AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0644140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644140 MtrunA17_Chr4g0039291 65.909 44 14 1 10 53 231 273 6.68e-12 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 95 sgRNAs with CRISPR-Local

Find 604 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACCTATTATTTCCGTAAA+TGG 0.175758 4_3:-47681920 Msa0644140:three_prime_UTR
GAATCTCGAAAGGGTGTATT+AGG 0.180905 4_3:-47683482 Msa0644140:CDS
TTTAATGTAGAGATAAATTT+TGG 0.207158 4_3:+47683387 None:intergenic
ATCCAACACAATGAAGATTA+TGG 0.240565 4_3:-47677890 Msa0644140:three_prime_UTR
TAGCAGAACCCATTTGAAAT+TGG 0.276955 4_3:-47683220 Msa0644140:three_prime_UTR
GTAAGATAAGTTCACGATTT+CGG 0.286806 4_3:+47688837 None:intergenic
TTCTTTGCCAGGTTGCTCTA+TGG 0.296320 4_3:-47685878 Msa0644140:intron
GGCGGTCAGAAATGGAGTTT+TGG 0.298315 4_3:+47688801 None:intergenic
GCAATGGATATCGTTAAGTT+TGG 0.316460 4_3:-47680186 Msa0644140:three_prime_UTR
CAGAGTAGAAGATGCCTATT+AGG 0.339167 4_3:+47683446 None:intergenic
GAACACATAAATGTACTTAT+AGG 0.340835 4_3:-47683066 Msa0644140:three_prime_UTR
GCTCCATTTACGGAAATAAT+AGG 0.342954 4_3:+47681917 None:intergenic
CATCAAAAGCTCTTTGAACT+TGG 0.355339 4_3:-47678602 Msa0644140:three_prime_UTR
CATTAGCTCTTTCTCATCAA+TGG 0.358749 4_3:+47682788 None:intergenic
AGGAAGAGATGCTCCATTTA+CGG 0.360970 4_3:+47681907 None:intergenic
CAGGCCAGATAATGCATTCC+AGG 0.367166 4_3:-47685992 Msa0644140:intron
GAGGTGTAGATTAGAATTAG+TGG 0.367237 4_3:-47682987 Msa0644140:three_prime_UTR
TTAATAATCAGCTGATTAGA+TGG 0.367288 4_3:+47677630 None:intergenic
TCAAATACACCAATTTCAAA+TGG 0.374400 4_3:+47683211 None:intergenic
CAAACCTGGAATGCATTATC+TGG 0.375066 4_3:+47685988 None:intergenic
GGAGAACGTTGGTACCTAAT+AGG 0.382619 4_3:-47683460 Msa0644140:CDS
ATGGAGCATCTCTTCCTGTT+TGG 0.386995 4_3:-47681901 Msa0644140:three_prime_UTR
GTTGTGTCATTGTTGCTAAA+GGG 0.400417 4_3:+47682814 None:intergenic
AGTTGTGTCATTGTTGCTAA+AGG 0.406408 4_3:+47682813 None:intergenic
TCCCATAATCTTCATTGTGT+TGG 0.409474 4_3:+47677888 None:intergenic
CTCATCGAGGCGGTCAGAAA+TGG 0.409584 4_3:+47688793 None:intergenic
GGTTATTCAGAATGGGGAAT+AGG 0.422108 4_3:+47677667 None:intergenic
CATTGATGAGAAAGAGCTAA+TGG 0.423043 4_3:-47682787 Msa0644140:three_prime_UTR
ATGGAGAAATTTATCAATGA+AGG 0.427599 4_3:-47682768 Msa0644140:intron
CAAATACACCAATTTCAAAT+GGG 0.437469 4_3:+47683212 None:intergenic
TCCAACACAATGAAGATTAT+GGG 0.437849 4_3:-47677889 Msa0644140:three_prime_UTR
TTTCTCCTCCGATTGAAACC+TGG 0.446906 4_3:-47688618 Msa0644140:five_prime_UTR
TATCGTTAAGTTTGGAGAGT+TGG 0.456577 4_3:-47680178 Msa0644140:three_prime_UTR
AAGGAAGCACAATGGGATCA+TGG 0.468569 4_3:-47677987 Msa0644140:three_prime_UTR
TTGGCATTCCTTACCAAGGT+TGG 0.475281 4_3:+47683406 None:intergenic
AATCTCGAAAGGGTGTATTA+GGG 0.475566 4_3:-47683481 Msa0644140:CDS
GCAGGAAAAGGAAGCACAAT+GGG 0.481641 4_3:-47677994 Msa0644140:intron
GGCATCTTCTACTCTGCAGC+TGG 0.483704 4_3:-47683439 Msa0644140:CDS
GAACATCAAAATATAGAAAG+AGG 0.484535 4_3:+47688702 None:intergenic
TTTCAGTCTGTTACCATCGC+TGG 0.485878 4_3:-47688669 Msa0644140:five_prime_UTR
TTCTCCTCCGATTGAAACCT+GGG 0.485915 4_3:-47688617 Msa0644140:five_prime_UTR
CTTTAGTGCGACAAAACAAA+GGG 0.487678 4_3:+47688932 None:intergenic
AAAATTGATCTTTCAAACAA+TGG 0.489807 4_3:+47682878 None:intergenic
TATGATTACCTTGATTATGT+AGG 0.491010 4_3:+47681869 None:intergenic
GTAGGAGTTGATCTCCAAAC+AGG 0.497937 4_3:+47681887 None:intergenic
TCTCTGCATGTGGAGGTCCC+AGG 0.501168 4_3:+47688600 None:intergenic
AGGAAGCACAATGGGATCAT+GGG 0.501840 4_3:-47677986 Msa0644140:three_prime_UTR
ATCAAAAGCTCTTTGAACTT+GGG 0.501854 4_3:-47678601 Msa0644140:intron
TTCAGAATGGGGAATAGGTC+CGG 0.502512 4_3:+47677672 None:intergenic
ACTCATCAGTGACGGTGTCT+AGG 0.516021 4_3:+47688756 None:intergenic
GTGTGGCTGCTAGGGTATGA+AGG 0.518262 4_3:+47688966 None:intergenic
AATAAAATAAATTCTGCTAC+CGG 0.521170 4_3:-47677691 Msa0644140:three_prime_UTR
TGGAGGTCCCAGGTTTCAAT+CGG 0.529160 4_3:+47688610 None:intergenic
TTGTGTCATTGTTGCTAAAG+GGG 0.531539 4_3:+47682815 None:intergenic
TGTCGCACTAAAGCCTCGGT+TGG 0.534689 4_3:-47688922 Msa0644140:five_prime_UTR
GATCAACTCCTACATAATCA+AGG 0.538359 4_3:-47681877 Msa0644140:intron
AGAATGACAAGGAGAGAAGA+TGG 0.538836 4_3:-47681942 Msa0644140:three_prime_UTR
TCAGACAACCAACCTTGGTA+AGG 0.561964 4_3:-47683414 Msa0644140:CDS
AGTAATGATGATTCAAACAA+AGG 0.563671 4_3:+47683324 None:intergenic
TTCAAGATTTATGTAGCATG+AGG 0.566238 4_3:+47683247 None:intergenic
GAAGTATAGATCTGAAAGAG+AGG 0.570431 4_3:+47688875 None:intergenic
GCTTTAGTGCGACAAAACAA+AGG 0.571669 4_3:+47688931 None:intergenic
GCAGATCTCATCTCTGCATG+TGG 0.575980 4_3:+47688590 None:intergenic
TCAAGTGGAAAGAAATGGAA+AGG 0.576861 4_3:-47677932 Msa0644140:three_prime_UTR
GATCTCATCTCTGCATGTGG+AGG 0.577376 4_3:+47688593 None:intergenic
TCACGATTTCGGAAAACGAA+TGG 0.577886 4_3:+47688848 None:intergenic
ATGCATTATCTGGCCTGTTG+TGG 0.586687 4_3:+47685998 None:intergenic
TCATATTTATAATACAACAT+AGG 0.588298 4_3:-47677743 Msa0644140:three_prime_UTR
TAGGCTATAGATACAGCAGC+AGG 0.589838 4_3:-47677724 Msa0644140:three_prime_UTR
TTTCAAGGTTATTCAGAATG+GGG 0.592744 4_3:+47677661 None:intergenic
TGGAATCAGACAACCAACCT+TGG 0.592819 4_3:-47683419 Msa0644140:CDS
TCGTGTGCAGGAATCTCGAA+AGG 0.593578 4_3:-47683492 Msa0644140:intron
CTTGCACTGATTCCATGTGG+TGG 0.594128 4_3:+47686039 None:intergenic
CTGCTAGGGTATGAAGGAGG+AGG 0.595680 4_3:+47688972 None:intergenic
CACCACATGGAATCAGTGCA+AGG 0.603826 4_3:-47686038 Msa0644140:CDS
TTTCTTTGCTGATTATACTG+AGG 0.608431 4_3:-47678627 Msa0644140:three_prime_UTR
GACGGTGTCTAGGTTTCACA+TGG 0.619031 4_3:+47688766 None:intergenic
TTACCATCGCTGGAGCTCGA+AGG 0.619654 4_3:-47688659 Msa0644140:five_prime_UTR
CGTGTGCAGGAATCTCGAAA+GGG 0.620127 4_3:-47683491 Msa0644140:intron
TTCTCTGATGACAAATCATG+TGG 0.626227 4_3:+47683178 None:intergenic
ATGCCTTCGAGCTCCAGCGA+TGG 0.636343 4_3:+47688656 None:intergenic
TGCAGAGATGAGATCTGCAA+GGG 0.639078 4_3:-47688585 Msa0644140:exon
TGCAGGAAAAGGAAGCACAA+TGG 0.641704 4_3:-47677995 Msa0644140:intron
ATGCAGAGATGAGATCTGCA+AGG 0.642863 4_3:-47688586 Msa0644140:exon
GTTAGTCTCGCAGCCAACCG+AGG 0.642914 4_3:+47688909 None:intergenic
AGGTCCCAGGTTTCAATCGG+AGG 0.645548 4_3:+47688613 None:intergenic
ACCACATGGAATCAGTGCAA+GGG 0.646034 4_3:-47686037 Msa0644140:CDS
AATTAAATACTCATCAGTGA+CGG 0.677242 4_3:+47688748 None:intergenic
GCCCTTGCACTGATTCCATG+TGG 0.691849 4_3:+47686036 None:intergenic
TGGCTGCTAGGGTATGAAGG+AGG 0.709874 4_3:+47688969 None:intergenic
AAAGATAATGAAGAATGACA+AGG 0.719758 4_3:-47681953 Msa0644140:three_prime_UTR
ACATGGAGTACTCATCGAGG+CGG 0.726163 4_3:+47688783 None:intergenic
TTTAGTGCGACAAAACAAAG+GGG 0.749693 4_3:+47688933 None:intergenic
TTCACATGGAGTACTCATCG+AGG 0.750741 4_3:+47688780 None:intergenic
GGGTGTATTAGGGAGAACGT+TGG 0.759209 4_3:-47683471 Msa0644140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGTAATTAAAAAGAAAAT+TGG + chr4_3:47678233-47678252 None:intergenic 10.0%
!!! TTTCTTTTTAATTACAAAAT+TGG - chr4_3:47678235-47678254 Msa0644140:intron 10.0%
!! TTTATGTTATTATAGATAAT+AGG - chr4_3:47679597-47679616 Msa0644140:intron 10.0%
!!! AAACTAAATTTTTAATATGA+TGG + chr4_3:47679756-47679775 None:intergenic 10.0%
!! AACAATTTATTTATAAATGT+TGG + chr4_3:47681917-47681936 None:intergenic 10.0%
!!! TTTTGATACTTAATTTAATA+TGG - chr4_3:47682096-47682115 Msa0644140:intron 10.0%
!!! TATAGATAATATTTCTAATT+AGG - chr4_3:47684123-47684142 Msa0644140:intron 10.0%
!! AATTTAAACACATTATAAAT+AGG + chr4_3:47686318-47686337 None:intergenic 10.0%
!!! TAATGTGTTTAAATTTATTT+TGG - chr4_3:47686361-47686380 Msa0644140:intron 10.0%
!!! TTTTTGTTTAAACAAATTTT+TGG + chr4_3:47687567-47687586 None:intergenic 10.0%
!! ATAAATTACAATAATCAATG+TGG + chr4_3:47678750-47678769 None:intergenic 15.0%
!! TATGAATATATGAAAAGTAA+AGG + chr4_3:47679512-47679531 None:intergenic 15.0%
!!! TGCTTTTTTAATTAACAAAA+AGG - chr4_3:47679629-47679648 Msa0644140:intron 15.0%
!! AAAAGTTATTCAAATAATCA+TGG - chr4_3:47679788-47679807 Msa0644140:intron 15.0%
!!! TCAAATCTAAAATTTCATTT+TGG - chr4_3:47679974-47679993 Msa0644140:intron 15.0%
!! ATACTTAATTTAATATGGTA+TGG - chr4_3:47682101-47682120 Msa0644140:intron 15.0%
!!! ATTTACTTTGAAGATATAAA+AGG + chr4_3:47682430-47682449 None:intergenic 15.0%
!!! TAAAATAAAAGTGTTATGTT+TGG - chr4_3:47682471-47682490 Msa0644140:intron 15.0%
!! ATATTAGTTATAATTATTCC+TGG - chr4_3:47682530-47682549 Msa0644140:intron 15.0%
!! AACATTCTCTTAAAAATATT+AGG - chr4_3:47682762-47682781 Msa0644140:intron 15.0%
!! AAAATAAAAAAGACAAGAAA+TGG + chr4_3:47682968-47682987 None:intergenic 15.0%
!!! TTTAATGTAGAGATAAATTT+TGG + chr4_3:47683225-47683244 None:intergenic 15.0%
!!! GTATTTTATATTGCTTTATA+TGG + chr4_3:47683682-47683701 None:intergenic 15.0%
!! TATAACTTCTGTAATTAAAA+CGG + chr4_3:47683878-47683897 None:intergenic 15.0%
!! GAAAATTAATGTAACAATAT+AGG - chr4_3:47684623-47684642 Msa0644140:intron 15.0%
!! ACAATAACATTCAATAAAAT+TGG + chr4_3:47684798-47684817 None:intergenic 15.0%
!!! AGTTCAAAATTTATTTTGAA+AGG + chr4_3:47684968-47684987 None:intergenic 15.0%
!!! AACTTATTTTGTCTAAAATA+TGG - chr4_3:47685519-47685538 Msa0644140:intron 15.0%
!!! TAATGTGTTTAAATTCATTT+TGG - chr4_3:47686323-47686342 Msa0644140:intron 15.0%
!! AGAAAAAAAAATGTTTCAAA+AGG + chr4_3:47686849-47686868 None:intergenic 15.0%
!!! TATTTTTTTTGGAAATGTTA+AGG + chr4_3:47687634-47687653 None:intergenic 15.0%
!!! TTTCAAGATTTAAAATTTCT+AGG - chr4_3:47687853-47687872 Msa0644140:intron 15.0%
!!! TTCAAGATTTAAAATTTCTA+GGG - chr4_3:47687854-47687873 Msa0644140:intron 15.0%
!! TCATATTTATAATACAACAT+AGG - chr4_3:47688866-47688885 Msa0644140:five_prime_UTR 15.0%
!!! TTTTTTTAAGACACACAAAA+TGG + chr4_3:47678123-47678142 None:intergenic 20.0%
!! TTCCTTTCTATTAGTTAATA+CGG - chr4_3:47678330-47678349 Msa0644140:intron 20.0%
!! TGAAATGAATTATTAGATTC+TGG - chr4_3:47678486-47678505 Msa0644140:intron 20.0%
!!! AAACAAAAAGCATAAACAAT+AGG + chr4_3:47678980-47678999 None:intergenic 20.0%
!! ATGAATTTAATAAATAGCAC+TGG - chr4_3:47679310-47679329 Msa0644140:intron 20.0%
!!! ATGATGGAAAATAACTTAAA+AGG + chr4_3:47679740-47679759 None:intergenic 20.0%
!! TTTATACATAAATGAGTCTT+GGG + chr4_3:47679912-47679931 None:intergenic 20.0%
!! CATATTAGAAAGTAAAATGT+CGG + chr4_3:47680287-47680306 None:intergenic 20.0%
!! TTTAGTTGAAATAAAAACAG+TGG - chr4_3:47680445-47680464 Msa0644140:intron 20.0%
!! GATAAAAGACTAATGTATTA+AGG + chr4_3:47680472-47680491 None:intergenic 20.0%
!!! TTTTTATCCTTTCATGTAAT+AGG - chr4_3:47680966-47680985 Msa0644140:intron 20.0%
!! ATACTTAACAAATTAATCTG+TGG - chr4_3:47681035-47681054 Msa0644140:intron 20.0%
!! TTACTATAGAGTTAGTTATA+GGG + chr4_3:47681104-47681123 None:intergenic 20.0%
!! TTTACTATAGAGTTAGTTAT+AGG + chr4_3:47681105-47681124 None:intergenic 20.0%
!!! AAAAAAGATTCTTTCTTTTG+TGG - chr4_3:47681144-47681163 Msa0644140:intron 20.0%
!! AAAGGTTTCAAAGAAAAATT+GGG + chr4_3:47681195-47681214 None:intergenic 20.0%
!! TAAAGGTTTCAAAGAAAAAT+TGG + chr4_3:47681196-47681215 None:intergenic 20.0%
!! AGAAATTAGAATAAGGATAA+AGG + chr4_3:47681213-47681232 None:intergenic 20.0%
!! TATCCTTATTCTAATTTCTT+TGG - chr4_3:47681214-47681233 Msa0644140:intron 20.0%
!! TATCCAAAGAAATTAGAATA+AGG + chr4_3:47681220-47681239 None:intergenic 20.0%
!!! GAAATATGAAGTTCTAATTT+TGG - chr4_3:47681311-47681330 Msa0644140:intron 20.0%
!! TAAAATAAATGTCAAACAGA+AGG + chr4_3:47681448-47681467 None:intergenic 20.0%
!!! TTCTGTTTGACATTTATTTT+AGG - chr4_3:47681447-47681466 Msa0644140:intron 20.0%
!!! ATTTTAGGTTATGAATAAGT+TGG - chr4_3:47681462-47681481 Msa0644140:intron 20.0%
!!! TTCTATTTCTTGACTTTTAT+TGG - chr4_3:47681545-47681564 Msa0644140:intron 20.0%
!!! TCTATTTCTTGACTTTTATT+GGG - chr4_3:47681546-47681565 Msa0644140:intron 20.0%
!!! TAAGCAATGGATTAAAAAAA+TGG - chr4_3:47681589-47681608 Msa0644140:intron 20.0%
!!! AATAACATTTCCAATTTTCT+TGG + chr4_3:47681717-47681736 None:intergenic 20.0%
!! AAATCATACAAAAGTTATTG+AGG + chr4_3:47681775-47681794 None:intergenic 20.0%
!!! AAGAAATTAAAGTTTAAAGC+TGG + chr4_3:47681820-47681839 None:intergenic 20.0%
!! GTTTGAATTTCACTTTAATT+AGG - chr4_3:47681842-47681861 Msa0644140:intron 20.0%
!! ATTTATTTATAAATGTTGGC+AGG + chr4_3:47681913-47681932 None:intergenic 20.0%
!!! TAATTTTTTTCCTCTAAAGT+TGG - chr4_3:47682060-47682079 Msa0644140:intron 20.0%
!!! TTAAACCCTTTTTTTCTATT+AGG + chr4_3:47682127-47682146 None:intergenic 20.0%
!! TTCTTTAATGATACTTTAGT+GGG - chr4_3:47682155-47682174 Msa0644140:intron 20.0%
!! ACAAGTCATTAGTAAATATA+AGG - chr4_3:47682256-47682275 Msa0644140:intron 20.0%
!! TTTCACATGTATAAAAACAT+AGG - chr4_3:47682283-47682302 Msa0644140:intron 20.0%
!! AATGAATTAGTAAAGTAACA+AGG + chr4_3:47682625-47682644 None:intergenic 20.0%
!! AATGTTAAAAAATAGTGAGA+TGG + chr4_3:47682727-47682746 None:intergenic 20.0%
!!! TCCTTTTAATGTTTGTAATT+GGG + chr4_3:47682803-47682822 None:intergenic 20.0%
!!! ATCCTTTTAATGTTTGTAAT+TGG + chr4_3:47682804-47682823 None:intergenic 20.0%
!! CTCTACATTAAAAAGTTTAA+TGG - chr4_3:47683233-47683252 Msa0644140:three_prime_UTR 20.0%
!! AAAATTGATCTTTCAAACAA+TGG + chr4_3:47683734-47683753 None:intergenic 20.0%
!!! TGAAAGATCAATTTTCTAAT+TGG - chr4_3:47683739-47683758 Msa0644140:intron 20.0%
!!! GTTTTAATTACAGAAGTTAT+AGG - chr4_3:47683877-47683896 Msa0644140:intron 20.0%
!! TACTAAAAAATATACAGTGT+AGG + chr4_3:47683977-47683996 None:intergenic 20.0%
!! ACATGATTTCATCAATTAAA+AGG + chr4_3:47684197-47684216 None:intergenic 20.0%
!! AATTAATGTAACAATATAGG+AGG - chr4_3:47684626-47684645 Msa0644140:intron 20.0%
!! ATTCAATAAAATTGGACAAA+AGG + chr4_3:47684790-47684809 None:intergenic 20.0%
!! TATCATTATGAAGTATGAAA+CGG + chr4_3:47685247-47685266 None:intergenic 20.0%
!! ATTACTTCTGTCAAATTATT+TGG - chr4_3:47685417-47685436 Msa0644140:intron 20.0%
!!! TTTTAGACAAAATAAGTTTG+AGG + chr4_3:47685517-47685536 None:intergenic 20.0%
!! TTAGTTCAAAAATATGATGT+AGG - chr4_3:47685663-47685682 Msa0644140:intron 20.0%
!! TAGTTCAAAAATATGATGTA+GGG - chr4_3:47685664-47685683 Msa0644140:intron 20.0%
!!! ATTTCAAAATCTTACTGTTT+TGG + chr4_3:47685691-47685710 None:intergenic 20.0%
!!! AAACAGTAAGATTTTGAAAT+TGG - chr4_3:47685691-47685710 Msa0644140:intron 20.0%
!!! AACAGTAAGATTTTGAAATT+GGG - chr4_3:47685692-47685711 Msa0644140:intron 20.0%
!! TATTTAACCAACCAATATTA+CGG + chr4_3:47685766-47685785 None:intergenic 20.0%
!!! ACTAACTTTTTTTGTGTAAT+TGG - chr4_3:47685862-47685881 Msa0644140:CDS 20.0%
!! AATCAAAAATGAAGTAATGA+AGG + chr4_3:47686094-47686113 None:intergenic 20.0%
!!! TTCATTACTTCATTTTTGAT+TGG - chr4_3:47686093-47686112 Msa0644140:intron 20.0%
!!! TTTGTTTTGTAATTTAGCAA+TGG - chr4_3:47686407-47686426 Msa0644140:intron 20.0%
!!! TACAACAAAAAAAGAAGTAT+TGG + chr4_3:47686530-47686549 None:intergenic 20.0%
!! TAACTAATTCATGATAGAAA+AGG - chr4_3:47686559-47686578 Msa0644140:intron 20.0%
!!! TCATTACTTTTTCTTACTAA+TGG + chr4_3:47686596-47686615 None:intergenic 20.0%
!!! AAACAACATTCATTTTGAAA+TGG + chr4_3:47686629-47686648 None:intergenic 20.0%
!! AATTCTAAGTGTCATATTTA+CGG - chr4_3:47686953-47686972 Msa0644140:intron 20.0%
!! TTTAGAAAAATTAGGACTTT+AGG + chr4_3:47686984-47687003 None:intergenic 20.0%
!!! ATAGGAGTTTTAGAAAAATT+AGG + chr4_3:47686992-47687011 None:intergenic 20.0%
!!! AGTTTTGAAGTTAAAAAGAT+AGG + chr4_3:47687010-47687029 None:intergenic 20.0%
!! CTTGCAATTTATACATAAAT+TGG + chr4_3:47687076-47687095 None:intergenic 20.0%
!!! TTGTTTAAACAAATTTTTGG+CGG + chr4_3:47687564-47687583 None:intergenic 20.0%
!! ATTTCCAAAAAAAATACCTA+TGG - chr4_3:47687638-47687657 Msa0644140:intron 20.0%
!!! TTTTTTGTTTTTCTAGATCT+AGG + chr4_3:47687665-47687684 None:intergenic 20.0%
!! AAGATATTATCATACAAAGT+TGG + chr4_3:47688139-47688158 None:intergenic 20.0%
!!! AACTTTTGTAAGATTTTAGT+GGG - chr4_3:47688189-47688208 Msa0644140:intron 20.0%
!! AAGAAATTATCATGTTAATC+TGG + chr4_3:47688221-47688240 None:intergenic 20.0%
!! CAGAAATTAAAATTTACAGT+TGG + chr4_3:47688353-47688372 None:intergenic 20.0%
!!! CAACTGTAAATTTTAATTTC+TGG - chr4_3:47688351-47688370 Msa0644140:intron 20.0%
!!! TATTATTTTTACATATGCCA+AGG + chr4_3:47688495-47688514 None:intergenic 20.0%
!! GTAAAAATAATAGAATGAAG+TGG - chr4_3:47688503-47688522 Msa0644140:intron 20.0%
!! AATAAAATAAATTCTGCTAC+CGG - chr4_3:47688918-47688937 Msa0644140:five_prime_UTR 20.0%
! AATTAAATACTCATCAGTGA+CGG + chr4_3:47677864-47677883 None:intergenic 25.0%
! GAACATCAAAATATAGAAAG+AGG + chr4_3:47677910-47677929 None:intergenic 25.0%
! TTTAAAAACAAGACAGAGAA+AGG + chr4_3:47678206-47678225 None:intergenic 25.0%
! TACATCACTAGAATATGAAA+TGG + chr4_3:47678280-47678299 None:intergenic 25.0%
! AAATGCTAAATCACAGAAAT+AGG + chr4_3:47678379-47678398 None:intergenic 25.0%
!! TTTCTGTGATTTAGCATTTT+TGG - chr4_3:47678380-47678399 Msa0644140:intron 25.0%
!! TCTTCTCAATATGTTTCTAA+TGG - chr4_3:47678455-47678474 Msa0644140:intron 25.0%
! TACTGTAGTATTAATTAGAG+TGG - chr4_3:47678912-47678931 Msa0644140:intron 25.0%
!!! TGGAAACTTAATTTGTGAAT+GGG + chr4_3:47679135-47679154 None:intergenic 25.0%
!!! TTGGAAACTTAATTTGTGAA+TGG + chr4_3:47679136-47679155 None:intergenic 25.0%
!! AATTCATAGCTACATTGTTT+TGG + chr4_3:47679297-47679316 None:intergenic 25.0%
!! ATAGTGATTGTAATACCTTT+TGG + chr4_3:47679364-47679383 None:intergenic 25.0%
! TATTACAATCACTATCTGAT+TGG - chr4_3:47679369-47679388 Msa0644140:intron 25.0%
! GAATATATGAAAAGTAAAGG+TGG + chr4_3:47679509-47679528 None:intergenic 25.0%
! GTTTATACATAAATGAGTCT+TGG + chr4_3:47679913-47679932 None:intergenic 25.0%
!!! ATTTCATTTTGGTGATAGAT+TGG - chr4_3:47679985-47680004 Msa0644140:intron 25.0%
!!! TGATAGATTGGACTTTTTTT+TGG - chr4_3:47679997-47680016 Msa0644140:intron 25.0%
! ATCTAAGCTTCTAAATATGT+TGG - chr4_3:47680031-47680050 Msa0644140:intron 25.0%
! AATTACACAAACAAAGTCTT+AGG + chr4_3:47680089-47680108 None:intergenic 25.0%
!! TCTAGAATGAAATAACACAA+AGG + chr4_3:47680348-47680367 None:intergenic 25.0%
!! TAATGTTAATTTTCTTTGCC+AGG - chr4_3:47680720-47680739 Msa0644140:intron 25.0%
! CAACAACAAACTAAAAAGAA+AGG + chr4_3:47680832-47680851 None:intergenic 25.0%
!!! CATGTACTGTTTTTTAATTC+AGG + chr4_3:47681002-47681021 None:intergenic 25.0%
! CTGAATTAAAAAACAGTACA+TGG - chr4_3:47681000-47681019 Msa0644140:intron 25.0%
! TTTCATACTTAAATTCCAAG+AGG + chr4_3:47681295-47681314 None:intergenic 25.0%
! AGAAAGAAAACCACTTAAAA+CGG + chr4_3:47681663-47681682 None:intergenic 25.0%
! GCATTAAATTCCAAGAAAAT+TGG - chr4_3:47681704-47681723 Msa0644140:intron 25.0%
! AAAAGTTATTGAGGTTTCTA+AGG + chr4_3:47681766-47681785 None:intergenic 25.0%
!! ATGTTCCTTTTTGTTGATAT+TGG - chr4_3:47681879-47681898 Msa0644140:three_prime_UTR 25.0%
! CAATTCCAATATCAACAAAA+AGG + chr4_3:47681887-47681906 None:intergenic 25.0%
!!! TGCATCTTACATTTTTTTCT+TGG - chr4_3:47681998-47682017 Msa0644140:intron 25.0%
! AAAAATCTTTCCAACTTTAG+AGG + chr4_3:47682073-47682092 None:intergenic 25.0%
! TATGGCCTAATAGAAAAAAA+GGG - chr4_3:47682119-47682138 Msa0644140:intron 25.0%
! GAAAAAAAGGGTTTAAAGAA+AGG - chr4_3:47682131-47682150 Msa0644140:intron 25.0%
! CTTCTTTAATGATACTTTAG+TGG - chr4_3:47682154-47682173 Msa0644140:intron 25.0%
! AAATCTAAGGGAATAAAGAA+AGG - chr4_3:47682185-47682204 Msa0644140:intron 25.0%
!!! CTTAATCACTTTTTCTCAAT+TGG - chr4_3:47682320-47682339 Msa0644140:intron 25.0%
!! TATTCCTGGAGTATTATATT+AGG - chr4_3:47682544-47682563 Msa0644140:intron 25.0%
!!! TGAAAGTAGTTTTGATAGAA+GGG + chr4_3:47682658-47682677 None:intergenic 25.0%
! ACCCAATTACAAACATTAAA+AGG - chr4_3:47682799-47682818 Msa0644140:three_prime_UTR 25.0%
! AGAAAAATACACAAACCTAT+TGG + chr4_3:47682906-47682925 None:intergenic 25.0%
! TAAATTAAATTATCGTGTGC+AGG - chr4_3:47683105-47683124 Msa0644140:three_prime_UTR 25.0%
! AGTAATGATGATTCAAACAA+AGG + chr4_3:47683288-47683307 None:intergenic 25.0%
! CAAATACACCAATTTCAAAT+GGG + chr4_3:47683400-47683419 None:intergenic 25.0%
! TCAAATACACCAATTTCAAA+TGG + chr4_3:47683401-47683420 None:intergenic 25.0%
! GAACACATAAATGTACTTAT+AGG - chr4_3:47683543-47683562 Msa0644140:intron 25.0%
!! TTGCATTTTTCCAAATTCAT+GGG + chr4_3:47683601-47683620 None:intergenic 25.0%
!! TTTGCATTTTTCCAAATTCA+TGG + chr4_3:47683602-47683621 None:intergenic 25.0%
! ATGGAGAAATTTATCAATGA+AGG - chr4_3:47683841-47683860 Msa0644140:intron 25.0%
! AATTTATCAATGAAGGTTAG+TGG - chr4_3:47683848-47683867 Msa0644140:intron 25.0%
! GTAGCAAGAATAATGTAATT+TGG - chr4_3:47684054-47684073 Msa0644140:intron 25.0%
!!! TTATTTTAGTGTTCTTCACA+AGG + chr4_3:47684092-47684111 None:intergenic 25.0%
!!! GGTAAAAGTATTATGTTCTT+CGG + chr4_3:47684454-47684473 None:intergenic 25.0%
! AAAGATAATGAAGAATGACA+AGG - chr4_3:47684656-47684675 Msa0644140:intron 25.0%
! TATGATTACCTTGATTATGT+AGG + chr4_3:47684743-47684762 None:intergenic 25.0%
! AGGTTAACATATGATATGTT+GGG + chr4_3:47684770-47684789 None:intergenic 25.0%
! AAGGTTAACATATGATATGT+TGG + chr4_3:47684771-47684790 None:intergenic 25.0%
! AAGTTTAACAAAGAGTTCTA+CGG + chr4_3:47684875-47684894 None:intergenic 25.0%
!! GCAATTATTTAACTTTGCAA+GGG + chr4_3:47685157-47685176 None:intergenic 25.0%
!! TGCAATTATTTAACTTTGCA+AGG + chr4_3:47685158-47685177 None:intergenic 25.0%
!!! GATATGCGTTTTTAATTTGT+TGG - chr4_3:47685263-47685282 Msa0644140:intron 25.0%
! CAAATTATTTGGTTATCTCA+TGG - chr4_3:47685428-47685447 Msa0644140:intron 25.0%
!!! AGAAGATAGTTTTGATAGAA+AGG + chr4_3:47685455-47685474 None:intergenic 25.0%
!! TACACTATTAATTGCAGTTT+TGG - chr4_3:47685486-47685505 Msa0644140:intron 25.0%
!!! TTTTGGCTTAATTGTAGTTT+TGG + chr4_3:47685721-47685740 None:intergenic 25.0%
! ACAATTAAGCCAAAACTAAT+AGG - chr4_3:47685726-47685745 Msa0644140:intron 25.0%
!!! CGATTATAACCTATTAGTTT+TGG + chr4_3:47685738-47685757 None:intergenic 25.0%
!! CTCTAAGAAAAAGGTTAAAT+TGG - chr4_3:47685803-47685822 Msa0644140:intron 25.0%
! ATATTAAAATGACATTTGCG+AGG - chr4_3:47685834-47685853 Msa0644140:CDS 25.0%
! GAAATTCATAAAGACAAATC+TGG - chr4_3:47685983-47686002 Msa0644140:intron 25.0%
!! TTAAGCTTATGTTTTCTTCA+TGG - chr4_3:47686049-47686068 Msa0644140:intron 25.0%
! TTATGGCCAATTCATAAATA+CGG + chr4_3:47686119-47686138 None:intergenic 25.0%
! TATTTATGAATTGGCCATAA+AGG - chr4_3:47686119-47686138 Msa0644140:intron 25.0%
!! AGTATCAAACTTTTCCTTTA+TGG + chr4_3:47686136-47686155 None:intergenic 25.0%
!!! GACATTGTTTTTTTGAAGAA+AGG - chr4_3:47686195-47686214 Msa0644140:intron 25.0%
!!! AACATTCATTTTGAAATGGA+GGG + chr4_3:47686625-47686644 None:intergenic 25.0%
!! TTCAAAATGAATGTTGTTTG+AGG - chr4_3:47686630-47686649 Msa0644140:intron 25.0%
! AAATGCAATGATTAGAGTAA+AGG - chr4_3:47686670-47686689 Msa0644140:intron 25.0%
! AATGCAATGATTAGAGTAAA+GGG - chr4_3:47686671-47686690 Msa0644140:intron 25.0%
!! CAAAGCAAAAGTAATGTTTT+GGG - chr4_3:47686755-47686774 Msa0644140:intron 25.0%
! ATCTTATGATTTACATGAGT+TGG - chr4_3:47687038-47687057 Msa0644140:intron 25.0%
! TACATGTCCAAAATAGTAAT+GGG + chr4_3:47687103-47687122 None:intergenic 25.0%
! ATACATGTCCAAAATAGTAA+TGG + chr4_3:47687104-47687123 None:intergenic 25.0%
! TGCAAAAAGTAAAGAAAACA+CGG - chr4_3:47687164-47687183 Msa0644140:intron 25.0%
!!! TACTGTGTTTTGTTTTTTTG+AGG - chr4_3:47687790-47687809 Msa0644140:intron 25.0%
!! CAACTTTTGTAAGATTTTAG+TGG - chr4_3:47688188-47688207 Msa0644140:intron 25.0%
! CTTTAAATCATACATAAAGC+TGG + chr4_3:47688433-47688452 None:intergenic 25.0%
!! TTCTGCTATAGATCATTTTA+TGG + chr4_3:47688460-47688479 None:intergenic 25.0%
! AAAAATCAAGTGGAAAGAAA+TGG - chr4_3:47688672-47688691 Msa0644140:five_prime_UTR 25.0%
!!! GTGTGTAATTTTTTTTTTCC+AGG - chr4_3:47688792-47688811 Msa0644140:five_prime_UTR 25.0%
!! TTCTTTTGTACAATTTTTCC+TGG + chr4_3:47688813-47688832 None:intergenic 25.0%
!!! TTTTCAAGGTTATTCAGAAT+GGG + chr4_3:47688952-47688971 None:intergenic 25.0%
!!! TTTTTCAAGGTTATTCAGAA+TGG + chr4_3:47688953-47688972 None:intergenic 25.0%
!!! TAGATGGTTTTAGTTTTTCA+AGG + chr4_3:47688966-47688985 None:intergenic 25.0%
! TTAATAATCAGCTGATTAGA+TGG + chr4_3:47688982-47689001 None:intergenic 25.0%
GTAAGATAAGTTCACGATTT+CGG + chr4_3:47677775-47677794 None:intergenic 30.0%
CTAGAATATGAAATGGAGTT+GGG + chr4_3:47678273-47678292 None:intergenic 30.0%
ACTAGAATATGAAATGGAGT+TGG + chr4_3:47678274-47678293 None:intergenic 30.0%
GACCGTATTAACTAATAGAA+AGG + chr4_3:47678335-47678354 None:intergenic 30.0%
TATTAGTTAATACGGTCTTG+AGG - chr4_3:47678338-47678357 Msa0644140:intron 30.0%
ATTAGTTAATACGGTCTTGA+GGG - chr4_3:47678339-47678358 Msa0644140:intron 30.0%
GAAACATATTGAGAAGATCA+AGG + chr4_3:47678452-47678471 None:intergenic 30.0%
!!! TAGGGTTTTATATTTTAGCG+TGG - chr4_3:47678713-47678732 Msa0644140:intron 30.0%
! TCTTTTTGAATACTTTCCGT+AGG + chr4_3:47678799-47678818 None:intergenic 30.0%
!! GGAAAGTATTCAAAAAGAGT+TGG - chr4_3:47678801-47678820 Msa0644140:intron 30.0%
TATTCAAAAAGAGTTGGAAC+CGG - chr4_3:47678807-47678826 Msa0644140:intron 30.0%
GTAGTATTAATTAGAGTGGA+TGG - chr4_3:47678916-47678935 Msa0644140:intron 30.0%
ATATGCCATATATGCATGTA+AGG + chr4_3:47679188-47679207 None:intergenic 30.0%
! CATGATGTTGTTGATTATCT+TGG + chr4_3:47679270-47679289 None:intergenic 30.0%
TGAACATTAAAGTTATGCCT+AGG + chr4_3:47679447-47679466 None:intergenic 30.0%
! CAATTGATTTCATGTATAGC+TGG - chr4_3:47679543-47679562 Msa0644140:intron 30.0%
!! GGTATTACTTTGAGATTACT+TGG + chr4_3:47679719-47679738 None:intergenic 30.0%
! AGTTTTCTATGCAACTAAAG+TGG + chr4_3:47679844-47679863 None:intergenic 30.0%
GAACGAGTCTTAGAAAAATT+GGG + chr4_3:47679874-47679893 None:intergenic 30.0%
TGAACGAGTCTTAGAAAAAT+TGG + chr4_3:47679875-47679894 None:intergenic 30.0%
TGAATTTCGAGACAGAAATT+GGG + chr4_3:47679942-47679961 None:intergenic 30.0%
TTGAATTTCGAGACAGAAAT+TGG + chr4_3:47679943-47679962 None:intergenic 30.0%
CTAAACACAACAAACTACAA+TGG + chr4_3:47680143-47680162 None:intergenic 30.0%
ATATGTACCTCTTAGTTTAG+AGG - chr4_3:47680302-47680321 Msa0644140:intron 30.0%
GTTGTGGAAAAACTTAACAA+GGG + chr4_3:47680598-47680617 None:intergenic 30.0%
TGTTGTGGAAAAACTTAACA+AGG + chr4_3:47680599-47680618 None:intergenic 30.0%
! TTGTTAAGTTTTTCCACAAC+AGG - chr4_3:47680598-47680617 Msa0644140:intron 30.0%
ATACATGCCTATTACATGAA+AGG + chr4_3:47680976-47680995 None:intergenic 30.0%
TTGATCAAGAGTAAGAGAAA+AGG + chr4_3:47681080-47681099 None:intergenic 30.0%
TAGAGTTCAGGATAGAAATT+GGG + chr4_3:47681268-47681287 None:intergenic 30.0%
TTAGAGTTCAGGATAGAAAT+TGG + chr4_3:47681269-47681288 None:intergenic 30.0%
!! TTCTAATTTTGGTGATAGAG+TGG - chr4_3:47681322-47681341 Msa0644140:intron 30.0%
! ATTTCTTGACTTTTATTGGG+TGG - chr4_3:47681549-47681568 Msa0644140:intron 30.0%
TCCATTGCTTAATTACTCAA+AGG + chr4_3:47681580-47681599 None:intergenic 30.0%
! TGGAGTATTTAAAACAAGAG+AGG - chr4_3:47682018-47682037 Msa0644140:intron 30.0%
GTATGGCCTAATAGAAAAAA+AGG - chr4_3:47682118-47682137 Msa0644140:intron 30.0%
TTCTCAATTGGAGTAATTAC+AGG - chr4_3:47682332-47682351 Msa0644140:intron 30.0%
AGTTCCTAATATAATACTCC+AGG + chr4_3:47682551-47682570 None:intergenic 30.0%
!!! CTGAAAGTAGTTTTGATAGA+AGG + chr4_3:47682659-47682678 None:intergenic 30.0%
!! AGTGAGATGGCTTTTAAAAA+GGG + chr4_3:47682714-47682733 None:intergenic 30.0%
!! TAGTGAGATGGCTTTTAAAA+AGG + chr4_3:47682715-47682734 None:intergenic 30.0%
TAATGTTTGTAATTGGGTCA+AGG + chr4_3:47682797-47682816 None:intergenic 30.0%
TTTGTTACAATTCTTCACAG+AGG - chr4_3:47682842-47682861 Msa0644140:three_prime_UTR 30.0%
AAAAGACAAGAAATGGAGTA+AGG + chr4_3:47682961-47682980 None:intergenic 30.0%
CCAATATCAATAACTCTTTC+AGG + chr4_3:47682998-47683017 None:intergenic 30.0%
CCTGAAAGAGTTATTGATAT+TGG - chr4_3:47682995-47683014 Msa0644140:three_prime_UTR 30.0%
AGTAGAAATTTAACTGCACA+TGG - chr4_3:47683046-47683065 Msa0644140:three_prime_UTR 30.0%
!!! CATTACTATTTTACTGACTC+TGG - chr4_3:47683301-47683320 Msa0644140:three_prime_UTR 30.0%
TTCAAGATTTATGTAGCATG+AGG + chr4_3:47683365-47683384 None:intergenic 30.0%
! TTTTATTGACCCCATGAATT+TGG - chr4_3:47683588-47683607 Msa0644140:intron 30.0%
! TGCATTTTTCCAAATTCATG+GGG + chr4_3:47683600-47683619 None:intergenic 30.0%
GAATTTGGAAAAATGCAAAG+AGG - chr4_3:47683603-47683622 Msa0644140:intron 30.0%
!! AATATACAGTGTAGGTTGAT+TGG + chr4_3:47683969-47683988 None:intergenic 30.0%
TATCTATTAGAACTGCTTAG+AGG + chr4_3:47684007-47684026 None:intergenic 30.0%
! AGCAGTTCTAATAGATATGA+TGG - chr4_3:47684010-47684029 Msa0644140:intron 30.0%
TCCTATGATGAATTCCATAT+GGG + chr4_3:47684167-47684186 None:intergenic 30.0%
ATCCTATGATGAATTCCATA+TGG + chr4_3:47684168-47684187 None:intergenic 30.0%
GATGAAATCATGTTCCAAAT+TGG - chr4_3:47684204-47684223 Msa0644140:intron 30.0%
TAAGGACATGTTAACCAATT+TGG + chr4_3:47684221-47684240 None:intergenic 30.0%
CAAATATAGTCGCTATTGTA+AGG + chr4_3:47684239-47684258 None:intergenic 30.0%
! AAAATGTGAGCATTTTGCTT+TGG + chr4_3:47684554-47684573 None:intergenic 30.0%
! TTCAGAGAACACTTCTAAAA+AGG + chr4_3:47684591-47684610 None:intergenic 30.0%
TAACATATGATATGTTGGGT+GGG + chr4_3:47684766-47684785 None:intergenic 30.0%
TTAACATATGATATGTTGGG+TGG + chr4_3:47684767-47684786 None:intergenic 30.0%
GTTAAACTTAATCTACACCT+TGG - chr4_3:47684886-47684905 Msa0644140:intron 30.0%
! CTTTTTATGCAATTTGTCCA+AGG + chr4_3:47684906-47684925 None:intergenic 30.0%
AAATCACAACAGTAACATGA+AGG + chr4_3:47685029-47685048 None:intergenic 30.0%
GCATGAATCACTATGTTAAT+CGG + chr4_3:47685181-47685200 None:intergenic 30.0%
ATGGAAATATTTCACGAATG+AGG + chr4_3:47685293-47685312 None:intergenic 30.0%
ATGAGCTGATAGAAACTATA+GGG + chr4_3:47685317-47685336 None:intergenic 30.0%
AATGAGCTGATAGAAACTAT+AGG + chr4_3:47685318-47685337 None:intergenic 30.0%
! AGTCTTTTCATTCTAAGTTC+TGG - chr4_3:47685356-47685375 Msa0644140:intron 30.0%
AAAACTATCTTCTGATACCA+AGG - chr4_3:47685462-47685481 Msa0644140:intron 30.0%
TGCAATTAATAGTGTATCCT+TGG + chr4_3:47685482-47685501 None:intergenic 30.0%
TAATCGCAATACCGTAATAT+TGG - chr4_3:47685752-47685771 Msa0644140:intron 30.0%
TGGTTAAATATGTTGACATC+CGG - chr4_3:47685776-47685795 Msa0644140:intron 30.0%
! ACCTTTTTCTTAGAGTTAAC+CGG + chr4_3:47685798-47685817 None:intergenic 30.0%
!!! CTTTTTTTGTGTAATTGGTG+AGG - chr4_3:47685867-47685886 Msa0644140:CDS 30.0%
!! AAAGAAGTATTGGATCGAAA+AGG + chr4_3:47686520-47686539 None:intergenic 30.0%
CTAATTCATGATAGAAAAGG+TGG - chr4_3:47686562-47686581 Msa0644140:intron 30.0%
!!! CAACATTCATTTTGAAATGG+AGG + chr4_3:47686626-47686645 None:intergenic 30.0%
ATCATTGCATTTCTTGATGT+GGG + chr4_3:47686662-47686681 None:intergenic 30.0%
AATCATTGCATTTCTTGATG+TGG + chr4_3:47686663-47686682 None:intergenic 30.0%
AATGGTTGAAAGGGATAATT+TGG + chr4_3:47686710-47686729 None:intergenic 30.0%
AAATTATCCCTTTCAACCAT+TGG - chr4_3:47686709-47686728 Msa0644140:intron 30.0%
! GCAAAGCAAAAGTAATGTTT+TGG - chr4_3:47686754-47686773 Msa0644140:intron 30.0%
!! TTTTGGGAGTAGTGTATATA+GGG - chr4_3:47686771-47686790 Msa0644140:intron 30.0%
!! TTCAAAATGAGTGTCACTTT+AGG + chr4_3:47686873-47686892 None:intergenic 30.0%
! ACATGAGTTGGATTGATTTA+TGG - chr4_3:47687050-47687069 Msa0644140:intron 30.0%
ACATGTCCAAAATAGTAATG+GGG + chr4_3:47687102-47687121 None:intergenic 30.0%
AGTAAAGAAAACACGGAATA+TGG - chr4_3:47687171-47687190 Msa0644140:intron 30.0%
GTAAAGAAAACACGGAATAT+GGG - chr4_3:47687172-47687191 Msa0644140:intron 30.0%
GAAATGAATGAGTTTGTGAA+GGG + chr4_3:47687389-47687408 None:intergenic 30.0%
AGAAATGAATGAGTTTGTGA+AGG + chr4_3:47687390-47687409 None:intergenic 30.0%
!!! TTTAAACAAATTTTTGGCGG+CGG + chr4_3:47687561-47687580 None:intergenic 30.0%
!!! AGGACCATAGGTATTTTTTT+TGG + chr4_3:47687645-47687664 None:intergenic 30.0%
!! TAATACTTGGTGCTTTGATT+CGG - chr4_3:47687717-47687736 Msa0644140:intron 30.0%
!!! TTTTGAGGTTTTGAGAATGT+TGG - chr4_3:47687805-47687824 Msa0644140:intron 30.0%
!!! TGATTTTGGTTATGTGTTGT+TGG - chr4_3:47687895-47687914 Msa0644140:intron 30.0%
! TTTCTTTGCTGATTATACTG+AGG - chr4_3:47687982-47688001 Msa0644140:intron 30.0%
ATCAAAAGCTCTTTGAACTT+GGG - chr4_3:47688008-47688027 Msa0644140:intron 30.0%
CAGAAATTTGATGAATACCT+TGG - chr4_3:47688475-47688494 Msa0644140:intron 30.0%
ACATTATTGTGAAGAAAGAG+GGG + chr4_3:47688595-47688614 None:intergenic 30.0%
CACATTATTGTGAAGAAAGA+GGG + chr4_3:47688596-47688615 None:intergenic 30.0%
GCAAAGCAATAAAAATCAAG+TGG - chr4_3:47688662-47688681 Msa0644140:five_prime_UTR 30.0%
ATCCAACACAATGAAGATTA+TGG - chr4_3:47688719-47688738 Msa0644140:five_prime_UTR 30.0%
TCCAACACAATGAAGATTAT+GGG - chr4_3:47688720-47688739 Msa0644140:five_prime_UTR 30.0%
TTTCAAGGTTATTCAGAATG+GGG + chr4_3:47688951-47688970 None:intergenic 30.0%
TTTAGTGCGACAAAACAAAG+GGG + chr4_3:47677679-47677698 None:intergenic 35.0%
CTTTAGTGCGACAAAACAAA+GGG + chr4_3:47677680-47677699 None:intergenic 35.0%
GAAGTATAGATCTGAAAGAG+AGG + chr4_3:47677737-47677756 None:intergenic 35.0%
CAAGGGAAAAAGATGGTATA+AGG - chr4_3:47678041-47678060 Msa0644140:intron 35.0%
!!! GATCTTTTTCACTGTTTCTG+TGG - chr4_3:47678092-47678111 Msa0644140:intron 35.0%
CTAAATCACAGAAATAGGAG+TGG + chr4_3:47678374-47678393 None:intergenic 35.0%
ACTATCCTAATCATTGGAAC+CGG - chr4_3:47678547-47678566 Msa0644140:intron 35.0%
AATAATCAATGTGGAGACGA+AGG + chr4_3:47678741-47678760 None:intergenic 35.0%
CCTCACGTATTAATTTCCTA+CGG - chr4_3:47678780-47678799 Msa0644140:intron 35.0%
CCTATCTTAAGCATGTATGA+AGG + chr4_3:47678855-47678874 None:intergenic 35.0%
CCTTCATACATGCTTAAGAT+AGG - chr4_3:47678852-47678871 Msa0644140:intron 35.0%
CAAGTACTTGAAACAAGTTG+AGG + chr4_3:47678885-47678904 None:intergenic 35.0%
ATTAGAGTGGATGGTATCTT+TGG - chr4_3:47678925-47678944 Msa0644140:intron 35.0%
TGTTAGTTGTTACACAGAGT+TGG + chr4_3:47679155-47679174 None:intergenic 35.0%
CTCAACCTTACATGCATATA+TGG - chr4_3:47679180-47679199 Msa0644140:intron 35.0%
TATCTTGGCTGTGAAATGAA+AGG + chr4_3:47679255-47679274 None:intergenic 35.0%
TAGATGTAAGAGTCTATTGC+TGG + chr4_3:47679338-47679357 None:intergenic 35.0%
CTCTTACATCTACTTCCAAA+AGG - chr4_3:47679346-47679365 Msa0644140:intron 35.0%
! CTATCTGATTGGTAGCTAAT+TGG - chr4_3:47679380-47679399 Msa0644140:intron 35.0%
CATTAAAGTTATGCCTAGGT+AGG + chr4_3:47679443-47679462 None:intergenic 35.0%
AAAAGTAAAGGTGGTGTAAG+AGG + chr4_3:47679500-47679519 None:intergenic 35.0%
CAACTAAAGTGGATAGTCTA+AGG + chr4_3:47679833-47679852 None:intergenic 35.0%
!!! CACACTTTGTTTTTTCTCGA+AGG - chr4_3:47680063-47680082 Msa0644140:intron 35.0%
CTGTCATTGTTGTGTAAAGT+TGG - chr4_3:47680113-47680132 Msa0644140:intron 35.0%
!! ATTTGGTTCCTCTAAAGTGA+GGG - chr4_3:47680198-47680217 Msa0644140:intron 35.0%
! TTTTGCTCCTCTAAACTAAG+AGG + chr4_3:47680312-47680331 None:intergenic 35.0%
CCTAAGGATATATACAAACC+TGG + chr4_3:47680638-47680657 None:intergenic 35.0%
CCAGGTTTGTATATATCCTT+AGG - chr4_3:47680635-47680654 Msa0644140:intron 35.0%
ATCCTTAGGTTACATTCACA+TGG - chr4_3:47680649-47680668 Msa0644140:intron 35.0%
AACCATGTGAATGTAACCTA+AGG + chr4_3:47680654-47680673 None:intergenic 35.0%
GCAAAAAATTGTTGCACTTG+TGG - chr4_3:47680777-47680796 Msa0644140:intron 35.0%
AAGCATAAGAGCTCGAAAAA+AGG - chr4_3:47681509-47681528 Msa0644140:intron 35.0%
GCCTTTGAGTAATTAAGCAA+TGG - chr4_3:47681576-47681595 Msa0644140:intron 35.0%
AATGGTAGTTGCTGAAATGT+TGG - chr4_3:47681607-47681626 Msa0644140:intron 35.0%
TGTAACAAAGCACAATGCAA+AGG + chr4_3:47682831-47682850 None:intergenic 35.0%
! TTACATTTGCTGCATCCAAT+AGG - chr4_3:47682888-47682907 Msa0644140:three_prime_UTR 35.0%
AACTTAATAGCGATAGGTTG+AGG + chr4_3:47683076-47683095 None:intergenic 35.0%
! AATCTCGAAAGGGTGTATTA+GGG - chr4_3:47683128-47683147 Msa0644140:three_prime_UTR 35.0%
!! AATTTTGGCATTCCTTACCA+AGG + chr4_3:47683210-47683229 None:intergenic 35.0%
! TAGCAGAACCCATTTGAAAT+TGG - chr4_3:47683389-47683408 Msa0644140:CDS 35.0%
TTCTCTGATGACAAATCATG+TGG + chr4_3:47683434-47683453 None:intergenic 35.0%
GAGGTGTAGATTAGAATTAG+TGG - chr4_3:47683622-47683641 Msa0644140:intron 35.0%
! TTGTGTCATTGTTGCTAAAG+GGG + chr4_3:47683797-47683816 None:intergenic 35.0%
! GTTGTGTCATTGTTGCTAAA+GGG + chr4_3:47683798-47683817 None:intergenic 35.0%
! AGTTGTGTCATTGTTGCTAA+AGG + chr4_3:47683799-47683818 None:intergenic 35.0%
! CATTAGCTCTTTCTCATCAA+TGG + chr4_3:47683824-47683843 None:intergenic 35.0%
CATTGATGAGAAAGAGCTAA+TGG - chr4_3:47683822-47683841 Msa0644140:intron 35.0%
TTGGAGAAGCAAAAATCGTT+TGG + chr4_3:47683950-47683969 None:intergenic 35.0%
TCCCATATGGAATTCATCAT+AGG - chr4_3:47684163-47684182 Msa0644140:intron 35.0%
GCACCTATTATTTCCGTAAA+TGG - chr4_3:47684689-47684708 Msa0644140:intron 35.0%
GCTCCATTTACGGAAATAAT+AGG + chr4_3:47684695-47684714 None:intergenic 35.0%
GATCAACTCCTACATAATCA+AGG - chr4_3:47684732-47684751 Msa0644140:intron 35.0%
AGTTCTACGGAATTGGAATT+TGG + chr4_3:47684862-47684881 None:intergenic 35.0%
AACAAAGAGTTCTACGGAAT+TGG + chr4_3:47684869-47684888 None:intergenic 35.0%
AGTTGATTGTGGAAGAGAAA+TGG - chr4_3:47685065-47685084 Msa0644140:intron 35.0%
! ACTCTTTGCTAGCTTAGTTA+TGG + chr4_3:47685105-47685124 None:intergenic 35.0%
! TAAGCTAGCAAAGAGTATGA+AGG - chr4_3:47685109-47685128 Msa0644140:intron 35.0%
! AAGCTAGCAAAGAGTATGAA+GGG - chr4_3:47685110-47685129 Msa0644140:intron 35.0%
GAAATATTTCACGAATGAGG+AGG + chr4_3:47685290-47685309 None:intergenic 35.0%
CTGATAGAAACTATAGGGTA+TGG + chr4_3:47685312-47685331 None:intergenic 35.0%
! TCCGGTTAACTCTAAGAAAA+AGG - chr4_3:47685794-47685813 Msa0644140:intron 35.0%
! GATTGGCCGTATTTATGAAT+TGG - chr4_3:47686110-47686129 Msa0644140:intron 35.0%
!!! GATACTGTTTTTGACACAGT+TGG - chr4_3:47686150-47686169 Msa0644140:intron 35.0%
TGTGCTAGATACAAAACAGA+TGG - chr4_3:47686173-47686192 Msa0644140:intron 35.0%
TCATCTTAGAGTTGTTCAGA+AGG + chr4_3:47686289-47686308 None:intergenic 35.0%
GCAATGGATATCGTTAAGTT+TGG - chr4_3:47686423-47686442 Msa0644140:intron 35.0%
TATCGTTAAGTTTGGAGAGT+TGG - chr4_3:47686431-47686450 Msa0644140:intron 35.0%
!! GAAGAAGCAATAGTTTTGCA+AGG - chr4_3:47686453-47686472 Msa0644140:intron 35.0%
AGAGAAACCAATGGTTGAAA+GGG + chr4_3:47686719-47686738 None:intergenic 35.0%
TAGAGAAACCAATGGTTGAA+AGG + chr4_3:47686720-47686739 None:intergenic 35.0%
GATAGTAGTAGAGAAACCAA+TGG + chr4_3:47686728-47686747 None:intergenic 35.0%
!!! GTTTTGGGAGTAGTGTATAT+AGG - chr4_3:47686770-47686789 Msa0644140:intron 35.0%
TTTGGGAGTAGTGTATATAG+GGG - chr4_3:47686772-47686791 Msa0644140:intron 35.0%
! AGTGTATATAGGGGTACAAT+TGG - chr4_3:47686781-47686800 Msa0644140:intron 35.0%
! ATATAGGGGTACAATTGGAA+AGG - chr4_3:47686786-47686805 Msa0644140:intron 35.0%
! AAGTTCCCCCATTACTATTT+TGG - chr4_3:47687093-47687112 Msa0644140:intron 35.0%
CATGTCCAAAATAGTAATGG+GGG + chr4_3:47687101-47687120 None:intergenic 35.0%
GTTCGGATTCTAATAATGAG+AGG + chr4_3:47687129-47687148 None:intergenic 35.0%
AATCCGAACCGTTAAAAAGT+GGG - chr4_3:47687140-47687159 Msa0644140:intron 35.0%
!!! TTTTGCACCCCACTTTTTAA+CGG + chr4_3:47687151-47687170 None:intergenic 35.0%
AGGGTCGTTGATCAAATAAA+CGG + chr4_3:47687242-47687261 None:intergenic 35.0%
GAAATGTTAAGGCTAGAAAC+GGG + chr4_3:47687623-47687642 None:intergenic 35.0%
GGAAATGTTAAGGCTAGAAA+CGG + chr4_3:47687624-47687643 None:intergenic 35.0%
!! TTTTCTAGATCTAGGACCAT+AGG + chr4_3:47687657-47687676 None:intergenic 35.0%
!!! CCTTTGTTTTTTGTCTGTTC+CGG - chr4_3:47687692-47687711 Msa0644140:intron 35.0%
! CAAAGCACCAAGTATTAAAC+CGG + chr4_3:47687714-47687733 None:intergenic 35.0%
!! GTTGGCACAGTTTTATGATT+TGG - chr4_3:47687752-47687771 Msa0644140:intron 35.0%
!!! TTTTGAGAATGTTGGTGTTG+TGG - chr4_3:47687813-47687832 Msa0644140:intron 35.0%
AACACATAACCAAAATCAGC+AGG + chr4_3:47687893-47687912 None:intergenic 35.0%
! TAATGATTCTCATTTGCTGC+AGG - chr4_3:47687952-47687971 Msa0644140:intron 35.0%
CATCAAAAGCTCTTTGAACT+TGG - chr4_3:47688007-47688026 Msa0644140:intron 35.0%
!!! GCAAAGCTGAATTTTTTCAC+TGG + chr4_3:47688270-47688289 None:intergenic 35.0%
AAGTGGTTGAATAGTGTAGT+TGG - chr4_3:47688520-47688539 Msa0644140:intron 35.0%
GCACATTATTGTGAAGAAAG+AGG + chr4_3:47688597-47688616 None:intergenic 35.0%
CTTTCTTCACAATAATGTGC+AGG - chr4_3:47688597-47688616 Msa0644140:exon 35.0%
TCACAATAATGTGCAGGAAA+AGG - chr4_3:47688603-47688622 Msa0644140:five_prime_UTR 35.0%
TCAAGTGGAAAGAAATGGAA+AGG - chr4_3:47688677-47688696 Msa0644140:five_prime_UTR 35.0%
TCCCATAATCTTCATTGTGT+TGG + chr4_3:47688724-47688743 None:intergenic 35.0%
GCTTTAGTGCGACAAAACAA+AGG + chr4_3:47677681-47677700 None:intergenic 40.0%
TCACGATTTCGGAAAACGAA+TGG + chr4_3:47677764-47677783 None:intergenic 40.0%
AGATCTGCAAGGGAAAAAGA+TGG - chr4_3:47678034-47678053 Msa0644140:intron 40.0%
ATAGAGAACCCAATAGGCTA+AGG + chr4_3:47678514-47678533 None:intergenic 40.0%
TTAGCCTATTGGGTTCTCTA+TGG - chr4_3:47678513-47678532 Msa0644140:intron 40.0%
TTGGCCACTATCCTAATCAT+TGG - chr4_3:47678541-47678560 Msa0644140:intron 40.0%
GGTTCCAATGATTAGGATAG+TGG + chr4_3:47678548-47678567 None:intergenic 40.0%
!! TGATACCGGTTCCAATGATT+AGG + chr4_3:47678555-47678574 None:intergenic 40.0%
!! ACTCCTAACAGAGTTGATAC+CGG + chr4_3:47678569-47678588 None:intergenic 40.0%
! ATGCACTGATCTATGTGTCT+AGG - chr4_3:47678694-47678713 Msa0644140:intron 40.0%
! TGCACTGATCTATGTGTCTA+GGG - chr4_3:47678695-47678714 Msa0644140:intron 40.0%
CCGTAGGAAATTAATACGTG+AGG + chr4_3:47678783-47678802 None:intergenic 40.0%
CTCAGAAAGAGATTAGACGT+TGG + chr4_3:47679573-47679592 None:intergenic 40.0%
TAGAGGAACCAAATCCACTT+TGG + chr4_3:47680192-47680211 None:intergenic 40.0%
!! GATTTGGTTCCTCTAAAGTG+AGG - chr4_3:47680197-47680216 Msa0644140:intron 40.0%
TCTAAACTATAGCACGTACG+AGG + chr4_3:47680500-47680519 None:intergenic 40.0%
! GTTTCTTTTAGACCACCACA+TGG - chr4_3:47680558-47680577 Msa0644140:intron 40.0%
CAAACCTGGAATGCATTATC+TGG + chr4_3:47680624-47680643 None:intergenic 40.0%
GCACTTGTGGTATGTACAAT+TGG - chr4_3:47680790-47680809 Msa0644140:intron 40.0%
CTTGTGGTATGTACAATTGG+TGG - chr4_3:47680793-47680812 Msa0644140:intron 40.0%
AAGCAAGCTATCGAACAAAG+AGG + chr4_3:47681419-47681438 None:intergenic 40.0%
!! ATAAGTTGGTGACTGTTGTG+AGG - chr4_3:47681476-47681495 Msa0644140:intron 40.0%
TAAGAGCTCGAAAAAAGGTG+TGG - chr4_3:47681514-47681533 Msa0644140:intron 40.0%
!! TCACTTGCTGTGAATCTCTT+CGG - chr4_3:47681637-47681656 Msa0644140:intron 40.0%
AGTGGGTGTGTAGAAATCTA+AGG - chr4_3:47682172-47682191 Msa0644140:intron 40.0%
GTGGGTGTGTAGAAATCTAA+GGG - chr4_3:47682173-47682192 Msa0644140:intron 40.0%
!!! GGACTCACATTTTGAGATGT+AGG - chr4_3:47682863-47682882 Msa0644140:three_prime_UTR 40.0%
AGACAAGAAATGGAGTAAGG+AGG + chr4_3:47682958-47682977 None:intergenic 40.0%
ACAGCGAACTTAATAGCGAT+AGG + chr4_3:47683082-47683101 None:intergenic 40.0%
! GAATCTCGAAAGGGTGTATT+AGG - chr4_3:47683127-47683146 Msa0644140:three_prime_UTR 40.0%
CAGAGTAGAAGATGCCTATT+AGG + chr4_3:47683166-47683185 None:intergenic 40.0%
TCAAGTAATCACGTCCCATA+TGG - chr4_3:47684150-47684169 Msa0644140:intron 40.0%
AGAATGACAAGGAGAGAAGA+TGG - chr4_3:47684667-47684686 Msa0644140:intron 40.0%
AGGAAGAGATGCTCCATTTA+CGG + chr4_3:47684705-47684724 None:intergenic 40.0%
CTCTTCCACAATCAACTCAT+GGG + chr4_3:47685062-47685081 None:intergenic 40.0%
TCTCTTCCACAATCAACTCA+TGG + chr4_3:47685063-47685082 None:intergenic 40.0%
CGCAATACCGTAATATTGGT+TGG - chr4_3:47685756-47685775 Msa0644140:intron 40.0%
GACTTTCCACATGACAATCA+AGG - chr4_3:47686917-47686936 Msa0644140:intron 40.0%
!! CTTTAGCCTTGATTGTCATG+TGG + chr4_3:47686926-47686945 None:intergenic 40.0%
GACAATCAAGGCTAAAGATG+TGG - chr4_3:47686929-47686948 Msa0644140:intron 40.0%
GAATCCGAACCGTTAAAAAG+TGG - chr4_3:47687139-47687158 Msa0644140:intron 40.0%
ATCCGAACCGTTAAAAAGTG+GGG - chr4_3:47687141-47687160 Msa0644140:intron 40.0%
! CACGGAATATGGGTTAAAAC+AGG - chr4_3:47687182-47687201 Msa0644140:intron 40.0%
! TGATTTAAGATCAGACGACC+TGG - chr4_3:47687296-47687315 Msa0644140:intron 40.0%
AATGAGTTTGTGAAGGGAGT+GGG + chr4_3:47687383-47687402 None:intergenic 40.0%
CCGGAACAGACAAAAAACAA+AGG + chr4_3:47687695-47687714 None:intergenic 40.0%
GTCTGTTCCGGTTTAATACT+TGG - chr4_3:47687704-47687723 Msa0644140:intron 40.0%
!!! TTGGTGCTTTGATTCGGTTT+TGG - chr4_3:47687723-47687742 Msa0644140:intron 40.0%
!! GCACAGTTTTATGATTTGGC+CGG - chr4_3:47687756-47687775 Msa0644140:intron 40.0%
!! GTTTTATGATTTGGCCGGTT+TGG - chr4_3:47687761-47687780 Msa0644140:intron 40.0%
ACACAGTAACACATCCAAAC+CGG + chr4_3:47687778-47687797 None:intergenic 40.0%
GGTTATTCAGAATGGGGAAT+AGG + chr4_3:47688945-47688964 None:intergenic 40.0%
! GTCAAAAAGTGTGGCTGCTA+GGG + chr4_3:47677654-47677673 None:intergenic 45.0%
!! CTAGCAGCCACACTTTTTGA+CGG - chr4_3:47677653-47677672 Msa0644140:three_prime_UTR 45.0%
! GTTTTGTCGCACTAAAGCCT+CGG - chr4_3:47677683-47677702 Msa0644140:three_prime_UTR 45.0%
!!! GTCAGAAATGGAGTTTTGGG+CGG + chr4_3:47677807-47677826 None:intergenic 45.0%
! GCGGTCAGAAATGGAGTTTT+GGG + chr4_3:47677810-47677829 None:intergenic 45.0%
! TTCACATGGAGTACTCATCG+AGG + chr4_3:47677832-47677851 None:intergenic 45.0%
TTTCAGTCTGTTACCATCGC+TGG - chr4_3:47677940-47677959 Msa0644140:three_prime_UTR 45.0%
TTTCTCCTCCGATTGAAACC+TGG - chr4_3:47677991-47678010 Msa0644140:three_prime_UTR 45.0%
TTCTCCTCCGATTGAAACCT+GGG - chr4_3:47677992-47678011 Msa0644140:three_prime_UTR 45.0%
ATGCAGAGATGAGATCTGCA+AGG - chr4_3:47678023-47678042 Msa0644140:intron 45.0%
TGCAGAGATGAGATCTGCAA+GGG - chr4_3:47678024-47678043 Msa0644140:intron 45.0%
ATTCTGGCACCTTAGCCTAT+TGG - chr4_3:47678502-47678521 Msa0644140:intron 45.0%
TTCTGGCACCTTAGCCTATT+GGG - chr4_3:47678503-47678522 Msa0644140:intron 45.0%
TGCACCATAGAGAACCCAAT+AGG + chr4_3:47678520-47678539 None:intergenic 45.0%
GAACCGGTATCAACTCTGTT+AGG - chr4_3:47678563-47678582 Msa0644140:intron 45.0%
CATGTATGAAGGCTTTGCAC+TGG + chr4_3:47678844-47678863 None:intergenic 45.0%
AGTGGATGGTATCTTTGGTC+AGG - chr4_3:47678930-47678949 Msa0644140:intron 45.0%
TTATGCCTAGGTAGGCTTTC+TGG + chr4_3:47679435-47679454 None:intergenic 45.0%
CGAGACAGAAATTGGGAATG+TGG + chr4_3:47679935-47679954 None:intergenic 45.0%
TGTTGGTGTGCTTGTGAACA+TGG + chr4_3:47680167-47680186 None:intergenic 45.0%
! CCAAATCCACTTTGGTGTGT+TGG + chr4_3:47680184-47680203 None:intergenic 45.0%
! CCAACACACCAAAGTGGATT+TGG - chr4_3:47680181-47680200 Msa0644140:three_prime_UTR 45.0%
CATTCAGTCCCTCACTTTAG+AGG + chr4_3:47680209-47680228 None:intergenic 45.0%
!! CTCTAAAGTGAGGGACTGAA+TGG - chr4_3:47680207-47680226 Msa0644140:intron 45.0%
GGTGGTCTAAAAGAAACAGC+AGG + chr4_3:47680555-47680574 None:intergenic 45.0%
ACCACATGGAATCAGTGCAA+GGG - chr4_3:47680572-47680591 Msa0644140:intron 45.0%
ATGCATTATCTGGCCTGTTG+TGG + chr4_3:47680614-47680633 None:intergenic 45.0%
TTCTTTGCCAGGTTGCTCTA+TGG - chr4_3:47680731-47680750 Msa0644140:intron 45.0%
TGATGTTCCATAGAGCAACC+TGG + chr4_3:47680741-47680760 None:intergenic 45.0%
CCAAGAGGAGATTAGAGTTC+AGG + chr4_3:47681280-47681299 None:intergenic 45.0%
CCTGAACTCTAATCTCCTCT+TGG - chr4_3:47681277-47681296 Msa0644140:intron 45.0%
!! ATCTCTTCGGCCGTTTTAAG+TGG - chr4_3:47681650-47681669 Msa0644140:intron 45.0%
GGAGAACGTTGGTACCTAAT+AGG - chr4_3:47683149-47683168 Msa0644140:three_prime_UTR 45.0%
TGGAATCAGACAACCAACCT+TGG - chr4_3:47683190-47683209 Msa0644140:three_prime_UTR 45.0%
TCAGACAACCAACCTTGGTA+AGG - chr4_3:47683195-47683214 Msa0644140:three_prime_UTR 45.0%
TTGGCATTCCTTACCAAGGT+TGG + chr4_3:47683206-47683225 None:intergenic 45.0%
! ATGGAGCATCTCTTCCTGTT+TGG - chr4_3:47684708-47684727 Msa0644140:intron 45.0%
! GTAGGAGTTGATCTCCAAAC+AGG + chr4_3:47684725-47684744 None:intergenic 45.0%
!! AGAGTCCCATGAGTTGATTG+TGG - chr4_3:47685054-47685073 Msa0644140:intron 45.0%
!!! CACCCCACTTTTTAACGGTT+CGG + chr4_3:47687146-47687165 None:intergenic 45.0%
TTAAAACAGGCCCAAGTGCT+TGG - chr4_3:47687195-47687214 Msa0644140:intron 45.0%
TAAAACAGGCCCAAGTGCTT+GGG - chr4_3:47687196-47687215 Msa0644140:intron 45.0%
ACAGCTATCATCACATCACC+CGG + chr4_3:47687275-47687294 None:intergenic 45.0%
GAATGAGTTTGTGAAGGGAG+TGG + chr4_3:47687384-47687403 None:intergenic 45.0%
!! ATTCGGTTTTGGCGTTGAGT+TGG - chr4_3:47687734-47687753 Msa0644140:intron 45.0%
!! GTGTTGTGGTGTTGTGATTC+TGG - chr4_3:47687827-47687846 Msa0644140:intron 45.0%
!!! GAGTTTGTGCCTGCTGATTT+TGG - chr4_3:47687881-47687900 Msa0644140:intron 45.0%
! TGCAGGAAAAGGAAGCACAA+TGG - chr4_3:47688614-47688633 Msa0644140:five_prime_UTR 45.0%
! GCAGGAAAAGGAAGCACAAT+GGG - chr4_3:47688615-47688634 Msa0644140:five_prime_UTR 45.0%
! AAGGAAGCACAATGGGATCA+TGG - chr4_3:47688622-47688641 Msa0644140:five_prime_UTR 45.0%
! AGGAAGCACAATGGGATCAT+GGG - chr4_3:47688623-47688642 Msa0644140:five_prime_UTR 45.0%
TAGGCTATAGATACAGCAGC+AGG - chr4_3:47688885-47688904 Msa0644140:five_prime_UTR 45.0%
TTCAGAATGGGGAATAGGTC+CGG + chr4_3:47688940-47688959 None:intergenic 45.0%
!!! TTTTATTTTTTTTTTGAAAA+AGG + chr4_3:47684475-47684494 None:intergenic 5.0%
! CGTCAAAAAGTGTGGCTGCT+AGG + chr4_3:47677655-47677674 None:intergenic 50.0%
AAAGGGGCCGTCAAAAAGTG+TGG + chr4_3:47677663-47677682 None:intergenic 50.0%
! GGCGGTCAGAAATGGAGTTT+TGG + chr4_3:47677811-47677830 None:intergenic 50.0%
! ACATGGAGTACTCATCGAGG+CGG + chr4_3:47677829-47677848 None:intergenic 50.0%
GACGGTGTCTAGGTTTCACA+TGG + chr4_3:47677846-47677865 None:intergenic 50.0%
ACTCATCAGTGACGGTGTCT+AGG + chr4_3:47677856-47677875 None:intergenic 50.0%
TGGAGGTCCCAGGTTTCAAT+CGG + chr4_3:47678002-47678021 None:intergenic 50.0%
GATCTCATCTCTGCATGTGG+AGG + chr4_3:47678019-47678038 None:intergenic 50.0%
GCAGATCTCATCTCTGCATG+TGG + chr4_3:47678022-47678041 None:intergenic 50.0%
TGGGTTCTCTATGGTGCACT+TGG - chr4_3:47678522-47678541 Msa0644140:intron 50.0%
AAAGAGTTGGAACCGGCACA+TGG - chr4_3:47678814-47678833 Msa0644140:intron 50.0%
GGATGGTATCTTTGGTCAGG+TGG - chr4_3:47678933-47678952 Msa0644140:intron 50.0%
TCTGACCAGAAAGCCTACCT+AGG - chr4_3:47679427-47679446 Msa0644140:intron 50.0%
AGCACACCAACACACCAAAG+TGG - chr4_3:47680175-47680194 Msa0644140:three_prime_UTR 50.0%
ACTATAGCACGTACGAGGTG+CGG + chr4_3:47680495-47680514 None:intergenic 50.0%
GCAGGTGCACGTAAATAGAC+TGG + chr4_3:47680537-47680556 None:intergenic 50.0%
!! CTTGCACTGATTCCATGTGG+TGG + chr4_3:47680573-47680592 None:intergenic 50.0%
CACCACATGGAATCAGTGCA+AGG - chr4_3:47680571-47680590 Msa0644140:intron 50.0%
CAGGCCAGATAATGCATTCC+AGG - chr4_3:47680617-47680636 Msa0644140:intron 50.0%
TCGTGTGCAGGAATCTCGAA+AGG - chr4_3:47683117-47683136 Msa0644140:three_prime_UTR 50.0%
CGTGTGCAGGAATCTCGAAA+GGG - chr4_3:47683118-47683137 Msa0644140:three_prime_UTR 50.0%
GGGTGTATTAGGGAGAACGT+TGG - chr4_3:47683138-47683157 Msa0644140:three_prime_UTR 50.0%
TGGGCCACAGAGATTGAATC+TGG - chr4_3:47687215-47687234 Msa0644140:intron 50.0%
GGGCCACAGAGATTGAATCT+GGG - chr4_3:47687216-47687235 Msa0644140:intron 50.0%
AACGACCCTGATCTGATCAC+CGG - chr4_3:47687253-47687272 Msa0644140:intron 50.0%
ATCACCCGGTGATCAGATCA+GGG + chr4_3:47687261-47687280 None:intergenic 50.0%
ATCAGACGACCTGGATCTGA+GGG - chr4_3:47687305-47687324 Msa0644140:intron 50.0%
AGGGTGCACAGCTATAGCTT+AGG - chr4_3:47687324-47687343 Msa0644140:intron 50.0%
TATAGCTTAGGCATACCGCG+TGG - chr4_3:47687336-47687355 Msa0644140:intron 50.0%
ATACCGCGTGGAATCAGAGA+GGG - chr4_3:47687348-47687367 Msa0644140:intron 50.0%
TATCCCTCTCTGATTCCACG+CGG + chr4_3:47687354-47687373 None:intergenic 50.0%
CTGCTAGGGTATGAAGGAGG+AGG + chr4_3:47677640-47677659 None:intergenic 55.0%
TGGCTGCTAGGGTATGAAGG+AGG + chr4_3:47677643-47677662 None:intergenic 55.0%
GTGTGGCTGCTAGGGTATGA+AGG + chr4_3:47677646-47677665 None:intergenic 55.0%
TGTCGCACTAAAGCCTCGGT+TGG - chr4_3:47677687-47677706 Msa0644140:three_prime_UTR 55.0%
!!! AATGGAGTTTTGGGCGGCGA+AGG + chr4_3:47677801-47677820 None:intergenic 55.0%
CTCATCGAGGCGGTCAGAAA+TGG + chr4_3:47677819-47677838 None:intergenic 55.0%
TTACCATCGCTGGAGCTCGA+AGG - chr4_3:47677950-47677969 Msa0644140:three_prime_UTR 55.0%
AGGTCCCAGGTTTCAATCGG+AGG + chr4_3:47677999-47678018 None:intergenic 55.0%
TGCACTGGACTTCCATGTGC+CGG + chr4_3:47678829-47678848 None:intergenic 55.0%
CTATAGCACGTACGAGGTGC+GGG + chr4_3:47680494-47680513 None:intergenic 55.0%
!! GCCCTTGCACTGATTCCATG+TGG + chr4_3:47680576-47680595 None:intergenic 55.0%
GGCATCTTCTACTCTGCAGC+TGG - chr4_3:47683170-47683189 Msa0644140:three_prime_UTR 55.0%
TCTCTGTGGCCCAAGCACTT+GGG + chr4_3:47687208-47687227 None:intergenic 55.0%
ATCTCTGTGGCCCAAGCACT+TGG + chr4_3:47687209-47687228 None:intergenic 55.0%
CGGCCCAGATTCAATCTCTG+TGG + chr4_3:47687222-47687241 None:intergenic 55.0%
ACGACCCTGATCTGATCACC+GGG - chr4_3:47687254-47687273 Msa0644140:intron 55.0%
CATCACCCGGTGATCAGATC+AGG + chr4_3:47687262-47687281 None:intergenic 55.0%
GATCAGACGACCTGGATCTG+AGG - chr4_3:47687304-47687323 Msa0644140:intron 55.0%
CATACCGCGTGGAATCAGAG+AGG - chr4_3:47687347-47687366 Msa0644140:intron 55.0%
! GTTAGTCTCGCAGCCAACCG+AGG + chr4_3:47677703-47677722 None:intergenic 60.0%
ATGCCTTCGAGCTCCAGCGA+TGG + chr4_3:47677956-47677975 None:intergenic 60.0%
TCTCTGCATGTGGAGGTCCC+AGG + chr4_3:47678012-47678031 None:intergenic 60.0%
AGCTGTGCACCCTCAGATCC+AGG + chr4_3:47687317-47687336 None:intergenic 60.0%
GAGAAGACGGGAAGGGGAGA+GGG + chr4_3:47687460-47687479 None:intergenic 60.0%
TCTCCCCTTCCCGTCTTCTC+CGG - chr4_3:47687460-47687479 Msa0644140:intron 60.0%
GTCGTAAGCTGTTCCAGCGG+CGG + chr4_3:47687509-47687528 None:intergenic 60.0%
CGCGTCGTAAGCTGTTCCAG+CGG + chr4_3:47687512-47687531 None:intergenic 60.0%
CGCTGGAACAGCTTACGACG+CGG - chr4_3:47687510-47687529 Msa0644140:intron 60.0%
ACAGCTTACGACGCGGTGAC+CGG - chr4_3:47687517-47687536 Msa0644140:intron 60.0%
GGAGAAGACGGGAAGGGGAG+AGG + chr4_3:47687461-47687480 None:intergenic 65.0%
CCACCGGAGAAGACGGGAAG+GGG + chr4_3:47687466-47687485 None:intergenic 65.0%
CCCACCGGAGAAGACGGGAA+GGG + chr4_3:47687467-47687486 None:intergenic 65.0%
CCCTTCCCGTCTTCTCCGGT+GGG - chr4_3:47687464-47687483 Msa0644140:intron 65.0%
CCTTCCCGTCTTCTCCGGTG+GGG - chr4_3:47687465-47687484 Msa0644140:intron 65.0%
GGAACCCCACCGGAGAAGAC+GGG + chr4_3:47687472-47687491 None:intergenic 65.0%
CGGAACCCCACCGGAGAAGA+CGG + chr4_3:47687473-47687492 None:intergenic 65.0%
CGTCTTCTCCGGTGGGGTTC+CGG - chr4_3:47687471-47687490 Msa0644140:intron 65.0%
CCCCTTCCCGTCTTCTCCGG+TGG - chr4_3:47687463-47687482 Msa0644140:intron 70.0%
CCCCACCGGAGAAGACGGGA+AGG + chr4_3:47687468-47687487 None:intergenic 70.0%
TTCTCCGGTGGGGTTCCGGC+TGG - chr4_3:47687475-47687494 Msa0644140:intron 70.0%
TCCGGTGGGGTTCCGGCTGG+TGG - chr4_3:47687478-47687497 Msa0644140:intron 75.0%
GCCACCAGCCGGAACCCCAC+CGG + chr4_3:47687482-47687501 None:intergenic 75.0%
GGTGGGGTTCCGGCTGGTGG+CGG - chr4_3:47687481-47687500 Msa0644140:intron 75.0%
ACGCGGTGACCGGCCGTCCA+AGG - chr4_3:47687527-47687546 Msa0644140:intron 75.0%
CGGTGACCGGCCGTCCAAGG+TGG - chr4_3:47687530-47687549 Msa0644140:intron 75.0%
GCGACGCCACCTTGGACGGC+CGG + chr4_3:47687539-47687558 None:intergenic 75.0%
GGCGGCGACGCCACCTTGGA+CGG + chr4_3:47687543-47687562 None:intergenic 75.0%
! GCGGCGGTTCCGCCACCAGC+CGG + chr4_3:47687493-47687512 None:intergenic 80.0%
!!! GCTGGTGGCGGAACCGCCGC+TGG - chr4_3:47687493-47687512 Msa0644140:intron 80.0%
! TGGCGGCGGCGACGCCACCT+TGG + chr4_3:47687547-47687566 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 47677613 47689018 47677613 ID=Msa0644140;Name=Msa0644140
chr4_3 mRNA 47677613 47689018 47677613 ID=Msa0644140-mRNA-1;Parent=Msa0644140;Name=Msa0644140-mRNA-1;_AED=0.20;_eAED=0.20;_QI=418|0.71|1|1|0.42|0.37|8|1268|91
chr4_3 exon 47677613 47678012 47677613 ID=Msa0644140-mRNA-1:exon:11312;Parent=Msa0644140-mRNA-1
chr4_3 exon 47678602 47678657 47678602 ID=Msa0644140-mRNA-1:exon:11311;Parent=Msa0644140-mRNA-1
chr4_3 exon 47680124 47680207 47680124 ID=Msa0644140-mRNA-1:exon:11310;Parent=Msa0644140-mRNA-1
chr4_3 exon 47681878 47681986 47681878 ID=Msa0644140-mRNA-1:exon:11309;Parent=Msa0644140-mRNA-1
chr4_3 exon 47682769 47683504 47682769 ID=Msa0644140-mRNA-1:exon:11308;Parent=Msa0644140-mRNA-1
chr4_3 exon 47685833 47685889 47685833 ID=Msa0644140-mRNA-1:exon:11307;Parent=Msa0644140-mRNA-1
chr4_3 exon 47685993 47686062 47685993 ID=Msa0644140-mRNA-1:exon:11306;Parent=Msa0644140-mRNA-1
chr4_3 exon 47688569 47689018 47688569 ID=Msa0644140-mRNA-1:exon:11305;Parent=Msa0644140-mRNA-1
chr4_3 five_prime_UTR 47688601 47689018 47688601 ID=Msa0644140-mRNA-1:five_prime_utr;Parent=Msa0644140-mRNA-1
chr4_3 CDS 47688569 47688600 47688569 ID=Msa0644140-mRNA-1:cds;Parent=Msa0644140-mRNA-1
chr4_3 CDS 47685993 47686062 47685993 ID=Msa0644140-mRNA-1:cds;Parent=Msa0644140-mRNA-1
chr4_3 CDS 47685833 47685889 47685833 ID=Msa0644140-mRNA-1:cds;Parent=Msa0644140-mRNA-1
chr4_3 CDS 47683388 47683504 47683388 ID=Msa0644140-mRNA-1:cds;Parent=Msa0644140-mRNA-1
chr4_3 three_prime_UTR 47682769 47683387 47682769 ID=Msa0644140-mRNA-1:three_prime_utr;Parent=Msa0644140-mRNA-1
chr4_3 three_prime_UTR 47681878 47681986 47681878 ID=Msa0644140-mRNA-1:three_prime_utr;Parent=Msa0644140-mRNA-1
chr4_3 three_prime_UTR 47680124 47680207 47680124 ID=Msa0644140-mRNA-1:three_prime_utr;Parent=Msa0644140-mRNA-1
chr4_3 three_prime_UTR 47678602 47678657 47678602 ID=Msa0644140-mRNA-1:three_prime_utr;Parent=Msa0644140-mRNA-1
chr4_3 three_prime_UTR 47677613 47678012 47677613 ID=Msa0644140-mRNA-1:three_prime_utr;Parent=Msa0644140-mRNA-1
Gene Sequence

>Msa0644140

ATGAGATCTGCAAGGGAAAAAGATGGTATAAGACCACCACATGGAATCAGTGCAAGGGCCCTTGTTAAGTTTTTCCACAACAGGCCAGATAATGCATTCCAGGTTGCTCTATGGAACATCATATCATATTCTTTCTTGCAAAAAATTGTTGCACTTGTGGAATCTCGAAAGGGTGTATTAGGGAGAACGTTGGTACCTAATAGGCATCTTCTACTCTGCAGCTGGAATCAGACAACCAACCTTGGTAAGGAATGCCAAAATTTATCTCTACATTAA
Protein sequence

>Msa0644140

MRSAREKDGIRPPHGISARALVKFFHNRPDNAFQVALWNIISYSFLQKIVALVESRKGVLGRTLVPNRHLLLCSWNQTTNLGKECQNLSLH*