Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366810 | XP_013460469.1 | 94.091 | 220 | 13 | 0 | 1 | 220 | 5 | 224 | 2.19e-150 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366810 | sp|P25317|GSTXA_TOBAC | 67.580 | 219 | 71 | 0 | 1 | 219 | 1 | 219 | 2.56e-110 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366810 | I3SI44 | 94.091 | 220 | 13 | 0 | 1 | 220 | 5 | 224 | 1.05e-150 | 427 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000800 | Msa0366810 | 0.810043 | 1.402725e-50 | -8.615850e-47 |
| Msa0011920 | Msa0366810 | -0.804349 | 2.254125e-49 | -8.615850e-47 |
| Msa0024490 | Msa0366810 | -0.809179 | 2.150625e-50 | -8.615850e-47 |
| Msa0027020 | Msa0366810 | -0.817656 | 2.944864e-52 | -8.615850e-47 |
| Msa0031800 | Msa0366810 | -0.804711 | 1.894341e-49 | -8.615850e-47 |
| Msa0034540 | Msa0366810 | 0.808967 | 2.386886e-50 | -8.615850e-47 |
| Msa0037720 | Msa0366810 | 0.804962 | 1.678962e-49 | -8.615850e-47 |
| Msa0039890 | Msa0366810 | 0.818712 | 1.698835e-52 | -8.615850e-47 |
| Msa0052780 | Msa0366810 | 0.834926 | 2.259924e-56 | -8.615850e-47 |
| Msa0065460 | Msa0366810 | -0.800153 | 1.647451e-48 | -8.615850e-47 |
| Msa0067370 | Msa0366810 | -0.807296 | 5.418595e-50 | -8.615850e-47 |
| Msa0074860 | Msa0366810 | -0.823741 | 1.176541e-53 | -8.615850e-47 |
| Msa0081610 | Msa0366810 | -0.806763 | 7.022749e-50 | -8.615850e-47 |
| Msa0081700 | Msa0366810 | -0.800239 | 1.582259e-48 | -8.615850e-47 |
| Msa0083240 | Msa0366810 | 0.811970 | 5.362574e-51 | -8.615850e-47 |
| Msa0087550 | Msa0366810 | 0.839433 | 1.589649e-57 | -8.615850e-47 |
| Msa0097570 | Msa0366810 | 0.826823 | 2.195787e-54 | -8.615850e-47 |
| Msa0127350 | Msa0366810 | -0.816059 | 6.720240e-52 | -8.615850e-47 |
| Msa0127910 | Msa0366810 | -0.825209 | 5.310528e-54 | -8.615850e-47 |
| Msa0129640 | Msa0366810 | 0.840366 | 9.081489e-58 | -8.615850e-47 |
| Msa0134270 | Msa0366810 | 0.836448 | 9.301086e-57 | -8.615850e-47 |
| Msa0143640 | Msa0366810 | 0.806177 | 9.335629e-50 | -8.615850e-47 |
| Msa0145430 | Msa0366810 | 0.837124 | 6.253822e-57 | -8.615850e-47 |
| Msa0150620 | Msa0366810 | 0.801856 | 7.391708e-49 | -8.615850e-47 |
| Msa0159240 | Msa0366810 | -0.806858 | 6.708032e-50 | -8.615850e-47 |
| Msa0167160 | Msa0366810 | -0.822871 | 1.878207e-53 | -8.615850e-47 |
| Msa0168770 | Msa0366810 | -0.808547 | 2.935290e-50 | -8.615850e-47 |
| Msa0173950 | Msa0366810 | -0.803970 | 2.703577e-49 | -8.615850e-47 |
| Msa0174060 | Msa0366810 | -0.814205 | 1.734103e-51 | -8.615850e-47 |
| Msa0177320 | Msa0366810 | 0.801738 | 7.815436e-49 | -8.615850e-47 |
| Msa0180820 | Msa0366810 | 0.821486 | 3.936757e-53 | -8.615850e-47 |
| Msa0186240 | Msa0366810 | 0.812861 | 3.426596e-51 | -8.615850e-47 |
| Msa0195810 | Msa0366810 | -0.800990 | 1.111765e-48 | -8.615850e-47 |
| Msa0203090 | Msa0366810 | 0.806048 | 9.939867e-50 | -8.615850e-47 |
| Msa0224210 | Msa0366810 | 0.800849 | 1.188205e-48 | -8.615850e-47 |
| Msa0225280 | Msa0366810 | -0.804471 | 2.125710e-49 | -8.615850e-47 |
| Msa0366780 | Msa0366810 | 0.854624 | 1.087475e-61 | -8.615850e-47 |
| Msa0366810 | Msa0380450 | -0.820400 | 6.998620e-53 | -8.615850e-47 |
| Msa0366810 | Msa0383900 | 0.805333 | 1.403928e-49 | -8.615850e-47 |
| Msa0366810 | Msa0387630 | -0.802401 | 5.708920e-49 | -8.615850e-47 |
| Msa0366810 | Msa0389710 | 0.800285 | 1.548675e-48 | -8.615850e-47 |
| Msa0366810 | Msa0390590 | -0.827734 | 1.328488e-54 | -8.615850e-47 |
| Msa0366810 | Msa0390790 | 0.807762 | 4.313918e-50 | -8.615850e-47 |
| Msa0366810 | Msa0393100 | 0.833749 | 4.460086e-56 | -8.615850e-47 |
| Msa0366810 | Msa0402800 | 0.823569 | 1.291089e-53 | -8.615850e-47 |
| Msa0366810 | Msa0405200 | 0.804758 | 1.852375e-49 | -8.615850e-47 |
| Msa0366810 | Msa0414730 | 0.845467 | 3.989492e-59 | -8.615850e-47 |
| Msa0366810 | Msa0414740 | 0.853400 | 2.450013e-61 | -8.615850e-47 |
| Msa0366810 | Msa0417790 | -0.810380 | 1.186582e-50 | -8.615850e-47 |
| Msa0366810 | Msa0434300 | 0.810193 | 1.302156e-50 | -8.615850e-47 |
| Msa0366810 | Msa0434400 | 0.815231 | 1.027706e-51 | -8.615850e-47 |
| Msa0366810 | Msa0476600 | -0.811721 | 6.075661e-51 | -8.615850e-47 |
| Msa0366810 | Msa0476890 | -0.801643 | 8.173937e-49 | -8.615850e-47 |
| Msa0366810 | Msa0480550 | 0.824500 | 7.803803e-54 | -8.615850e-47 |
| Msa0366810 | Msa0488580 | 0.823089 | 1.671151e-53 | -8.615850e-47 |
| Msa0366810 | Msa0497860 | 0.820335 | 7.241455e-53 | -8.615850e-47 |
| Msa0366810 | Msa0505640 | 0.809248 | 2.077872e-50 | -8.615850e-47 |
| Msa0366810 | Msa0506370 | 0.860124 | 2.569823e-63 | -8.615850e-47 |
| Msa0366810 | Msa0508160 | 0.807228 | 5.600017e-50 | -8.615850e-47 |
| Msa0366810 | Msa0522140 | 0.803942 | 2.740442e-49 | -8.615850e-47 |
| Msa0366810 | Msa0522170 | 0.812090 | 5.050652e-51 | -8.615850e-47 |
| Msa0366810 | Msa0547060 | 0.801005 | 1.104026e-48 | -8.615850e-47 |
| Msa0366810 | Msa0550980 | -0.822842 | 1.907940e-53 | -8.615850e-47 |
| Msa0366810 | Msa0550990 | -0.819305 | 1.245445e-52 | -8.615850e-47 |
| Msa0366810 | Msa0554770 | -0.801380 | 9.252889e-49 | -8.615850e-47 |
| Msa0366810 | Msa0557440 | -0.812033 | 5.195482e-51 | -8.615850e-47 |
| Msa0366810 | Msa0560280 | 0.816036 | 6.800110e-52 | -8.615850e-47 |
| Msa0366810 | Msa0565180 | 0.821517 | 3.871759e-53 | -8.615850e-47 |
| Msa0366810 | Msa0565370 | -0.819340 | 1.222610e-52 | -8.615850e-47 |
| Msa0366810 | Msa0565430 | -0.824181 | 9.274147e-54 | -8.615850e-47 |
| Msa0366810 | Msa0572730 | -0.813387 | 2.626763e-51 | -8.615850e-47 |
| Msa0366810 | Msa0573950 | 0.823424 | 1.395704e-53 | -8.615850e-47 |
| Msa0366810 | Msa0576560 | 0.800429 | 1.447355e-48 | -8.615850e-47 |
| Msa0366810 | Msa0580890 | -0.808187 | 3.503490e-50 | -8.615850e-47 |
| Msa0366810 | Msa0583270 | -0.812929 | 3.310205e-51 | -8.615850e-47 |
| Msa0366810 | Msa0606340 | -0.821173 | 4.648469e-53 | -8.615850e-47 |
| Msa0366810 | Msa0606350 | -0.813890 | 2.035816e-51 | -8.615850e-47 |
| Msa0366810 | Msa0611060 | 0.800688 | 1.281838e-48 | -8.615850e-47 |
| Msa0366810 | Msa0614290 | 0.802794 | 4.738422e-49 | -8.615850e-47 |
| Msa0366810 | Msa0616890 | -0.803497 | 3.388447e-49 | -8.615850e-47 |
| Msa0366810 | Msa0638810 | 0.810385 | 1.183634e-50 | -8.615850e-47 |
| Msa0366810 | Msa0642920 | 0.811929 | 5.473539e-51 | -8.615850e-47 |
| Msa0366810 | Msa0657340 | 0.812891 | 3.374143e-51 | -8.615850e-47 |
| Msa0366810 | Msa0667670 | -0.810840 | 9.434940e-51 | -8.615850e-47 |
| Msa0366810 | Msa0690100 | -0.818426 | 1.972119e-52 | -8.615850e-47 |
| Msa0366810 | Msa0693750 | 0.828946 | 6.775656e-55 | -8.615850e-47 |
| Msa0366810 | Msa0695250 | -0.807823 | 4.187911e-50 | -8.615850e-47 |
| Msa0366810 | Msa0697510 | 0.821561 | 3.782015e-53 | -8.615850e-47 |
| Msa0366810 | Msa0699800 | 0.822826 | 1.924537e-53 | -8.615850e-47 |
| Msa0366810 | Msa0701430 | 0.824951 | 6.109026e-54 | -8.615850e-47 |
| Msa0366810 | Msa0713060 | 0.816919 | 4.314065e-52 | -8.615850e-47 |
| Msa0366810 | Msa0744560 | 0.823972 | 1.038639e-53 | -8.615850e-47 |
| Msa0366810 | Msa0788450 | -0.803674 | 3.113808e-49 | -8.615850e-47 |
| Msa0366810 | Msa0793270 | 0.821682 | 3.545160e-53 | -8.615850e-47 |
| Msa0366810 | Msa0795320 | 0.814104 | 1.826126e-51 | -8.615850e-47 |
| Msa0366810 | Msa0825570 | -0.803035 | 4.223673e-49 | -8.615850e-47 |
| Msa0366810 | Msa0826380 | 0.815356 | 9.640891e-52 | -8.615850e-47 |
| Msa0366810 | Msa0826450 | 0.823630 | 1.248889e-53 | -8.615850e-47 |
| Msa0366810 | Msa0826540 | -0.803579 | 3.259143e-49 | -8.615850e-47 |
| Msa0366810 | Msa0829210 | -0.800723 | 1.260634e-48 | -8.615850e-47 |
| Msa0366810 | Msa0829250 | -0.814111 | 1.819180e-51 | -8.615850e-47 |
| Msa0366810 | Msa0829990 | 0.834248 | 3.345512e-56 | -8.615850e-47 |
| Msa0366810 | Msa0865810 | 0.802368 | 5.799323e-49 | -8.615850e-47 |
| Msa0366810 | Msa0865830 | 0.806397 | 8.392699e-50 | -8.615850e-47 |
| Msa0366810 | Msa0873910 | 0.816895 | 4.368580e-52 | -8.615850e-47 |
| Msa0366810 | Msa0906660 | 0.804925 | 1.709093e-49 | -8.615850e-47 |
| Msa0366810 | Msa0921790 | 0.815372 | 9.561465e-52 | -8.615850e-47 |
| Msa0366810 | Msa0934290 | -0.809655 | 1.699722e-50 | -8.615850e-47 |
| Msa0366810 | Msa0971780 | -0.813099 | 3.038067e-51 | -8.615850e-47 |
| Msa0366810 | Msa1016580 | -0.812207 | 4.762057e-51 | -8.615850e-47 |
| Msa0366810 | Msa1030210 | 0.802474 | 5.515126e-49 | -8.615850e-47 |
| Msa0366810 | Msa1032790 | -0.802522 | 5.390472e-49 | -8.615850e-47 |
| Msa0366810 | Msa1037360 | 0.802697 | 4.961179e-49 | -8.615850e-47 |
| Msa0366810 | Msa1057940 | -0.808789 | 2.605452e-50 | -8.615850e-47 |
| Msa0366810 | Msa1058200 | 0.804035 | 2.619995e-49 | -8.615850e-47 |
| Msa0366810 | Msa1061970 | 0.802928 | 4.445767e-49 | -8.615850e-47 |
| Msa0366810 | Msa1064240 | 0.811476 | 6.870333e-51 | -8.615850e-47 |
| Msa0366810 | Msa1075090 | 0.801943 | 7.091774e-49 | -8.615850e-47 |
| Msa0366810 | Msa1088000 | -0.806296 | 8.814150e-50 | -8.615850e-47 |
| Msa0366810 | Msa1107220 | 0.815446 | 9.208089e-52 | -8.615850e-47 |
| Msa0366810 | Msa1107230 | 0.826266 | 2.980566e-54 | -8.615850e-47 |
| Msa0366810 | Msa1107250 | 0.826264 | 2.983747e-54 | -8.615850e-47 |
| Msa0366810 | Msa1117770 | -0.812862 | 3.423816e-51 | -8.615850e-47 |
| Msa0366810 | Msa1121720 | -0.815779 | 7.760477e-52 | -8.615850e-47 |
| Msa0366810 | Msa1137750 | 0.801381 | 9.248590e-49 | -8.615850e-47 |
| Msa0366810 | Msa1150740 | 0.803747 | 3.007320e-49 | -8.615850e-47 |
| Msa0366810 | Msa1150750 | 0.809752 | 1.619921e-50 | -8.615850e-47 |
| Msa0366810 | Msa1154240 | 0.828015 | 1.136800e-54 | -8.615850e-47 |
| Msa0366810 | Msa1173150 | 0.830404 | 2.992980e-55 | -8.615850e-47 |
| Msa0366810 | Msa1174280 | 0.815568 | 8.647740e-52 | -8.615850e-47 |
| Msa0366810 | Msa1199540 | -0.800919 | 1.149690e-48 | -8.615850e-47 |
| Msa0366810 | Msa1199870 | 0.808184 | 3.507864e-50 | -8.615850e-47 |
| Msa0366810 | Msa1202110 | 0.837139 | 6.200550e-57 | -8.615850e-47 |
| Msa0366810 | Msa1203810 | 0.813284 | 2.767240e-51 | -8.615850e-47 |
| Msa0366810 | Msa1212150 | -0.803800 | 2.931728e-49 | -8.615850e-47 |
| Msa0366810 | Msa1212210 | -0.803229 | 3.851704e-49 | -8.615850e-47 |
| Msa0366810 | Msa1217260 | 0.832936 | 7.110911e-56 | -8.615850e-47 |
| Msa0366810 | Msa1228260 | -0.801426 | 9.055578e-49 | -8.615850e-47 |
| Msa0366810 | Msa1236120 | -0.830616 | 2.656459e-55 | -8.615850e-47 |
| Msa0366810 | Msa1236190 | -0.831482 | 1.628493e-55 | -8.615850e-47 |
| Msa0366810 | Msa1239210 | 0.811562 | 6.578225e-51 | -8.615850e-47 |
| Msa0366810 | Msa1252810 | 0.812088 | 5.053995e-51 | -8.615850e-47 |
| Msa0366810 | Msa1254870 | 0.837692 | 4.474324e-57 | -8.615850e-47 |
| Msa0366810 | Msa1271220 | -0.804167 | 2.459745e-49 | -8.615850e-47 |
| Msa0366810 | Msa1277270 | -0.800642 | 1.309891e-48 | -8.615850e-47 |
| Msa0366810 | Msa1279060 | 0.812552 | 4.003772e-51 | -8.615850e-47 |
| Msa0366810 | Msa1299480 | 0.805463 | 1.319025e-49 | -8.615850e-47 |
| Msa0366810 | Msa1303620 | -0.802953 | 4.393372e-49 | -8.615850e-47 |
| Msa0366810 | Msa1308430 | -0.801565 | 8.480501e-49 | -8.615850e-47 |
| Msa0366810 | Msa1315880 | -0.810426 | 1.159268e-50 | -8.615850e-47 |
| Msa0366810 | Msa1328430 | 0.837478 | 5.077422e-57 | -8.615850e-47 |
| Msa0366810 | Msa1341710 | -0.803713 | 3.057506e-49 | -8.615850e-47 |
| Msa0366810 | Msa1348180 | -0.801602 | 8.334932e-49 | -8.615850e-47 |
| Msa0366810 | Msa1349830 | 0.817709 | 2.865332e-52 | -8.615850e-47 |
| Msa0366810 | Msa1350590 | -0.815602 | 8.498151e-52 | -8.615850e-47 |
| Msa0366810 | Msa1356100 | -0.814706 | 1.344028e-51 | -8.615850e-47 |
| Msa0366810 | Msa1357570 | 0.807819 | 4.196079e-50 | -8.615850e-47 |
| Msa0366810 | Msa1372460 | -0.803086 | 4.122479e-49 | -8.615850e-47 |
| Msa0366810 | Msa1373310 | -0.814804 | 1.278289e-51 | -8.615850e-47 |
| Msa0366810 | Msa1377980 | -0.813583 | 2.378530e-51 | -8.615850e-47 |
| Msa0366810 | Msa1379020 | 0.803505 | 3.376460e-49 | -8.615850e-47 |
| Msa0366810 | Msa1395380 | -0.808632 | 2.814708e-50 | -8.615850e-47 |
| Msa0366810 | Msa1398120 | 0.805765 | 1.139985e-49 | -8.615850e-47 |
| Msa0366810 | Msa1403690 | 0.811038 | 8.551186e-51 | -8.615850e-47 |
| Msa0366810 | Msa1408230 | -0.807614 | 4.638343e-50 | -8.615850e-47 |
| Msa0366810 | Msa1408280 | -0.812595 | 3.917717e-51 | -8.615850e-47 |
| Msa0366810 | Msa1410480 | -0.813192 | 2.898697e-51 | -8.615850e-47 |
| Msa0366810 | Msa1410500 | -0.809688 | 1.672103e-50 | -8.615850e-47 |
| Msa0366810 | Msa1412410 | 0.842664 | 2.252692e-58 | -8.615850e-47 |
| Msa0366810 | Msa1413150 | 0.813028 | 3.149362e-51 | -8.615850e-47 |
| Msa0366810 | Msa1415510 | -0.804296 | 2.312689e-49 | -8.615850e-47 |
| Msa0366810 | Msa1422230 | 0.802139 | 6.463869e-49 | -8.615850e-47 |
| Msa0366810 | Msa1424490 | -0.804724 | 1.883212e-49 | -8.615850e-47 |
| Msa0366810 | Msa1427860 | 0.852691 | 3.910945e-61 | -8.615850e-47 |
| Msa0366810 | Msa1429470 | 0.814338 | 1.620845e-51 | -8.615850e-47 |
| Msa0366810 | Msa1434860 | -0.813394 | 2.616629e-51 | -8.615850e-47 |
| Msa0366810 | Msa1435320 | 0.820573 | 6.387421e-53 | -8.615850e-47 |
| Msa0366810 | Msa1443400 | 0.817676 | 2.914986e-52 | -8.615850e-47 |
| Msa0366810 | Msa1444130 | -0.802239 | 6.163831e-49 | -8.615850e-47 |
| Msa0366810 | Msa1448040 | 0.816408 | 5.616246e-52 | -8.615850e-47 |
| Msa0366810 | Msa1453600 | 0.803368 | 3.605076e-49 | -8.615850e-47 |
| Msa0366810 | Msa1454300 | -0.810686 | 1.018746e-50 | -8.615850e-47 |
| Msa0366810 | Msa1459920 | 0.834220 | 3.399510e-56 | -8.615850e-47 |
| Msa0240630 | Msa0366810 | -0.809624 | 1.725616e-50 | -8.615850e-47 |
| Msa0246140 | Msa0366810 | 0.831776 | 1.378053e-55 | -8.615850e-47 |
| Msa0253230 | Msa0366810 | -0.801668 | 8.078341e-49 | -8.615850e-47 |
| Msa0254640 | Msa0366810 | 0.800258 | 1.568320e-48 | -8.615850e-47 |
| Msa0265480 | Msa0366810 | 0.833384 | 5.500487e-56 | -8.615850e-47 |
| Msa0267700 | Msa0366810 | 0.823329 | 1.468698e-53 | -8.615850e-47 |
| Msa0269710 | Msa0366810 | 0.810866 | 9.315602e-51 | -8.615850e-47 |
| Msa0284730 | Msa0366810 | 0.819109 | 1.380354e-52 | -8.615850e-47 |
| Msa0294200 | Msa0366810 | 0.800780 | 1.227304e-48 | -8.615850e-47 |
| Msa0306310 | Msa0366810 | 0.810266 | 1.255279e-50 | -8.615850e-47 |
| Msa0310270 | Msa0366810 | -0.810779 | 9.726650e-51 | -8.615850e-47 |
| Msa0319680 | Msa0366810 | 0.871025 | 9.352845e-67 | -8.615850e-47 |
| Msa0324810 | Msa0366810 | 0.818156 | 2.269991e-52 | -8.615850e-47 |
| Msa0332360 | Msa0366810 | 0.801493 | 8.771591e-49 | -8.615850e-47 |
| Msa0340370 | Msa0366810 | 0.837233 | 5.866587e-57 | -8.615850e-47 |
| Msa0340700 | Msa0366810 | -0.801779 | 7.666382e-49 | -8.615850e-47 |
| Msa0345050 | Msa0366810 | 0.805609 | 1.229355e-49 | -8.615850e-47 |
| Msa0345980 | Msa0366810 | 0.803860 | 2.848853e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366810 | MtrunA17_Chr3g0107741 | 94.091 | 220 | 13 | 0 | 1 | 220 | 5 | 224 | 2.02e-154 | 427 |
| Msa0366810 | MtrunA17_Chr3g0107731 | 90.411 | 219 | 21 | 0 | 2 | 220 | 6 | 224 | 1.70e-147 | 409 |
| Msa0366810 | MtrunA17_Chr2g0312771 | 63.134 | 217 | 80 | 0 | 4 | 220 | 3 | 219 | 7.14e-103 | 296 |
| Msa0366810 | MtrunA17_Chr2g0312751 | 60.369 | 217 | 86 | 0 | 4 | 220 | 3 | 219 | 8.88e-100 | 288 |
| Msa0366810 | MtrunA17_Chr2g0312781 | 60.849 | 212 | 83 | 0 | 4 | 215 | 20 | 231 | 1.90e-96 | 280 |
| Msa0366810 | MtrunA17_Chr2g0312731 | 59.908 | 217 | 87 | 0 | 4 | 220 | 3 | 219 | 1.21e-95 | 278 |
| Msa0366810 | MtrunA17_Chr2g0312811 | 60.274 | 219 | 85 | 1 | 4 | 220 | 3 | 221 | 9.04e-94 | 273 |
| Msa0366810 | MtrunA17_Chr2g0312681 | 57.143 | 217 | 93 | 0 | 4 | 220 | 3 | 219 | 1.09e-91 | 268 |
| Msa0366810 | MtrunA17_Chr2g0312691 | 59.908 | 217 | 87 | 0 | 4 | 220 | 3 | 219 | 9.07e-91 | 266 |
| Msa0366810 | MtrunA17_Chr2g0312791 | 59.817 | 219 | 86 | 2 | 4 | 220 | 3 | 221 | 2.83e-88 | 259 |
| Msa0366810 | MtrunA17_Chr2g0312711 | 58.065 | 217 | 90 | 1 | 4 | 220 | 3 | 218 | 5.68e-88 | 258 |
| Msa0366810 | MtrunA17_Chr8g0357211 | 54.545 | 220 | 99 | 1 | 1 | 220 | 1 | 219 | 3.31e-87 | 256 |
| Msa0366810 | MtrunA17_Chr2g0312721 | 56.075 | 214 | 94 | 0 | 4 | 217 | 3 | 216 | 4.21e-87 | 256 |
| Msa0366810 | MtrunA17_Chr8g0357241 | 54.091 | 220 | 100 | 1 | 1 | 220 | 1 | 219 | 8.47e-87 | 256 |
| Msa0366810 | MtrunA17_Chr5g0433801 | 50.459 | 218 | 106 | 2 | 4 | 220 | 5 | 221 | 4.33e-75 | 226 |
| Msa0366810 | MtrunA17_Chr4g0069471 | 59.341 | 182 | 71 | 2 | 3 | 183 | 23 | 202 | 5.89e-75 | 225 |
| Msa0366810 | MtrunA17_Chr5g0415411 | 42.727 | 220 | 117 | 4 | 1 | 211 | 1 | 220 | 2.74e-49 | 160 |
| Msa0366810 | MtrunA17_Chr8g0363751 | 38.627 | 233 | 126 | 5 | 1 | 219 | 1 | 230 | 7.36e-46 | 152 |
| Msa0366810 | MtrunA17_Chr7g0240681 | 40.758 | 211 | 119 | 5 | 3 | 209 | 5 | 213 | 2.08e-45 | 150 |
| Msa0366810 | MtrunA17_Chr7g0240541 | 43.367 | 196 | 105 | 6 | 14 | 206 | 16 | 208 | 2.07e-44 | 148 |
| Msa0366810 | MtrunA17_Chr7g0240631 | 38.095 | 210 | 125 | 5 | 3 | 209 | 5 | 212 | 1.64e-43 | 145 |
| Msa0366810 | MtrunA17_Chr7g0240641 | 38.095 | 210 | 125 | 4 | 3 | 209 | 5 | 212 | 2.44e-43 | 145 |
| Msa0366810 | MtrunA17_Chr4g0008781 | 40.187 | 214 | 115 | 7 | 3 | 209 | 6 | 213 | 3.72e-43 | 144 |
| Msa0366810 | MtrunA17_Chr1g0196661 | 40.376 | 213 | 120 | 4 | 1 | 209 | 1 | 210 | 5.48e-43 | 144 |
| Msa0366810 | MtrunA17_Chr3g0132581 | 46.746 | 169 | 89 | 1 | 1 | 169 | 1 | 168 | 6.71e-43 | 144 |
| Msa0366810 | MtrunA17_Chr8g0379581 | 38.288 | 222 | 133 | 3 | 1 | 219 | 1 | 221 | 9.54e-43 | 144 |
| Msa0366810 | MtrunA17_Chr7g0240531 | 41.546 | 207 | 116 | 5 | 14 | 217 | 16 | 220 | 2.67e-41 | 140 |
| Msa0366810 | MtrunA17_Chr7g0240691 | 39.048 | 210 | 122 | 4 | 4 | 209 | 36 | 243 | 5.69e-41 | 140 |
| Msa0366810 | MtrunA17_Chr7g0240551 | 40.097 | 207 | 119 | 5 | 14 | 217 | 16 | 220 | 5.93e-41 | 139 |
| Msa0366810 | MtrunA17_Chr4g0008791 | 37.383 | 214 | 127 | 5 | 1 | 209 | 1 | 212 | 9.28e-41 | 138 |
| Msa0366810 | MtrunA17_Chr7g0240561 | 37.900 | 219 | 117 | 6 | 1 | 209 | 3 | 212 | 9.85e-41 | 138 |
| Msa0366810 | MtrunA17_Chr1g0196721 | 40.000 | 210 | 121 | 3 | 5 | 210 | 2 | 210 | 1.02e-40 | 138 |
| Msa0366810 | MtrunA17_Chr5g0417011 | 33.816 | 207 | 129 | 3 | 6 | 205 | 8 | 213 | 1.22e-40 | 138 |
| Msa0366810 | MtrunA17_Chr1g0196771 | 40.845 | 213 | 107 | 8 | 4 | 206 | 2 | 205 | 1.35e-40 | 138 |
| Msa0366810 | MtrunA17_Chr4g0029341 | 38.710 | 217 | 128 | 3 | 4 | 216 | 3 | 218 | 9.54e-40 | 135 |
| Msa0366810 | MtrunA17_Chr7g0240611 | 36.493 | 211 | 125 | 5 | 2 | 209 | 4 | 208 | 2.91e-39 | 134 |
| Msa0366810 | MtrunA17_Chr1g0196711 | 39.906 | 213 | 121 | 5 | 1 | 209 | 1 | 210 | 4.67e-39 | 134 |
| Msa0366810 | MtrunA17_Chr8g0379561 | 39.901 | 203 | 119 | 2 | 1 | 201 | 2 | 203 | 6.12e-39 | 134 |
| Msa0366810 | MtrunA17_Chr7g0240511 | 40.291 | 206 | 114 | 6 | 4 | 207 | 6 | 204 | 6.25e-39 | 134 |
| Msa0366810 | MtrunA17_Chr7g0240581 | 38.614 | 202 | 119 | 4 | 3 | 201 | 5 | 204 | 2.80e-38 | 132 |
| Msa0366810 | MtrunA17_Chr1g0196691 | 37.864 | 206 | 118 | 5 | 12 | 210 | 35 | 237 | 5.47e-38 | 132 |
| Msa0366810 | MtrunA17_Chr7g0240671 | 36.585 | 205 | 125 | 4 | 6 | 209 | 5 | 205 | 2.84e-37 | 129 |
| Msa0366810 | MtrunA17_Chr6g0483141 | 38.235 | 204 | 112 | 6 | 19 | 213 | 17 | 215 | 5.30e-37 | 129 |
| Msa0366810 | MtrunA17_Chr8g0391631 | 43.210 | 162 | 79 | 3 | 1 | 152 | 17 | 175 | 2.66e-36 | 125 |
| Msa0366810 | MtrunA17_Chr1g0212301 | 38.614 | 202 | 118 | 5 | 5 | 201 | 3 | 203 | 7.61e-36 | 125 |
| Msa0366810 | MtrunA17_Chr7g0240661 | 38.462 | 208 | 123 | 5 | 3 | 209 | 5 | 208 | 2.94e-35 | 124 |
| Msa0366810 | MtrunA17_Chr7g0240521 | 41.885 | 191 | 106 | 5 | 14 | 201 | 23 | 211 | 5.61e-35 | 124 |
| Msa0366810 | MtrunA17_Chr7g0240651 | 36.190 | 210 | 125 | 5 | 3 | 209 | 5 | 208 | 2.68e-34 | 122 |
| Msa0366810 | MtrunA17_Chr2g0313561 | 61.765 | 68 | 26 | 0 | 48 | 115 | 1 | 68 | 1.56e-25 | 95.1 |
| Msa0366810 | MtrunA17_Chr7g0263221 | 30.303 | 198 | 121 | 8 | 16 | 206 | 37 | 224 | 3.94e-14 | 68.9 |
| Msa0366810 | MtrunA17_Chr5g0415421 | 46.575 | 73 | 37 | 1 | 29 | 99 | 11 | 83 | 4.76e-12 | 61.2 |
| Msa0366810 | MtrunA17_Chr1g0181861 | 30.247 | 162 | 92 | 8 | 53 | 206 | 77 | 225 | 1.66e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366810 | AT1G17180.1 | 63.594 | 217 | 79 | 0 | 4 | 220 | 3 | 219 | 8.38e-100 | 289 |
| Msa0366810 | AT1G78380.1 | 61.972 | 213 | 81 | 0 | 4 | 216 | 3 | 215 | 2.26e-99 | 288 |
| Msa0366810 | AT1G78370.1 | 60.664 | 211 | 83 | 0 | 7 | 217 | 6 | 216 | 4.70e-99 | 287 |
| Msa0366810 | AT1G17170.1 | 62.212 | 217 | 81 | 1 | 4 | 220 | 3 | 218 | 5.85e-94 | 274 |
| Msa0366810 | AT1G78360.1 | 59.259 | 216 | 87 | 1 | 6 | 220 | 5 | 220 | 9.54e-91 | 266 |
| Msa0366810 | AT1G78340.1 | 56.132 | 212 | 93 | 0 | 4 | 215 | 3 | 214 | 2.14e-88 | 260 |
| Msa0366810 | AT1G53680.1 | 55.804 | 224 | 95 | 3 | 1 | 220 | 1 | 224 | 2.16e-86 | 255 |
| Msa0366810 | AT1G78320.1 | 58.824 | 204 | 84 | 0 | 3 | 206 | 2 | 205 | 2.06e-83 | 247 |
| Msa0366810 | AT1G17190.1 | 52.294 | 218 | 104 | 0 | 1 | 218 | 1 | 218 | 5.49e-81 | 241 |
| Msa0366810 | AT3G43800.1 | 51.584 | 221 | 103 | 3 | 1 | 217 | 1 | 221 | 7.02e-76 | 228 |
| Msa0366810 | AT1G78320.2 | 50.980 | 204 | 73 | 1 | 3 | 206 | 2 | 178 | 7.02e-66 | 202 |
| Msa0366810 | AT1G10360.1 | 44.954 | 218 | 112 | 4 | 1 | 210 | 1 | 218 | 6.57e-53 | 170 |
| Msa0366810 | AT1G10370.1 | 43.119 | 218 | 116 | 4 | 1 | 210 | 1 | 218 | 2.78e-48 | 158 |
| Msa0366810 | AT3G09270.1 | 39.423 | 208 | 121 | 4 | 3 | 206 | 4 | 210 | 1.81e-46 | 153 |
| Msa0366810 | AT2G29420.1 | 40.500 | 200 | 116 | 3 | 4 | 201 | 8 | 206 | 1.02e-45 | 152 |
| Msa0366810 | AT1G59700.1 | 42.202 | 218 | 111 | 6 | 4 | 209 | 5 | 219 | 1.03e-45 | 152 |
| Msa0366810 | AT1G74590.1 | 36.937 | 222 | 124 | 5 | 6 | 216 | 8 | 224 | 3.44e-43 | 145 |
| Msa0366810 | AT5G62480.1 | 37.500 | 224 | 130 | 4 | 2 | 215 | 5 | 228 | 6.24e-43 | 145 |
| Msa0366810 | AT1G59670.1 | 37.838 | 222 | 129 | 5 | 4 | 216 | 5 | 226 | 7.03e-40 | 137 |
| Msa0366810 | AT2G29440.1 | 38.049 | 205 | 115 | 4 | 4 | 201 | 5 | 204 | 1.23e-39 | 136 |
| Msa0366810 | AT1G27130.1 | 35.780 | 218 | 131 | 4 | 4 | 212 | 5 | 222 | 3.24e-39 | 135 |
| Msa0366810 | AT2G29490.1 | 39.130 | 207 | 112 | 5 | 3 | 201 | 5 | 205 | 7.00e-39 | 134 |
| Msa0366810 | AT2G29480.1 | 39.614 | 207 | 111 | 6 | 3 | 201 | 5 | 205 | 9.92e-39 | 134 |
| Msa0366810 | AT1G69930.1 | 35.377 | 212 | 130 | 3 | 6 | 210 | 13 | 224 | 2.73e-38 | 133 |
| Msa0366810 | AT1G27140.1 | 34.703 | 219 | 133 | 4 | 4 | 212 | 5 | 223 | 1.42e-36 | 129 |
| Msa0366810 | AT2G29450.1 | 37.321 | 209 | 119 | 5 | 1 | 201 | 1 | 205 | 4.92e-36 | 127 |
| Msa0366810 | AT2G29470.1 | 36.239 | 218 | 125 | 6 | 3 | 208 | 5 | 220 | 2.60e-35 | 125 |
| Msa0366810 | AT2G29460.1 | 37.931 | 203 | 120 | 4 | 3 | 201 | 5 | 205 | 6.25e-35 | 124 |
| Msa0366810 | AT1G69920.1 | 30.909 | 220 | 139 | 5 | 2 | 210 | 31 | 248 | 1.98e-31 | 115 |
| Msa0366810 | AT5G62480.2 | 29.911 | 224 | 121 | 5 | 2 | 215 | 5 | 202 | 1.14e-23 | 94.4 |
| Msa0366810 | AT5G62480.3 | 29.911 | 224 | 120 | 5 | 2 | 215 | 5 | 201 | 1.29e-23 | 94.4 |
Find 49 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATCATCTAACAACATTT+TGG | 0.262897 | 3_1:+61769049 | Msa0366810:five_prime_UTR |
| TCATAAAATATGAATTAAAT+TGG | 0.270372 | 3_1:+61771735 | Msa0366810:three_prime_UTR |
| AACGATCACAAGCCAAGTTT+TGG | 0.283238 | 3_1:+61769376 | Msa0366810:CDS |
| CCCCACCCTCACAAAATCTA+TGG | 0.311159 | 3_1:+61771592 | Msa0366810:CDS |
| ATATAGATATTTGTGGTGTT+TGG | 0.328328 | 3_1:-61769031 | None:intergenic |
| CTCTTATACCCTTCACTAGT+TGG | 0.329236 | 3_1:+61771461 | Msa0366810:CDS |
| AAGTCATCTCCATCAAAATA+TGG | 0.337979 | 3_1:-61771421 | None:intergenic |
| GTGTCCTAAGCTTGTGGCTT+GGG | 0.342320 | 3_1:+61771528 | Msa0366810:CDS |
| TATATTAAGTGATTCACATA+TGG | 0.358906 | 3_1:-61769292 | None:intergenic |
| TTGGCTTGTGATCGTTTGTA+AGG | 0.383467 | 3_1:-61769369 | None:intergenic |
| TTTCCATTATGAATCAAAAC+CGG | 0.387956 | 3_1:-61769267 | None:intergenic |
| CTCTAAAAGCAGAGAGCTCT+TGG | 0.400227 | 3_1:-61769220 | None:intergenic |
| TTTACACTTACGAGATATAT+GGG | 0.406047 | 3_1:+61771485 | Msa0366810:CDS |
| CTTCATACAAAGTTCTTCTC+AGG | 0.407955 | 3_1:-61771681 | None:intergenic |
| TATAGATATTTGTGGTGTTT+GGG | 0.414703 | 3_1:-61769030 | None:intergenic |
| TTGGCCCAAGCCACAAGCTT+AGG | 0.419595 | 3_1:-61771532 | None:intergenic |
| ATATTAAGTGATTCACATAT+GGG | 0.451582 | 3_1:-61769291 | None:intergenic |
| TTGAGTACATTGATGAAGCT+TGG | 0.459310 | 3_1:+61769316 | Msa0366810:CDS |
| AGCTTGTGGCTTGGGCCAAA+AGG | 0.465671 | 3_1:+61771536 | Msa0366810:CDS |
| TTAGATGATATAGATATTTG+TGG | 0.468033 | 3_1:-61769038 | None:intergenic |
| AATGTAATCTCCCCAAAACT+TGG | 0.487995 | 3_1:-61769388 | None:intergenic |
| TTCCATTATGAATCAAAACC+GGG | 0.499687 | 3_1:-61769266 | None:intergenic |
| AGGAAAGGTTGAAGAACAAG+AGG | 0.520776 | 3_1:+61771339 | Msa0366810:CDS |
| AAGACTCTAGAAGATGAGCT+TGG | 0.522791 | 3_1:+61771391 | Msa0366810:CDS |
| ACTCTCATTGCATACACGCT+TGG | 0.524529 | 3_1:-61769138 | None:intergenic |
| AATGAGAGTGAAAATCGCTT+TGG | 0.526915 | 3_1:+61769152 | Msa0366810:CDS |
| ACAGCATTCGAAGGAAGCTA+TGG | 0.529203 | 3_1:+61771314 | Msa0366810:CDS |
| AGTGTCCTAAGCTTGTGGCT+TGG | 0.547472 | 3_1:+61771527 | Msa0366810:CDS |
| GGCTTGGGCCAAAAGGTGTA+TGG | 0.551448 | 3_1:+61771543 | Msa0366810:CDS |
| AGTGTAAAACCAACTAGTGA+AGG | 0.558553 | 3_1:-61771470 | None:intergenic |
| AAGGTTGAAGAACAAGAGGA+AGG | 0.559445 | 3_1:+61771343 | Msa0366810:CDS |
| TGATCGTTTGTAAGGGTCAG+AGG | 0.563474 | 3_1:-61769361 | None:intergenic |
| GAAAATCGCTTTGGAAGAGA+AGG | 0.565948 | 3_1:+61769161 | Msa0366810:CDS |
| TGGCTTGTGATCGTTTGTAA+GGG | 0.580270 | 3_1:-61769368 | None:intergenic |
| CATCTGATTATAAGCTAAGA+CGG | 0.585820 | 3_1:+61771822 | Msa0366810:three_prime_UTR |
| GGGTCAGAGGGCAAAAGAGA+AGG | 0.589806 | 3_1:-61769348 | None:intergenic |
| GAAAGAGTGTCCTAAGCTTG+TGG | 0.598040 | 3_1:+61771522 | Msa0366810:CDS |
| TGACTTTGGGTATGTAGATG+TGG | 0.602122 | 3_1:+61771438 | Msa0366810:CDS |
| GTGTAAAACCAACTAGTGAA+GGG | 0.625155 | 3_1:-61771469 | None:intergenic |
| GATCGTTTGTAAGGGTCAGA+GGG | 0.625238 | 3_1:-61769360 | None:intergenic |
| ATTCGAAGGAAGCTATGGAA+AGG | 0.640495 | 3_1:+61771319 | Msa0366810:CDS |
| TGTAGGTATACAGCATTCGA+AGG | 0.646256 | 3_1:+61771305 | Msa0366810:intron |
| ATGCAATATAAACAGAAACA+TGG | 0.646292 | 3_1:+61771622 | Msa0366810:CDS |
| AAGGAAGCTATGGAAAGGAA+AGG | 0.650275 | 3_1:+61771324 | Msa0366810:CDS |
| AAGCAAGCTACACATGGCTG+AGG | 0.652900 | 3_1:+61769089 | Msa0366810:exon |
| ACATACAAGCAAGCTACACA+TGG | 0.655880 | 3_1:+61769083 | Msa0366810:exon |
| AAAATCGCTTTGGAAGAGAA+GGG | 0.661881 | 3_1:+61769162 | Msa0366810:CDS |
| ACACATGGCTGAGGACAATG+TGG | 0.697074 | 3_1:+61769098 | Msa0366810:exon |
| GTTTGACAAGAAATAAAACG+TGG | 0.702299 | 3_1:-61768980 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATAAAATATGAATTAAAT+TGG | + | chr3_1:61771735-61771754 | Msa0366810:three_prime_UTR | 10.0% |
| !! | TGACAAAAAAAAAAAAATCA+AGG | + | chr3_1:61769892-61769911 | Msa0366810:intron | 15.0% |
| !!! | TTTGTTTTTAAATTGATTGT+AGG | - | chr3_1:61769924-61769943 | None:intergenic | 15.0% |
| !! | TTGATGTGTTAAAATATAAT+TGG | - | chr3_1:61769993-61770012 | None:intergenic | 15.0% |
| !!! | TATCATTTTTTTTTGTCATA+GGG | - | chr3_1:61771016-61771035 | None:intergenic | 15.0% |
| !!! | ATATCATTTTTTTTTGTCAT+AGG | - | chr3_1:61771015-61771034 | None:intergenic | 15.0% |
| !! | CTACTTAAAATAAACAATAA+TGG | - | chr3_1:61770765-61770784 | None:intergenic | 15.0% |
| !! | CTACTTAAAATAAACAATAA+TGG | + | chr3_1:61770765-61770784 | Msa0366810:intron | 15.0% |
| !!! | ATATCATTTTTTTTTGTCAT+AGG | + | chr3_1:61771015-61771034 | Msa0366810:intron | 15.0% |
| !!! | TATCATTTTTTTTTGTCATA+GGG | + | chr3_1:61771016-61771035 | Msa0366810:intron | 15.0% |
| !! | AAAATATGGTTCAATATTTA+TGG | - | chr3_1:61771074-61771093 | None:intergenic | 15.0% |
| !! | TTTAAAAAAGAGTTATTCAT+AGG | + | chr3_1:61771248-61771267 | Msa0366810:intron | 15.0% |
| !! | TTAAAAAAGAGTTATTCATA+GGG | + | chr3_1:61771249-61771268 | Msa0366810:intron | 15.0% |
| !!! | TCTTTTAATTTAATCAAAAG+AGG | - | chr3_1:61771854-61771873 | None:intergenic | 15.0% |
| !! | AAAGATGAAAAATGTATTAT+TGG | + | chr3_1:61771869-61771888 | Msa0366810:three_prime_UTR | 15.0% |
| !! | TTAGATGATATAGATATTTG+TGG | - | chr3_1:61769041-61769060 | None:intergenic | 20.0% |
| !!! | TATATCATCTAACAACATTT+TGG | + | chr3_1:61769049-61769068 | Msa0366810:five_prime_UTR | 20.0% |
| !! | ATATTAAGTGATTCACATAT+GGG | - | chr3_1:61769294-61769313 | None:intergenic | 20.0% |
| !! | TATATTAAGTGATTCACATA+TGG | - | chr3_1:61769295-61769314 | None:intergenic | 20.0% |
| !!! | AATTAAAACATTTTCGTGTT+TGG | + | chr3_1:61769594-61769613 | Msa0366810:intron | 20.0% |
| !! | CACTTATTGTTCAAAATTAT+TGG | + | chr3_1:61769818-61769837 | Msa0366810:intron | 20.0% |
| !!! | TTCTCTTTTACATGAATAAA+GGG | - | chr3_1:61769849-61769868 | None:intergenic | 20.0% |
| !!! | ATTCTCTTTTACATGAATAA+AGG | - | chr3_1:61769850-61769869 | None:intergenic | 20.0% |
| !! | AGAATTGCATAATAAATTCA+AGG | + | chr3_1:61769865-61769884 | Msa0366810:intron | 20.0% |
| !!! | GTTTGATTTTCAATTTCAAA+GGG | - | chr3_1:61770058-61770077 | None:intergenic | 20.0% |
| !!! | TGTTTGATTTTCAATTTCAA+AGG | - | chr3_1:61770059-61770078 | None:intergenic | 20.0% |
| !!! | ATCATTTTTTTTTGTCATAG+GGG | - | chr3_1:61771017-61771036 | None:intergenic | 20.0% |
| !!! | ACGATAATAATTTTCAACTA+GGG | - | chr3_1:61770986-61771005 | None:intergenic | 20.0% |
| !!! | TACGATAATAATTTTCAACT+AGG | - | chr3_1:61770985-61771004 | None:intergenic | 20.0% |
| !!! | TTGTTGTTCTTTATTTCAAA+TGG | + | chr3_1:61770291-61770310 | Msa0366810:intron | 20.0% |
| !!! | TAAGTAGTTTTTTTTTTCTC+TGG | - | chr3_1:61770683-61770702 | None:intergenic | 20.0% |
| !!! | TTGTTGTTCTTTATTTCAAA+TGG | - | chr3_1:61770291-61770310 | None:intergenic | 20.0% |
| !!! | TACGATAATAATTTTCAACT+AGG | + | chr3_1:61770985-61771004 | Msa0366810:intron | 20.0% |
| !!! | ACGATAATAATTTTCAACTA+GGG | + | chr3_1:61770986-61771005 | Msa0366810:intron | 20.0% |
| !!! | ATCATTTTTTTTTGTCATAG+GGG | + | chr3_1:61771017-61771036 | Msa0366810:intron | 20.0% |
| !! | ATATACTAGTTGACAAAATA+TGG | - | chr3_1:61771088-61771107 | None:intergenic | 20.0% |
| !! | ATGGATAATAATGTAAAAGT+GGG | - | chr3_1:61771129-61771148 | None:intergenic | 20.0% |
| !! | TATGGATAATAATGTAAAAG+TGG | - | chr3_1:61771130-61771149 | None:intergenic | 20.0% |
| !!! | AAATACCAAAATTGACTTTA+TGG | - | chr3_1:61771207-61771226 | None:intergenic | 20.0% |
| ! | TATAGATATTTGTGGTGTTT+GGG | - | chr3_1:61769033-61769052 | None:intergenic | 25.0% |
| ! | ATATAGATATTTGTGGTGTT+TGG | - | chr3_1:61769034-61769053 | None:intergenic | 25.0% |
| ! | TTTCCATTATGAATCAAAAC+CGG | - | chr3_1:61769270-61769289 | None:intergenic | 25.0% |
| ! | CATTATGAATTCAGTAGTTT+AGG | - | chr3_1:61769506-61769525 | None:intergenic | 25.0% |
| !! | CGATAATAATTTTCAACTAG+GGG | - | chr3_1:61770987-61771006 | None:intergenic | 25.0% |
| ! | TGTGTGTTCTTAATTTAAGT+TGG | + | chr3_1:61770244-61770263 | Msa0366810:intron | 25.0% |
| !!! | CATTTTAGAAGTAGAACATT+GGG | - | chr3_1:61770797-61770816 | None:intergenic | 25.0% |
| !!! | AATTAGTTGTTGCTTTTCTT+TGG | + | chr3_1:61770460-61770479 | Msa0366810:intron | 25.0% |
| ! | ACTACTTAAAATAAACAAGC+AGG | + | chr3_1:61770695-61770714 | Msa0366810:intron | 25.0% |
| !!! | CATTTTAGAAGTAGAACATT+GGG | + | chr3_1:61770797-61770816 | Msa0366810:intron | 25.0% |
| ! | TGTGTGTTCTTAATTTAAGT+TGG | - | chr3_1:61770244-61770263 | None:intergenic | 25.0% |
| !! | CGATAATAATTTTCAACTAG+GGG | + | chr3_1:61770987-61771006 | Msa0366810:intron | 25.0% |
| !! | ATAAGCCATAAAGTCAATTT+TGG | + | chr3_1:61771199-61771218 | Msa0366810:intron | 25.0% |
| ! | GGTAAAAAGAAGTTTATAGA+AGG | + | chr3_1:61771364-61771383 | Msa0366810:CDS | 25.0% |
| !! | TTTTACACTTACGAGATATA+TGG | + | chr3_1:61771484-61771503 | Msa0366810:CDS | 25.0% |
| ! | TTTACACTTACGAGATATAT+GGG | + | chr3_1:61771485-61771504 | Msa0366810:CDS | 25.0% |
| ! | ATGCAATATAAACAGAAACA+TGG | + | chr3_1:61771622-61771641 | Msa0366810:CDS | 25.0% |
| GTTTGACAAGAAATAAAACG+TGG | - | chr3_1:61768983-61769002 | None:intergenic | 30.0% | |
| !!! | ATGTGGTTTTGTTGGATTTT+TGG | + | chr3_1:61769115-61769134 | Msa0366810:CDS | 30.0% |
| TTCCATTATGAATCAAAACC+GGG | - | chr3_1:61769269-61769288 | None:intergenic | 30.0% | |
| ! | TGAATTCAGTAGTTTAGGTT+TGG | - | chr3_1:61769501-61769520 | None:intergenic | 30.0% |
| ! | CTTTTACATGAATAAAGGGA+CGG | - | chr3_1:61769845-61769864 | None:intergenic | 30.0% |
| CAAAGTCAATTCTATATCTC+TGG | + | chr3_1:61770020-61770039 | Msa0366810:intron | 30.0% | |
| CCAATTCAAAAGAAGAACAA+GGG | - | chr3_1:61770958-61770977 | None:intergenic | 30.0% | |
| !! | CCATTTTAGAAGTAGAACAT+TGG | - | chr3_1:61770796-61770815 | None:intergenic | 30.0% |
| ! | CCAATGTTCTACTTCTAAAA+TGG | + | chr3_1:61770335-61770354 | Msa0366810:intron | 30.0% |
| ! | CCAATAAGAAGCACATAAAA+TGG | - | chr3_1:61770647-61770666 | None:intergenic | 30.0% |
| ! | CCATTTTATGTGCTTCTTAT+TGG | + | chr3_1:61770644-61770663 | Msa0366810:intron | 30.0% |
| ! | CCAATGTTCTACTTCTAAAA+TGG | - | chr3_1:61770335-61770354 | None:intergenic | 30.0% |
| !! | CCATTTTAGAAGTAGAACAT+TGG | + | chr3_1:61770796-61770815 | Msa0366810:intron | 30.0% |
| CCAATTCAAAAGAAGAACAA+GGG | + | chr3_1:61770958-61770977 | Msa0366810:intron | 30.0% | |
| ! | GTATCATGGCTTAATTTTGT+TGG | + | chr3_1:61771271-61771290 | Msa0366810:intron | 30.0% |
| TGTTGGATTCTAATTGATGT+AGG | + | chr3_1:61771288-61771307 | Msa0366810:intron | 30.0% | |
| AAGTCATCTCCATCAAAATA+TGG | - | chr3_1:61771424-61771443 | None:intergenic | 30.0% | |
| !!! | TATTTTGATGGAGATGACTT+TGG | + | chr3_1:61771424-61771443 | Msa0366810:CDS | 30.0% |
| !! | ATTTTGATGGAGATGACTTT+GGG | + | chr3_1:61771425-61771444 | Msa0366810:CDS | 30.0% |
| ! | CAAAACCATAGATTTTGTGA+GGG | - | chr3_1:61771600-61771619 | None:intergenic | 30.0% |
| ! | CTAGAATAGAGATTTTGTTG+TGG | + | chr3_1:61771646-61771665 | Msa0366810:exon | 30.0% |
| CATCTGATTATAAGCTAAGA+CGG | + | chr3_1:61771822-61771841 | Msa0366810:three_prime_UTR | 30.0% | |
| AATGAGAGTGAAAATCGCTT+TGG | + | chr3_1:61769152-61769171 | Msa0366810:CDS | 35.0% | |
| !! | AAAATCGCTTTGGAAGAGAA+GGG | + | chr3_1:61769162-61769181 | Msa0366810:CDS | 35.0% |
| !!! | ACCGGGATTTTTTTGTAAAC+CGG | - | chr3_1:61769252-61769271 | None:intergenic | 35.0% |
| !!! | ATCCCGGTTTTGATTCATAA+TGG | + | chr3_1:61769264-61769283 | Msa0366810:CDS | 35.0% |
| TTGAGTACATTGATGAAGCT+TGG | + | chr3_1:61769316-61769335 | Msa0366810:CDS | 35.0% | |
| AATGTAATCTCCCCAAAACT+TGG | - | chr3_1:61769391-61769410 | None:intergenic | 35.0% | |
| ! | ATTCAGTAGTTTAGGTTTGG+AGG | - | chr3_1:61769498-61769517 | None:intergenic | 35.0% |
| !!! | ATTTTTGTAGTGTCGACTCA+AGG | + | chr3_1:61769714-61769733 | Msa0366810:intron | 35.0% |
| !!! | TTTTTGTAGTGTCGACTCAA+GGG | + | chr3_1:61769715-61769734 | Msa0366810:intron | 35.0% |
| AGAACAAGGTTGAATATACG+TGG | - | chr3_1:61769792-61769811 | None:intergenic | 35.0% | |
| CGTATATTCAACCTTGTTCT+AGG | + | chr3_1:61769792-61769811 | Msa0366810:intron | 35.0% | |
| AATAAGTGAGACCTAGAACA+AGG | - | chr3_1:61769806-61769825 | None:intergenic | 35.0% | |
| ! | CCCTTGTTCTTCTTTTGAAT+TGG | + | chr3_1:61770173-61770192 | Msa0366810:intron | 35.0% |
| GCCAATTCAAAAGAAGAACA+AGG | - | chr3_1:61770957-61770976 | None:intergenic | 35.0% | |
| GCAGAGAATGGTTGAAAAAA+TGG | - | chr3_1:61770927-61770946 | None:intergenic | 35.0% | |
| !!! | TTGTTGCTTTTCTTTGGCAT+AGG | + | chr3_1:61770466-61770485 | Msa0366810:intron | 35.0% |
| CGTACATGCAATAGAACAAA+GGG | - | chr3_1:61770531-61770550 | None:intergenic | 35.0% | |
| TCGTACATGCAATAGAACAA+AGG | - | chr3_1:61770532-61770551 | None:intergenic | 35.0% | |
| GTATAACTGTATGGACACTT+TGG | - | chr3_1:61770563-61770582 | None:intergenic | 35.0% | |
| ! | AAGTGGAGAGTATAACTGTA+TGG | - | chr3_1:61770572-61770591 | None:intergenic | 35.0% |
| GCAGAGAATGGTTGAAAAAA+TGG | + | chr3_1:61770927-61770946 | Msa0366810:intron | 35.0% | |
| GCCAATTCAAAAGAAGAACA+AGG | + | chr3_1:61770957-61770976 | Msa0366810:intron | 35.0% | |
| ! | CCCTTGTTCTTCTTTTGAAT+TGG | - | chr3_1:61770173-61770192 | None:intergenic | 35.0% |
| ! | GAGTTATTCATAGGGTATCA+TGG | + | chr3_1:61771257-61771276 | Msa0366810:intron | 35.0% |
| !! | GGAGACAAACCATATTTTGA+TGG | + | chr3_1:61771412-61771431 | Msa0366810:CDS | 35.0% |
| GTGTAAAACCAACTAGTGAA+GGG | - | chr3_1:61771472-61771491 | None:intergenic | 35.0% | |
| AGTGTAAAACCAACTAGTGA+AGG | - | chr3_1:61771473-61771492 | None:intergenic | 35.0% | |
| ! | CTCTTTTTCCATACACCTTT+TGG | - | chr3_1:61771554-61771573 | None:intergenic | 35.0% |
| ! | GCAAAACCATAGATTTTGTG+AGG | - | chr3_1:61771601-61771620 | None:intergenic | 35.0% |
| !! | AGATTTTGTTGTGGATTGCA+TGG | + | chr3_1:61771655-61771674 | Msa0366810:three_prime_UTR | 35.0% |
| !! | GATTTTGTTGTGGATTGCAT+GGG | + | chr3_1:61771656-61771675 | Msa0366810:three_prime_UTR | 35.0% |
| CTTCATACAAAGTTCTTCTC+AGG | - | chr3_1:61771684-61771703 | None:intergenic | 35.0% | |
| ACATACAAGCAAGCTACACA+TGG | + | chr3_1:61769083-61769102 | Msa0366810:exon | 40.0% | |
| !!! | TGAGGACAATGTGGTTTTGT+TGG | + | chr3_1:61769107-61769126 | Msa0366810:CDS | 40.0% |
| !! | GAAAATCGCTTTGGAAGAGA+AGG | + | chr3_1:61769161-61769180 | Msa0366810:CDS | 40.0% |
| !! | TCTGCTTTTAGAGATGAACC+CGG | + | chr3_1:61769230-61769249 | Msa0366810:CDS | 40.0% |
| !!! | CCGGGATTTTTTTGTAAACC+GGG | - | chr3_1:61769251-61769270 | None:intergenic | 40.0% |
| CCCGGTTTACAAAAAAATCC+CGG | + | chr3_1:61769248-61769267 | Msa0366810:CDS | 40.0% | |
| ! | TGGCTTGTGATCGTTTGTAA+GGG | - | chr3_1:61769371-61769390 | None:intergenic | 40.0% |
| !! | TTGGCTTGTGATCGTTTGTA+AGG | - | chr3_1:61769372-61769391 | None:intergenic | 40.0% |
| ! | AACGATCACAAGCCAAGTTT+TGG | + | chr3_1:61769376-61769395 | Msa0366810:CDS | 40.0% |
| ! | ACGATCACAAGCCAAGTTTT+GGG | + | chr3_1:61769377-61769396 | Msa0366810:CDS | 40.0% |
| AAGAACACACAGAGTTGTAC+AGG | - | chr3_1:61770899-61770918 | None:intergenic | 40.0% | |
| ! | TTCCTGCTTGTCCTTTGAAA+TGG | + | chr3_1:61770392-61770411 | Msa0366810:intron | 40.0% |
| !!! | ATGTTGCGGAAGTGTTTTTG+TGG | + | chr3_1:61770605-61770624 | Msa0366810:intron | 40.0% |
| !!! | GGAAGTGTTTTTGTGGCTTA+TGG | + | chr3_1:61770612-61770631 | Msa0366810:intron | 40.0% |
| ! | TTTTTGTGGCTTATGGCTGT+CGG | + | chr3_1:61770619-61770638 | Msa0366810:intron | 40.0% |
| ! | TTCCTGCTTGTCCTTTGAAA+TGG | - | chr3_1:61770392-61770411 | None:intergenic | 40.0% |
| AAGAACACACAGAGTTGTAC+AGG | + | chr3_1:61770899-61770918 | Msa0366810:intron | 40.0% | |
| ! | CTTTCATGTGATTGCCACTT+GGG | - | chr3_1:61771160-61771179 | None:intergenic | 40.0% |
| TGTAGGTATACAGCATTCGA+AGG | + | chr3_1:61771305-61771324 | Msa0366810:intron | 40.0% | |
| ATTCGAAGGAAGCTATGGAA+AGG | + | chr3_1:61771319-61771338 | Msa0366810:CDS | 40.0% | |
| AAGGAAGCTATGGAAAGGAA+AGG | + | chr3_1:61771324-61771343 | Msa0366810:CDS | 40.0% | |
| AGGAAAGGTTGAAGAACAAG+AGG | + | chr3_1:61771339-61771358 | Msa0366810:CDS | 40.0% | |
| AAGGTTGAAGAACAAGAGGA+AGG | + | chr3_1:61771343-61771362 | Msa0366810:CDS | 40.0% | |
| ! | AAGACTCTAGAAGATGAGCT+TGG | + | chr3_1:61771391-61771410 | Msa0366810:CDS | 40.0% |
| TGACTTTGGGTATGTAGATG+TGG | + | chr3_1:61771438-61771457 | Msa0366810:CDS | 40.0% | |
| CTCTTATACCCTTCACTAGT+TGG | + | chr3_1:61771461-61771480 | Msa0366810:CDS | 40.0% | |
| ! | GTGTATGGAAAAAGAGTGTG+TGG | + | chr3_1:61771558-61771577 | Msa0366810:CDS | 40.0% |
| ! | ACCATAGATTTTGTGAGGGT+GGG | - | chr3_1:61771596-61771615 | None:intergenic | 40.0% |
| ! | AACCATAGATTTTGTGAGGG+TGG | - | chr3_1:61771597-61771616 | None:intergenic | 40.0% |
| ACTCTCATTGCATACACGCT+TGG | - | chr3_1:61769141-61769160 | None:intergenic | 45.0% | |
| ! | CTCTAAAAGCAGAGAGCTCT+TGG | - | chr3_1:61769223-61769242 | None:intergenic | 45.0% |
| GATCGTTTGTAAGGGTCAGA+GGG | - | chr3_1:61769363-61769382 | None:intergenic | 45.0% | |
| TGATCGTTTGTAAGGGTCAG+AGG | - | chr3_1:61769364-61769383 | None:intergenic | 45.0% | |
| ! | CGATCACAAGCCAAGTTTTG+GGG | + | chr3_1:61769378-61769397 | Msa0366810:CDS | 45.0% |
| ! | GTACAGGCTTTTGCAGAGAA+TGG | - | chr3_1:61770915-61770934 | None:intergenic | 45.0% |
| !! | TCCTTTGAAATGGCGAGCAA+GGG | + | chr3_1:61770402-61770421 | Msa0366810:intron | 45.0% |
| ATACTCTCCACTTCGTCCAT+TGG | + | chr3_1:61770579-61770598 | Msa0366810:intron | 45.0% | |
| ACATCAACCAATGGACGAAG+TGG | - | chr3_1:61770589-61770608 | None:intergenic | 45.0% | |
| ! | TCGTCCATTGGTTGATGTTG+CGG | + | chr3_1:61770591-61770610 | Msa0366810:intron | 45.0% |
| ACTTCCGCAACATCAACCAA+TGG | - | chr3_1:61770598-61770617 | None:intergenic | 45.0% | |
| ! | GTGCTTCTTATTGGTCTGCT+TGG | + | chr3_1:61770653-61770672 | Msa0366810:intron | 45.0% |
| !! | TCCTTTGAAATGGCGAGCAA+GGG | - | chr3_1:61770402-61770421 | None:intergenic | 45.0% |
| ! | GTACAGGCTTTTGCAGAGAA+TGG | + | chr3_1:61770915-61770934 | Msa0366810:intron | 45.0% |
| ATCCATACTTCAAGCCCAAG+TGG | + | chr3_1:61771143-61771162 | Msa0366810:intron | 45.0% | |
| CCTTTCATGTGATTGCCACT+TGG | - | chr3_1:61771161-61771180 | None:intergenic | 45.0% | |
| CCAAGTGGCAATCACATGAA+AGG | + | chr3_1:61771158-61771177 | Msa0366810:intron | 45.0% | |
| ACAGCATTCGAAGGAAGCTA+TGG | + | chr3_1:61771314-61771333 | Msa0366810:CDS | 45.0% | |
| !! | GAAAGAGTGTCCTAAGCTTG+TGG | + | chr3_1:61771522-61771541 | Msa0366810:CDS | 45.0% |
| ! | CCATAGATTTTGTGAGGGTG+GGG | - | chr3_1:61771595-61771614 | None:intergenic | 45.0% |
| !!! | TTTTAAAAAAATTATATGTT+TGG | - | chr3_1:61771235-61771254 | None:intergenic | 5.0% |
| AAGCAAGCTACACATGGCTG+AGG | + | chr3_1:61769089-61769108 | Msa0366810:exon | 50.0% | |
| ACACATGGCTGAGGACAATG+TGG | + | chr3_1:61769098-61769117 | Msa0366810:exon | 50.0% | |
| CGCCATTTCAAAGGACAAGC+AGG | - | chr3_1:61770737-61770756 | None:intergenic | 50.0% | |
| !! | GTCCTTTGAAATGGCGAGCA+AGG | + | chr3_1:61770401-61770420 | Msa0366810:intron | 50.0% |
| !! | GTCCTTTGAAATGGCGAGCA+AGG | - | chr3_1:61770401-61770420 | None:intergenic | 50.0% |
| CGCCATTTCAAAGGACAAGC+AGG | + | chr3_1:61770737-61770756 | Msa0366810:intron | 50.0% | |
| ! | TGCCACTTGGGCTTGAAGTA+TGG | - | chr3_1:61771148-61771167 | None:intergenic | 50.0% |
| AGTGTCCTAAGCTTGTGGCT+TGG | + | chr3_1:61771527-61771546 | Msa0366810:CDS | 50.0% | |
| GTGTCCTAAGCTTGTGGCTT+GGG | + | chr3_1:61771528-61771547 | Msa0366810:CDS | 50.0% | |
| CCCCACCCTCACAAAATCTA+TGG | + | chr3_1:61771592-61771611 | Msa0366810:CDS | 50.0% | |
| GGGTCAGAGGGCAAAAGAGA+AGG | - | chr3_1:61769351-61769370 | None:intergenic | 55.0% | |
| GCCCTTGCTCGCCATTTCAA+AGG | - | chr3_1:61770728-61770747 | None:intergenic | 55.0% | |
| GCCCTTGCTCGCCATTTCAA+AGG | + | chr3_1:61770728-61770747 | Msa0366810:intron | 55.0% | |
| TTGGCCCAAGCCACAAGCTT+AGG | - | chr3_1:61771535-61771554 | None:intergenic | 55.0% | |
| ! | AGCTTGTGGCTTGGGCCAAA+AGG | + | chr3_1:61771536-61771555 | Msa0366810:CDS | 55.0% |
| ! | GGCTTGGGCCAAAAGGTGTA+TGG | + | chr3_1:61771543-61771562 | Msa0366810:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 61768965 | 61771916 | 61768965 | ID=Msa0366810;Name=Msa0366810 |
| chr3_1 | mRNA | 61768965 | 61771916 | 61768965 | ID=Msa0366810-mRNA-1;Parent=Msa0366810;Name=Msa0366810-mRNA-1;_AED=0.16;_eAED=0.16;_QI=137|1|1|1|1|1|2|262|220 |
| chr3_1 | exon | 61768965 | 61769419 | 61768965 | ID=Msa0366810-mRNA-1:exon:11998;Parent=Msa0366810-mRNA-1 |
| chr3_1 | exon | 61771310 | 61771916 | 61771310 | ID=Msa0366810-mRNA-1:exon:11999;Parent=Msa0366810-mRNA-1 |
| chr3_1 | five_prime_UTR | 61768965 | 61769101 | 61768965 | ID=Msa0366810-mRNA-1:five_prime_utr;Parent=Msa0366810-mRNA-1 |
| chr3_1 | CDS | 61769102 | 61769419 | 61769102 | ID=Msa0366810-mRNA-1:cds;Parent=Msa0366810-mRNA-1 |
| chr3_1 | CDS | 61771310 | 61771654 | 61771310 | ID=Msa0366810-mRNA-1:cds;Parent=Msa0366810-mRNA-1 |
| chr3_1 | three_prime_UTR | 61771655 | 61771916 | 61771655 | ID=Msa0366810-mRNA-1:three_prime_utr;Parent=Msa0366810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
