Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0414740 | XP_013460469.1 | 93.636 | 220 | 14 | 0 | 1 | 220 | 5 | 224 | 1.15e-148 | 422 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0414740 | sp|P25317|GSTXA_TOBAC | 67.123 | 219 | 72 | 0 | 1 | 219 | 1 | 219 | 1.11e-108 | 314 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0414740 | I3SI44 | 93.636 | 220 | 14 | 0 | 1 | 220 | 5 | 224 | 5.50e-149 | 422 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0366780 | Msa0414740 | 0.844731 | 6.303577e-59 | -8.615850e-47 |
Msa0366810 | Msa0414740 | 0.853400 | 2.450013e-61 | -8.615850e-47 |
Msa0414730 | Msa0414740 | 0.849487 | 3.133423e-60 | -8.615850e-47 |
Msa0414740 | Msa1058200 | 0.800472 | 1.418588e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0414740 | MtrunA17_Chr3g0107741 | 93.636 | 220 | 14 | 0 | 1 | 220 | 5 | 224 | 1.06e-152 | 422 |
Msa0414740 | MtrunA17_Chr3g0107731 | 89.954 | 219 | 22 | 0 | 2 | 220 | 6 | 224 | 5.70e-146 | 405 |
Msa0414740 | MtrunA17_Chr2g0312771 | 62.673 | 217 | 81 | 0 | 4 | 220 | 3 | 219 | 5.39e-101 | 291 |
Msa0414740 | MtrunA17_Chr2g0312751 | 59.908 | 217 | 87 | 0 | 4 | 220 | 3 | 219 | 5.15e-98 | 284 |
Msa0414740 | MtrunA17_Chr2g0312781 | 60.377 | 212 | 84 | 0 | 4 | 215 | 20 | 231 | 1.26e-94 | 276 |
Msa0414740 | MtrunA17_Chr2g0312731 | 59.447 | 217 | 88 | 0 | 4 | 220 | 3 | 219 | 5.89e-94 | 274 |
Msa0414740 | MtrunA17_Chr2g0312811 | 59.817 | 219 | 86 | 1 | 4 | 220 | 3 | 221 | 5.84e-92 | 269 |
Msa0414740 | MtrunA17_Chr2g0312681 | 56.682 | 217 | 94 | 0 | 4 | 220 | 3 | 219 | 6.15e-90 | 263 |
Msa0414740 | MtrunA17_Chr2g0312691 | 59.447 | 217 | 88 | 0 | 4 | 220 | 3 | 219 | 6.75e-89 | 261 |
Msa0414740 | MtrunA17_Chr8g0357211 | 54.545 | 220 | 99 | 1 | 1 | 220 | 1 | 219 | 5.53e-87 | 256 |
Msa0414740 | MtrunA17_Chr8g0357241 | 54.091 | 220 | 100 | 1 | 1 | 220 | 1 | 219 | 1.72e-86 | 254 |
Msa0414740 | MtrunA17_Chr2g0312791 | 59.361 | 219 | 87 | 2 | 4 | 220 | 3 | 221 | 1.73e-86 | 255 |
Msa0414740 | MtrunA17_Chr2g0312711 | 57.604 | 217 | 91 | 1 | 4 | 220 | 3 | 218 | 3.07e-86 | 254 |
Msa0414740 | MtrunA17_Chr2g0312721 | 55.607 | 214 | 95 | 0 | 4 | 217 | 3 | 216 | 2.77e-85 | 252 |
Msa0414740 | MtrunA17_Chr5g0433801 | 50.459 | 218 | 106 | 2 | 4 | 220 | 5 | 221 | 6.77e-75 | 225 |
Msa0414740 | MtrunA17_Chr4g0069471 | 58.791 | 182 | 72 | 2 | 3 | 183 | 23 | 202 | 3.21e-73 | 221 |
Msa0414740 | MtrunA17_Chr5g0415411 | 42.273 | 220 | 118 | 4 | 1 | 211 | 1 | 220 | 1.95e-47 | 155 |
Msa0414740 | MtrunA17_Chr8g0363751 | 38.627 | 233 | 126 | 5 | 1 | 219 | 1 | 230 | 1.77e-45 | 151 |
Msa0414740 | MtrunA17_Chr7g0240681 | 40.758 | 211 | 119 | 5 | 3 | 209 | 5 | 213 | 3.77e-45 | 150 |
Msa0414740 | MtrunA17_Chr7g0240541 | 43.367 | 196 | 105 | 6 | 14 | 206 | 16 | 208 | 3.82e-44 | 147 |
Msa0414740 | MtrunA17_Chr7g0240631 | 38.095 | 210 | 125 | 5 | 3 | 209 | 5 | 212 | 3.12e-43 | 145 |
Msa0414740 | MtrunA17_Chr7g0240641 | 38.095 | 210 | 125 | 4 | 3 | 209 | 5 | 212 | 5.13e-43 | 144 |
Msa0414740 | MtrunA17_Chr4g0008781 | 40.187 | 214 | 115 | 7 | 3 | 209 | 6 | 213 | 1.17e-42 | 143 |
Msa0414740 | MtrunA17_Chr3g0132581 | 46.746 | 169 | 89 | 1 | 1 | 169 | 1 | 168 | 1.51e-42 | 143 |
Msa0414740 | MtrunA17_Chr8g0379581 | 38.288 | 222 | 133 | 3 | 1 | 219 | 1 | 221 | 2.39e-42 | 142 |
Msa0414740 | MtrunA17_Chr1g0196661 | 39.906 | 213 | 121 | 4 | 1 | 209 | 1 | 210 | 4.56e-41 | 139 |
Msa0414740 | MtrunA17_Chr7g0240531 | 41.546 | 207 | 116 | 5 | 14 | 217 | 16 | 220 | 6.90e-41 | 139 |
Msa0414740 | MtrunA17_Chr7g0240691 | 39.048 | 210 | 122 | 4 | 4 | 209 | 36 | 243 | 1.21e-40 | 139 |
Msa0414740 | MtrunA17_Chr7g0240551 | 40.097 | 207 | 119 | 5 | 14 | 217 | 16 | 220 | 1.76e-40 | 138 |
Msa0414740 | MtrunA17_Chr7g0240561 | 37.900 | 219 | 117 | 6 | 1 | 209 | 3 | 212 | 3.12e-40 | 137 |
Msa0414740 | MtrunA17_Chr4g0008791 | 37.383 | 214 | 127 | 5 | 1 | 209 | 1 | 212 | 3.65e-40 | 137 |
Msa0414740 | MtrunA17_Chr1g0196771 | 40.845 | 213 | 107 | 8 | 4 | 206 | 2 | 205 | 5.52e-40 | 136 |
Msa0414740 | MtrunA17_Chr5g0417011 | 33.333 | 207 | 130 | 3 | 6 | 205 | 8 | 213 | 6.32e-39 | 134 |
Msa0414740 | MtrunA17_Chr7g0240611 | 36.493 | 211 | 125 | 5 | 2 | 209 | 4 | 208 | 6.96e-39 | 134 |
Msa0414740 | MtrunA17_Chr1g0196721 | 39.524 | 210 | 122 | 3 | 5 | 210 | 2 | 210 | 8.01e-39 | 133 |
Msa0414740 | MtrunA17_Chr8g0379561 | 39.901 | 203 | 119 | 2 | 1 | 201 | 2 | 203 | 9.31e-39 | 133 |
Msa0414740 | MtrunA17_Chr7g0240511 | 40.291 | 206 | 114 | 6 | 4 | 207 | 6 | 204 | 1.40e-38 | 132 |
Msa0414740 | MtrunA17_Chr4g0029341 | 38.249 | 217 | 129 | 3 | 4 | 216 | 3 | 218 | 5.83e-38 | 131 |
Msa0414740 | MtrunA17_Chr7g0240581 | 38.614 | 202 | 119 | 4 | 3 | 201 | 5 | 204 | 6.01e-38 | 131 |
Msa0414740 | MtrunA17_Chr1g0196711 | 39.437 | 213 | 122 | 5 | 1 | 209 | 1 | 210 | 3.41e-37 | 129 |
Msa0414740 | MtrunA17_Chr7g0240671 | 36.585 | 205 | 125 | 4 | 6 | 209 | 5 | 205 | 6.79e-37 | 128 |
Msa0414740 | MtrunA17_Chr6g0483141 | 38.235 | 204 | 112 | 6 | 19 | 213 | 17 | 215 | 8.78e-37 | 128 |
Msa0414740 | MtrunA17_Chr1g0196691 | 37.379 | 206 | 119 | 5 | 12 | 210 | 35 | 237 | 3.88e-36 | 127 |
Msa0414740 | MtrunA17_Chr1g0212301 | 38.614 | 202 | 118 | 5 | 5 | 201 | 3 | 203 | 2.02e-35 | 124 |
Msa0414740 | MtrunA17_Chr7g0240661 | 38.462 | 208 | 123 | 5 | 3 | 209 | 5 | 208 | 6.93e-35 | 123 |
Msa0414740 | MtrunA17_Chr7g0240521 | 41.885 | 191 | 106 | 5 | 14 | 201 | 23 | 211 | 1.52e-34 | 122 |
Msa0414740 | MtrunA17_Chr8g0391631 | 42.593 | 162 | 80 | 3 | 1 | 152 | 17 | 175 | 1.78e-34 | 121 |
Msa0414740 | MtrunA17_Chr7g0240651 | 36.190 | 210 | 125 | 5 | 3 | 209 | 5 | 208 | 5.91e-34 | 121 |
Msa0414740 | MtrunA17_Chr2g0313561 | 60.294 | 68 | 27 | 0 | 48 | 115 | 1 | 68 | 1.09e-23 | 90.1 |
Msa0414740 | MtrunA17_Chr7g0263221 | 30.303 | 198 | 121 | 8 | 16 | 206 | 37 | 224 | 8.46e-14 | 68.2 |
Msa0414740 | MtrunA17_Chr5g0415421 | 46.575 | 73 | 37 | 1 | 29 | 99 | 11 | 83 | 7.64e-12 | 60.5 |
Msa0414740 | MtrunA17_Chr1g0181861 | 30.247 | 162 | 92 | 8 | 53 | 206 | 77 | 225 | 3.09e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0414740 | AT1G78380.1 | 61.972 | 213 | 81 | 0 | 4 | 216 | 3 | 215 | 3.21e-99 | 287 |
Msa0414740 | AT1G17180.1 | 63.134 | 217 | 80 | 0 | 4 | 220 | 3 | 219 | 4.55e-98 | 285 |
Msa0414740 | AT1G78370.1 | 60.190 | 211 | 84 | 0 | 7 | 217 | 6 | 216 | 3.51e-97 | 282 |
Msa0414740 | AT1G17170.1 | 61.751 | 217 | 82 | 1 | 4 | 220 | 3 | 218 | 2.91e-92 | 270 |
Msa0414740 | AT1G78360.1 | 59.259 | 216 | 87 | 1 | 6 | 220 | 5 | 220 | 8.93e-91 | 266 |
Msa0414740 | AT1G78340.1 | 55.660 | 212 | 94 | 0 | 4 | 215 | 3 | 214 | 1.44e-86 | 255 |
Msa0414740 | AT1G53680.1 | 55.804 | 224 | 95 | 3 | 1 | 220 | 1 | 224 | 4.26e-86 | 254 |
Msa0414740 | AT1G78320.1 | 58.333 | 204 | 85 | 0 | 3 | 206 | 2 | 205 | 1.50e-81 | 243 |
Msa0414740 | AT1G17190.1 | 51.835 | 218 | 105 | 0 | 1 | 218 | 1 | 218 | 5.57e-79 | 236 |
Msa0414740 | AT3G43800.1 | 51.131 | 221 | 104 | 3 | 1 | 217 | 1 | 221 | 4.16e-74 | 224 |
Msa0414740 | AT1G78320.2 | 50.980 | 204 | 73 | 1 | 3 | 206 | 2 | 178 | 8.45e-66 | 202 |
Msa0414740 | AT1G10360.1 | 44.495 | 218 | 113 | 4 | 1 | 210 | 1 | 218 | 4.00e-51 | 166 |
Msa0414740 | AT1G10370.1 | 43.119 | 218 | 116 | 4 | 1 | 210 | 1 | 218 | 4.57e-48 | 157 |
Msa0414740 | AT3G09270.1 | 39.423 | 208 | 121 | 4 | 3 | 206 | 4 | 210 | 4.26e-46 | 152 |
Msa0414740 | AT2G29420.1 | 40.500 | 200 | 116 | 3 | 4 | 201 | 8 | 206 | 1.75e-45 | 151 |
Msa0414740 | AT1G59700.1 | 42.202 | 218 | 111 | 6 | 4 | 209 | 5 | 219 | 1.76e-45 | 151 |
Msa0414740 | AT1G74590.1 | 36.937 | 222 | 124 | 5 | 6 | 216 | 8 | 224 | 1.00e-42 | 144 |
Msa0414740 | AT5G62480.1 | 37.500 | 224 | 130 | 4 | 2 | 215 | 5 | 228 | 1.31e-42 | 144 |
Msa0414740 | AT2G29440.1 | 38.049 | 205 | 115 | 4 | 4 | 201 | 5 | 204 | 1.35e-39 | 135 |
Msa0414740 | AT1G27130.1 | 35.780 | 218 | 131 | 4 | 4 | 212 | 5 | 222 | 4.77e-39 | 134 |
Msa0414740 | AT2G29490.1 | 39.130 | 207 | 112 | 5 | 3 | 201 | 5 | 205 | 7.30e-39 | 134 |
Msa0414740 | AT2G29480.1 | 39.614 | 207 | 111 | 6 | 3 | 201 | 5 | 205 | 1.46e-38 | 133 |
Msa0414740 | AT1G69930.1 | 35.377 | 212 | 130 | 3 | 6 | 210 | 13 | 224 | 1.96e-38 | 133 |
Msa0414740 | AT1G59670.1 | 37.387 | 222 | 130 | 5 | 4 | 216 | 5 | 226 | 4.31e-38 | 132 |
Msa0414740 | AT2G29450.1 | 37.321 | 209 | 119 | 5 | 1 | 201 | 1 | 205 | 5.30e-36 | 127 |
Msa0414740 | AT2G29470.1 | 36.239 | 218 | 125 | 6 | 3 | 208 | 5 | 220 | 3.03e-35 | 125 |
Msa0414740 | AT1G27140.1 | 34.247 | 219 | 134 | 4 | 4 | 212 | 5 | 223 | 5.78e-35 | 124 |
Msa0414740 | AT2G29460.1 | 37.931 | 203 | 120 | 4 | 3 | 201 | 5 | 205 | 1.10e-34 | 123 |
Msa0414740 | AT1G69920.1 | 30.455 | 220 | 140 | 5 | 2 | 210 | 31 | 248 | 1.24e-29 | 111 |
Msa0414740 | AT5G62480.2 | 29.911 | 224 | 121 | 5 | 2 | 215 | 5 | 202 | 1.20e-23 | 94.4 |
Msa0414740 | AT5G62480.3 | 29.911 | 224 | 120 | 5 | 2 | 215 | 5 | 201 | 1.33e-23 | 94.4 |
Find 49 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATATTAAGTGATTCATATA+TGG | 0.208949 | 3_2:-60435118 | None:intergenic |
TATATCATCTAACAACATTT+TGG | 0.262897 | 3_2:+60434875 | Msa0414740:five_prime_UTR |
TCATAAAATATGAATTAAAT+TGG | 0.270372 | 3_2:+60437540 | Msa0414740:three_prime_UTR |
AACGATCACAAGCCAAGTTT+TGG | 0.283238 | 3_2:+60435202 | Msa0414740:CDS |
CCCCACCCTCACAAAATCTA+TGG | 0.311159 | 3_2:+60437397 | Msa0414740:CDS |
ATATAGATATTTGTGGTGTT+TGG | 0.328328 | 3_2:-60434857 | None:intergenic |
CTCTTATACCCTTCACTAGT+TGG | 0.329236 | 3_2:+60437266 | Msa0414740:CDS |
AAGTCATCTCCATCAAAATA+TGG | 0.337979 | 3_2:-60437226 | None:intergenic |
GTGTCCTAAGCTTGTGGCTT+GGG | 0.342320 | 3_2:+60437333 | Msa0414740:CDS |
ATATTAAGTGATTCATATAT+GGG | 0.369397 | 3_2:-60435117 | None:intergenic |
TTGGCTTGTGATCGTTTGTA+AGG | 0.383467 | 3_2:-60435195 | None:intergenic |
TTTCCATTATGAATCAAAAC+CGG | 0.387956 | 3_2:-60435093 | None:intergenic |
CTCTAAAAGCAGAGAGCTCT+TGG | 0.400227 | 3_2:-60435046 | None:intergenic |
TTTACACTTACGAGATATAT+GGG | 0.406047 | 3_2:+60437290 | Msa0414740:CDS |
CTTCATACAAAGTTCTTCTC+AGG | 0.407955 | 3_2:-60437486 | None:intergenic |
TATAGATATTTGTGGTGTTT+GGG | 0.414703 | 3_2:-60434856 | None:intergenic |
TTGGCCCAAGCCACAAGCTT+AGG | 0.419595 | 3_2:-60437337 | None:intergenic |
TTGAGTACATTGATGAAGCT+TGG | 0.459310 | 3_2:+60435142 | Msa0414740:CDS |
AGCTTGTGGCTTGGGCCAAA+AGG | 0.465671 | 3_2:+60437341 | Msa0414740:CDS |
TTAGATGATATAGATATTTG+TGG | 0.468033 | 3_2:-60434864 | None:intergenic |
AATGTAATCTCCCCAAAACT+TGG | 0.487995 | 3_2:-60435214 | None:intergenic |
TTCCATTATGAATCAAAACC+GGG | 0.499687 | 3_2:-60435092 | None:intergenic |
AGGAAAGGTTGAAGAACAAG+AGG | 0.520776 | 3_2:+60437144 | Msa0414740:CDS |
AAGACTCTAGAAGATGAGCT+TGG | 0.522791 | 3_2:+60437196 | Msa0414740:CDS |
ACTCTCATTGCATACACGCT+TGG | 0.524529 | 3_2:-60434964 | None:intergenic |
AATGAGAGTGAAAATCGCTT+TGG | 0.526915 | 3_2:+60434978 | Msa0414740:CDS |
ACAGCATTCGAAGGAAGCTA+TGG | 0.529203 | 3_2:+60437119 | Msa0414740:CDS |
AGTGTCCTAAGCTTGTGGCT+TGG | 0.547472 | 3_2:+60437332 | Msa0414740:CDS |
GGCTTGGGCCAAAAGGTGTA+TGG | 0.551448 | 3_2:+60437348 | Msa0414740:CDS |
AGTGTAAAACCAACTAGTGA+AGG | 0.558553 | 3_2:-60437275 | None:intergenic |
AAGGTTGAAGAACAAGAGGA+AGG | 0.559445 | 3_2:+60437148 | Msa0414740:CDS |
TGATCGTTTGTAAGGGTCAG+AGG | 0.563474 | 3_2:-60435187 | None:intergenic |
GAAAATCGCTTTGGAAGAGA+AGG | 0.565948 | 3_2:+60434987 | Msa0414740:CDS |
TGGCTTGTGATCGTTTGTAA+GGG | 0.580270 | 3_2:-60435194 | None:intergenic |
CATCTGATTATAAGCTAAGA+CGG | 0.585820 | 3_2:+60437627 | Msa0414740:three_prime_UTR |
GGGTCAGAGGGCAAAAGAGA+AGG | 0.589806 | 3_2:-60435174 | None:intergenic |
GAAAGAGTGTCCTAAGCTTG+TGG | 0.598040 | 3_2:+60437327 | Msa0414740:CDS |
TGACTTTGGGTATGTAGATG+TGG | 0.602122 | 3_2:+60437243 | Msa0414740:CDS |
GTGTAAAACCAACTAGTGAA+GGG | 0.625155 | 3_2:-60437274 | None:intergenic |
GATCGTTTGTAAGGGTCAGA+GGG | 0.625238 | 3_2:-60435186 | None:intergenic |
ATTCGAAGGAAGCTATGGAA+AGG | 0.640495 | 3_2:+60437124 | Msa0414740:CDS |
TGTAGGTATACAGCATTCGA+AGG | 0.646256 | 3_2:+60437110 | Msa0414740:intron |
ATGCAATATAAACAGAAACA+TGG | 0.646292 | 3_2:+60437427 | Msa0414740:CDS |
AAGGAAGCTATGGAAAGGAA+AGG | 0.650275 | 3_2:+60437129 | Msa0414740:CDS |
AAGCAAGCTACACATGGCTG+AGG | 0.652900 | 3_2:+60434915 | Msa0414740:exon |
ACATACAAGCAAGCTACACA+TGG | 0.655880 | 3_2:+60434909 | Msa0414740:exon |
AAAATCGCTTTGGAAGAGAA+GGG | 0.661881 | 3_2:+60434988 | Msa0414740:CDS |
ACACATGGCTGAGGACAATG+TGG | 0.697074 | 3_2:+60434924 | Msa0414740:exon |
GTTTGACAAGAAATAAAACG+TGG | 0.702299 | 3_2:-60434808 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TCATAAAATATGAATTAAAT+TGG | + | chr3_2:60437540-60437559 | Msa0414740:three_prime_UTR | 10.0% |
!! | ATATTAAGTGATTCATATAT+GGG | - | chr3_2:60435120-60435139 | None:intergenic | 15.0% |
!! | TATATTAAGTGATTCATATA+TGG | - | chr3_2:60435121-60435140 | None:intergenic | 15.0% |
!! | TGACAAAAAAAAAAAAATCA+AGG | + | chr3_2:60435718-60435737 | Msa0414740:intron | 15.0% |
!!! | TTTGTTTTTAAATTGATTGT+AGG | - | chr3_2:60435750-60435769 | None:intergenic | 15.0% |
!! | TTGATGTGTTAAAATATAAT+TGG | - | chr3_2:60435819-60435838 | None:intergenic | 15.0% |
!!! | TATCATTTTTTTTTGTCATA+GGG | - | chr3_2:60436822-60436841 | None:intergenic | 15.0% |
!!! | ATATCATTTTTTTTTGTCAT+AGG | - | chr3_2:60436821-60436840 | None:intergenic | 15.0% |
!! | CTACTTAAAATAAACAATAA+TGG | - | chr3_2:60436570-60436589 | None:intergenic | 15.0% |
!! | CTACTTAAAATAAACAATAA+TGG | + | chr3_2:60436570-60436589 | Msa0414740:intron | 15.0% |
!!! | ATATCATTTTTTTTTGTCAT+AGG | + | chr3_2:60436821-60436840 | Msa0414740:intron | 15.0% |
!!! | TATCATTTTTTTTTGTCATA+GGG | + | chr3_2:60436822-60436841 | Msa0414740:intron | 15.0% |
!! | AAAATATGGTTCAATATTTA+TGG | - | chr3_2:60436880-60436899 | None:intergenic | 15.0% |
!! | TTTAAAAAAGAGTTATTCAT+AGG | + | chr3_2:60437053-60437072 | Msa0414740:intron | 15.0% |
!! | TTAAAAAAGAGTTATTCATA+GGG | + | chr3_2:60437054-60437073 | Msa0414740:intron | 15.0% |
!!! | TCTTTTAATTTAATCAAAAG+AGG | - | chr3_2:60437659-60437678 | None:intergenic | 15.0% |
!! | AAAGATGAAAAATGTATTAT+TGG | + | chr3_2:60437674-60437693 | Msa0414740:three_prime_UTR | 15.0% |
!! | TTAGATGATATAGATATTTG+TGG | - | chr3_2:60434867-60434886 | None:intergenic | 20.0% |
!!! | TATATCATCTAACAACATTT+TGG | + | chr3_2:60434875-60434894 | Msa0414740:five_prime_UTR | 20.0% |
!!! | AATTAAAACATTTTCGTGTT+TGG | + | chr3_2:60435420-60435439 | Msa0414740:intron | 20.0% |
!! | CACTTATTGTTCAAAATTAT+TGG | + | chr3_2:60435644-60435663 | Msa0414740:intron | 20.0% |
!!! | TTCTCTTTTACATGAATAAA+GGG | - | chr3_2:60435675-60435694 | None:intergenic | 20.0% |
!!! | ATTCTCTTTTACATGAATAA+AGG | - | chr3_2:60435676-60435695 | None:intergenic | 20.0% |
!! | AGAATTGCATAATAAATTCA+AGG | + | chr3_2:60435691-60435710 | Msa0414740:intron | 20.0% |
!!! | GTTTGATTTTCAATTTCAAA+GGG | - | chr3_2:60435884-60435903 | None:intergenic | 20.0% |
!!! | TGTTTGATTTTCAATTTCAA+AGG | - | chr3_2:60435885-60435904 | None:intergenic | 20.0% |
!!! | ATCATTTTTTTTTGTCATAG+GGG | - | chr3_2:60436823-60436842 | None:intergenic | 20.0% |
!!! | ACGATAATAATTTTCAACTA+GGG | - | chr3_2:60436792-60436811 | None:intergenic | 20.0% |
!!! | TACGATAATAATTTTCAACT+AGG | - | chr3_2:60436791-60436810 | None:intergenic | 20.0% |
!!! | TTGTTGTTCTTTATTTCAAA+TGG | + | chr3_2:60436096-60436115 | Msa0414740:intron | 20.0% |
!!! | TAAGTAGTTTTTTTTTTCTC+TGG | - | chr3_2:60436488-60436507 | None:intergenic | 20.0% |
!!! | TTGTTGTTCTTTATTTCAAA+TGG | - | chr3_2:60436096-60436115 | None:intergenic | 20.0% |
!!! | TACGATAATAATTTTCAACT+AGG | + | chr3_2:60436791-60436810 | Msa0414740:intron | 20.0% |
!!! | ACGATAATAATTTTCAACTA+GGG | + | chr3_2:60436792-60436811 | Msa0414740:intron | 20.0% |
!!! | ATCATTTTTTTTTGTCATAG+GGG | + | chr3_2:60436823-60436842 | Msa0414740:intron | 20.0% |
!! | ATATACTAGTTGACAAAATA+TGG | - | chr3_2:60436894-60436913 | None:intergenic | 20.0% |
!! | ATGGATAATAATGTAAAAGT+GGG | - | chr3_2:60436935-60436954 | None:intergenic | 20.0% |
!! | TATGGATAATAATGTAAAAG+TGG | - | chr3_2:60436936-60436955 | None:intergenic | 20.0% |
!!! | AAATACCAAAATTGACTTTA+TGG | - | chr3_2:60437013-60437032 | None:intergenic | 20.0% |
! | TATAGATATTTGTGGTGTTT+GGG | - | chr3_2:60434859-60434878 | None:intergenic | 25.0% |
! | ATATAGATATTTGTGGTGTT+TGG | - | chr3_2:60434860-60434879 | None:intergenic | 25.0% |
! | TTTCCATTATGAATCAAAAC+CGG | - | chr3_2:60435096-60435115 | None:intergenic | 25.0% |
! | CATTATGAATTCAGTAGTTT+AGG | - | chr3_2:60435332-60435351 | None:intergenic | 25.0% |
!! | CGATAATAATTTTCAACTAG+GGG | - | chr3_2:60436793-60436812 | None:intergenic | 25.0% |
! | TGTGTGTTCTTAATTTAAGT+TGG | + | chr3_2:60436049-60436068 | Msa0414740:intron | 25.0% |
!!! | CATTTTAGAAGTAGAACATT+GGG | - | chr3_2:60436602-60436621 | None:intergenic | 25.0% |
!!! | AATTAGTTGTTGCTTTTCTT+TGG | + | chr3_2:60436265-60436284 | Msa0414740:intron | 25.0% |
! | ACTACTTAAAATAAACAAGC+AGG | + | chr3_2:60436500-60436519 | Msa0414740:intron | 25.0% |
!!! | CATTTTAGAAGTAGAACATT+GGG | + | chr3_2:60436602-60436621 | Msa0414740:intron | 25.0% |
! | TGTGTGTTCTTAATTTAAGT+TGG | - | chr3_2:60436049-60436068 | None:intergenic | 25.0% |
!! | CGATAATAATTTTCAACTAG+GGG | + | chr3_2:60436793-60436812 | Msa0414740:intron | 25.0% |
!! | ATAAGCCATAAAGTCAATTT+TGG | + | chr3_2:60437005-60437024 | Msa0414740:intron | 25.0% |
! | GGTAAAAAGAAGTTTATAGA+AGG | + | chr3_2:60437169-60437188 | Msa0414740:CDS | 25.0% |
!! | TTTTACACTTACGAGATATA+TGG | + | chr3_2:60437289-60437308 | Msa0414740:CDS | 25.0% |
! | TTTACACTTACGAGATATAT+GGG | + | chr3_2:60437290-60437309 | Msa0414740:CDS | 25.0% |
! | ATGCAATATAAACAGAAACA+TGG | + | chr3_2:60437427-60437446 | Msa0414740:CDS | 25.0% |
GTTTGACAAGAAATAAAACG+TGG | - | chr3_2:60434811-60434830 | None:intergenic | 30.0% | |
!!! | ATGTGGTTTTGTTGGATTTT+TGG | + | chr3_2:60434941-60434960 | Msa0414740:CDS | 30.0% |
TTCCATTATGAATCAAAACC+GGG | - | chr3_2:60435095-60435114 | None:intergenic | 30.0% | |
! | TGAATTCAGTAGTTTAGGTT+TGG | - | chr3_2:60435327-60435346 | None:intergenic | 30.0% |
! | CTTTTACATGAATAAAGGGA+CGG | - | chr3_2:60435671-60435690 | None:intergenic | 30.0% |
CAAAGTCAATTCTATATCTC+TGG | + | chr3_2:60435846-60435865 | Msa0414740:intron | 30.0% | |
CCAATTCAAAAGAAGAACAA+GGG | - | chr3_2:60436764-60436783 | None:intergenic | 30.0% | |
ACACAGAGTTGTACAAAAAA+TGG | - | chr3_2:60436034-60436053 | None:intergenic | 30.0% | |
!! | CCATTTTAGAAGTAGAACAT+TGG | - | chr3_2:60436601-60436620 | None:intergenic | 30.0% |
! | CCAATGTTCTACTTCTAAAA+TGG | + | chr3_2:60436139-60436158 | Msa0414740:intron | 30.0% |
! | CCAATAAGAAGCACATAAAA+TGG | - | chr3_2:60436452-60436471 | None:intergenic | 30.0% |
! | CCATTTTATGTGCTTCTTAT+TGG | + | chr3_2:60436449-60436468 | Msa0414740:intron | 30.0% |
! | CCAATGTTCTACTTCTAAAA+TGG | - | chr3_2:60436139-60436158 | None:intergenic | 30.0% |
!! | CCATTTTAGAAGTAGAACAT+TGG | + | chr3_2:60436601-60436620 | Msa0414740:intron | 30.0% |
CCAATTCAAAAGAAGAACAA+GGG | + | chr3_2:60436764-60436783 | Msa0414740:intron | 30.0% | |
! | GTATCATGGCTTAATTTTGT+TGG | + | chr3_2:60437076-60437095 | Msa0414740:intron | 30.0% |
TGTTGGATTCTAATTGATGT+AGG | + | chr3_2:60437093-60437112 | Msa0414740:intron | 30.0% | |
AAGTCATCTCCATCAAAATA+TGG | - | chr3_2:60437229-60437248 | None:intergenic | 30.0% | |
!!! | TATTTTGATGGAGATGACTT+TGG | + | chr3_2:60437229-60437248 | Msa0414740:CDS | 30.0% |
!! | ATTTTGATGGAGATGACTTT+GGG | + | chr3_2:60437230-60437249 | Msa0414740:CDS | 30.0% |
! | CAAAACCATAGATTTTGTGA+GGG | - | chr3_2:60437405-60437424 | None:intergenic | 30.0% |
! | CTAGAATAGAGATTTTGTTG+TGG | + | chr3_2:60437451-60437470 | Msa0414740:exon | 30.0% |
CATCTGATTATAAGCTAAGA+CGG | + | chr3_2:60437627-60437646 | Msa0414740:three_prime_UTR | 30.0% | |
AATGAGAGTGAAAATCGCTT+TGG | + | chr3_2:60434978-60434997 | Msa0414740:CDS | 35.0% | |
!! | AAAATCGCTTTGGAAGAGAA+GGG | + | chr3_2:60434988-60435007 | Msa0414740:CDS | 35.0% |
!!! | ACCGGGATTTTTTTGTAAAC+CGG | - | chr3_2:60435078-60435097 | None:intergenic | 35.0% |
!!! | ATCCCGGTTTTGATTCATAA+TGG | + | chr3_2:60435090-60435109 | Msa0414740:CDS | 35.0% |
TTGAGTACATTGATGAAGCT+TGG | + | chr3_2:60435142-60435161 | Msa0414740:CDS | 35.0% | |
AATGTAATCTCCCCAAAACT+TGG | - | chr3_2:60435217-60435236 | None:intergenic | 35.0% | |
! | ATTCAGTAGTTTAGGTTTGG+AGG | - | chr3_2:60435324-60435343 | None:intergenic | 35.0% |
!!! | ATTTTTGTAGTGTCGACTCA+AGG | + | chr3_2:60435540-60435559 | Msa0414740:intron | 35.0% |
!!! | TTTTTGTAGTGTCGACTCAA+GGG | + | chr3_2:60435541-60435560 | Msa0414740:intron | 35.0% |
AGAACAAGGTTGAATATACG+TGG | - | chr3_2:60435618-60435637 | None:intergenic | 35.0% | |
CGTATATTCAACCTTGTTCT+AGG | + | chr3_2:60435618-60435637 | Msa0414740:intron | 35.0% | |
AATAAGTGAGACCTAGAACA+AGG | - | chr3_2:60435632-60435651 | None:intergenic | 35.0% | |
! | CCCTTGTTCTTCTTTTGAAT+TGG | + | chr3_2:60436000-60436019 | Msa0414740:intron | 35.0% |
GCCAATTCAAAAGAAGAACA+AGG | - | chr3_2:60436763-60436782 | None:intergenic | 35.0% | |
!!! | TTGTTGCTTTTCTTTGGCAT+AGG | + | chr3_2:60436271-60436290 | Msa0414740:intron | 35.0% |
CGTACATGCAATAGAACAAA+GGG | - | chr3_2:60436336-60436355 | None:intergenic | 35.0% | |
TCGTACATGCAATAGAACAA+AGG | - | chr3_2:60436337-60436356 | None:intergenic | 35.0% | |
GTATAACTGTATGGACACTT+TGG | - | chr3_2:60436368-60436387 | None:intergenic | 35.0% | |
! | AAGTGGAGAGTATAACTGTA+TGG | - | chr3_2:60436377-60436396 | None:intergenic | 35.0% |
GCAGAGAATGGTTGAAAAAA+TGG | + | chr3_2:60436733-60436752 | Msa0414740:intron | 35.0% | |
GCCAATTCAAAAGAAGAACA+AGG | + | chr3_2:60436763-60436782 | Msa0414740:intron | 35.0% | |
! | CCCTTGTTCTTCTTTTGAAT+TGG | - | chr3_2:60436000-60436019 | None:intergenic | 35.0% |
! | GAGTTATTCATAGGGTATCA+TGG | + | chr3_2:60437062-60437081 | Msa0414740:intron | 35.0% |
!! | GGAGACAAACCATATTTTGA+TGG | + | chr3_2:60437217-60437236 | Msa0414740:CDS | 35.0% |
GTGTAAAACCAACTAGTGAA+GGG | - | chr3_2:60437277-60437296 | None:intergenic | 35.0% | |
AGTGTAAAACCAACTAGTGA+AGG | - | chr3_2:60437278-60437297 | None:intergenic | 35.0% | |
! | CTCTTTTTCCATACACCTTT+TGG | - | chr3_2:60437359-60437378 | None:intergenic | 35.0% |
! | GCAAAACCATAGATTTTGTG+AGG | - | chr3_2:60437406-60437425 | None:intergenic | 35.0% |
!! | AGATTTTGTTGTGGATTGCA+TGG | + | chr3_2:60437460-60437479 | Msa0414740:three_prime_UTR | 35.0% |
!! | GATTTTGTTGTGGATTGCAT+GGG | + | chr3_2:60437461-60437480 | Msa0414740:three_prime_UTR | 35.0% |
CTTCATACAAAGTTCTTCTC+AGG | - | chr3_2:60437489-60437508 | None:intergenic | 35.0% | |
ACATACAAGCAAGCTACACA+TGG | + | chr3_2:60434909-60434928 | Msa0414740:exon | 40.0% | |
!!! | TGAGGACAATGTGGTTTTGT+TGG | + | chr3_2:60434933-60434952 | Msa0414740:CDS | 40.0% |
!! | GAAAATCGCTTTGGAAGAGA+AGG | + | chr3_2:60434987-60435006 | Msa0414740:CDS | 40.0% |
!! | TCTGCTTTTAGAGATGAACC+CGG | + | chr3_2:60435056-60435075 | Msa0414740:CDS | 40.0% |
!!! | CCGGGATTTTTTTGTAAACC+GGG | - | chr3_2:60435077-60435096 | None:intergenic | 40.0% |
CCCGGTTTACAAAAAAATCC+CGG | + | chr3_2:60435074-60435093 | Msa0414740:CDS | 40.0% | |
! | TGGCTTGTGATCGTTTGTAA+GGG | - | chr3_2:60435197-60435216 | None:intergenic | 40.0% |
!! | TTGGCTTGTGATCGTTTGTA+AGG | - | chr3_2:60435198-60435217 | None:intergenic | 40.0% |
! | AACGATCACAAGCCAAGTTT+TGG | + | chr3_2:60435202-60435221 | Msa0414740:CDS | 40.0% |
! | ACGATCACAAGCCAAGTTTT+GGG | + | chr3_2:60435203-60435222 | Msa0414740:CDS | 40.0% |
! | TTCCTGCTTGTCCTTTGAAA+TGG | + | chr3_2:60436196-60436215 | Msa0414740:intron | 40.0% |
!!! | ATGTTGCGGAAGTGTTTTTG+TGG | + | chr3_2:60436410-60436429 | Msa0414740:intron | 40.0% |
!!! | GGAAGTGTTTTTGTGGCTTA+TGG | + | chr3_2:60436417-60436436 | Msa0414740:intron | 40.0% |
! | TTTTTGTGGCTTATGGCTGT+CGG | + | chr3_2:60436424-60436443 | Msa0414740:intron | 40.0% |
! | TTCCTGCTTGTCCTTTGAAA+TGG | - | chr3_2:60436196-60436215 | None:intergenic | 40.0% |
AAGAACACACAGAGTTGTAC+AGG | + | chr3_2:60436705-60436724 | Msa0414740:intron | 40.0% | |
! | CTTTCATGTGATTGCCACTT+GGG | - | chr3_2:60436966-60436985 | None:intergenic | 40.0% |
TGTAGGTATACAGCATTCGA+AGG | + | chr3_2:60437110-60437129 | Msa0414740:intron | 40.0% | |
ATTCGAAGGAAGCTATGGAA+AGG | + | chr3_2:60437124-60437143 | Msa0414740:CDS | 40.0% | |
AAGGAAGCTATGGAAAGGAA+AGG | + | chr3_2:60437129-60437148 | Msa0414740:CDS | 40.0% | |
AGGAAAGGTTGAAGAACAAG+AGG | + | chr3_2:60437144-60437163 | Msa0414740:CDS | 40.0% | |
AAGGTTGAAGAACAAGAGGA+AGG | + | chr3_2:60437148-60437167 | Msa0414740:CDS | 40.0% | |
! | AAGACTCTAGAAGATGAGCT+TGG | + | chr3_2:60437196-60437215 | Msa0414740:CDS | 40.0% |
TGACTTTGGGTATGTAGATG+TGG | + | chr3_2:60437243-60437262 | Msa0414740:CDS | 40.0% | |
CTCTTATACCCTTCACTAGT+TGG | + | chr3_2:60437266-60437285 | Msa0414740:CDS | 40.0% | |
! | GTGTATGGAAAAAGAGTGTG+TGG | + | chr3_2:60437363-60437382 | Msa0414740:CDS | 40.0% |
! | ACCATAGATTTTGTGAGGGT+GGG | - | chr3_2:60437401-60437420 | None:intergenic | 40.0% |
! | AACCATAGATTTTGTGAGGG+TGG | - | chr3_2:60437402-60437421 | None:intergenic | 40.0% |
ACTCTCATTGCATACACGCT+TGG | - | chr3_2:60434967-60434986 | None:intergenic | 45.0% | |
! | CTCTAAAAGCAGAGAGCTCT+TGG | - | chr3_2:60435049-60435068 | None:intergenic | 45.0% |
GATCGTTTGTAAGGGTCAGA+GGG | - | chr3_2:60435189-60435208 | None:intergenic | 45.0% | |
TGATCGTTTGTAAGGGTCAG+AGG | - | chr3_2:60435190-60435209 | None:intergenic | 45.0% | |
! | CGATCACAAGCCAAGTTTTG+GGG | + | chr3_2:60435204-60435223 | Msa0414740:CDS | 45.0% |
!! | TCCTTTGAAATGGCGAGCAA+GGG | + | chr3_2:60436206-60436225 | Msa0414740:intron | 45.0% |
ATACTCTCCACTTCGTCCAT+TGG | + | chr3_2:60436384-60436403 | Msa0414740:intron | 45.0% | |
ACATCAACCAATGGACGAAG+TGG | - | chr3_2:60436394-60436413 | None:intergenic | 45.0% | |
! | TCGTCCATTGGTTGATGTTG+CGG | + | chr3_2:60436396-60436415 | Msa0414740:intron | 45.0% |
ACTTCCGCAACATCAACCAA+TGG | - | chr3_2:60436403-60436422 | None:intergenic | 45.0% | |
! | GTGCTTCTTATTGGTCTGCT+TGG | + | chr3_2:60436458-60436477 | Msa0414740:intron | 45.0% |
!! | TCCTTTGAAATGGCGAGCAA+GGG | - | chr3_2:60436206-60436225 | None:intergenic | 45.0% |
! | GTACAGGCTTTTGCAGAGAA+TGG | + | chr3_2:60436721-60436740 | Msa0414740:intron | 45.0% |
ATCCATACTTCAAGCCCAAG+TGG | + | chr3_2:60436949-60436968 | Msa0414740:intron | 45.0% | |
CCTTTCATGTGATTGCCACT+TGG | - | chr3_2:60436967-60436986 | None:intergenic | 45.0% | |
CCAAGTGGCAATCACATGAA+AGG | + | chr3_2:60436964-60436983 | Msa0414740:intron | 45.0% | |
ACAGCATTCGAAGGAAGCTA+TGG | + | chr3_2:60437119-60437138 | Msa0414740:CDS | 45.0% | |
!! | GAAAGAGTGTCCTAAGCTTG+TGG | + | chr3_2:60437327-60437346 | Msa0414740:CDS | 45.0% |
! | CCATAGATTTTGTGAGGGTG+GGG | - | chr3_2:60437400-60437419 | None:intergenic | 45.0% |
!!! | TTTTTAAAAAATTATATGTT+TGG | - | chr3_2:60437041-60437060 | None:intergenic | 5.0% |
AAGCAAGCTACACATGGCTG+AGG | + | chr3_2:60434915-60434934 | Msa0414740:exon | 50.0% | |
ACACATGGCTGAGGACAATG+TGG | + | chr3_2:60434924-60434943 | Msa0414740:exon | 50.0% | |
CGCCATTTCAAAGGACAAGC+AGG | - | chr3_2:60436542-60436561 | None:intergenic | 50.0% | |
!! | GTCCTTTGAAATGGCGAGCA+AGG | + | chr3_2:60436205-60436224 | Msa0414740:intron | 50.0% |
!! | GTCCTTTGAAATGGCGAGCA+AGG | - | chr3_2:60436205-60436224 | None:intergenic | 50.0% |
CGCCATTTCAAAGGACAAGC+AGG | + | chr3_2:60436542-60436561 | Msa0414740:intron | 50.0% | |
! | TGCCACTTGGGCTTGAAGTA+TGG | - | chr3_2:60436954-60436973 | None:intergenic | 50.0% |
AGTGTCCTAAGCTTGTGGCT+TGG | + | chr3_2:60437332-60437351 | Msa0414740:CDS | 50.0% | |
GTGTCCTAAGCTTGTGGCTT+GGG | + | chr3_2:60437333-60437352 | Msa0414740:CDS | 50.0% | |
CCCCACCCTCACAAAATCTA+TGG | + | chr3_2:60437397-60437416 | Msa0414740:CDS | 50.0% | |
GGGTCAGAGGGCAAAAGAGA+AGG | - | chr3_2:60435177-60435196 | None:intergenic | 55.0% | |
GCCCTTGCTCGCCATTTCAA+AGG | - | chr3_2:60436533-60436552 | None:intergenic | 55.0% | |
GCCCTTGCTCGCCATTTCAA+AGG | + | chr3_2:60436533-60436552 | Msa0414740:intron | 55.0% | |
TTGGCCCAAGCCACAAGCTT+AGG | - | chr3_2:60437340-60437359 | None:intergenic | 55.0% | |
! | AGCTTGTGGCTTGGGCCAAA+AGG | + | chr3_2:60437341-60437360 | Msa0414740:CDS | 55.0% |
! | GGCTTGGGCCAAAAGGTGTA+TGG | + | chr3_2:60437348-60437367 | Msa0414740:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 60434793 | 60437721 | 60434793 | ID=Msa0414740;Name=Msa0414740 |
chr3_2 | mRNA | 60434793 | 60437721 | 60434793 | ID=Msa0414740-mRNA-1;Parent=Msa0414740;Name=Msa0414740-mRNA-1;_AED=0.16;_eAED=0.16;_QI=135|1|1|1|1|1|2|262|220 |
chr3_2 | exon | 60434793 | 60435245 | 60434793 | ID=Msa0414740-mRNA-1:exon:12616;Parent=Msa0414740-mRNA-1 |
chr3_2 | exon | 60437115 | 60437721 | 60437115 | ID=Msa0414740-mRNA-1:exon:12617;Parent=Msa0414740-mRNA-1 |
chr3_2 | five_prime_UTR | 60434793 | 60434927 | 60434793 | ID=Msa0414740-mRNA-1:five_prime_utr;Parent=Msa0414740-mRNA-1 |
chr3_2 | CDS | 60434928 | 60435245 | 60434928 | ID=Msa0414740-mRNA-1:cds;Parent=Msa0414740-mRNA-1 |
chr3_2 | CDS | 60437115 | 60437459 | 60437115 | ID=Msa0414740-mRNA-1:cds;Parent=Msa0414740-mRNA-1 |
chr3_2 | three_prime_UTR | 60437460 | 60437721 | 60437460 | ID=Msa0414740-mRNA-1:three_prime_utr;Parent=Msa0414740-mRNA-1 |
Gene Sequence |
Protein sequence |