AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0414740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0414740 MtrunA17_Chr3g0107741 93.636 220 14 0 1 220 5 224 1.06e-152 422
Msa0414740 MtrunA17_Chr3g0107731 89.954 219 22 0 2 220 6 224 5.70e-146 405
Msa0414740 MtrunA17_Chr2g0312771 62.673 217 81 0 4 220 3 219 5.39e-101 291
Msa0414740 MtrunA17_Chr2g0312751 59.908 217 87 0 4 220 3 219 5.15e-98 284
Msa0414740 MtrunA17_Chr2g0312781 60.377 212 84 0 4 215 20 231 1.26e-94 276
Msa0414740 MtrunA17_Chr2g0312731 59.447 217 88 0 4 220 3 219 5.89e-94 274
Msa0414740 MtrunA17_Chr2g0312811 59.817 219 86 1 4 220 3 221 5.84e-92 269
Msa0414740 MtrunA17_Chr2g0312681 56.682 217 94 0 4 220 3 219 6.15e-90 263
Msa0414740 MtrunA17_Chr2g0312691 59.447 217 88 0 4 220 3 219 6.75e-89 261
Msa0414740 MtrunA17_Chr8g0357211 54.545 220 99 1 1 220 1 219 5.53e-87 256
Msa0414740 MtrunA17_Chr8g0357241 54.091 220 100 1 1 220 1 219 1.72e-86 254
Msa0414740 MtrunA17_Chr2g0312791 59.361 219 87 2 4 220 3 221 1.73e-86 255
Msa0414740 MtrunA17_Chr2g0312711 57.604 217 91 1 4 220 3 218 3.07e-86 254
Msa0414740 MtrunA17_Chr2g0312721 55.607 214 95 0 4 217 3 216 2.77e-85 252
Msa0414740 MtrunA17_Chr5g0433801 50.459 218 106 2 4 220 5 221 6.77e-75 225
Msa0414740 MtrunA17_Chr4g0069471 58.791 182 72 2 3 183 23 202 3.21e-73 221
Msa0414740 MtrunA17_Chr5g0415411 42.273 220 118 4 1 211 1 220 1.95e-47 155
Msa0414740 MtrunA17_Chr8g0363751 38.627 233 126 5 1 219 1 230 1.77e-45 151
Msa0414740 MtrunA17_Chr7g0240681 40.758 211 119 5 3 209 5 213 3.77e-45 150
Msa0414740 MtrunA17_Chr7g0240541 43.367 196 105 6 14 206 16 208 3.82e-44 147
Msa0414740 MtrunA17_Chr7g0240631 38.095 210 125 5 3 209 5 212 3.12e-43 145
Msa0414740 MtrunA17_Chr7g0240641 38.095 210 125 4 3 209 5 212 5.13e-43 144
Msa0414740 MtrunA17_Chr4g0008781 40.187 214 115 7 3 209 6 213 1.17e-42 143
Msa0414740 MtrunA17_Chr3g0132581 46.746 169 89 1 1 169 1 168 1.51e-42 143
Msa0414740 MtrunA17_Chr8g0379581 38.288 222 133 3 1 219 1 221 2.39e-42 142
Msa0414740 MtrunA17_Chr1g0196661 39.906 213 121 4 1 209 1 210 4.56e-41 139
Msa0414740 MtrunA17_Chr7g0240531 41.546 207 116 5 14 217 16 220 6.90e-41 139
Msa0414740 MtrunA17_Chr7g0240691 39.048 210 122 4 4 209 36 243 1.21e-40 139
Msa0414740 MtrunA17_Chr7g0240551 40.097 207 119 5 14 217 16 220 1.76e-40 138
Msa0414740 MtrunA17_Chr7g0240561 37.900 219 117 6 1 209 3 212 3.12e-40 137
Msa0414740 MtrunA17_Chr4g0008791 37.383 214 127 5 1 209 1 212 3.65e-40 137
Msa0414740 MtrunA17_Chr1g0196771 40.845 213 107 8 4 206 2 205 5.52e-40 136
Msa0414740 MtrunA17_Chr5g0417011 33.333 207 130 3 6 205 8 213 6.32e-39 134
Msa0414740 MtrunA17_Chr7g0240611 36.493 211 125 5 2 209 4 208 6.96e-39 134
Msa0414740 MtrunA17_Chr1g0196721 39.524 210 122 3 5 210 2 210 8.01e-39 133
Msa0414740 MtrunA17_Chr8g0379561 39.901 203 119 2 1 201 2 203 9.31e-39 133
Msa0414740 MtrunA17_Chr7g0240511 40.291 206 114 6 4 207 6 204 1.40e-38 132
Msa0414740 MtrunA17_Chr4g0029341 38.249 217 129 3 4 216 3 218 5.83e-38 131
Msa0414740 MtrunA17_Chr7g0240581 38.614 202 119 4 3 201 5 204 6.01e-38 131
Msa0414740 MtrunA17_Chr1g0196711 39.437 213 122 5 1 209 1 210 3.41e-37 129
Msa0414740 MtrunA17_Chr7g0240671 36.585 205 125 4 6 209 5 205 6.79e-37 128
Msa0414740 MtrunA17_Chr6g0483141 38.235 204 112 6 19 213 17 215 8.78e-37 128
Msa0414740 MtrunA17_Chr1g0196691 37.379 206 119 5 12 210 35 237 3.88e-36 127
Msa0414740 MtrunA17_Chr1g0212301 38.614 202 118 5 5 201 3 203 2.02e-35 124
Msa0414740 MtrunA17_Chr7g0240661 38.462 208 123 5 3 209 5 208 6.93e-35 123
Msa0414740 MtrunA17_Chr7g0240521 41.885 191 106 5 14 201 23 211 1.52e-34 122
Msa0414740 MtrunA17_Chr8g0391631 42.593 162 80 3 1 152 17 175 1.78e-34 121
Msa0414740 MtrunA17_Chr7g0240651 36.190 210 125 5 3 209 5 208 5.91e-34 121
Msa0414740 MtrunA17_Chr2g0313561 60.294 68 27 0 48 115 1 68 1.09e-23 90.1
Msa0414740 MtrunA17_Chr7g0263221 30.303 198 121 8 16 206 37 224 8.46e-14 68.2
Msa0414740 MtrunA17_Chr5g0415421 46.575 73 37 1 29 99 11 83 7.64e-12 60.5
Msa0414740 MtrunA17_Chr1g0181861 30.247 162 92 8 53 206 77 225 3.09e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0414740 AT1G78380.1 61.972 213 81 0 4 216 3 215 3.21e-99 287
Msa0414740 AT1G17180.1 63.134 217 80 0 4 220 3 219 4.55e-98 285
Msa0414740 AT1G78370.1 60.190 211 84 0 7 217 6 216 3.51e-97 282
Msa0414740 AT1G17170.1 61.751 217 82 1 4 220 3 218 2.91e-92 270
Msa0414740 AT1G78360.1 59.259 216 87 1 6 220 5 220 8.93e-91 266
Msa0414740 AT1G78340.1 55.660 212 94 0 4 215 3 214 1.44e-86 255
Msa0414740 AT1G53680.1 55.804 224 95 3 1 220 1 224 4.26e-86 254
Msa0414740 AT1G78320.1 58.333 204 85 0 3 206 2 205 1.50e-81 243
Msa0414740 AT1G17190.1 51.835 218 105 0 1 218 1 218 5.57e-79 236
Msa0414740 AT3G43800.1 51.131 221 104 3 1 217 1 221 4.16e-74 224
Msa0414740 AT1G78320.2 50.980 204 73 1 3 206 2 178 8.45e-66 202
Msa0414740 AT1G10360.1 44.495 218 113 4 1 210 1 218 4.00e-51 166
Msa0414740 AT1G10370.1 43.119 218 116 4 1 210 1 218 4.57e-48 157
Msa0414740 AT3G09270.1 39.423 208 121 4 3 206 4 210 4.26e-46 152
Msa0414740 AT2G29420.1 40.500 200 116 3 4 201 8 206 1.75e-45 151
Msa0414740 AT1G59700.1 42.202 218 111 6 4 209 5 219 1.76e-45 151
Msa0414740 AT1G74590.1 36.937 222 124 5 6 216 8 224 1.00e-42 144
Msa0414740 AT5G62480.1 37.500 224 130 4 2 215 5 228 1.31e-42 144
Msa0414740 AT2G29440.1 38.049 205 115 4 4 201 5 204 1.35e-39 135
Msa0414740 AT1G27130.1 35.780 218 131 4 4 212 5 222 4.77e-39 134
Msa0414740 AT2G29490.1 39.130 207 112 5 3 201 5 205 7.30e-39 134
Msa0414740 AT2G29480.1 39.614 207 111 6 3 201 5 205 1.46e-38 133
Msa0414740 AT1G69930.1 35.377 212 130 3 6 210 13 224 1.96e-38 133
Msa0414740 AT1G59670.1 37.387 222 130 5 4 216 5 226 4.31e-38 132
Msa0414740 AT2G29450.1 37.321 209 119 5 1 201 1 205 5.30e-36 127
Msa0414740 AT2G29470.1 36.239 218 125 6 3 208 5 220 3.03e-35 125
Msa0414740 AT1G27140.1 34.247 219 134 4 4 212 5 223 5.78e-35 124
Msa0414740 AT2G29460.1 37.931 203 120 4 3 201 5 205 1.10e-34 123
Msa0414740 AT1G69920.1 30.455 220 140 5 2 210 31 248 1.24e-29 111
Msa0414740 AT5G62480.2 29.911 224 121 5 2 215 5 202 1.20e-23 94.4
Msa0414740 AT5G62480.3 29.911 224 120 5 2 215 5 201 1.33e-23 94.4

Find 49 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATTAAGTGATTCATATA+TGG 0.208949 3_2:-60435118 None:intergenic
TATATCATCTAACAACATTT+TGG 0.262897 3_2:+60434875 Msa0414740:five_prime_UTR
TCATAAAATATGAATTAAAT+TGG 0.270372 3_2:+60437540 Msa0414740:three_prime_UTR
AACGATCACAAGCCAAGTTT+TGG 0.283238 3_2:+60435202 Msa0414740:CDS
CCCCACCCTCACAAAATCTA+TGG 0.311159 3_2:+60437397 Msa0414740:CDS
ATATAGATATTTGTGGTGTT+TGG 0.328328 3_2:-60434857 None:intergenic
CTCTTATACCCTTCACTAGT+TGG 0.329236 3_2:+60437266 Msa0414740:CDS
AAGTCATCTCCATCAAAATA+TGG 0.337979 3_2:-60437226 None:intergenic
GTGTCCTAAGCTTGTGGCTT+GGG 0.342320 3_2:+60437333 Msa0414740:CDS
ATATTAAGTGATTCATATAT+GGG 0.369397 3_2:-60435117 None:intergenic
TTGGCTTGTGATCGTTTGTA+AGG 0.383467 3_2:-60435195 None:intergenic
TTTCCATTATGAATCAAAAC+CGG 0.387956 3_2:-60435093 None:intergenic
CTCTAAAAGCAGAGAGCTCT+TGG 0.400227 3_2:-60435046 None:intergenic
TTTACACTTACGAGATATAT+GGG 0.406047 3_2:+60437290 Msa0414740:CDS
CTTCATACAAAGTTCTTCTC+AGG 0.407955 3_2:-60437486 None:intergenic
TATAGATATTTGTGGTGTTT+GGG 0.414703 3_2:-60434856 None:intergenic
TTGGCCCAAGCCACAAGCTT+AGG 0.419595 3_2:-60437337 None:intergenic
TTGAGTACATTGATGAAGCT+TGG 0.459310 3_2:+60435142 Msa0414740:CDS
AGCTTGTGGCTTGGGCCAAA+AGG 0.465671 3_2:+60437341 Msa0414740:CDS
TTAGATGATATAGATATTTG+TGG 0.468033 3_2:-60434864 None:intergenic
AATGTAATCTCCCCAAAACT+TGG 0.487995 3_2:-60435214 None:intergenic
TTCCATTATGAATCAAAACC+GGG 0.499687 3_2:-60435092 None:intergenic
AGGAAAGGTTGAAGAACAAG+AGG 0.520776 3_2:+60437144 Msa0414740:CDS
AAGACTCTAGAAGATGAGCT+TGG 0.522791 3_2:+60437196 Msa0414740:CDS
ACTCTCATTGCATACACGCT+TGG 0.524529 3_2:-60434964 None:intergenic
AATGAGAGTGAAAATCGCTT+TGG 0.526915 3_2:+60434978 Msa0414740:CDS
ACAGCATTCGAAGGAAGCTA+TGG 0.529203 3_2:+60437119 Msa0414740:CDS
AGTGTCCTAAGCTTGTGGCT+TGG 0.547472 3_2:+60437332 Msa0414740:CDS
GGCTTGGGCCAAAAGGTGTA+TGG 0.551448 3_2:+60437348 Msa0414740:CDS
AGTGTAAAACCAACTAGTGA+AGG 0.558553 3_2:-60437275 None:intergenic
AAGGTTGAAGAACAAGAGGA+AGG 0.559445 3_2:+60437148 Msa0414740:CDS
TGATCGTTTGTAAGGGTCAG+AGG 0.563474 3_2:-60435187 None:intergenic
GAAAATCGCTTTGGAAGAGA+AGG 0.565948 3_2:+60434987 Msa0414740:CDS
TGGCTTGTGATCGTTTGTAA+GGG 0.580270 3_2:-60435194 None:intergenic
CATCTGATTATAAGCTAAGA+CGG 0.585820 3_2:+60437627 Msa0414740:three_prime_UTR
GGGTCAGAGGGCAAAAGAGA+AGG 0.589806 3_2:-60435174 None:intergenic
GAAAGAGTGTCCTAAGCTTG+TGG 0.598040 3_2:+60437327 Msa0414740:CDS
TGACTTTGGGTATGTAGATG+TGG 0.602122 3_2:+60437243 Msa0414740:CDS
GTGTAAAACCAACTAGTGAA+GGG 0.625155 3_2:-60437274 None:intergenic
GATCGTTTGTAAGGGTCAGA+GGG 0.625238 3_2:-60435186 None:intergenic
ATTCGAAGGAAGCTATGGAA+AGG 0.640495 3_2:+60437124 Msa0414740:CDS
TGTAGGTATACAGCATTCGA+AGG 0.646256 3_2:+60437110 Msa0414740:intron
ATGCAATATAAACAGAAACA+TGG 0.646292 3_2:+60437427 Msa0414740:CDS
AAGGAAGCTATGGAAAGGAA+AGG 0.650275 3_2:+60437129 Msa0414740:CDS
AAGCAAGCTACACATGGCTG+AGG 0.652900 3_2:+60434915 Msa0414740:exon
ACATACAAGCAAGCTACACA+TGG 0.655880 3_2:+60434909 Msa0414740:exon
AAAATCGCTTTGGAAGAGAA+GGG 0.661881 3_2:+60434988 Msa0414740:CDS
ACACATGGCTGAGGACAATG+TGG 0.697074 3_2:+60434924 Msa0414740:exon
GTTTGACAAGAAATAAAACG+TGG 0.702299 3_2:-60434808 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATAAAATATGAATTAAAT+TGG + chr3_2:60437540-60437559 Msa0414740:three_prime_UTR 10.0%
!! ATATTAAGTGATTCATATAT+GGG - chr3_2:60435120-60435139 None:intergenic 15.0%
!! TATATTAAGTGATTCATATA+TGG - chr3_2:60435121-60435140 None:intergenic 15.0%
!! TGACAAAAAAAAAAAAATCA+AGG + chr3_2:60435718-60435737 Msa0414740:intron 15.0%
!!! TTTGTTTTTAAATTGATTGT+AGG - chr3_2:60435750-60435769 None:intergenic 15.0%
!! TTGATGTGTTAAAATATAAT+TGG - chr3_2:60435819-60435838 None:intergenic 15.0%
!!! TATCATTTTTTTTTGTCATA+GGG - chr3_2:60436822-60436841 None:intergenic 15.0%
!!! ATATCATTTTTTTTTGTCAT+AGG - chr3_2:60436821-60436840 None:intergenic 15.0%
!! CTACTTAAAATAAACAATAA+TGG - chr3_2:60436570-60436589 None:intergenic 15.0%
!! CTACTTAAAATAAACAATAA+TGG + chr3_2:60436570-60436589 Msa0414740:intron 15.0%
!!! ATATCATTTTTTTTTGTCAT+AGG + chr3_2:60436821-60436840 Msa0414740:intron 15.0%
!!! TATCATTTTTTTTTGTCATA+GGG + chr3_2:60436822-60436841 Msa0414740:intron 15.0%
!! AAAATATGGTTCAATATTTA+TGG - chr3_2:60436880-60436899 None:intergenic 15.0%
!! TTTAAAAAAGAGTTATTCAT+AGG + chr3_2:60437053-60437072 Msa0414740:intron 15.0%
!! TTAAAAAAGAGTTATTCATA+GGG + chr3_2:60437054-60437073 Msa0414740:intron 15.0%
!!! TCTTTTAATTTAATCAAAAG+AGG - chr3_2:60437659-60437678 None:intergenic 15.0%
!! AAAGATGAAAAATGTATTAT+TGG + chr3_2:60437674-60437693 Msa0414740:three_prime_UTR 15.0%
!! TTAGATGATATAGATATTTG+TGG - chr3_2:60434867-60434886 None:intergenic 20.0%
!!! TATATCATCTAACAACATTT+TGG + chr3_2:60434875-60434894 Msa0414740:five_prime_UTR 20.0%
!!! AATTAAAACATTTTCGTGTT+TGG + chr3_2:60435420-60435439 Msa0414740:intron 20.0%
!! CACTTATTGTTCAAAATTAT+TGG + chr3_2:60435644-60435663 Msa0414740:intron 20.0%
!!! TTCTCTTTTACATGAATAAA+GGG - chr3_2:60435675-60435694 None:intergenic 20.0%
!!! ATTCTCTTTTACATGAATAA+AGG - chr3_2:60435676-60435695 None:intergenic 20.0%
!! AGAATTGCATAATAAATTCA+AGG + chr3_2:60435691-60435710 Msa0414740:intron 20.0%
!!! GTTTGATTTTCAATTTCAAA+GGG - chr3_2:60435884-60435903 None:intergenic 20.0%
!!! TGTTTGATTTTCAATTTCAA+AGG - chr3_2:60435885-60435904 None:intergenic 20.0%
!!! ATCATTTTTTTTTGTCATAG+GGG - chr3_2:60436823-60436842 None:intergenic 20.0%
!!! ACGATAATAATTTTCAACTA+GGG - chr3_2:60436792-60436811 None:intergenic 20.0%
!!! TACGATAATAATTTTCAACT+AGG - chr3_2:60436791-60436810 None:intergenic 20.0%
!!! TTGTTGTTCTTTATTTCAAA+TGG + chr3_2:60436096-60436115 Msa0414740:intron 20.0%
!!! TAAGTAGTTTTTTTTTTCTC+TGG - chr3_2:60436488-60436507 None:intergenic 20.0%
!!! TTGTTGTTCTTTATTTCAAA+TGG - chr3_2:60436096-60436115 None:intergenic 20.0%
!!! TACGATAATAATTTTCAACT+AGG + chr3_2:60436791-60436810 Msa0414740:intron 20.0%
!!! ACGATAATAATTTTCAACTA+GGG + chr3_2:60436792-60436811 Msa0414740:intron 20.0%
!!! ATCATTTTTTTTTGTCATAG+GGG + chr3_2:60436823-60436842 Msa0414740:intron 20.0%
!! ATATACTAGTTGACAAAATA+TGG - chr3_2:60436894-60436913 None:intergenic 20.0%
!! ATGGATAATAATGTAAAAGT+GGG - chr3_2:60436935-60436954 None:intergenic 20.0%
!! TATGGATAATAATGTAAAAG+TGG - chr3_2:60436936-60436955 None:intergenic 20.0%
!!! AAATACCAAAATTGACTTTA+TGG - chr3_2:60437013-60437032 None:intergenic 20.0%
! TATAGATATTTGTGGTGTTT+GGG - chr3_2:60434859-60434878 None:intergenic 25.0%
! ATATAGATATTTGTGGTGTT+TGG - chr3_2:60434860-60434879 None:intergenic 25.0%
! TTTCCATTATGAATCAAAAC+CGG - chr3_2:60435096-60435115 None:intergenic 25.0%
! CATTATGAATTCAGTAGTTT+AGG - chr3_2:60435332-60435351 None:intergenic 25.0%
!! CGATAATAATTTTCAACTAG+GGG - chr3_2:60436793-60436812 None:intergenic 25.0%
! TGTGTGTTCTTAATTTAAGT+TGG + chr3_2:60436049-60436068 Msa0414740:intron 25.0%
!!! CATTTTAGAAGTAGAACATT+GGG - chr3_2:60436602-60436621 None:intergenic 25.0%
!!! AATTAGTTGTTGCTTTTCTT+TGG + chr3_2:60436265-60436284 Msa0414740:intron 25.0%
! ACTACTTAAAATAAACAAGC+AGG + chr3_2:60436500-60436519 Msa0414740:intron 25.0%
!!! CATTTTAGAAGTAGAACATT+GGG + chr3_2:60436602-60436621 Msa0414740:intron 25.0%
! TGTGTGTTCTTAATTTAAGT+TGG - chr3_2:60436049-60436068 None:intergenic 25.0%
!! CGATAATAATTTTCAACTAG+GGG + chr3_2:60436793-60436812 Msa0414740:intron 25.0%
!! ATAAGCCATAAAGTCAATTT+TGG + chr3_2:60437005-60437024 Msa0414740:intron 25.0%
! GGTAAAAAGAAGTTTATAGA+AGG + chr3_2:60437169-60437188 Msa0414740:CDS 25.0%
!! TTTTACACTTACGAGATATA+TGG + chr3_2:60437289-60437308 Msa0414740:CDS 25.0%
! TTTACACTTACGAGATATAT+GGG + chr3_2:60437290-60437309 Msa0414740:CDS 25.0%
! ATGCAATATAAACAGAAACA+TGG + chr3_2:60437427-60437446 Msa0414740:CDS 25.0%
GTTTGACAAGAAATAAAACG+TGG - chr3_2:60434811-60434830 None:intergenic 30.0%
!!! ATGTGGTTTTGTTGGATTTT+TGG + chr3_2:60434941-60434960 Msa0414740:CDS 30.0%
TTCCATTATGAATCAAAACC+GGG - chr3_2:60435095-60435114 None:intergenic 30.0%
! TGAATTCAGTAGTTTAGGTT+TGG - chr3_2:60435327-60435346 None:intergenic 30.0%
! CTTTTACATGAATAAAGGGA+CGG - chr3_2:60435671-60435690 None:intergenic 30.0%
CAAAGTCAATTCTATATCTC+TGG + chr3_2:60435846-60435865 Msa0414740:intron 30.0%
CCAATTCAAAAGAAGAACAA+GGG - chr3_2:60436764-60436783 None:intergenic 30.0%
ACACAGAGTTGTACAAAAAA+TGG - chr3_2:60436034-60436053 None:intergenic 30.0%
!! CCATTTTAGAAGTAGAACAT+TGG - chr3_2:60436601-60436620 None:intergenic 30.0%
! CCAATGTTCTACTTCTAAAA+TGG + chr3_2:60436139-60436158 Msa0414740:intron 30.0%
! CCAATAAGAAGCACATAAAA+TGG - chr3_2:60436452-60436471 None:intergenic 30.0%
! CCATTTTATGTGCTTCTTAT+TGG + chr3_2:60436449-60436468 Msa0414740:intron 30.0%
! CCAATGTTCTACTTCTAAAA+TGG - chr3_2:60436139-60436158 None:intergenic 30.0%
!! CCATTTTAGAAGTAGAACAT+TGG + chr3_2:60436601-60436620 Msa0414740:intron 30.0%
CCAATTCAAAAGAAGAACAA+GGG + chr3_2:60436764-60436783 Msa0414740:intron 30.0%
! GTATCATGGCTTAATTTTGT+TGG + chr3_2:60437076-60437095 Msa0414740:intron 30.0%
TGTTGGATTCTAATTGATGT+AGG + chr3_2:60437093-60437112 Msa0414740:intron 30.0%
AAGTCATCTCCATCAAAATA+TGG - chr3_2:60437229-60437248 None:intergenic 30.0%
!!! TATTTTGATGGAGATGACTT+TGG + chr3_2:60437229-60437248 Msa0414740:CDS 30.0%
!! ATTTTGATGGAGATGACTTT+GGG + chr3_2:60437230-60437249 Msa0414740:CDS 30.0%
! CAAAACCATAGATTTTGTGA+GGG - chr3_2:60437405-60437424 None:intergenic 30.0%
! CTAGAATAGAGATTTTGTTG+TGG + chr3_2:60437451-60437470 Msa0414740:exon 30.0%
CATCTGATTATAAGCTAAGA+CGG + chr3_2:60437627-60437646 Msa0414740:three_prime_UTR 30.0%
AATGAGAGTGAAAATCGCTT+TGG + chr3_2:60434978-60434997 Msa0414740:CDS 35.0%
!! AAAATCGCTTTGGAAGAGAA+GGG + chr3_2:60434988-60435007 Msa0414740:CDS 35.0%
!!! ACCGGGATTTTTTTGTAAAC+CGG - chr3_2:60435078-60435097 None:intergenic 35.0%
!!! ATCCCGGTTTTGATTCATAA+TGG + chr3_2:60435090-60435109 Msa0414740:CDS 35.0%
TTGAGTACATTGATGAAGCT+TGG + chr3_2:60435142-60435161 Msa0414740:CDS 35.0%
AATGTAATCTCCCCAAAACT+TGG - chr3_2:60435217-60435236 None:intergenic 35.0%
! ATTCAGTAGTTTAGGTTTGG+AGG - chr3_2:60435324-60435343 None:intergenic 35.0%
!!! ATTTTTGTAGTGTCGACTCA+AGG + chr3_2:60435540-60435559 Msa0414740:intron 35.0%
!!! TTTTTGTAGTGTCGACTCAA+GGG + chr3_2:60435541-60435560 Msa0414740:intron 35.0%
AGAACAAGGTTGAATATACG+TGG - chr3_2:60435618-60435637 None:intergenic 35.0%
CGTATATTCAACCTTGTTCT+AGG + chr3_2:60435618-60435637 Msa0414740:intron 35.0%
AATAAGTGAGACCTAGAACA+AGG - chr3_2:60435632-60435651 None:intergenic 35.0%
! CCCTTGTTCTTCTTTTGAAT+TGG + chr3_2:60436000-60436019 Msa0414740:intron 35.0%
GCCAATTCAAAAGAAGAACA+AGG - chr3_2:60436763-60436782 None:intergenic 35.0%
!!! TTGTTGCTTTTCTTTGGCAT+AGG + chr3_2:60436271-60436290 Msa0414740:intron 35.0%
CGTACATGCAATAGAACAAA+GGG - chr3_2:60436336-60436355 None:intergenic 35.0%
TCGTACATGCAATAGAACAA+AGG - chr3_2:60436337-60436356 None:intergenic 35.0%
GTATAACTGTATGGACACTT+TGG - chr3_2:60436368-60436387 None:intergenic 35.0%
! AAGTGGAGAGTATAACTGTA+TGG - chr3_2:60436377-60436396 None:intergenic 35.0%
GCAGAGAATGGTTGAAAAAA+TGG + chr3_2:60436733-60436752 Msa0414740:intron 35.0%
GCCAATTCAAAAGAAGAACA+AGG + chr3_2:60436763-60436782 Msa0414740:intron 35.0%
! CCCTTGTTCTTCTTTTGAAT+TGG - chr3_2:60436000-60436019 None:intergenic 35.0%
! GAGTTATTCATAGGGTATCA+TGG + chr3_2:60437062-60437081 Msa0414740:intron 35.0%
!! GGAGACAAACCATATTTTGA+TGG + chr3_2:60437217-60437236 Msa0414740:CDS 35.0%
GTGTAAAACCAACTAGTGAA+GGG - chr3_2:60437277-60437296 None:intergenic 35.0%
AGTGTAAAACCAACTAGTGA+AGG - chr3_2:60437278-60437297 None:intergenic 35.0%
! CTCTTTTTCCATACACCTTT+TGG - chr3_2:60437359-60437378 None:intergenic 35.0%
! GCAAAACCATAGATTTTGTG+AGG - chr3_2:60437406-60437425 None:intergenic 35.0%
!! AGATTTTGTTGTGGATTGCA+TGG + chr3_2:60437460-60437479 Msa0414740:three_prime_UTR 35.0%
!! GATTTTGTTGTGGATTGCAT+GGG + chr3_2:60437461-60437480 Msa0414740:three_prime_UTR 35.0%
CTTCATACAAAGTTCTTCTC+AGG - chr3_2:60437489-60437508 None:intergenic 35.0%
ACATACAAGCAAGCTACACA+TGG + chr3_2:60434909-60434928 Msa0414740:exon 40.0%
!!! TGAGGACAATGTGGTTTTGT+TGG + chr3_2:60434933-60434952 Msa0414740:CDS 40.0%
!! GAAAATCGCTTTGGAAGAGA+AGG + chr3_2:60434987-60435006 Msa0414740:CDS 40.0%
!! TCTGCTTTTAGAGATGAACC+CGG + chr3_2:60435056-60435075 Msa0414740:CDS 40.0%
!!! CCGGGATTTTTTTGTAAACC+GGG - chr3_2:60435077-60435096 None:intergenic 40.0%
CCCGGTTTACAAAAAAATCC+CGG + chr3_2:60435074-60435093 Msa0414740:CDS 40.0%
! TGGCTTGTGATCGTTTGTAA+GGG - chr3_2:60435197-60435216 None:intergenic 40.0%
!! TTGGCTTGTGATCGTTTGTA+AGG - chr3_2:60435198-60435217 None:intergenic 40.0%
! AACGATCACAAGCCAAGTTT+TGG + chr3_2:60435202-60435221 Msa0414740:CDS 40.0%
! ACGATCACAAGCCAAGTTTT+GGG + chr3_2:60435203-60435222 Msa0414740:CDS 40.0%
! TTCCTGCTTGTCCTTTGAAA+TGG + chr3_2:60436196-60436215 Msa0414740:intron 40.0%
!!! ATGTTGCGGAAGTGTTTTTG+TGG + chr3_2:60436410-60436429 Msa0414740:intron 40.0%
!!! GGAAGTGTTTTTGTGGCTTA+TGG + chr3_2:60436417-60436436 Msa0414740:intron 40.0%
! TTTTTGTGGCTTATGGCTGT+CGG + chr3_2:60436424-60436443 Msa0414740:intron 40.0%
! TTCCTGCTTGTCCTTTGAAA+TGG - chr3_2:60436196-60436215 None:intergenic 40.0%
AAGAACACACAGAGTTGTAC+AGG + chr3_2:60436705-60436724 Msa0414740:intron 40.0%
! CTTTCATGTGATTGCCACTT+GGG - chr3_2:60436966-60436985 None:intergenic 40.0%
TGTAGGTATACAGCATTCGA+AGG + chr3_2:60437110-60437129 Msa0414740:intron 40.0%
ATTCGAAGGAAGCTATGGAA+AGG + chr3_2:60437124-60437143 Msa0414740:CDS 40.0%
AAGGAAGCTATGGAAAGGAA+AGG + chr3_2:60437129-60437148 Msa0414740:CDS 40.0%
AGGAAAGGTTGAAGAACAAG+AGG + chr3_2:60437144-60437163 Msa0414740:CDS 40.0%
AAGGTTGAAGAACAAGAGGA+AGG + chr3_2:60437148-60437167 Msa0414740:CDS 40.0%
! AAGACTCTAGAAGATGAGCT+TGG + chr3_2:60437196-60437215 Msa0414740:CDS 40.0%
TGACTTTGGGTATGTAGATG+TGG + chr3_2:60437243-60437262 Msa0414740:CDS 40.0%
CTCTTATACCCTTCACTAGT+TGG + chr3_2:60437266-60437285 Msa0414740:CDS 40.0%
! GTGTATGGAAAAAGAGTGTG+TGG + chr3_2:60437363-60437382 Msa0414740:CDS 40.0%
! ACCATAGATTTTGTGAGGGT+GGG - chr3_2:60437401-60437420 None:intergenic 40.0%
! AACCATAGATTTTGTGAGGG+TGG - chr3_2:60437402-60437421 None:intergenic 40.0%
ACTCTCATTGCATACACGCT+TGG - chr3_2:60434967-60434986 None:intergenic 45.0%
! CTCTAAAAGCAGAGAGCTCT+TGG - chr3_2:60435049-60435068 None:intergenic 45.0%
GATCGTTTGTAAGGGTCAGA+GGG - chr3_2:60435189-60435208 None:intergenic 45.0%
TGATCGTTTGTAAGGGTCAG+AGG - chr3_2:60435190-60435209 None:intergenic 45.0%
! CGATCACAAGCCAAGTTTTG+GGG + chr3_2:60435204-60435223 Msa0414740:CDS 45.0%
!! TCCTTTGAAATGGCGAGCAA+GGG + chr3_2:60436206-60436225 Msa0414740:intron 45.0%
ATACTCTCCACTTCGTCCAT+TGG + chr3_2:60436384-60436403 Msa0414740:intron 45.0%
ACATCAACCAATGGACGAAG+TGG - chr3_2:60436394-60436413 None:intergenic 45.0%
! TCGTCCATTGGTTGATGTTG+CGG + chr3_2:60436396-60436415 Msa0414740:intron 45.0%
ACTTCCGCAACATCAACCAA+TGG - chr3_2:60436403-60436422 None:intergenic 45.0%
! GTGCTTCTTATTGGTCTGCT+TGG + chr3_2:60436458-60436477 Msa0414740:intron 45.0%
!! TCCTTTGAAATGGCGAGCAA+GGG - chr3_2:60436206-60436225 None:intergenic 45.0%
! GTACAGGCTTTTGCAGAGAA+TGG + chr3_2:60436721-60436740 Msa0414740:intron 45.0%
ATCCATACTTCAAGCCCAAG+TGG + chr3_2:60436949-60436968 Msa0414740:intron 45.0%
CCTTTCATGTGATTGCCACT+TGG - chr3_2:60436967-60436986 None:intergenic 45.0%
CCAAGTGGCAATCACATGAA+AGG + chr3_2:60436964-60436983 Msa0414740:intron 45.0%
ACAGCATTCGAAGGAAGCTA+TGG + chr3_2:60437119-60437138 Msa0414740:CDS 45.0%
!! GAAAGAGTGTCCTAAGCTTG+TGG + chr3_2:60437327-60437346 Msa0414740:CDS 45.0%
! CCATAGATTTTGTGAGGGTG+GGG - chr3_2:60437400-60437419 None:intergenic 45.0%
!!! TTTTTAAAAAATTATATGTT+TGG - chr3_2:60437041-60437060 None:intergenic 5.0%
AAGCAAGCTACACATGGCTG+AGG + chr3_2:60434915-60434934 Msa0414740:exon 50.0%
ACACATGGCTGAGGACAATG+TGG + chr3_2:60434924-60434943 Msa0414740:exon 50.0%
CGCCATTTCAAAGGACAAGC+AGG - chr3_2:60436542-60436561 None:intergenic 50.0%
!! GTCCTTTGAAATGGCGAGCA+AGG + chr3_2:60436205-60436224 Msa0414740:intron 50.0%
!! GTCCTTTGAAATGGCGAGCA+AGG - chr3_2:60436205-60436224 None:intergenic 50.0%
CGCCATTTCAAAGGACAAGC+AGG + chr3_2:60436542-60436561 Msa0414740:intron 50.0%
! TGCCACTTGGGCTTGAAGTA+TGG - chr3_2:60436954-60436973 None:intergenic 50.0%
AGTGTCCTAAGCTTGTGGCT+TGG + chr3_2:60437332-60437351 Msa0414740:CDS 50.0%
GTGTCCTAAGCTTGTGGCTT+GGG + chr3_2:60437333-60437352 Msa0414740:CDS 50.0%
CCCCACCCTCACAAAATCTA+TGG + chr3_2:60437397-60437416 Msa0414740:CDS 50.0%
GGGTCAGAGGGCAAAAGAGA+AGG - chr3_2:60435177-60435196 None:intergenic 55.0%
GCCCTTGCTCGCCATTTCAA+AGG - chr3_2:60436533-60436552 None:intergenic 55.0%
GCCCTTGCTCGCCATTTCAA+AGG + chr3_2:60436533-60436552 Msa0414740:intron 55.0%
TTGGCCCAAGCCACAAGCTT+AGG - chr3_2:60437340-60437359 None:intergenic 55.0%
! AGCTTGTGGCTTGGGCCAAA+AGG + chr3_2:60437341-60437360 Msa0414740:CDS 55.0%
! GGCTTGGGCCAAAAGGTGTA+TGG + chr3_2:60437348-60437367 Msa0414740:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 60434793 60437721 60434793 ID=Msa0414740;Name=Msa0414740
chr3_2 mRNA 60434793 60437721 60434793 ID=Msa0414740-mRNA-1;Parent=Msa0414740;Name=Msa0414740-mRNA-1;_AED=0.16;_eAED=0.16;_QI=135|1|1|1|1|1|2|262|220
chr3_2 exon 60434793 60435245 60434793 ID=Msa0414740-mRNA-1:exon:12616;Parent=Msa0414740-mRNA-1
chr3_2 exon 60437115 60437721 60437115 ID=Msa0414740-mRNA-1:exon:12617;Parent=Msa0414740-mRNA-1
chr3_2 five_prime_UTR 60434793 60434927 60434793 ID=Msa0414740-mRNA-1:five_prime_utr;Parent=Msa0414740-mRNA-1
chr3_2 CDS 60434928 60435245 60434928 ID=Msa0414740-mRNA-1:cds;Parent=Msa0414740-mRNA-1
chr3_2 CDS 60437115 60437459 60437115 ID=Msa0414740-mRNA-1:cds;Parent=Msa0414740-mRNA-1
chr3_2 three_prime_UTR 60437460 60437721 60437460 ID=Msa0414740-mRNA-1:three_prime_utr;Parent=Msa0414740-mRNA-1
Gene Sequence

>Msa0414740

ATGGCTGAGGACAATGTGGTTTTGTTGGATTTTTGGCCAAGCGTGTATGCAATGAGAGTGAAAATCGCTTTGGAAGAGAAGGGAGTCTCATATGAGTGTAGACAAGAAGATTTTCAAGCCAAGAGCTCTCTGCTTTTAGAGATGAACCCGGTTTACAAAAAAATCCCGGTTTTGATTCATAATGGAAAACCCATATATGAATCACTTAATATAGTTGAGTACATTGATGAAGCTTGGAATCACAAACCTTCTCTTTTGCCCTCTGACCCTTACAAACGATCACAAGCCAAGTTTTGGGGAGATTACATTGACAAACATGTATACAGCATTCGAAGGAAGCTATGGAAAGGAAAGGTTGAAGAACAAGAGGAAGGTAAAAAGAAGTTTATAGAAGGCTTGAAGACTCTAGAAGATGAGCTTGGAGACAAACCATATTTTGATGGAGATGACTTTGGGTATGTAGATGTGGCTCTTATACCCTTCACTAGTTGGTTTTACACTTACGAGATATATGGGAAACTAAGCATTGAGAAAGAGTGTCCTAAGCTTGTGGCTTGGGCCAAAAGGTGTATGGAAAAAGAGTGTGTGGCAAAGTCACTTCCCCACCCTCACAAAATCTATGGTTTTGCAATGCAATATAAACAGAAACATGGACTAGAATAG

Protein sequence

>Msa0414740

MAEDNVVLLDFWPSVYAMRVKIALEEKGVSYECRQEDFQAKSSLLLEMNPVYKKIPVLIHNGKPIYESLNIVEYIDEAWNHKPSLLPSDPYKRSQAKFWGDYIDKHVYSIRRKLWKGKVEEQEEGKKKFIEGLKTLEDELGDKPYFDGDDFGYVDVALIPFTSWFYTYEIYGKLSIEKECPKLVAWAKRCMEKECVAKSLPHPHKIYGFAMQYKQKHGLE*