr4_3:53012575-53012594 None:intergenic 25.0%
! TTAAGTCATTGTTCAAAGTA+TGG - chr4_3:53012653-53012672 Msa0647050:CDS 25.0%
! TAAGTCATTGTTCAAAGTAT+GGG - chr4_3:53012654-53012673 Msa0647050:CDS 25.0%
! TCATCAAATAAAACTTCTTC+TGG + chr4_3:53012865-53012884 None:intergenic 25.0%
!!! TTTATTTTCTTGCAGCTTTT+TGG - chr4_3:53013146-53013165 Msa0647050:CDS 25.0%
!! TTATTTTCTTGCAGCTTTTT+GGG - chr4_3:53013147-53013166 Msa0647050:CDS 25.0%
! GATATAAATATTCTCCTTGT+TGG - chr4_3:53013212-53013231 Msa0647050:intron 25.0%
!!! ATTTTTTCTGCTAAATCTTC+AGG - chr4_3:53013437-53013456 Msa0647050:intron 25.0%
!! TTTTTCTACAAAACTTTGCA+TGG - chr4_3:53013608-53013627 Msa0647050:intron 25.0%
! ATGAAAACCCTAAAAAATAG+AGG + chr4_3:53013991-53014010 None:intergenic 25.0%
!!! ATTTGAGTTGATCTTTTTTC+TGG - chr4_3:53014147-53014166 Msa0647050:intron 25.0%
! TTACAGGCTATGTAAAAATA+AGG - chr4_3:53014472-53014491 Msa0647050:CDS 25.0%
! TACAGGCTATGTAAAAATAA+GGG - chr4_3:53014473-53014492 Msa0647050:CDS 25.0%
! GTCATATATAGTTTATTTGG+TGG + chr4_3:53014919-53014938 None:intergenic 25.0%
! ACTGGTAAAAATAATCTCAA+AGG + chr4_3:53015250-53015269 None:intergenic 25.0%
!! TAGAGAATTGATAGCTAAAA+TGG + chr4_3:53015488-53015507 None:intergenic 25.0%
!!! TTACTCTTTTTTACTGTTGT+TGG + chr4_3:53015679-53015698 None:intergenic 25.0%
! TGATGATTTGGATATGGATT+TGG - chr4_3:53010994-53011013 Msa0647050:intron 30.0%
GATATGGATTTGGATATTGA+AGG - chr4_3:53011004-53011023 Msa0647050:intron 30.0%
GTATGAGAAATTGATCAAAC+AGG - chr4_3:53011030-53011049 Msa0647050:intron 30.0%
GATCAAACAGGTTATTGAAT+TGG - chr4_3:53011042-53011061 Msa0647050:intron 30.0%
AAACAGGTTATTGAATTGGA+AGG - chr4_3:53011046-53011065 Msa0647050:intron 30.0%
TCACGAATTGTATAGTAAGA+TGG - chr4_3:53011111-53011130 Msa0647050:CDS 30.0%
AATTGTATAGTAAGATGGTG+AGG - chr4_3:53011116-53011135 Msa0647050:CDS 30.0%
!!! TGATATGGTTTTGATGAACA+TGG - chr4_3:53011165-53011184 Msa0647050:CDS 30.0%
! TTTTGATGAACATGGTTACT+AGG - chr4_3:53011173-53011192 Msa0647050:CDS 30.0%
! GAACATGCTTTTCAAACATA+GGG + chr4_3:53011204-53011223 None:intergenic 30.0%
! TGAACATGCTTTTCAAACAT+AGG + chr4_3:53011205-53011224 None:intergenic 30.0%
! TTGAAAAGCATGTTCAAACT+AGG - chr4_3:53011209-53011228 Msa0647050:intron 30.0%
TGATATGTGATGATTGTTTG+TGG - chr4_3:53011351-53011370 Msa0647050:intron 30.0%
!! TTTTGAAGATATTGAGAGGA+TGG - chr4_3:53011379-53011398 Msa0647050:intron 30.0%
! ATCTGAATGTAATGTTTTGC+TGG - chr4_3:53011568-53011587 Msa0647050:intron 30.0%
!! TGCTGGCTATTTTGAATTTT+AGG - chr4_3:53011585-53011604 Msa0647050:intron 30.0%
TAAAACATAGGCAAATAGCT+GGG - chr4_3:53011966-53011985 Msa0647050:intron 30.0%
TGGAATATAACTTTCTGAAC+TGG - chr4_3:53011991-53012010 Msa0647050:intron 30.0%
AAAAACTACTATTAACCTGC+TGG - chr4_3:53012039-53012058 Msa0647050:intron 30.0%
TAGTTGTGTTAATTCCAGTA+TGG - chr4_3:53012067-53012086 Msa0647050:intron 30.0%
ACATTATTGAATCACCATAC+TGG + chr4_3:53012084-53012103 None:intergenic 30.0%
CAATAATGTCTGCCTAAAAT+CGG - chr4_3:53012095-53012114 Msa0647050:intron 30.0%
AATAATGTCTGCCTAAAATC+GGG - chr4_3:53012096-53012115 Msa0647050:intron 30.0%
!! GGTAGATTTTAGTGATAAGT+TGG - chr4_3:53012224-53012243 Msa0647050:intron 30.0%
! TTTAGTGATAAGTTGGATGA+TGG - chr4_3:53012231-53012250 Msa0647050:intron 30.0%
!! GTTTTGATCATGTGACTATT+TGG - chr4_3:53012286-53012305 Msa0647050:CDS 30.0%
CTATTTATCAGAGTATGTCA+TGG + chr4_3:53012528-53012547 None:intergenic 30.0%
GATATACAACAAAACACTCA+TGG + chr4_3:53012576-53012595 None:intergenic 30.0%
!! TGAGTGTTTTGTTGTATATC+AGG - chr4_3:53012576-53012595 Msa0647050:intron 30.0%
AAATGCAAATGAGTTTGAGA+AGG + chr4_3:53012683-53012702 None:intergenic 30.0%
TAAAAAAGACATCAAAGTCC+CGG - chr4_3:53012791-53012810 Msa0647050:CDS 30.0%
AACAACCAGATATCTATGAA+AGG - chr4_3:53012994-53013013 Msa0647050:intron 30.0%
GTTGTTTGACAAATATTCTG+AGG - chr4_3:53013114-53013133 Msa0647050:CDS 30.0%
! TATTTTCTTGCAGCTTTTTG+GGG - chr4_3:53013148-53013167 Msa0647050:CDS 30.0%
CTAATGTACAAGAAATGCAA+TGG - chr4_3:53013408-53013427 Msa0647050:intron 30.0%
TGTAGAAAAAACAAGCAGAT+AGG + chr4_3:53013598-53013617 None:intergenic 30.0%
ATAAACAGAGACAAGTGTAT+TGG + chr4_3:53013696-53013715 None:intergenic 30.0%
ACAAACTGTTTCAATAGCAA+AGG - chr4_3:53013732-53013751 Msa0647050:CDS 30.0%
! AGCAATCCATTTTATACCTT+GGG - chr4_3:53013961-53013980 Msa0647050:intron 30.0%
ACAGGCTATGTAAAAATAAG+GGG - chr4_3:53014474-53014493 Msa0647050:CDS 30.0%
CTATGTAAAAATAAGGGGTA+GGG - chr4_3:53014479-53014498 Msa0647050:CDS 30.0%
TATGTAAAAATAAGGGGTAG+GGG - chr4_3:53014480-53014499 Msa0647050:CDS 30.0%
!! TATTAAGTAACTTGTTGCAC+AGG - chr4_3:53014778-53014797 Msa0647050:intron 30.0%
TGGAATACAATAGAGTATAG+GGG + chr4_3:53014899-53014918 None:intergenic 30.0%
GTGGAATACAATAGAGTATA+GGG + chr4_3:53014900-53014919 None:intergenic 30.0%
! CTAAATCCTTTTATCTTCAC+AGG - chr4_3:53014938-53014957 Msa0647050:CDS 30.0%
ATAGTTCCTGTGAAGATAAA+AGG + chr4_3:53014947-53014966 None:intergenic 30.0%
TAAAATGATCACGCAGATAT+TGG - chr4_3:53015166-53015185 Msa0647050:CDS 30.0%
CATTAGTTCACTTATCCTTA+GGG + chr4_3:53015290-53015309 None:intergenic 30.0%
TCATTAGTTCACTTATCCTT+AGG + chr4_3:53015291-53015310 None:intergenic 30.0%
TTTCATGTTTAATGCAGCTA+AGG - chr4_3:53015315-53015334 Msa0647050:CDS 30.0%
AAAAAGAACATGATACGATG+AGG - chr4_3:53015394-53015413 Msa0647050:CDS 30.0%
! GAATTGATAGCTAAAATGGT+TGG + chr4_3:53015484-53015503 None:intergenic 30.0%
TATAATATGTATCACGGCAA+GGG + chr4_3:53015516-53015535 None:intergenic 30.0%
ATATAATATGTATCACGGCA+AGG + chr4_3:53015517-53015536 None:intergenic 30.0%
GAAGAAGGACCTGAAAAATA+GGG + chr4_3:53010602-53010621 None:intergenic 35.0%
TGAAGAAGGACCTGAAAAAT+AGG + chr4_3:53010603-53010622 None:intergenic 35.0%
AGAGAAAAATCTGCTTCTCA+AGG - chr4_3:53010965-53010984 Msa0647050:intron 35.0%
! TGGTGATGATGATTTGGATA+TGG - chr4_3:53010988-53011007 Msa0647050:intron 35.0%
ATGAGGAATTTGAATCCTTC+TGG - chr4_3:53011259-53011278 Msa0647050:intron 35.0%
GAAAACAAAAACTCACCAGA+AGG + chr4_3:53011277-53011296 None:intergenic 35.0%
CCATGAAGGGAATGATTATT+CGG - chr4_3:53011405-53011424 Msa0647050:intron 35.0%
CTCGATTATACCAGAAATCA+GGG - chr4_3:53011433-53011452 Msa0647050:CDS 35.0%
AATATAGCTTCCCTGATTTC+TGG + chr4_3:53011446-53011465 None:intergenic 35.0%
AAATCAGGGAAGCTATATTC+AGG - chr4_3:53011447-53011466 Msa0647050:CDS 35.0%
ATATTCAGGTGTCTAGTATG+TGG - chr4_3:53011461-53011480 Msa0647050:CDS 35.0%
GTAATTACACGAGTCATTTC+TGG - chr4_3:53011516-53011535 Msa0647050:intron 35.0%
AACAAGTGTCATCGAATTCT+TGG + chr4_3:53011655-53011674 None:intergenic 35.0%
CTTCCTGCAAAGTAAAACAT+AGG - chr4_3:53011954-53011973 Msa0647050:CDS 35.0%
! TTGCCTATGTTTTACTTTGC+AGG + chr4_3:53011960-53011979 None:intergenic 35.0%
GTAAAACATAGGCAAATAGC+TGG - chr4_3:53011965-53011984 Msa0647050:intron 35.0%
TCAATTTGATCTAGAAGGTG+AGG - chr4_3:53012132-53012151 Msa0647050:intron 35.0%
TCTTAACCTCTTGACAAATG+AGG + chr4_3:53012165-53012184 None:intergenic 35.0%
AAAATAGGAGCTAATGACCA+TGG + chr4_3:53012257-53012276 None:intergenic 35.0%
TAAACAAATTGTGAGGCTTC+AGG - chr4_3:53012390-53012409 Msa0647050:CDS 35.0%
! TTTGTTGTATATCAGGTGAC+TGG - chr4_3:53012583-53012602 Msa0647050:intron 35.0%
GAGCTAGATGATGTAAAGAA+AGG - chr4_3:53013047-53013066 Msa0647050:intron 35.0%
! ATTTTCTTGCAGCTTTTTGG+GGG - chr4_3:53013149-53013168 Msa0647050:CDS 35.0%
ACACTAAAAGATCATGGACT+TGG + chr4_3:53013384-53013403 None:intergenic 35.0%
AGACAGACACTAAAAGATCA+TGG + chr4_3:53013390-53013409 None:intergenic 35.0%
ACAAAATGTCTGACAATGCA+AGG - chr4_3:53013520-53013539 Msa0647050:CDS 35.0%
! TCAGAAGTACAAAGCTAACA+TGG + chr4_3:53013669-53013688 None:intergenic 35.0%
TGATAACTAGGTTATGACTC+TGG - chr4_3:53013904-53013923 Msa0647050:intron 35.0%
ATATGCAATTCCTCATGCAT+TGG - chr4_3:53013937-53013956 Msa0647050:intron 35.0%
! CAGCAATCCATTTTATACCT+TGG - chr4_3:53013960-53013979 Msa0647050:intron 35.0%
AAAAAATAGAGGTAAGCCCA+AGG + chr4_3:53013980-53013999 None:intergenic 35.0%
!!! TGGGCTTACCTCTATTTTTT+AGG - chr4_3:53013980-53013999 Msa0647050:intron 35.0%
!!! GGGCTTACCTCTATTTTTTA+GGG - chr4_3:53013981-53014000 Msa0647050:intron 35.0%
TCTCTTTATCAAACCTAGTG+TGG - chr4_3:53014045-53014064 Msa0647050:intron 35.0%
CTCTTTATCAAACCTAGTGT+GGG - chr4_3:53014046-53014065 Msa0647050:intron 35.0%
TATTGTTTCCCTGCACTATA+AGG - chr4_3:53014239-53014258 Msa0647050:intron 35.0%
CTCATAATCCTTATAGTGCA+GGG + chr4_3:53014250-53014269 None:intergenic 35.0%
ACTATAAGGATTATGAGGTC+TGG - chr4_3:53014253-53014272 Msa0647050:intron 35.0%
CATGCAAAAACACTTAAGCT+TGG + chr4_3:53014315-53014334 None:intergenic 35.0%
GCTATGTAAAAATAAGGGGT+AGG - chr4_3:53014478-53014497 Msa0647050:CDS 35.0%
!! TATCACCTTTTTGCTACTTC+CGG + chr4_3:53014514-53014533 None:intergenic 35.0%
ATTACGACTTAGTGAAGCAT+TGG - chr4_3:53014674-53014693 Msa0647050:CDS 35.0%
! ACAGGTTGAAAAACATGATG+TGG - chr4_3:53014796-53014815 Msa0647050:intron 35.0%
GGAATACAATAGAGTATAGG+GGG + chr4_3:53014898-53014917 None:intergenic 35.0%
GGTGGAATACAATAGAGTAT+AGG + chr4_3:53014901-53014920 None:intergenic 35.0%
TCTCATAACTACTGGTGTTT+CGG - chr4_3:53014976-53014995 Msa0647050:CDS 35.0%
ATCATGGAGAAGATGCAAAT+TGG - chr4_3:53015049-53015068 Msa0647050:CDS 35.0%
TCATGGAGAAGATGCAAATT+GGG - chr4_3:53015050-53015069 Msa0647050:CDS 35.0%
TTAGCTATCAATTCTCTACC+CGG - chr4_3:53015490-53015509 Msa0647050:CDS 35.0%
ATGTAACTGCGAAATATGGC+GGG + chr4_3:53010387-53010406 None:intergenic 40.0%
GATGTAACTGCGAAATATGG+CGG + chr4_3:53010388-53010407 None:intergenic 40.0%
GGAGATGTAACTGCGAAATA+TGG + chr4_3:53010391-53010410 None:intergenic 40.0%
TGAGAAATGAGAAGTGAGTG+AGG + chr4_3:53010428-53010447 None:intergenic 40.0%
ATTGTTGGAATCCATTGGAG+TGG + chr4_3:53010499-53010518 None:intergenic 40.0%
! ACTCCAATGGATTCCAACAA+TGG - chr4_3:53010498-53010517 Msa0647050:three_prime_UTR 40.0%
GAACCATTGTTGGAATCCAT+TGG + chr4_3:53010504-53010523 None:intergenic 40.0%
GAAGTGATACGAACCATTGT+TGG + chr4_3:53010514-53010533 None:intergenic 40.0%
!!! TTTTTCAGGTCCTTCTTCAC+CGG - chr4_3:53010604-53010623 Msa0647050:three_prime_UTR 40.0%
GGACTTGAATTGGAATTGTC+CGG + chr4_3:53010626-53010645 None:intergenic 40.0%
GTTGGCAATTGGACTTGAAT+TGG + chr4_3:53010636-53010655 None:intergenic 40.0%
GGAAGACATAGGAAAGTCTT+CGG + chr4_3:53010834-53010853 None:intergenic 40.0%
ATGTGAATGATGCGATTCAG+AGG - chr4_3:53010927-53010946 Msa0647050:CDS 40.0%
GAAAAATCTGCTTCTCAAGG+TGG - chr4_3:53010968-53010987 Msa0647050:intron 40.0%
! TCAAGGTGGTGATGATGATT+TGG - chr4_3:53010982-53011001 Msa0647050:intron 40.0%
!!! GGTGCTTGCCATTTTTGATA+TGG - chr4_3:53011150-53011169 Msa0647050:CDS 40.0%
! TTAAGAGCGCAACTTCAATG+AGG - chr4_3:53011242-53011261 Msa0647050:intron 40.0%
CCGAATAATCATTCCCTTCA+TGG + chr4_3:53011408-53011427 None:intergenic 40.0%
GCTCGATTATACCAGAAATC+AGG - chr4_3:53011432-53011451 Msa0647050:intron 40.0%
TGAACCTACTGTTTGCTTGA+GGG - chr4_3:53011617-53011636 Msa0647050:intron 40.0%
AGCAAAAAGCAGAAGGAACA+GGG + chr4_3:53011904-53011923 None:intergenic 40.0%
AAGCAAAAAGCAGAAGGAAC+AGG + chr4_3:53011905-53011924 None:intergenic 40.0%
TTTGCTTGTGAGCAAATCAG+TGG - chr4_3:53011918-53011937 Msa0647050:CDS 40.0%
ACTTTGCCTCATTTGTCAAG+AGG - chr4_3:53012156-53012175 Msa0647050:intron 40.0%
TCATGTGACTATTTGGCGTA+AGG - chr4_3:53012293-53012312 Msa0647050:CDS 40.0%
! TTGGCGTAAGGTTTTTCACT+TGG - chr4_3:53012305-53012324 Msa0647050:CDS 40.0%
AATAGCAAGCTAACAGTGTG+AGG + chr4_3:53012448-53012467 None:intergenic 40.0%
!! CTTGCTATTGCATGACAAAC+TGG - chr4_3:53012459-53012478 Msa0647050:intron 40.0%
ATCAGGTGACTGGTATATAC+AGG - chr4_3:53012593-53012612 Msa0647050:intron 40.0%
TCAGGTGACTGGTATATACA+GGG - chr4_3:53012594-53012613 Msa0647050:intron 40.0%
GACTTAACAGTTCTCTGAGT+TGG + chr4_3:53012640-53012659 None:intergenic 40.0%
TCAGACAAGCATCAATTAGC+AGG + chr4_3:53012942-53012961 None:intergenic 40.0%
GTCAGCCTTTCATAGATATC+TGG + chr4_3:53013002-53013021 None:intergenic 40.0%
AAAGAAAGGTCTTCTTTGCC+AGG - chr4_3:53013061-53013080 Msa0647050:intron 40.0%
AGCTAGAAAGATGTGTTACC+TGG + chr4_3:53013082-53013101 None:intergenic 40.0%
!! AATGCTTTGAAGTTGGCATC+TGG - chr4_3:53013173-53013192 Msa0647050:intron 40.0%
ATACACAAACTTTCTCCACG+TGG - chr4_3:53013272-53013291 Msa0647050:CDS 40.0%
TATACAGTTTCGCCTGTTTC+AGG + chr4_3:53013359-53013378 None:intergenic 40.0%
! AATCTTCAGGTTCTTGAGAG+TGG - chr4_3:53013450-53013469 Msa0647050:intron 40.0%
CATCAATGCAACAGATACCT+CGG + chr4_3:53013494-53013513 None:intergenic 40.0%
CACTTGTCTCTGTTTATTCC+AGG - chr4_3:53013699-53013718 Msa0647050:CDS 40.0%
TCTCTGTTTATTCCAGGTGA+TGG - chr4_3:53013705-53013724 Msa0647050:CDS 40.0%
ACTGTTTCAATAGCAAAGGC+AGG - chr4_3:53013736-53013755 Msa0647050:CDS 40.0%
TTATTGCTTCCCTCAATGCA+AGG - chr4_3:53013761-53013780 Msa0647050:intron 40.0%
GATTATATCGTGAACCGCTA+GGG + chr4_3:53013810-53013829 None:intergenic 40.0%
TGTTGTCAATGACAGACAAG+CGG + chr4_3:53013834-53013853 None:intergenic 40.0%
ACTAACCTGGACAAAAGAGT+GGG + chr4_3:53013868-53013887 None:intergenic 40.0%
AACTAACCTGGACAAAAGAG+TGG + chr4_3:53013869-53013888 None:intergenic 40.0%
!! CTTTTGTCCAGGTTAGTTGT+TGG - chr4_3:53013871-53013890 Msa0647050:intron 40.0%
CTTATGTCCAACAACTAACC+TGG + chr4_3:53013881-53013900 None:intergenic 40.0%
GGACATAAGTCGTGATAACT+AGG - chr4_3:53013892-53013911 Msa0647050:intron 40.0%
GGTAAGCCCAAGGTATAAAA+TGG + chr4_3:53013970-53013989 None:intergenic 40.0%
TTATCAAACCTAGTGTGGGT+AGG - chr4_3:53014050-53014069 Msa0647050:intron 40.0%
TATCAAACCTAGTGTGGGTA+GGG - chr4_3:53014051-53014070 Msa0647050:intron 40.0%
!!! GAGTTGATCTTTTTTCTGGC+AGG - chr4_3:53014151-53014170 Msa0647050:intron 40.0%
CAATATGTTTGGCAAGTCGT+CGG + chr4_3:53014224-53014243 None:intergenic 40.0%
GTGCAGGGAAACAATATGTT+TGG + chr4_3:53014235-53014254 None:intergenic 40.0%
CCTCATAATCCTTATAGTGC+AGG + chr4_3:53014251-53014270 None:intergenic 40.0%
CCTGCACTATAAGGATTATG+AGG - chr4_3:53014248-53014267 Msa0647050:intron 40.0%
CAGCTTCATCTGATAGTTGT+GGG + chr4_3:53014440-53014459 None:intergenic 40.0%
GCTGCTGATGAATTGATTAC+AGG - chr4_3:53014456-53014475 Msa0647050:intron 40.0%
ATTCTCCGGAAGTAGCAAAA+AGG - chr4_3:53014506-53014525 Msa0647050:CDS 40.0%
AATAGACTCTCAATCTGCCT+TGG + chr4_3:53014657-53014676 None:intergenic 40.0%
!! ATCGGTTAGTTTAGCTTGCT+TGG - chr4_3:53014716-53014735 Msa0647050:CDS 40.0%
GGTTGAAAAACATGATGTGG+TGG - chr4_3:53014799-53014818 Msa0647050:intron 40.0%
TGAAAAACATGATGTGGTGG+AGG - chr4_3:53014802-53014821 Msa0647050:intron 40.0%
GTTTGGATAACTACCAGTTC+TGG + chr4_3:53014873-53014892 None:intergenic 40.0%
ATAGAGTATAGGGGGTTGTT+TGG + chr4_3:53014890-53014909 None:intergenic 40.0%
CTTCACAGGAACTATTGACA+TGG - chr4_3:53014952-53014971 Msa0647050:CDS 40.0%
GACATGGATCTCATAACTAC+TGG - chr4_3:53014968-53014987 Msa0647050:CDS 40.0%
CATGGAGAAGATGCAAATTG+GGG - chr4_3:53015051-53015070 Msa0647050:CDS 40.0%
ATGGAGAAGATGCAAATTGG+GGG - chr4_3:53015052-53015071 Msa0647050:CDS 40.0%
TAATACCTCCAATAACCGCA+TGG + chr4_3:53015083-53015102 None:intergenic 40.0%
TAAGATGAATTTCGCTGCCA+GGG + chr4_3:53015211-53015230 None:intergenic 40.0%
TTAAGATGAATTTCGCTGCC+AGG + chr4_3:53015212-53015231 None:intergenic 40.0%
GATGTAGCAAGCATAAACAC+TGG + chr4_3:53015268-53015287 None:intergenic 40.0%
! TTATGCTTGCTACATCCCTA+AGG - chr4_3:53015272-53015291 Msa0647050:CDS 40.0%
AGCAATGTGAGAAGCTACAA+TGG + chr4_3:53015648-53015667 None:intergenic 40.0%
! TTTTCCCGCCAGAACATTCT+GGG + chr4_3:53010351-53010370 None:intergenic 45.0%
TGTAACTGCGAAATATGGCG+GGG + chr4_3:53010386-53010405 None:intergenic 45.0%
AGTGAGGAGAAGAGTGAGAA+TGG + chr4_3:53010412-53010431 None:intergenic 45.0%
GATTTGTGAAAACGCGGGAA+TGG + chr4_3:53010462-53010481 None:intergenic 45.0%
CCATGGATTTGTGAAAACGC+GGG + chr4_3:53010467-53010486 None:intergenic 45.0%
GCCATGGATTTGTGAAAACG+CGG + chr4_3:53010468-53010487 None:intergenic 45.0%
GGAATCCATTGGAGTGGAAT+CGG + chr4_3:53010493-53010512 None:intergenic 45.0%
TTGGAATTGTCCGGTGAAGA+AGG + chr4_3:53010617-53010636 None:intergenic 45.0%
!! GAAGAGTAGGTGTTGGCAAT+TGG + chr4_3:53010647-53010666 None:intergenic 45.0%
ATGGAGTAATTGACTGACGG+CGG + chr4_3:53010685-53010704 None:intergenic 45.0%
CGGATGGAGTAATTGACTGA+CGG + chr4_3:53010688-53010707 None:intergenic 45.0%
CGTCAGTCAATTACTCCATC+CGG - chr4_3:53010686-53010705 Msa0647050:three_prime_UTR 45.0%
AGACATAGGAAAGTCTTCGG+AGG + chr4_3:53010831-53010850 None:intergenic 45.0%
GACTTTCCTATGTCTTCCGA+AGG - chr4_3:53010836-53010855 Msa0647050:intron 45.0%
TTTCCTATGTCTTCCGAAGG+CGG - chr4_3:53010839-53010858 Msa0647050:intron 45.0%
TTAGTCCCCCAAACGTAAGT+AGG + chr4_3:53010893-53010912 None:intergenic 45.0%
TGAGAGGATGGTATCCATGA+AGG - chr4_3:53011391-53011410 Msa0647050:intron 45.0%
GAGAGGATGGTATCCATGAA+GGG - chr4_3:53011392-53011411 Msa0647050:intron 45.0%
GTGTAATTACCTCTCTCCAC+CGG + chr4_3:53011506-53011525 None:intergenic 45.0%
CTGAACCTACTGTTTGCTTG+AGG - chr4_3:53011616-53011635 Msa0647050:intron 45.0%
TCTTCCCTCAAGCAAACAGT+AGG + chr4_3:53011624-53011643 None:intergenic 45.0%
AACCGATGCAAGTAAGTCTG+TGG - chr4_3:53011678-53011697 Msa0647050:CDS 45.0%
AGCCACAGACTTACTTGCAT+CGG + chr4_3:53011683-53011702 None:intergenic 45.0%
GCTCACAAGCAAAAAGCAGA+AGG + chr4_3:53011911-53011930 None:intergenic 45.0%
AACACAACTAAACTGCCAGC+AGG + chr4_3:53012057-53012076 None:intergenic 45.0%
! GATAAGTTGGATGATGGCCA+TGG - chr4_3:53012237-53012256 Msa0647050:intron 45.0%
GCTATTGCATGACAAACTGG+TGG - chr4_3:53012462-53012481 Msa0647050:intron 45.0%
! CATGACAAACTGGTGGATAC+TGG - chr4_3:53012469-53012488 Msa0647050:intron 45.0%
TATACAGGGCTATGAGTGTC+AGG - chr4_3:53012608-53012627 Msa0647050:CDS 45.0%
ATACAGGGCTATGAGTGTCA+GGG - chr4_3:53012609-53012628 Msa0647050:CDS 45.0%
GATGCTATGGAGGTTGACAA+TGG - chr4_3:53012826-53012845 Msa0647050:CDS 45.0%
TTGATGCTTGTCTGAGTCTC+AGG - chr4_3:53012947-53012966 Msa0647050:CDS 45.0%
TGAAAGGCTGACAAAGTCAC+TGG - chr4_3:53013010-53013029 Msa0647050:intron 45.0%
! TCATCTAGCTCCCAGATGTT+TGG + chr4_3:53013038-53013057 None:intergenic 45.0%
!! ATTCTCCTTGTTGGTGATCC+TGG - chr4_3:53013221-53013240 Msa0647050:intron 45.0%
TTGTACCAGGATCACCAACA+AGG + chr4_3:53013229-53013248 None:intergenic 45.0%
TGGCATTTACACCAGTGGAA+GGG - chr4_3:53013292-53013311 Msa0647050:CDS 45.0%
TTCGCCTGTTTCAGGATCTT+TGG + chr4_3:53013351-53013370 None:intergenic 45.0%
!! CAGTTTGTTGTTCCATCACC+TGG + chr4_3:53013720-53013739 None:intergenic 45.0%
TTCCCTCAATGCAAGGACTT+CGG - chr4_3:53013768-53013787 Msa0647050:intron 45.0%
GGATTATATCGTGAACCGCT+AGG + chr4_3:53013811-53013830 None:intergenic 45.0%
TTGTCAATGACAGACAAGCG+GGG + chr4_3:53013832-53013851 None:intergenic 45.0%
GTTGTCAATGACAGACAAGC+GGG + chr4_3:53013833-53013852 None:intergenic 45.0%
ATCAAACCTAGTGTGGGTAG+GGG - chr4_3:53014052-53014071 Msa0647050:intron 45.0%
GTGACCATAATCGCAGAACA+TGG - chr4_3:53014350-53014369 Msa0647050:intron 45.0%
TGCTCCATGTTCTGCGATTA+TGG + chr4_3:53014357-53014376 None:intergenic 45.0%
ATAATCGCAGAACATGGAGC+AGG - chr4_3:53014356-53014375 Msa0647050:intron 45.0%
TTGTGGGTGTATGTGCTTTC+GGG + chr4_3:53014424-53014443 None:intergenic 45.0%
GTTGTGGGTGTATGTGCTTT+CGG + chr4_3:53014425-53014444 None:intergenic 45.0%
GCAGCTTCATCTGATAGTTG+TGG + chr4_3:53014441-53014460 None:intergenic 45.0%
AGGTAATAACGGCAACTCCA+AGG - chr4_3:53014637-53014656 Msa0647050:CDS 45.0%
!! GACTTAGTGAAGCATTGGCT+CGG - chr4_3:53014679-53014698 Msa0647050:CDS 45.0%
TCGGATTCGCTTCTCAGAAT+CGG - chr4_3:53014698-53014717 Msa0647050:CDS 45.0%
!! ATGATGTGGTGGAGGCATTT+CGG - chr4_3:53014810-53014829 Msa0647050:intron 45.0%
TGCAATGCAGCAATCTGCAA+TGG - chr4_3:53014844-53014863 Msa0647050:intron 45.0%
TCTGCAATGGATACCAGAAC+TGG - chr4_3:53014857-53014876 Msa0647050:intron 45.0%
AGACACTCGCAACATGATCA+TGG - chr4_3:53015033-53015052 Msa0647050:CDS 45.0%
GAACTAAAGAATCAGAGCCC+TGG - chr4_3:53015191-53015210 Msa0647050:CDS 45.0%
CATGGAAACAAATCCTTCGC+TGG + chr4_3:53015360-53015379 None:intergenic 45.0%
! CAGCGAAGGATTTGTTTCCA+TGG - chr4_3:53015358-53015377 Msa0647050:CDS 45.0%
! GAAGGATTTGTTTCCATGGC+TGG - chr4_3:53015362-53015381 Msa0647050:CDS 45.0%
! TTTTACACTGTCACCAGCCA+TGG + chr4_3:53015378-53015397 None:intergenic 45.0%
AGAACATGATACGATGAGGC+AGG - chr4_3:53015398-53015417 Msa0647050:CDS 45.0%
GAACATGATACGATGAGGCA+GGG - chr4_3:53015399-53015418 Msa0647050:CDS 45.0%
!!! CAGGGCCATCATTGGTTTTA+GGG - chr4_3:53015417-53015436 Msa0647050:CDS 45.0%
!!! AGGGCCATCATTGGTTTTAG+GGG - chr4_3:53015418-53015437 Msa0647050:CDS 45.0%
CAGTCCCCTAAAACCAATGA+TGG + chr4_3:53015425-53015444 None:intergenic 45.0%
! GTTTTCCCGCCAGAACATTC+TGG + chr4_3:53010352-53010371 None:intergenic 50.0%
! CCCGCGTTTTCACAAATCCA+TGG - chr4_3:53010464-53010483 Msa0647050:three_prime_UTR 50.0%
TCTGTTCGGTTGAGGAGTTC+CGG + chr4_3:53010708-53010727 None:intergenic 50.0%
AAGCGAGATCTGTTCGGTTG+AGG + chr4_3:53010716-53010735 None:intergenic 50.0%
GAAGCGAAGCGAGATCTGTT+CGG + chr4_3:53010722-53010741 None:intergenic 50.0%
AAGTCTTCGGAGGTGGAAGT+TGG + chr4_3:53010821-53010840 None:intergenic 50.0%
CATAGGAAAGTCTTCGGAGG+TGG + chr4_3:53010828-53010847 None:intergenic 50.0%
ACGCTGGTCCTACTTACGTT+TGG - chr4_3:53010882-53010901 Msa0647050:intron 50.0%
CGCTGGTCCTACTTACGTTT+GGG - chr4_3:53010883-53010902 Msa0647050:intron 50.0%
GCTGGTCCTACTTACGTTTG+GGG - chr4_3:53010884-53010903 Msa0647050:intron 50.0%
CTGGTCCTACTTACGTTTGG+GGG - chr4_3:53010885-53010904 Msa0647050:intron 50.0%
TTGGGGGACTAACATTAGCG+TGG - chr4_3:53010901-53010920 Msa0647050:intron 50.0%
AAAATGGCAAGCACCTCGAG+AGG + chr4_3:53011145-53011164 None:intergenic 50.0%
ATGTGGATTCTGCTCTGACC+CGG - chr4_3:53011478-53011497 Msa0647050:CDS 50.0%
ACACCTGACGAGATACCTGA+AGG - chr4_3:53012415-53012434 Msa0647050:intron 50.0%
AAAGCCAGGTGACAGAGTTG+AGG - chr4_3:53012492-53012511 Msa0647050:intron 50.0%
TAGCATCCTCAACCAGCATC+CGG + chr4_3:53012813-53012832 None:intergenic 50.0%
! GATGCTGGTTGAGGATGCTA+TGG - chr4_3:53012813-53012832 Msa0647050:CDS 50.0%
TATGGAGGTTGACAATGGCC+AGG - chr4_3:53012831-53012850 Msa0647050:CDS 50.0%
ATGGAGGTTGACAATGGCCA+GGG - chr4_3:53012832-53012851 Msa0647050:CDS 50.0%
CTTCTTCTGGATTTCTGCCC+TGG + chr4_3:53012852-53012871 None:intergenic 50.0%
ATGCTTGTCTGAGTCTCAGG+TGG - chr4_3:53012950-53012969 Msa0647050:CDS 50.0%
GTCTCAGGTGGCTAAACTGA+AGG - chr4_3:53012962-53012981 Msa0647050:CDS 50.0%
!! TGGGGGCAATGCTTTGAAGT+TGG - chr4_3:53013166-53013185 Msa0647050:intron 50.0%
GTGGCATTTACACCAGTGGA+AGG - chr4_3:53013291-53013310 Msa0647050:CDS 50.0%
GGCATTTACACCAGTGGAAG+GGG - chr4_3:53013293-53013312 Msa0647050:CDS 50.0%
GCATTTACACCAGTGGAAGG+GGG - chr4_3:53013294-53013313 Msa0647050:CDS 50.0%
GGTTGGATTGACTGCTTACG+TGG - chr4_3:53013325-53013344 Msa0647050:CDS 50.0%
GTGGCCAAAGATCCTGAAAC+AGG - chr4_3:53013344-53013363 Msa0647050:CDS 50.0%
ACCTCGGTCGCTCAAAACTA+GGG + chr4_3:53013478-53013497 None:intergenic 50.0%
TACCTCGGTCGCTCAAAACT+AGG + chr4_3:53013479-53013498 None:intergenic 50.0%
! TGCAAGGAGCATGTTACACG+AGG - chr4_3:53013536-53013555 Msa0647050:intron 50.0%
! AGGAGCATGTTACACGAGGT+TGG - chr4_3:53013540-53013559 Msa0647050:intron 50.0%
CACCGAAGTCCTTGCATTGA+GGG + chr4_3:53013773-53013792 None:intergenic 50.0%
ACACCGAAGTCCTTGCATTG+AGG + chr4_3:53013774-53013793 None:intergenic 50.0%
! CAATGCAAGGACTTCGGTGT+TGG - chr4_3:53013774-53013793 Msa0647050:intron 50.0%
TGGACAAAAGAGTGGGAGGA+AGG + chr4_3:53013861-53013880 None:intergenic 50.0%
! TTCCTCCCACTCTTTTGTCC+AGG - chr4_3:53013860-53013879 Msa0647050:intron 50.0%
AACCTGGACAAAAGAGTGGG+AGG + chr4_3:53013865-53013884 None:intergenic 50.0%
TGGATTGCTGCCAATGCATG+AGG + chr4_3:53013950-53013969 None:intergenic 50.0%
ATGTTTGGCAAGTCGTCGGT+CGG + chr4_3:53014220-53014239 None:intergenic 50.0%
GAACATGGAGCAGGATGTGT+TGG - chr4_3:53014365-53014384 Msa0647050:intron 50.0%
AGGGGTAGGGGAAAATTCTC+CGG - chr4_3:53014492-53014511 Msa0647050:CDS 50.0%
TTTCGGCAAGCGAAAGGATG+AGG - chr4_3:53014993-53015012 Msa0647050:CDS 50.0%
AAATTGGGGGACGTTCCATG+CGG - chr4_3:53015065-53015084 Msa0647050:CDS 50.0%
ACGTTCCATGCGGTTATTGG+AGG - chr4_3:53015075-53015094 Msa0647050:CDS 50.0%
!!! GCAGGGCCATCATTGGTTTT+AGG - chr4_3:53015416-53015435 Msa0647050:CDS 50.0%
ATATGTATCACGGCAAGGGC+CGG + chr4_3:53015512-53015531 None:intergenic 50.0%
GCAGACAAAGACAGCCTTTC+AGG + chr4_3:53015626-53015645 None:intergenic 50.0%
CTCAGCCCAGAATGTTCTGG+CGG - chr4_3:53010343-53010362 Msa0647050:three_prime_UTR 55.0%
TCAGCCCAGAATGTTCTGGC+GGG - chr4_3:53010344-53010363 Msa0647050:three_prime_UTR 55.0%
TGGAGTGGAATCGGAAGCCA+TGG + chr4_3:53010484-53010503 None:intergenic 55.0%
GGCTTCCGATTCCACTCCAA+TGG - chr4_3:53010485-53010504 Msa0647050:three_prime_UTR 55.0%
TAATTGACTGACGGCGGCGA+CGG + chr4_3:53010679-53010698 None:intergenic 55.0%
TTCGGTTGAGGAGTTCCGGA+TGG + chr4_3:53010704-53010723 None:intergenic 55.0%
GGAGGGAGTTGGAGTTGCAT+CGG + chr4_3:53010747-53010766 None:intergenic 55.0%
!! TTCGGAGGTGGAAGTTGGTG+TGG + chr4_3:53010816-53010835 None:intergenic 55.0%
TCACCGCCTTCGGAAGACAT+AGG + chr4_3:53010845-53010864 None:intergenic 55.0%
ATGTCTTCCGAAGGCGGTGA+CGG - chr4_3:53010845-53010864 Msa0647050:intron 55.0%
GGTTACGACATGGATGACGC+TGG - chr4_3:53010866-53010885 Msa0647050:intron 55.0%
GGGGACTAACATTAGCGTGG+AGG - chr4_3:53010904-53010923 Msa0647050:intron 55.0%
! GATGGTGAGGTATCCTCTCG+AGG - chr4_3:53011129-53011148 Msa0647050:CDS 55.0%
ATTCTGCTCTGACCCGGTTC+CGG - chr4_3:53011484-53011503 Msa0647050:CDS 55.0%
TTACCTCTCTCCACCGGAAC+CGG + chr4_3:53011500-53011519 None:intergenic 55.0%
CATAGGCAAATAGCTGGGCG+TGG - chr4_3:53011971-53011990 Msa0647050:intron 55.0%
CCTCCTTCAGGTATCTCGTC+AGG + chr4_3:53012421-53012440 None:intergenic 55.0%
CCTGACGAGATACCTGAAGG+AGG - chr4_3:53012418-53012437 Msa0647050:intron 55.0%
! CTGGTGGATACTGGAAAGCC+AGG - chr4_3:53012478-53012497 Msa0647050:intron 55.0%
CTCACCTCAACTCTGTCACC+TGG + chr4_3:53012499-53012518 None:intergenic 55.0%
AGGGCTATGAGTGTCAGGGT+AGG - chr4_3:53012613-53012632 Msa0647050:CDS 55.0%
GACATCAAAGTCCCGGATGC+TGG - chr4_3:53012798-53012817 Msa0647050:CDS 55.0%
! AAAGTCCCGGATGCTGGTTG+AGG - chr4_3:53012804-53012823 Msa0647050:CDS 55.0%
AGCATCCTCAACCAGCATCC+GGG + chr4_3:53012812-53012831 None:intergenic 55.0%
GCTGGTTGAGGATGCTATGG+AGG - chr4_3:53012816-53012835 Msa0647050:CDS 55.0%
AGTCACTGGCGCCAAACATC+TGG - chr4_3:53013024-53013043 Msa0647050:intron 55.0%
GTCACTGGCGCCAAACATCT+GGG - chr4_3:53013025-53013044 Msa0647050:intron 55.0%
! AGCTGCGACTTGCTTGTACC+AGG + chr4_3:53013242-53013261 None:intergenic 55.0%
CCACTGGTGTAAATGCCACG+TGG + chr4_3:53013290-53013309 None:intergenic 55.0%
CCACGTGGCATTTACACCAG+TGG - chr4_3:53013287-53013306 Msa0647050:CDS 55.0%
!! TTGGCTTGCGCAAACCCTAG+CGG - chr4_3:53013793-53013812 Msa0647050:intron 55.0%
AACCTAGTGTGGGTAGGGGT+TGG - chr4_3:53014056-53014075 Msa0647050:intron 55.0%
CTGGTGTTTCGGCAAGCGAA+AGG - chr4_3:53014987-53015006 Msa0647050:CDS 55.0%
GGGACGTTCCATGCGGTTAT+TGG - chr4_3:53015072-53015091 Msa0647050:CDS 55.0%
TATGTATCACGGCAAGGGCC+GGG + chr4_3:53015511-53015530 None:intergenic 55.0%
GCCAACACCTACTCTTCCCC+CGG - chr4_3:53010650-53010669 Msa0647050:three_prime_UTR 60.0%
GGGAGTTGGAGTTGCATCGG+AGG + chr4_3:53010744-53010763 None:intergenic 60.0%
!! AAGTTGGTGTGGCGGGGACA+CGG + chr4_3:53010805-53010824 None:intergenic 60.0%
!! AGGTGGAAGTTGGTGTGGCG+GGG + chr4_3:53010811-53010830 None:intergenic 60.0%
!! GAGGTGGAAGTTGGTGTGGC+GGG + chr4_3:53010812-53010831 None:intergenic 60.0%
!! GGAGGTGGAAGTTGGTGTGG+CGG + chr4_3:53010813-53010832 None:intergenic 60.0%
GTCGTAACCGTCACCGCCTT+CGG + chr4_3:53010855-53010874 None:intergenic 60.0%
! AGGCGGTGACGGTTACGACA+TGG - chr4_3:53010856-53010875 Msa0647050:intron 60.0%
TACCTCTCTCCACCGGAACC+GGG + chr4_3:53011499-53011518 None:intergenic 60.0%
! GTGTGAGGCGTTCCTCCTTC+AGG + chr4_3:53012433-53012452 None:intergenic 60.0%
!! GCATCTGGCGCTAGCTTTCG+TGG - chr4_3:53013188-53013207 Msa0647050:intron 60.0%
!!! GCCCTAGTTTTGAGCGACCG+AGG - chr4_3:53013474-53013493 Msa0647050:intron 60.0%
TGCCAACCCCTACCCACACT+AGG + chr4_3:53014061-53014080 None:intergenic 60.0%
!! GGTGGAGGCATTTCGGCTTC+TGG - chr4_3:53014817-53014836 Msa0647050:intron 60.0%
GTTGCTACTCTCGCCAGCGA+AGG - chr4_3:53015344-53015363 Msa0647050:CDS 60.0%
CGATGAGGCAGGGCCATCAT+TGG - chr4_3:53015409-53015428 Msa0647050:CDS 60.0%
GCCGGGGGAAGAGTAGGTGT+TGG + chr4_3:53010654-53010673 None:intergenic 65.0%
CAGTGGAAGGGGGAGCTCAG+CGG - chr4_3:53013304-53013323 Msa0647050:CDS 65.0%
TTGACTGACGGCGGCGACGG+CGG + chr4_3:53010676-53010695 None:intergenic 70.0%
!! CGACGGTGACGGGAGGGAGT+TGG + chr4_3:53010758-53010777 None:intergenic 70.0%
ACTCCCTCCCGTCACCGTCG+CGG - chr4_3:53010758-53010777 Msa0647050:CDS 70.0%
AAGGGATGCCGCCACCGCGA+CGG + chr4_3:53010775-53010794 None:intergenic 70.0%
! TTGGTGTGGCGGGGACACGG+CGG + chr4_3:53010802-53010821 None:intergenic 70.0%
CTGCTCTGACCCGGTTCCGG+TGG - chr4_3:53011487-53011506 Msa0647050:CDS 70.0%
GACCCGGTTCCGGTGGAGAG+AGG - chr4_3:53011494-53011513 Msa0647050:CDS 70.0%
CGCTGAGCTCCCCCTTCCAC+TGG + chr4_3:53013306-53013325 None:intergenic 70.0%
GGAAGGGGGAGCTCAGCGGT+TGG - chr4_3:53013308-53013327 Msa0647050:CDS 70.0%
ACGGCGGCCGGGGGAAGAGT+AGG + chr4_3:53010660-53010679 None:intergenic 75.0%
!! CCACCGCGACGGTGACGGGA+GGG + chr4_3:53010764-53010783 None:intergenic 75.0%
TCCCGTCACCGTCGCGGTGG+CGG - chr4_3:53010764-53010783 Msa0647050:CDS 75.0%
TGCCGCCACCGCGACGGTGA+CGG + chr4_3:53010769-53010788 None:intergenic 75.0%
! CGCGGTGGCGGCATCCCTTC+CGG - chr4_3:53010776-53010795 Msa0647050:CDS 75.0%
! CCCTCCCGTCACCGTCGCGG+TGG - chr4_3:53010761-53010780 Msa0647050:CDS 80.0%
!!! GCCACCGCGACGGTGACGGG+AGG + chr4_3:53010765-53010784 None:intergenic 80.0%
! GCCGCCACCGCGACGGTGAC+GGG + chr4_3:53010768-53010787 None:intergenic 80.0%
! CGGGGACACGGCGGCCGGAA+GGG + chr4_3:53010793-53010812 None:intergenic 80.0%
!! TGTGGCGGGGACACGGCGGC+CGG + chr4_3:53010798-53010817 None:intergenic 80.0%
! TGACGGCGGCGACGGCGGCC+GGG + chr4_3:53010671-53010690 None:intergenic 85.0%
! CTGACGGCGGCGACGGCGGC+CGG + chr4_3:53010672-53010691 None:intergenic 85.0%
! GCGGGGACACGGCGGCCGGA+AGG + chr4_3:53010794-53010813 None:intergenic 85.0%
! ACGGCGGCGACGGCGGCCGG+GGG + chr4_3:53010669-53010688 None:intergenic 90.0%
! GACGGCGGCGACGGCGGCCG+GGG + chr4_3:53010670-53010689 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 53010342 53015810 53010342 ID=Msa0647050;Name=Msa0647050
chr4_3 mRNA 53010342 53015810 53010342 ID=Msa0647050-mRNA-1;Parent=Msa0647050;Name=Msa0647050-mRNA-1;_AED=0.10;_eAED=0.10;_QI=12|1|1|1|1|1|18|404|881
chr4_3 exon 53010342 53010820 53010342 ID=Msa0647050-mRNA-1:exon:13139;Parent=Msa0647050-mRNA-1
chr4_3 exon 53010917 53010970 53010917 ID=Msa0647050-mRNA-1:exon:13138;Parent=Msa0647050-mRNA-1
chr4_3 exon 53011056 53011192 53011056 ID=Msa0647050-mRNA-1:exon:13137;Parent=Msa0647050-mRNA-1
chr4_3 exon 53011274 53011352 53011274 ID=Msa0647050-mRNA-1:exon:13136;Parent=Msa0647050-mRNA-1
chr4_3 exon 53011433 53011513 53011433 ID=Msa0647050-mRNA-1:exon:13135;Parent=Msa0647050-mRNA-1
chr4_3 exon 53011625 53011786 53011625 ID=Msa0647050-mRNA-1:exon:13134;Parent=Msa0647050-mRNA-1
chr4_3 exon 53011883 53011979 53011883 ID=Msa0647050-mRNA-1:exon:13133;Parent=Msa0647050-mRNA-1
chr4_3 exon 53012271 53012431 53012271 ID=Msa0647050-mRNA-1:exon:13132;Parent=Msa0647050-mRNA-1
chr4_3 exon 53012595 53012693 53012595 ID=Msa0647050-mRNA-1:exon:13131;Parent=Msa0647050-mRNA-1
chr4_3 exon 53012779 53012991 53012779 ID=Msa0647050-mRNA-1:exon:13130;Parent=Msa0647050-mRNA-1
chr4_3 exon 53013070 53013183 53013070 ID=Msa0647050-mRNA-1:exon:13129;Parent=Msa0647050-mRNA-1
chr4_3 exon 53013261 53013383 53013261 ID=Msa0647050-mRNA-1:exon:13128;Parent=Msa0647050-mRNA-1
chr4_3 exon 53013483 53013554 53013483 ID=Msa0647050-mRNA-1:exon:13127;Parent=Msa0647050-mRNA-1
chr4_3 exon 53013639 53013771 53013639 ID=Msa0647050-mRNA-1:exon:13126;Parent=Msa0647050-mRNA-1
chr4_3 exon 53014464 53014545 53014464 ID=Msa0647050-mRNA-1:exon:13125;Parent=Msa0647050-mRNA-1
chr4_3 exon 53014637 53014765 53014637 ID=Msa0647050-mRNA-1:exon:13124;Parent=Msa0647050-mRNA-1
chr4_3 exon 53014872 53015540 53014872 ID=Msa0647050-mRNA-1:exon:13123;Parent=Msa0647050-mRNA-1
chr4_3 exon 53015633 53015810 53015633 ID=Msa0647050-mRNA-1:exon:13122;Parent=Msa0647050-mRNA-1
chr4_3 five_prime_UTR 53015799 53015810 53015799 ID=Msa0647050-mRNA-1:five_prime_utr;Parent=Msa0647050-mRNA-1
chr4_3 CDS 53015633 53015798 53015633 ID=Msa0647050-mRNA-1:cds;Parent=Msa0647050-mRNA-1
chr4_3 CDS 53014872 53015540 53014872 ID=Msa0647050-mRNA-1:cds;Parent=Msa0647050-mRNA-1
chr4_3 CDS 53014637 53014765 53014637 ID=Msa0647050-mRNA-1:cds;Parent=Msa0647050-mRNA-1
chr4_3 CDS 53014464 53014545 53014464 ID=Msa0647050-mRNA-1:cds;Parent=Msa0647050-mRNA-1
chr4_3 CDS 53013639 53013771 53013639 ID=Msa0647050-mRNA-1:cds;Parent=Msa0647050-mRNA-1
chr4_3 CDS 53013483 53013554 53013483 ID=Msa0647050-mRNA-1:cds;Parent=Msa0647050-mRNA-1
chr4_3 CDS 53013261 53013383 53013261 ID=Msa0647050-mRNA-1:cds;Parent=Msa0647050-mRNA-1
chr4_3 CDS 53013070 53013183 53013070 ID=Msa0647050-mRNA-1:cds;Parent=Msa0647050-mRNA-1
chr4_3 CDS 53012779 53012991 53012779 ID=Msa0647050-mRNA-1:cds;Parent=Msa0647050-mRNA-1
chr4_3 CDS 53012595 53012693 53012595 ID=Msa0647050-mRNA-1:cds;Parent=Msa0647050-mRNA-1
chr4_3 CDS 53012271 53012431 53012271 ID=Msa0647050-mRNA-1:cds;Parent=Msa0647050-mRNA-1
chr4_3 CDS 53011883 53011979 53011883 ID=Msa0647050-mRNA-1:cds;Parent=Msa0647050-mRNA-1
chr4_3 CDS 53011625 53011786 53011625 ID=Msa0647050-mRNA-1:cds;Parent=Msa0647050-mRNA-1
chr4_3 CDS 53011433 53011513 53011433 ID=Msa0647050-mRNA-1:cds;Parent=Msa0647050-mRNA-1
chr4_3 CDS 53011274 53011352 53011274 ID=Msa0647050-mRNA-1:cds;Parent=Msa0647050-mRNA-1
chr4_3 CDS 53011056 53011192 53011056 ID=Msa0647050-mRNA-1:cds;Parent=Msa0647050-mRNA-1
chr4_3 CDS 53010917 53010970 53010917 ID=Msa0647050-mRNA-1:cds;Parent=Msa0647050-mRNA-1
chr4_3 CDS 53010746 53010820 53010746 ID=Msa0647050-mRNA-1:cds;Parent=Msa0647050-mRNA-1
chr4_3 three_prime_UTR 53010342 53010745 53010342 ID=Msa0647050-mRNA-1:three_prime_utr;Parent=Msa0647050-mRNA-1
Gene Sequence

>Msa0647050

ATGTTCTGGCGGGAAAACAAGTACTCTTTCCCCGCCATATTTCGCAGTTACATCTCCATTCTCACTCTTCTCCTCACTCACTTCTCATTTCTCATTTCTCATTTTCCATTCCCGCGTTTTCACAAATCCATGGCTTCCGATTCCACTCCAATGGATTCCAACAATGGTCCTTCTTCACCGGACAATTCCAATTCAAGTCCAATTGCCAACACCTACTCTTCCCCCGGCCGCCGTCGCCGCCGTCAGTCAATTACTCCATCCGGAACTCCTCAACCGAACAGATCTCGCTTCGCTTCCTCCGATGCAACTCCAACTCCCTCCCGTCACCGTCGCGGTGGCGGCATCCCTTCCGGCCGCCGTGTCCCCGCCACACCAACTTCCACCTCCGAAGACTTTCCTATGTCTTCCGAAGGCGGTGACGGTTACGACATGGATGACGCTGGTCCTACTTACGTTTGGGGGACTAACATTAGCGTGGAGGATGTGAATGATGCGATTCAGAGGTTTTTGAAGCATTTTAGAGAAAAATCTGCTTCTCAAGGTGGTGATGATGATTTGGATATGGATTTGGATATTGAAGGGAAGTATGAGAAATTGATCAAACAGGTTATTGAATTGGAAGGTGAGTCTATTGATGTTGATGCACGTGATGTTTTTGATCACGATCACGAATTGTATAGTAAGATGGTGAGGTATCCTCTCGAGGTGCTTGCCATTTTTGATATGGTTTTGATGAACATGGTTACTAGGATGAACCCTATGTTTGAAAAGCATGTTCAAACTAGGATTTTTAATCTTAAGAGCGCAACTTCAATGAGGAATTTGAATCCTTCTGATATTGAGAGGATGGTATCCATGAAGGGAATGATTATTCGGTGTAGCTCGATTATACCAGAAATCAGGGAAGCTATATTCAGGTGTCTAGTATGTGGATTCTGCTCTGACCCGGTTCCGGTGGAGAGAGGACGAATTGCTGAACCTACTGTTTGCTTGAGGGAAGAGTGTCAGTCCAAGAATTCGATGACACTTGTTCACAACCGATGCAAGTTTACTGATAAACAAATTGTGAGGCTTCAGGAGACACCTGACGAGATACCTGAAGGAGGAACGCCTCACACTGTTAGCTTGCTATTGCATGACAAACTGGTGGATACTGGAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATATACAGGGCTATGAGTGTCAGGGTAGGACCAACTCAGAGAACTGTTAAGTCATTGTTCAAAACGTATATTGATTGTCTTCACATAAAAAAGACATCAAAGTCCCGGATGCTGGTTGAGGATGCTATGGAGGTTGACAATGGCCAGGGCAGAAATCCAGAAGAAGTTTTATTTGATGAAGAAAAGGTGGCTAAACTGAAGGAGCTCTCAAAACAACCAGATATCTATGAAAGGCTGACAAAGTCACTGGCGCCAAACATCTGGGAGCTAGATGATGTAAAGAAAGGTCTTCTTTGCCAGCTTTTTGGGGGCAATGCTTTGAAGTTGGCATCTGGCGCTAGCTTTCGTGGTGATATAAATATTCTCCTTGTTGGTGATCCTGGTACAAGCAAGTCGCAGCTACTTCAGTACATACACAAACTTTCTCCACGTGGCATTTACACCAGTGGAAGGGGGAGCTCAGCGGTTGGATTGACTGCTTACGTGGCCAAAGATCCTGAAACAGGCGAAACTGTTCTTGAGAGTGGTGCCCTAGTTTTGAGCGACCGAGGTATCTGTTGCATTGATGAATTTGACAAAATGTCTGACAATGCAAGGAGCATGTTACACGAGGTGATGGAACAACAAACTGTTTCAATAGCAAAGGCAGGCATTATTGCTTCCCTCAATGCAAGGACTTCGGTGTTGGCTTGCGCAAACCCTAGCGGTTCACGATATAATCCCCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACTCTTTTGTCCAGGTTTGATTTAATTTACTTAATGCTTGATAAGGCTGATGAACAGACCGACCGACGACTTGCCAAACATATTGTTTCCCTGCACTATAAGGATTATGAGAACATGGAGCAGGATGTGTTGGACATTTCTACACTAACTGATTATGTTAGCTATGCCCGAAAGCACATACACCCACAACTATCAGATGAAGCTGCTGATGAATTGATTACAGGCTATGTAAAAATAAGGGGTAGGGGAAAATTCTCCGGAAGTAGCAAAAAGGTAATAACGGCAACTCCAAGGCAGATTGAGAGTCTATTACGACTTAGTGAAGCATTGGCTCGGATTCGCTTCTCAGAATCGGTTGAAAAACATGATGTGGTGGAGGCATTTCGGCTTCTGGAAGTTGCAATGCAGCAATCTGCAATGGATACCAGAACTGGAACTATTGACATGGATCTCATAACTACTGGTGTTTCGGCAAGCGAAAGGATGAGGCGAGAAAGTTTGATTCAAGACACTCGCAACATGATCATGGAGAAGATGCAAATTGGGGGACGTTCCATGCGGTTATTGGAGATATTGGAAGAACTAAAGAATCAGAGCCCTGGCAGCGAAATTCATCTTAATGATCTAAGGAGTGCAGTTGCTACTCTCGCCAGCGAAGGATTTGTTTCCATGGCTGGTGACAGTGTAAAAAGAACATGA
Protein sequence

>Msa0647050

MFWRENKYSFPAIFRSYISILTLLLTHFSFLISHFPFPRFHKSMASDSTPMDSNNGPSSPDNSNSSPIANTYSSPGRRRRRQSITPSGTPQPNRSRFASSDATPTPSRHRRGGGIPSGRRVPATPTSTSEDFPMSSEGGDGYDMDDAGPTYVWGTNISVEDVNDAIQRFLKHFREKSASQGGDDDLDMDLDIEGKYEKLIKQVIELEGESIDVDARDVFDHDHELYSKMVRYPLEVLAIFDMVLMNMVTRMNPMFEKHVQTRIFNLKSATSMRNLNPSDIERMVSMKGMIIRCSSIIPEIREAIFRCLVCGFCSDPVPVERGRIAEPTVCLREECQSKNSMTLVHNRCKFTDKQIVRLQETPDEIPEGGTPHTVSLLLHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTSKSRMLVEDAMEVDNGQGRNPEEVLFDEEKVAKLKELSKQPDIYERLTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVAKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLMLDKADEQTDRRLAKHIVSLHYKDYENMEQDVLDISTLTDYVSYARKHIHPQLSDEAADELITGYVKIRGRGKFSGSSKKVITATPRQIESLLRLSEALARIRFSESVEKHDVVEAFRLLEVAMQQSAMDTRTGTIDMDLITTGVSASERMRRESLIQDTRNMIMEKMQIGGRSMRLLEILEELKNQSPGSEIHLNDLRSAVATLASEGFVSMAGDSVKRT*