Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405010 | RZB96618.1 | 58.594 | 256 | 50 | 3 | 153 | 364 | 516 | 759 | 1.24e-79 | 279 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405010 | sp|Q0WL80|UGGG_ARATH | 57.426 | 101 | 41 | 1 | 265 | 363 | 689 | 789 | 1.18e-28 | 122 |
| Msa0405010 | sp|Q0WL80|UGGG_ARATH | 50.000 | 118 | 44 | 2 | 153 | 264 | 483 | 591 | 7.96e-26 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405010 | A0A445JDU5 | 58.594 | 256 | 50 | 3 | 153 | 364 | 516 | 759 | 5.92e-80 | 279 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0405010 | Msa0644140 | 0.827479 | 1.529229e-54 | -8.615850e-47 |
| Msa0405010 | Msa0842620 | 0.804757 | 1.853108e-49 | -8.615850e-47 |
| Msa0405010 | Msa1013220 | 0.813812 | 2.117375e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405010 | MtrunA17_Chr2g0277801 | 92.157 | 102 | 8 | 0 | 263 | 364 | 714 | 815 | 7.01e-56 | 199 |
| Msa0405010 | MtrunA17_Chr2g0277801 | 66.460 | 161 | 40 | 2 | 132 | 292 | 495 | 641 | 1.38e-54 | 195 |
| Msa0405010 | MtrunA17_Chr4g0025141 | 65.306 | 49 | 17 | 0 | 46 | 94 | 149 | 197 | 1.83e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0405010 | AT1G71220.1 | 57.426 | 101 | 41 | 1 | 265 | 363 | 689 | 789 | 1.20e-29 | 122 |
| Msa0405010 | AT1G71220.1 | 50.000 | 118 | 44 | 2 | 153 | 264 | 483 | 591 | 8.09e-27 | 114 |
| Msa0405010 | AT1G71220.2 | 57.426 | 101 | 41 | 1 | 265 | 363 | 689 | 789 | 1.21e-29 | 122 |
| Msa0405010 | AT1G71220.2 | 50.000 | 118 | 44 | 2 | 153 | 264 | 483 | 591 | 8.16e-27 | 114 |
| Msa0405010 | AT1G71220.3 | 57.426 | 101 | 41 | 1 | 265 | 363 | 727 | 827 | 1.37e-29 | 122 |
| Msa0405010 | AT1G71220.3 | 50.000 | 118 | 44 | 2 | 153 | 264 | 521 | 629 | 8.67e-27 | 114 |
Find 94 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACAGGAACAAGTGTATTT+TGG | 0.236459 | 3_2:-38501526 | Msa0405010:CDS |
| AATGTTGGACCTACTTATTC+AGG | 0.288412 | 3_2:-38501002 | Msa0405010:CDS |
| TTGAGCTGTTTAGGTCAATT+TGG | 0.289623 | 3_2:-38504713 | Msa0405010:intron |
| TCTCTTTCGATGTTTACTTT+TGG | 0.293916 | 3_2:-38501333 | Msa0405010:CDS |
| CCGCCAAGGCATAAATTATC+TGG | 0.296609 | 3_2:-38501093 | Msa0405010:CDS |
| AAATTTATCTCCATCCTCTT+TGG | 0.302296 | 3_2:+38502087 | None:intergenic |
| ATGACAGGCACCAGCCTAAA+AGG | 0.303296 | 3_2:+38501032 | None:intergenic |
| TGGGAACCTTGATAGAGTTT+TGG | 0.322662 | 3_2:+38505058 | None:intergenic |
| CTTGCTGTTGACATCACTTC+AGG | 0.333188 | 3_2:-38501134 | Msa0405010:CDS |
| ATCTTGATCCCAGTCTTCCC+TGG | 0.351754 | 3_2:-38502391 | Msa0405010:intron |
| AGCTATATCAAGGGGAACTA+TGG | 0.372428 | 3_2:-38501930 | Msa0405010:CDS |
| TGCGGGCAACATATCTGATA+TGG | 0.373472 | 3_2:-38502065 | Msa0405010:intron |
| TATCTGGTTAAATACTACTT+TGG | 0.385518 | 3_2:-38501077 | Msa0405010:CDS |
| AAAGTACATCACGCAGTTAG+AGG | 0.387239 | 3_2:-38502119 | Msa0405010:CDS |
| ATTCATTGTGGCCTTGCTCT+TGG | 0.387377 | 3_2:+38503617 | None:intergenic |
| AAAATCTCACACTGATGTAT+TGG | 0.390851 | 3_2:-38501497 | Msa0405010:CDS |
| TGCAAATACACCTCACAATC+AGG | 0.402450 | 3_2:+38504640 | None:intergenic |
| CACGGGCACGAATGTACTTA+AGG | 0.403846 | 3_2:+38504671 | None:intergenic |
| TAACCAGATAATTTATGCCT+TGG | 0.412765 | 3_2:+38501090 | None:intergenic |
| GAGGATGGAGATAAATTTGC+GGG | 0.417454 | 3_2:-38502082 | Msa0405010:CDS |
| ATCGAAAGAGATATGAACTT+TGG | 0.420496 | 3_2:+38501345 | None:intergenic |
| CCAGATAATTTATGCCTTGG+CGG | 0.427716 | 3_2:+38501093 | None:intergenic |
| GAGAACAAAAGCAGTATAGT+TGG | 0.437942 | 3_2:+38503674 | None:intergenic |
| TGGATCGATTGTGTTATGAT+TGG | 0.440332 | 3_2:+38505078 | None:intergenic |
| CGGATCTGATGTAGCTGCCC+AGG | 0.442212 | 3_2:+38502373 | None:intergenic |
| TTGTGAGGTGTATTTGCATA+GGG | 0.455464 | 3_2:-38504635 | Msa0405010:CDS |
| AGCAGCAAACCTTCACAGAT+TGG | 0.459898 | 3_2:+38505029 | None:intergenic |
| GGATCGATTGTGTTATGATT+GGG | 0.462684 | 3_2:+38505079 | None:intergenic |
| GTTGAATACCAGCTTCTGAT+AGG | 0.464415 | 3_2:+38501467 | None:intergenic |
| TCAAGACCACAAGTTGTTGC+TGG | 0.467446 | 3_2:+38502316 | None:intergenic |
| AAGAGCAAGGCCACAATGAA+TGG | 0.470646 | 3_2:-38503615 | Msa0405010:CDS |
| GGGGAACTATGGTATTGAAA+TGG | 0.472866 | 3_2:-38501919 | Msa0405010:CDS |
| ACGTCTCTTCAGCTATATCA+AGG | 0.480183 | 3_2:-38501940 | Msa0405010:CDS |
| TATCCTTCATTAGTGGGCTA+AGG | 0.481518 | 3_2:+38504148 | None:intergenic |
| GCAGCAAACCTTCACAGATT+GGG | 0.488671 | 3_2:+38505030 | None:intergenic |
| ACGGGCACGAATGTACTTAA+GGG | 0.489628 | 3_2:+38504672 | None:intergenic |
| GTGAATAACAAATATGTGGC+TGG | 0.494675 | 3_2:-38503582 | Msa0405010:CDS |
| ATTAACTACTTACACTCGTC+TGG | 0.498278 | 3_2:-38501288 | Msa0405010:CDS |
| CACAATCAGGCTCAGGTTCA+CGG | 0.499557 | 3_2:+38504653 | None:intergenic |
| GTATTTGCATAGGGGTTGGA+AGG | 0.499824 | 3_2:-38504626 | Msa0405010:CDS |
| AATGCACTATCCTTCATTAG+TGG | 0.502114 | 3_2:+38504141 | None:intergenic |
| GTGTTATGATTGGGAACTAC+GGG | 0.506035 | 3_2:+38505088 | None:intergenic |
| AGCCCTTAGCCCACTAATGA+AGG | 0.510330 | 3_2:-38504151 | Msa0405010:CDS |
| CCATCGTTCCCAATCTGTGA+AGG | 0.510526 | 3_2:-38505038 | Msa0405010:intron |
| CTTGATCCAGCAACAACTTG+TGG | 0.511453 | 3_2:-38502322 | Msa0405010:CDS |
| GTATTCAACGCTATAATCCT+CGG | 0.511958 | 3_2:-38501453 | Msa0405010:CDS |
| GGCTGGTGCCTGTCATGAGT+TGG | 0.512416 | 3_2:-38501025 | Msa0405010:CDS |
| GACAAATTCCTATCAGAAGC+TGG | 0.515961 | 3_2:-38501475 | Msa0405010:CDS |
| ATAGGGGTTGGAAGGGCGCA+AGG | 0.520769 | 3_2:-38504618 | Msa0405010:CDS |
| CAATGACATGATCATATCAA+TGG | 0.522376 | 3_2:+38502189 | None:intergenic |
| GGAGCAAGCGAAGCTGCAAA+CGG | 0.522934 | 3_2:+38504848 | None:intergenic |
| AGAACAAAAGCAGTATAGTT+GGG | 0.523250 | 3_2:+38503675 | None:intergenic |
| ACAATCAGGCTCAGGTTCAC+GGG | 0.524179 | 3_2:+38504654 | None:intergenic |
| ATCCTTCATTAGTGGGCTAA+GGG | 0.527718 | 3_2:+38504149 | None:intergenic |
| TCTCAATTATATTAAAGAGA+TGG | 0.529596 | 3_2:-38503655 | Msa0405010:CDS |
| ATCGATCCAAAACTCTATCA+AGG | 0.531216 | 3_2:-38505064 | Msa0405010:CDS |
| ATTGTGAGGTGTATTTGCAT+AGG | 0.532521 | 3_2:-38504636 | Msa0405010:CDS |
| TGATCCCTTTGAGAGAGAAA+AGG | 0.537081 | 3_2:+38504827 | None:intergenic |
| TATTCAACGCTATAATCCTC+GGG | 0.538721 | 3_2:-38501452 | Msa0405010:intron |
| ACGGCGAGATCCGAGACGAT+TGG | 0.539693 | 3_2:+38504867 | None:intergenic |
| CTCGGTGAATAACAAATATG+TGG | 0.540101 | 3_2:-38503586 | Msa0405010:CDS |
| CGTCTCTTCAGCTATATCAA+GGG | 0.540850 | 3_2:-38501939 | Msa0405010:CDS |
| CACAATGAATGGTGATAACT+CGG | 0.544301 | 3_2:-38503604 | Msa0405010:CDS |
| GTTGACATCACTTCAGGAAG+TGG | 0.544599 | 3_2:-38501128 | Msa0405010:CDS |
| TGAATTTATGACCAAGAGCA+AGG | 0.544612 | 3_2:-38503628 | Msa0405010:CDS |
| CCTGTCATGAGTTGGAATGT+TGG | 0.548304 | 3_2:-38501017 | Msa0405010:CDS |
| TCTTGATCCCAGTCTTCCCT+GGG | 0.548936 | 3_2:-38502390 | Msa0405010:intron |
| TGATGAGACCTAGAGAATAC+AGG | 0.549749 | 3_2:-38501542 | Msa0405010:intron |
| TGTGTTATGATTGGGAACTA+CGG | 0.557197 | 3_2:+38505087 | None:intergenic |
| AGCAACAACTTGTGGTCTTG+AGG | 0.559104 | 3_2:-38502314 | Msa0405010:CDS |
| AATAGCAGTCCTGAATAAGT+AGG | 0.559683 | 3_2:+38500993 | None:intergenic |
| AGGTGTATTTGCATAGGGGT+TGG | 0.559942 | 3_2:-38504630 | Msa0405010:CDS |
| CTTCACAGATTGGGAACGAT+GGG | 0.562217 | 3_2:+38505039 | None:intergenic |
| ATGCACTATCCTTCATTAGT+GGG | 0.569377 | 3_2:+38504142 | None:intergenic |
| TTGACATCACTTCAGGAAGT+GGG | 0.571258 | 3_2:-38501127 | Msa0405010:CDS |
| CCTTCACAGATTGGGAACGA+TGG | 0.573567 | 3_2:+38505038 | None:intergenic |
| CACAGGCTTTAAATCGTCCA+TGG | 0.578358 | 3_2:+38501166 | None:intergenic |
| CCAACATTCCAACTCATGAC+AGG | 0.578605 | 3_2:+38501017 | None:intergenic |
| ACAGCAAGAAGATGTGTCAC+AGG | 0.581776 | 3_2:+38501149 | None:intergenic |
| TACACCTCACAATCAGGCTC+AGG | 0.583588 | 3_2:+38504646 | None:intergenic |
| AGAGGATGGAGATAAATTTG+CGG | 0.584425 | 3_2:-38502083 | Msa0405010:CDS |
| GATCATATCAATGGACTGCA+AGG | 0.588883 | 3_2:+38502198 | None:intergenic |
| TATTGCAGTTCCAATCGTCT+CGG | 0.592269 | 3_2:-38504877 | Msa0405010:intron |
| TATTTGCATAGGGGTTGGAA+GGG | 0.595161 | 3_2:-38504625 | Msa0405010:CDS |
| GGGATTAAGTTATTCCGCCA+AGG | 0.601342 | 3_2:-38501107 | Msa0405010:CDS |
| TAGGGGTTGGAAGGGCGCAA+GGG | 0.602784 | 3_2:-38504617 | Msa0405010:intron |
| GGATCTGATGTAGCTGCCCA+GGG | 0.605022 | 3_2:+38502374 | None:intergenic |
| TGTGAGGTGTATTTGCATAG+GGG | 0.610340 | 3_2:-38504634 | Msa0405010:CDS |
| CGGGCACGAATGTACTTAAG+GGG | 0.616930 | 3_2:+38504673 | None:intergenic |
| AGTACAACTCCAAATCTCAC+AGG | 0.619291 | 3_2:+38502151 | None:intergenic |
| GTCTCTTCAGCTATATCAAG+GGG | 0.623088 | 3_2:-38501938 | Msa0405010:CDS |
| TGAACCTGAGCCTGATTGTG+AGG | 0.666720 | 3_2:-38504650 | Msa0405010:CDS |
| CGAGTTATCACCATTCATTG+TGG | 0.675443 | 3_2:+38503605 | None:intergenic |
| ACGAGTGTAAGTAGTTAATG+CGG | 0.691845 | 3_2:+38501292 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATATAATTTATGAAACA+TGG | + | chr3_2:38501598-38501617 | None:intergenic | 10.0% |
| !!! | AATTATATTATTTCTGTAAT+TGG | - | chr3_2:38501607-38501626 | Msa0405010:intron | 10.0% |
| !!! | CATAACTATAAATTTAAAAT+TGG | + | chr3_2:38503404-38503423 | None:intergenic | 10.0% |
| !!! | ACCATTTTTTTCAAAATAAA+CGG | + | chr3_2:38502031-38502050 | None:intergenic | 15.0% |
| !!! | TCTTTACTTGTTATATTTTA+GGG | - | chr3_2:38502098-38502117 | Msa0405010:CDS | 15.0% |
| !! | TTTAATCAATGCATTATTAT+TGG | - | chr3_2:38503469-38503488 | Msa0405010:intron | 15.0% |
| !!! | ATAATACCACCTAAATTTTT+GGG | + | chr3_2:38501549-38501568 | None:intergenic | 20.0% |
| !!! | AATAATACCACCTAAATTTT+TGG | + | chr3_2:38501550-38501569 | None:intergenic | 20.0% |
| !! | ATATAATTTATGAAACATGG+TGG | + | chr3_2:38501595-38501614 | None:intergenic | 20.0% |
| !! | AAAAATCAACTAAATTAGGT+GGG | + | chr3_2:38501760-38501779 | None:intergenic | 20.0% |
| !! | AAAAAATCAACTAAATTAGG+TGG | + | chr3_2:38501761-38501780 | None:intergenic | 20.0% |
| !! | TGCAAAAAATCAACTAAATT+AGG | + | chr3_2:38501764-38501783 | None:intergenic | 20.0% |
| !!! | TTTTGCACTTTCAATTAATT+CGG | - | chr3_2:38501777-38501796 | Msa0405010:intron | 20.0% |
| !!! | CTCTTTACTTGTTATATTTT+AGG | - | chr3_2:38502097-38502116 | Msa0405010:CDS | 20.0% |
| !!! | CTTTACTTGTTATATTTTAG+GGG | - | chr3_2:38502099-38502118 | Msa0405010:CDS | 20.0% |
| !! | TCTCAATTATATTAAAGAGA+TGG | - | chr3_2:38502350-38502369 | Msa0405010:CDS | 20.0% |
| !! | TTCATATCGTTTAATTATGA+GGG | + | chr3_2:38502715-38502734 | None:intergenic | 20.0% |
| !! | TTTCATTACAATACATTCAA+AGG | - | chr3_2:38502743-38502762 | Msa0405010:intron | 20.0% |
| !! | ACATATGTAATGTAAACTTA+AGG | + | chr3_2:38502782-38502801 | None:intergenic | 20.0% |
| !!! | TATGTTATTATAGTGTTTTG+AGG | - | chr3_2:38502797-38502816 | Msa0405010:intron | 20.0% |
| !!! | ACATTATTGCTTTTGAAATA+TGG | - | chr3_2:38502979-38502998 | Msa0405010:intron | 20.0% |
| !! | AGTCAATACTTATACTTATT+AGG | + | chr3_2:38503510-38503529 | None:intergenic | 20.0% |
| !! | AAGAAGATTAATAGTTAAAC+AGG | + | chr3_2:38504354-38504373 | None:intergenic | 20.0% |
| !!! | TTTAATCAATTGATTTTACC+AGG | - | chr3_2:38504418-38504437 | Msa0405010:intron | 20.0% |
| !! | GTTGATATGTTAGAATAAAT+AGG | - | chr3_2:38504749-38504768 | Msa0405010:intron | 20.0% |
| !!! | TTGTACTCATTTGTTTTTCT+TGG | - | chr3_2:38501264-38501283 | Msa0405010:intron | 25.0% |
| !! | TAATACCACCTAAATTTTTG+GGG | + | chr3_2:38501548-38501567 | None:intergenic | 25.0% |
| !! | ACACAAGAAAGTGTAAAATT+CGG | - | chr3_2:38501690-38501709 | Msa0405010:intron | 25.0% |
| ! | CTTTCAATTAATTCGGTTAT+AGG | - | chr3_2:38501784-38501803 | Msa0405010:intron | 25.0% |
| !!! | GCCGTTTATTTTGAAAAAAA+TGG | - | chr3_2:38502027-38502046 | Msa0405010:intron | 25.0% |
| !!! | TTAACATGGTTTTGATTCTA+AGG | - | chr3_2:38502252-38502271 | Msa0405010:intron | 25.0% |
| ! | CTTCATATCGTTTAATTATG+AGG | + | chr3_2:38502716-38502735 | None:intergenic | 25.0% |
| ! | AGTATATATACCATACATAG+AGG | - | chr3_2:38502940-38502959 | Msa0405010:intron | 25.0% |
| !! | TTCATACTTATAACTTGCAA+TGG | - | chr3_2:38503035-38503054 | Msa0405010:intron | 25.0% |
| !! | TGTCTTCTTATAATTTGCAA+TGG | - | chr3_2:38503112-38503131 | Msa0405010:intron | 25.0% |
| ! | TGAGTTTCTATATGTTAAGT+TGG | - | chr3_2:38503146-38503165 | Msa0405010:intron | 25.0% |
| !! | GTAATTTTTCATTTGAACGT+AGG | - | chr3_2:38503581-38503600 | Msa0405010:CDS | 25.0% |
| !!! | AGAATACACGAACATTTTTT+AGG | - | chr3_2:38503985-38504004 | Msa0405010:intron | 25.0% |
| ! | TAAATAAAAGCAGCAAAACA+AGG | + | chr3_2:38504184-38504203 | None:intergenic | 25.0% |
| !! | TGATCTTGTGTATAATTTGT+TGG | + | chr3_2:38504217-38504236 | None:intergenic | 25.0% |
| !!! | TTTTTAAAATATCATACCCG+AGG | + | chr3_2:38504572-38504591 | None:intergenic | 25.0% |
| ! | ATATTGTATAGTATGTTGTG+TGG | - | chr3_2:38504595-38504614 | Msa0405010:intron | 25.0% |
| ! | TATCTGGTTAAATACTACTT+TGG | - | chr3_2:38504928-38504947 | Msa0405010:intron | 25.0% |
| !! | TGAATGTTATTCTTCCTTTT+AGG | - | chr3_2:38504959-38504978 | Msa0405010:intron | 25.0% |
| AACGATTGAGAACAGAATTT+GGG | + | chr3_2:38501023-38501042 | None:intergenic | 30.0% | |
| AAACGATTGAGAACAGAATT+TGG | + | chr3_2:38501024-38501043 | None:intergenic | 30.0% | |
| ! | GATTCGTTTAAAATCTGTGA+AGG | - | chr3_2:38501047-38501066 | Msa0405010:CDS | 30.0% |
| AACTTTGACCCCAAAAATTT+AGG | - | chr3_2:38501537-38501556 | Msa0405010:intron | 30.0% | |
| ! | ATGTTTTTCCAGATTAGACA+TGG | - | chr3_2:38501664-38501683 | Msa0405010:intron | 30.0% |
| ! | AACTTTTAACATTGTCCAAG+TGG | - | chr3_2:38501900-38501919 | Msa0405010:CDS | 30.0% |
| TCGTTCAACTCAATTGAAAA+AGG | - | chr3_2:38501951-38501970 | Msa0405010:intron | 30.0% | |
| CGTTCAACTCAATTGAAAAA+GGG | - | chr3_2:38501952-38501971 | Msa0405010:intron | 30.0% | |
| CAGGTATAGCTAACAATTAA+CGG | + | chr3_2:38502219-38502238 | None:intergenic | 30.0% | |
| TGTTAAATTCACCAATTGAC+AGG | + | chr3_2:38502238-38502257 | None:intergenic | 30.0% | |
| GTCAATTGGTGAATTTAACA+TGG | - | chr3_2:38502238-38502257 | Msa0405010:intron | 30.0% | |
| AACATACAATGAAACAAAGC+AGG | + | chr3_2:38502307-38502326 | None:intergenic | 30.0% | |
| !! | GCTTTGTTTCATTGTATGTT+AGG | - | chr3_2:38502307-38502326 | Msa0405010:intron | 30.0% |
| AGAACAAAAGCAGTATAGTT+GGG | + | chr3_2:38502333-38502352 | None:intergenic | 30.0% | |
| !! | GCAGATAAATTTGTTGTGTT+AGG | + | chr3_2:38502572-38502591 | None:intergenic | 30.0% |
| !! | TTATCTGCTGACTTCTAAAT+TGG | - | chr3_2:38502584-38502603 | Msa0405010:intron | 30.0% |
| !!! | TGCTTTTGAAATTGGTAGTT+TGG | - | chr3_2:38502887-38502906 | Msa0405010:intron | 30.0% |
| !!! | TTTTGAAATTGGTAGTTTGG+TGG | - | chr3_2:38502890-38502909 | Msa0405010:intron | 30.0% |
| ! | TTTGAAATTGGTAGTTTGGT+GGG | - | chr3_2:38502891-38502910 | Msa0405010:intron | 30.0% |
| ! | TTGCTTTCCATATTTTTCTG+AGG | - | chr3_2:38503353-38503372 | Msa0405010:intron | 30.0% |
| TTATGCACCTCAGAAAAATA+TGG | + | chr3_2:38503363-38503382 | None:intergenic | 30.0% | |
| !! | TGCATTGATTAAACCTTGTT+CGG | + | chr3_2:38503462-38503481 | None:intergenic | 30.0% |
| GAATACTTGATTCTCAAACT+AGG | - | chr3_2:38503532-38503551 | Msa0405010:intron | 30.0% | |
| ! | CAGCATGGAAAAGATTTTTA+CGG | + | chr3_2:38503655-38503674 | None:intergenic | 30.0% |
| !! | AGCATGAAAATGTTAGTCTT+GGG | + | chr3_2:38503729-38503748 | None:intergenic | 30.0% |
| ! | TAGCATGAAAATGTTAGTCT+TGG | + | chr3_2:38503730-38503749 | None:intergenic | 30.0% |
| CAATGACATGATCATATCAA+TGG | + | chr3_2:38503819-38503838 | None:intergenic | 30.0% | |
| ! | AATAGTTTTCCTGTGAGATT+TGG | - | chr3_2:38503845-38503864 | Msa0405010:intron | 30.0% |
| AAATTTATCTCCATCCTCTT+TGG | + | chr3_2:38503921-38503940 | None:intergenic | 30.0% | |
| CGTGTATTCTTAAACTGTTA+TGG | + | chr3_2:38503975-38503994 | None:intergenic | 30.0% | |
| !!! | CATTTTTTAGGAGAGTTTTC+TGG | - | chr3_2:38503997-38504016 | Msa0405010:intron | 30.0% |
| !! | TCAAGTTTTTGAGCAATGTA+TGG | - | chr3_2:38504112-38504131 | Msa0405010:intron | 30.0% |
| ACACAAGATCAATATGACTT+AGG | - | chr3_2:38504226-38504245 | Msa0405010:intron | 30.0% | |
| CACAAGATCAATATGACTTA+GGG | - | chr3_2:38504227-38504246 | Msa0405010:intron | 30.0% | |
| !! | AATCAATTGATTTTACCAGG+AGG | - | chr3_2:38504421-38504440 | Msa0405010:intron | 30.0% |
| ! | ATACAGGAACAAGTGTATTT+TGG | - | chr3_2:38504479-38504498 | Msa0405010:intron | 30.0% |
| AAAATCTCACACTGATGTAT+TGG | - | chr3_2:38504508-38504527 | Msa0405010:intron | 30.0% | |
| ATCGAAAGAGATATGAACTT+TGG | + | chr3_2:38504663-38504682 | None:intergenic | 30.0% | |
| ! | TCTCTTTCGATGTTTACTTT+TGG | - | chr3_2:38504672-38504691 | Msa0405010:CDS | 30.0% |
| ! | TGGTCTTTTGTCTTATCATT+TGG | - | chr3_2:38504796-38504815 | Msa0405010:intron | 30.0% |
| TAACCAGATAATTTATGCCT+TGG | + | chr3_2:38504918-38504937 | None:intergenic | 30.0% | |
| TGTGTTATGATTGGGAACTA+CGG | + | chr3_2:38500921-38500940 | None:intergenic | 35.0% | |
| GGATCGATTGTGTTATGATT+GGG | + | chr3_2:38500929-38500948 | None:intergenic | 35.0% | |
| TGGATCGATTGTGTTATGAT+TGG | + | chr3_2:38500930-38500949 | None:intergenic | 35.0% | |
| ATCGATCCAAAACTCTATCA+AGG | - | chr3_2:38500941-38500960 | Msa0405010:CDS | 35.0% | |
| TGAGTACAAGCAAACATAAC+AGG | + | chr3_2:38501253-38501272 | None:intergenic | 35.0% | |
| AATTGACCTAAACAGCTCAA+AGG | + | chr3_2:38501292-38501311 | None:intergenic | 35.0% | |
| TTGAGCTGTTTAGGTCAATT+TGG | - | chr3_2:38501292-38501311 | Msa0405010:CDS | 35.0% | |
| ATTGTGAGGTGTATTTGCAT+AGG | - | chr3_2:38501369-38501388 | Msa0405010:intron | 35.0% | |
| TTGTGAGGTGTATTTGCATA+GGG | - | chr3_2:38501370-38501389 | Msa0405010:intron | 35.0% | |
| TTCAAACTGTGCTTGTTCTT+TGG | - | chr3_2:38501417-38501436 | Msa0405010:intron | 35.0% | |
| TTTGACCCCAAAAATTTAGG+TGG | - | chr3_2:38501540-38501559 | Msa0405010:intron | 35.0% | |
| !!! | TGGCAACAACACTTTTTCTT+AGG | + | chr3_2:38501575-38501594 | None:intergenic | 35.0% |
| GTATGTCATACTTGACTATG+TGG | - | chr3_2:38501634-38501653 | Msa0405010:intron | 35.0% | |
| AATCAACTAAATTAGGTGGG+TGG | + | chr3_2:38501757-38501776 | None:intergenic | 35.0% | |
| ATGCACTATCCTTCATTAGT+GGG | + | chr3_2:38501866-38501885 | None:intergenic | 35.0% | |
| AATGCACTATCCTTCATTAG+TGG | + | chr3_2:38501867-38501886 | None:intergenic | 35.0% | |
| TAACATTGTCCAAGTGGAAA+AGG | - | chr3_2:38501906-38501925 | Msa0405010:CDS | 35.0% | |
| AACATTGTCCAAGTGGAAAA+GGG | - | chr3_2:38501907-38501926 | Msa0405010:CDS | 35.0% | |
| TTGAAAAAGGGAGATTGTTG+TGG | - | chr3_2:38501964-38501983 | Msa0405010:intron | 35.0% | |
| !! | GATGTTTGTTGTTGCAATGT+TGG | - | chr3_2:38502152-38502171 | Msa0405010:CDS | 35.0% |
| TGTTAGCTATACCTGTCAAT+TGG | - | chr3_2:38502224-38502243 | Msa0405010:intron | 35.0% | |
| ! | AAGGTAACTGATAGTGTTCT+TGG | - | chr3_2:38502271-38502290 | Msa0405010:intron | 35.0% |
| GAGAACAAAAGCAGTATAGT+TGG | + | chr3_2:38502334-38502353 | None:intergenic | 35.0% | |
| TGAATTTATGACCAAGAGCA+AGG | - | chr3_2:38502377-38502396 | Msa0405010:CDS | 35.0% | |
| CACAATGAATGGTGATAACT+CGG | - | chr3_2:38502401-38502420 | Msa0405010:intron | 35.0% | |
| CTCGGTGAATAACAAATATG+TGG | - | chr3_2:38502419-38502438 | Msa0405010:intron | 35.0% | |
| GTGAATAACAAATATGTGGC+TGG | - | chr3_2:38502423-38502442 | Msa0405010:intron | 35.0% | |
| ACCTTCTTCATTCAAGAACA+GGG | + | chr3_2:38502492-38502511 | None:intergenic | 35.0% | |
| TGTTCTTGAATGAAGAAGGT+GGG | - | chr3_2:38502492-38502511 | Msa0405010:intron | 35.0% | |
| TTTGTGTCTGTCATAACCTA+AGG | - | chr3_2:38502677-38502696 | Msa0405010:intron | 35.0% | |
| !! | AAGGCCATTTTAGTGTTTTG+AGG | - | chr3_2:38502834-38502853 | Msa0405010:intron | 35.0% |
| CTGACCTCAAAACACTAAAA+TGG | + | chr3_2:38502841-38502860 | None:intergenic | 35.0% | |
| !!! | TAGTGTTTTGAGGTCAGAAT+TGG | - | chr3_2:38502844-38502863 | Msa0405010:intron | 35.0% |
| !! | AATTGGTTTGTTATCTCAGC+TGG | - | chr3_2:38502861-38502880 | Msa0405010:intron | 35.0% |
| !! | ATTGGTTTGTTATCTCAGCT+GGG | - | chr3_2:38502862-38502881 | Msa0405010:intron | 35.0% |
| AATGGATGACAAGAGAACTA+AGG | - | chr3_2:38503244-38503263 | Msa0405010:intron | 35.0% | |
| TTCTTGATTGAATCCGAACA+AGG | - | chr3_2:38503446-38503465 | Msa0405010:intron | 35.0% | |
| GATCAAGAACAAAAACAGCA+TGG | + | chr3_2:38503670-38503689 | None:intergenic | 35.0% | |
| !! | GCATGAAAATGTTAGTCTTG+GGG | + | chr3_2:38503728-38503747 | None:intergenic | 35.0% |
| ! | AGAGGATCATTTTACCAAAG+AGG | - | chr3_2:38503904-38503923 | Msa0405010:intron | 35.0% |
| ! | GATCATTTTACCAAAGAGGA+TGG | - | chr3_2:38503908-38503927 | Msa0405010:intron | 35.0% |
| AGAGGATGGAGATAAATTTG+CGG | - | chr3_2:38503922-38503941 | Msa0405010:intron | 35.0% | |
| AAGATAAGTCGATCCAAAAC+AGG | + | chr3_2:38504253-38504272 | None:intergenic | 35.0% | |
| GTATTCAACGCTATAATCCT+CGG | - | chr3_2:38504552-38504571 | Msa0405010:intron | 35.0% | |
| TATTCAACGCTATAATCCTC+GGG | - | chr3_2:38504553-38504572 | Msa0405010:intron | 35.0% | |
| !! | TTCGATGTTTACTTTTGGAG+AGG | - | chr3_2:38504677-38504696 | Msa0405010:CDS | 35.0% |
| ACGAGTGTAAGTAGTTAATG+CGG | + | chr3_2:38504716-38504735 | None:intergenic | 35.0% | |
| ATTAACTACTTACACTCGTC+TGG | - | chr3_2:38504717-38504736 | Msa0405010:intron | 35.0% | |
| ! | GTTTTTATCCAATACAGCCA+TGG | - | chr3_2:38504822-38504841 | Msa0405010:intron | 35.0% |
| ! | TGTTATTCTTCCTTTTAGGC+TGG | - | chr3_2:38504963-38504982 | Msa0405010:intron | 35.0% |
| AATGTTGGACCTACTTATTC+AGG | - | chr3_2:38505003-38505022 | Msa0405010:intron | 35.0% | |
| AATAGCAGTCCTGAATAAGT+AGG | + | chr3_2:38505015-38505034 | None:intergenic | 35.0% | |
| GTGTTATGATTGGGAACTAC+GGG | + | chr3_2:38500920-38500939 | None:intergenic | 40.0% | |
| ! | TGGGAACCTTGATAGAGTTT+TGG | + | chr3_2:38500950-38500969 | None:intergenic | 40.0% |
| ! | GAATTTGGGATCCATCTTGA+GGG | + | chr3_2:38501009-38501028 | None:intergenic | 40.0% |
| ! | AGAATTTGGGATCCATCTTG+AGG | + | chr3_2:38501010-38501029 | None:intergenic | 40.0% |
| ! | TTGGAACTGCAATAACGGAA+CGG | + | chr3_2:38501122-38501141 | None:intergenic | 40.0% |
| GACGATTGGAACTGCAATAA+CGG | + | chr3_2:38501127-38501146 | None:intergenic | 40.0% | |
| TATTGCAGTTCCAATCGTCT+CGG | - | chr3_2:38501128-38501147 | Msa0405010:CDS | 40.0% | |
| ! | TTGCTCCTTTTCTCTCTCAA+AGG | - | chr3_2:38501173-38501192 | Msa0405010:intron | 40.0% |
| ! | TGCTCCTTTTCTCTCTCAAA+GGG | - | chr3_2:38501174-38501193 | Msa0405010:intron | 40.0% |
| ! | TGATCCCTTTGAGAGAGAAA+AGG | + | chr3_2:38501181-38501200 | None:intergenic | 40.0% |
| ! | TTTTCTCTCTCAAAGGGATC+AGG | - | chr3_2:38501180-38501199 | Msa0405010:intron | 40.0% |
| TTGGATCCTTTGAGCTGTTT+AGG | - | chr3_2:38501283-38501302 | Msa0405010:intron | 40.0% | |
| TGCAAATACACCTCACAATC+AGG | + | chr3_2:38501368-38501387 | None:intergenic | 40.0% | |
| TGTGAGGTGTATTTGCATAG+GGG | - | chr3_2:38501371-38501390 | Msa0405010:intron | 40.0% | |
| TATTTGCATAGGGGTTGGAA+GGG | - | chr3_2:38501380-38501399 | Msa0405010:intron | 40.0% | |
| TGTGTAGACCATGTCTAATC+TGG | + | chr3_2:38501675-38501694 | None:intergenic | 40.0% | |
| !! | ATCCTTCATTAGTGGGCTAA+GGG | + | chr3_2:38501859-38501878 | None:intergenic | 40.0% |
| !! | TATCCTTCATTAGTGGGCTA+AGG | + | chr3_2:38501860-38501879 | None:intergenic | 40.0% |
| CGAGTTATCACCATTCATTG+TGG | + | chr3_2:38502403-38502422 | None:intergenic | 40.0% | |
| ACCCTGTTCTTGAATGAAGA+AGG | - | chr3_2:38502488-38502507 | Msa0405010:intron | 40.0% | |
| CACCTTCTTCATTCAAGAAC+AGG | + | chr3_2:38502493-38502512 | None:intergenic | 40.0% | |
| CTGTTCTTGAATGAAGAAGG+TGG | - | chr3_2:38502491-38502510 | Msa0405010:intron | 40.0% | |
| TATTGAGTCATTGCCCTCAA+AGG | + | chr3_2:38502526-38502545 | None:intergenic | 40.0% | |
| CTCAATATTAGCAGAGCAGT+AGG | - | chr3_2:38502539-38502558 | Msa0405010:intron | 40.0% | |
| ! | AGGGTGTAAGTTTTCACCTT+AGG | + | chr3_2:38502696-38502715 | None:intergenic | 40.0% |
| ! | TGAGGTGCTATATAGTGAGA+AGG | - | chr3_2:38502815-38502834 | Msa0405010:intron | 40.0% |
| !!! | GCTGGGTTTGCTTTTGAAAT+TGG | - | chr3_2:38502879-38502898 | Msa0405010:intron | 40.0% |
| ! | AACTCACTAGCCTCTATGTA+TGG | + | chr3_2:38502953-38502972 | None:intergenic | 40.0% |
| ! | CTCTTTTCAGTGCTTCACAA+TGG | - | chr3_2:38503226-38503245 | Msa0405010:intron | 40.0% |
| ACAGGTTAGACCGTATCTAT+AGG | - | chr3_2:38503294-38503313 | Msa0405010:intron | 40.0% | |
| TTAGACCGTATCTATAGGTG+AGG | - | chr3_2:38503299-38503318 | Msa0405010:intron | 40.0% | |
| ATCCACCTCACCTATAGATA+CGG | + | chr3_2:38503307-38503326 | None:intergenic | 40.0% | |
| ATCTATAGGTGAGGTGGATA+AGG | - | chr3_2:38503308-38503327 | Msa0405010:intron | 40.0% | |
| ! | TCTGAGGTGCATAATAGTCA+TGG | - | chr3_2:38503369-38503388 | Msa0405010:intron | 40.0% |
| !! | GATCATATCAATGGACTGCA+AGG | + | chr3_2:38503810-38503829 | None:intergenic | 40.0% |
| AGTACAACTCCAAATCTCAC+AGG | + | chr3_2:38503857-38503876 | None:intergenic | 40.0% | |
| AAAGTACATCACGCAGTTAG+AGG | - | chr3_2:38503886-38503905 | Msa0405010:intron | 40.0% | |
| GAGGATGGAGATAAATTTGC+GGG | - | chr3_2:38503923-38503942 | Msa0405010:intron | 40.0% | |
| ACGTCTCTTCAGCTATATCA+AGG | - | chr3_2:38504065-38504084 | Msa0405010:intron | 40.0% | |
| CGTCTCTTCAGCTATATCAA+GGG | - | chr3_2:38504066-38504085 | Msa0405010:intron | 40.0% | |
| GTCTCTTCAGCTATATCAAG+GGG | - | chr3_2:38504067-38504086 | Msa0405010:intron | 40.0% | |
| AGCTATATCAAGGGGAACTA+TGG | - | chr3_2:38504075-38504094 | Msa0405010:intron | 40.0% | |
| ! | GGGGAACTATGGTATTGAAA+TGG | - | chr3_2:38504086-38504105 | Msa0405010:intron | 40.0% |
| ! | ATATGACTTAGGGCCTGTTT+TGG | - | chr3_2:38504237-38504256 | Msa0405010:intron | 40.0% |
| TCTCTAGGTCTCATCATTCA+AGG | + | chr3_2:38504459-38504478 | None:intergenic | 40.0% | |
| TGATGAGACCTAGAGAATAC+AGG | - | chr3_2:38504463-38504482 | Msa0405010:intron | 40.0% | |
| CACTTGTTCCTGTATTCTCT+AGG | + | chr3_2:38504474-38504493 | None:intergenic | 40.0% | |
| GACAAATTCCTATCAGAAGC+TGG | - | chr3_2:38504530-38504549 | Msa0405010:intron | 40.0% | |
| GTTGAATACCAGCTTCTGAT+AGG | + | chr3_2:38504541-38504560 | None:intergenic | 40.0% | |
| CTTTCCTAATTCCTACACAC+TGG | - | chr3_2:38504776-38504795 | Msa0405010:intron | 40.0% | |
| AAGACCAGTGTGTAGGAATT+AGG | + | chr3_2:38504783-38504802 | None:intergenic | 40.0% | |
| AAGACAAAAGACCAGTGTGT+AGG | + | chr3_2:38504790-38504809 | None:intergenic | 40.0% | |
| TAAATCGTCCATGGCTGTAT+TGG | + | chr3_2:38504833-38504852 | None:intergenic | 40.0% | |
| TTGACATCACTTCAGGAAGT+GGG | - | chr3_2:38504878-38504897 | Msa0405010:intron | 40.0% | |
| CCAGATAATTTATGCCTTGG+CGG | + | chr3_2:38504915-38504934 | None:intergenic | 40.0% | |
| CTTCACAGATTGGGAACGAT+GGG | + | chr3_2:38500969-38500988 | None:intergenic | 45.0% | |
| GCAGCAAACCTTCACAGATT+GGG | + | chr3_2:38500978-38500997 | None:intergenic | 45.0% | |
| AGCAGCAAACCTTCACAGAT+TGG | + | chr3_2:38500979-38500998 | None:intergenic | 45.0% | |
| GGAAAACACACACACACAGA+GGG | + | chr3_2:38501232-38501251 | None:intergenic | 45.0% | |
| AGGAAAACACACACACACAG+AGG | + | chr3_2:38501233-38501252 | None:intergenic | 45.0% | |
| ACGGGCACGAATGTACTTAA+GGG | + | chr3_2:38501336-38501355 | None:intergenic | 45.0% | |
| AGGTGTATTTGCATAGGGGT+TGG | - | chr3_2:38501375-38501394 | Msa0405010:intron | 45.0% | |
| GTATTTGCATAGGGGTTGGA+AGG | - | chr3_2:38501379-38501398 | Msa0405010:intron | 45.0% | |
| ATTGTCCAAGTGGAAAAGGG+AGG | - | chr3_2:38501910-38501929 | Msa0405010:CDS | 45.0% | |
| ! | AACAACCTCCCTTTTCCACT+TGG | + | chr3_2:38501918-38501937 | None:intergenic | 45.0% |
| TGGAAAAGGGAGGTTGTTGT+CGG | - | chr3_2:38501920-38501939 | Msa0405010:CDS | 45.0% | |
| ! | ATTCATTGTGGCCTTGCTCT+TGG | + | chr3_2:38502391-38502410 | None:intergenic | 45.0% |
| AAGAGCAAGGCCACAATGAA+TGG | - | chr3_2:38502390-38502409 | Msa0405010:intron | 45.0% | |
| GTGGGATTACCAACCTTTGA+GGG | - | chr3_2:38502510-38502529 | Msa0405010:intron | 45.0% | |
| GAGAACTAAGGCTGTAACAG+AGG | - | chr3_2:38503256-38503275 | Msa0405010:intron | 45.0% | |
| ! | CTGTAACAGAGGCTTTTGCA+AGG | - | chr3_2:38503267-38503286 | Msa0405010:intron | 45.0% |
| ! | AGGCTTTTGCAAGGCTTTAC+AGG | - | chr3_2:38503276-38503295 | Msa0405010:intron | 45.0% |
| CTTGATCCAGCAACAACTTG+TGG | - | chr3_2:38503683-38503702 | Msa0405010:intron | 45.0% | |
| TCAAGACCACAAGTTGTTGC+TGG | + | chr3_2:38503692-38503711 | None:intergenic | 45.0% | |
| ! | AGCAACAACTTGTGGTCTTG+AGG | - | chr3_2:38503691-38503710 | Msa0405010:intron | 45.0% |
| TGCGGGCAACATATCTGATA+TGG | - | chr3_2:38503940-38503959 | Msa0405010:intron | 45.0% | |
| !! | CACAGGCTTTAAATCGTCCA+TGG | + | chr3_2:38504842-38504861 | None:intergenic | 45.0% |
| ACAGCAAGAAGATGTGTCAC+AGG | + | chr3_2:38504859-38504878 | None:intergenic | 45.0% | |
| !! | CTTGCTGTTGACATCACTTC+AGG | - | chr3_2:38504871-38504890 | Msa0405010:CDS | 45.0% |
| GTTGACATCACTTCAGGAAG+TGG | - | chr3_2:38504877-38504896 | Msa0405010:intron | 45.0% | |
| GGGATTAAGTTATTCCGCCA+AGG | - | chr3_2:38504898-38504917 | Msa0405010:intron | 45.0% | |
| CCGCCAAGGCATAAATTATC+TGG | - | chr3_2:38504912-38504931 | Msa0405010:intron | 45.0% | |
| CCAACATTCCAACTCATGAC+AGG | + | chr3_2:38504991-38505010 | None:intergenic | 45.0% | |
| ! | CCTGTCATGAGTTGGAATGT+TGG | - | chr3_2:38504988-38505007 | Msa0405010:intron | 45.0% |
| CCTTCACAGATTGGGAACGA+TGG | + | chr3_2:38500970-38500989 | None:intergenic | 50.0% | |
| CCATCGTTCCCAATCTGTGA+AGG | - | chr3_2:38500967-38500986 | Msa0405010:CDS | 50.0% | |
| TGCTTCACTCTCCCTCAAGA+TGG | - | chr3_2:38500995-38501014 | Msa0405010:CDS | 50.0% | |
| CGGGCACGAATGTACTTAAG+GGG | + | chr3_2:38501335-38501354 | None:intergenic | 50.0% | |
| CACGGGCACGAATGTACTTA+AGG | + | chr3_2:38501337-38501356 | None:intergenic | 50.0% | |
| ACAATCAGGCTCAGGTTCAC+GGG | + | chr3_2:38501354-38501373 | None:intergenic | 50.0% | |
| CACAATCAGGCTCAGGTTCA+CGG | + | chr3_2:38501355-38501374 | None:intergenic | 50.0% | |
| TGAACCTGAGCCTGATTGTG+AGG | - | chr3_2:38501355-38501374 | Msa0405010:CDS | 50.0% | |
| TACACCTCACAATCAGGCTC+AGG | + | chr3_2:38501362-38501381 | None:intergenic | 50.0% | |
| AGCGTGAGCAGAATCGTAAG+TGG | + | chr3_2:38501816-38501835 | None:intergenic | 50.0% | |
| AGCCCTTAGCCCACTAATGA+AGG | - | chr3_2:38501854-38501873 | Msa0405010:intron | 50.0% | |
| GGTGGGATTACCAACCTTTG+AGG | - | chr3_2:38502509-38502528 | Msa0405010:intron | 50.0% | |
| GAGTCATTGCCCTCAAAGGT+TGG | + | chr3_2:38502522-38502541 | None:intergenic | 50.0% | |
| GACCGTATCTATAGGTGAGG+TGG | - | chr3_2:38503302-38503321 | Msa0405010:intron | 50.0% | |
| ATCTTGATCCCAGTCTTCCC+TGG | - | chr3_2:38503614-38503633 | Msa0405010:CDS | 50.0% | |
| TCTTGATCCCAGTCTTCCCT+GGG | - | chr3_2:38503615-38503634 | Msa0405010:CDS | 50.0% | |
| AGGCATTCATTAGAGCCTCC+TGG | + | chr3_2:38504439-38504458 | None:intergenic | 50.0% | |
| ATGACAGGCACCAGCCTAAA+AGG | + | chr3_2:38504976-38504995 | None:intergenic | 50.0% | |
| GGAGCAAGCGAAGCTGCAAA+CGG | + | chr3_2:38501160-38501179 | None:intergenic | 55.0% | |
| GGATCTGATGTAGCTGCCCA+GGG | + | chr3_2:38503634-38503653 | None:intergenic | 55.0% | |
| ACGGCGAGATCCGAGACGAT+TGG | + | chr3_2:38501141-38501160 | None:intergenic | 60.0% | |
| ! | ATAGGGGTTGGAAGGGCGCA+AGG | - | chr3_2:38501387-38501406 | Msa0405010:intron | 60.0% |
| ! | TAGGGGTTGGAAGGGCGCAA+GGG | - | chr3_2:38501388-38501407 | Msa0405010:intron | 60.0% |
| GTAGCTGCCCAGGGAAGACT+GGG | + | chr3_2:38503625-38503644 | None:intergenic | 60.0% | |
| TGTAGCTGCCCAGGGAAGAC+TGG | + | chr3_2:38503626-38503645 | None:intergenic | 60.0% | |
| CGGATCTGATGTAGCTGCCC+AGG | + | chr3_2:38503635-38503654 | None:intergenic | 60.0% | |
| GGCTGGTGCCTGTCATGAGT+TGG | - | chr3_2:38504980-38504999 | Msa0405010:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 38500911 | 38505116 | 38500911 | ID=Msa0405010;Name=Msa0405010 |
| chr3_2 | mRNA | 38500911 | 38505116 | 38500911 | ID=Msa0405010-mRNA-1;Parent=Msa0405010;Name=Msa0405010-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0.5|0.36|1|0.8|0.72|11|24|414 |
| chr3_2 | exon | 38500911 | 38501188 | 38500911 | ID=Msa0405010-mRNA-1:exon:7643;Parent=Msa0405010-mRNA-1 |
| chr3_2 | exon | 38501286 | 38501385 | 38501286 | ID=Msa0405010-mRNA-1:exon:7642;Parent=Msa0405010-mRNA-1 |
| chr3_2 | exon | 38501453 | 38501551 | 38501453 | ID=Msa0405010-mRNA-1:exon:7641;Parent=Msa0405010-mRNA-1 |
| chr3_2 | exon | 38501899 | 38501967 | 38501899 | ID=Msa0405010-mRNA-1:exon:7640;Parent=Msa0405010-mRNA-1 |
| chr3_2 | exon | 38502066 | 38502235 | 38502066 | ID=Msa0405010-mRNA-1:exon:7639;Parent=Msa0405010-mRNA-1 |
| chr3_2 | exon | 38502311 | 38502400 | 38502311 | ID=Msa0405010-mRNA-1:exon:7638;Parent=Msa0405010-mRNA-1 |
| chr3_2 | exon | 38503535 | 38503698 | 38503535 | ID=Msa0405010-mRNA-1:exon:7637;Parent=Msa0405010-mRNA-1 |
| chr3_2 | exon | 38504138 | 38504187 | 38504138 | ID=Msa0405010-mRNA-1:exon:7636;Parent=Msa0405010-mRNA-1 |
| chr3_2 | exon | 38504618 | 38504722 | 38504618 | ID=Msa0405010-mRNA-1:exon:7635;Parent=Msa0405010-mRNA-1 |
| chr3_2 | exon | 38504826 | 38504891 | 38504826 | ID=Msa0405010-mRNA-1:exon:7634;Parent=Msa0405010-mRNA-1 |
| chr3_2 | exon | 38505039 | 38505116 | 38505039 | ID=Msa0405010-mRNA-1:exon:7633;Parent=Msa0405010-mRNA-1 |
| chr3_2 | CDS | 38505039 | 38505116 | 38505039 | ID=Msa0405010-mRNA-1:cds;Parent=Msa0405010-mRNA-1 |
| chr3_2 | CDS | 38504826 | 38504891 | 38504826 | ID=Msa0405010-mRNA-1:cds;Parent=Msa0405010-mRNA-1 |
| chr3_2 | CDS | 38504618 | 38504722 | 38504618 | ID=Msa0405010-mRNA-1:cds;Parent=Msa0405010-mRNA-1 |
| chr3_2 | CDS | 38504138 | 38504187 | 38504138 | ID=Msa0405010-mRNA-1:cds;Parent=Msa0405010-mRNA-1 |
| chr3_2 | CDS | 38503535 | 38503698 | 38503535 | ID=Msa0405010-mRNA-1:cds;Parent=Msa0405010-mRNA-1 |
| chr3_2 | CDS | 38502311 | 38502400 | 38502311 | ID=Msa0405010-mRNA-1:cds;Parent=Msa0405010-mRNA-1 |
| chr3_2 | CDS | 38502066 | 38502235 | 38502066 | ID=Msa0405010-mRNA-1:cds;Parent=Msa0405010-mRNA-1 |
| chr3_2 | CDS | 38501899 | 38501967 | 38501899 | ID=Msa0405010-mRNA-1:cds;Parent=Msa0405010-mRNA-1 |
| chr3_2 | CDS | 38501453 | 38501551 | 38501453 | ID=Msa0405010-mRNA-1:cds;Parent=Msa0405010-mRNA-1 |
| chr3_2 | CDS | 38501286 | 38501385 | 38501286 | ID=Msa0405010-mRNA-1:cds;Parent=Msa0405010-mRNA-1 |
| chr3_2 | CDS | 38500935 | 38501188 | 38500935 | ID=Msa0405010-mRNA-1:cds;Parent=Msa0405010-mRNA-1 |
| chr3_2 | three_prime_UTR | 38500911 | 38500934 | 38500911 | ID=Msa0405010-mRNA-1:three_prime_utr;Parent=Msa0405010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
