AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0417520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417520 MtrunA17_Chr3g0115061 80.075 532 34 5 1 522 1 470 0.0 835
Msa0417520 MtrunA17_Chr8g0375381 24.422 303 156 12 13 261 8 291 4.01e-12 68.2
Msa0417520 MtrunA17_Chr3g0128421 27.500 160 95 4 172 329 459 599 4.14e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417520 AT2G17900.1 51.583 537 184 6 1 523 6 480 0.0 536

Find 135 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTCTTTAATATTGATTTC+AGG 0.234425 3_2:+64741370 None:intergenic
CTCTTACTAACCCACATTCT+TGG 0.284514 3_2:+64739840 None:intergenic
GGTTAAGCAGAATATGAGTT+TGG 0.325261 3_2:-64742679 Msa0417520:five_prime_UTR
ACTCTGGAAATTTGCTTAGA+TGG 0.326933 3_2:-64737202 Msa0417520:three_prime_UTR
ACTTTACCATATTTAACTTC+TGG 0.333208 3_2:+64737176 None:intergenic
CAAATCATTATATAACATTA+AGG 0.333564 3_2:+64737086 None:intergenic
TGATCTTGATATAGGTATCT+TGG 0.355193 3_2:-64737484 Msa0417520:intron
ATACTGAAAATTTATATGTT+GGG 0.361187 3_2:-64742716 Msa0417520:five_prime_UTR
ATCAATAGTTCCTTCACTAA+TGG 0.370780 3_2:+64737388 None:intergenic
AAGTTAAATATGGTAAAGTA+TGG 0.374345 3_2:-64737172 Msa0417520:three_prime_UTR
AAATGAACTATATTCTCAAA+TGG 0.377064 3_2:+64736997 None:intergenic
TTGGGTATCATTTAATTAAC+GGG 0.383398 3_2:-64742660 Msa0417520:five_prime_UTR
AGTCCGAGTAAAATAAATAA+AGG 0.391148 3_2:-64742597 Msa0417520:five_prime_UTR
AATACTGAAAATTTATATGT+TGG 0.391610 3_2:-64742717 Msa0417520:five_prime_UTR
GGTTTCTTGCTCCGCACAAC+TGG 0.393388 3_2:-64740035 Msa0417520:intron
CCAGCTGTTCACCCTTTGCT+TGG 0.395564 3_2:-64737981 Msa0417520:CDS
AATGAACTATATTCTCAAAT+GGG 0.396479 3_2:+64736998 None:intergenic
TGGTCTCCAGAAGTTAAATA+TGG 0.398324 3_2:-64737182 Msa0417520:three_prime_UTR
CGAGAAAATGCAATTCTAGA+AGG 0.401251 3_2:-64740086 Msa0417520:CDS
CTACTACTATTGCTACTATT+CGG 0.404392 3_2:+64742807 Msa0417530:intron
GATGGCATACTTTGATAGAT+TGG 0.406419 3_2:+64738786 None:intergenic
TGGTTACCTGTGATTGATAA+TGG 0.407535 3_2:+64741147 None:intergenic
TTTGGGTATCATTTAATTAA+CGG 0.412649 3_2:-64742661 Msa0417520:five_prime_UTR
TGACAGTGAGTTAAGACCTC+TGG 0.417510 3_2:-64741194 Msa0417520:CDS
ATACTTGTGGAAAACTTGAA+TGG 0.426325 3_2:-64737947 Msa0417520:intron
CAAGTTAGTGGACGCATTAG+TGG 0.432256 3_2:-64741559 Msa0417520:CDS
AGATTGTAATCACATTCATA+TGG 0.433519 3_2:-64742873 Msa0417520:five_prime_UTR
TGCATCAAATTGATCGAGAA+AGG 0.433641 3_2:+64739501 None:intergenic
GTTAAGCAGAATATGAGTTT+GGG 0.438922 3_2:-64742678 Msa0417520:five_prime_UTR
AATTTGAACTTTCCAGTAGC+AGG 0.443592 3_2:-64737044 Msa0417520:three_prime_UTR
ACCGATATCACAGCTGCTTC+TGG 0.444577 3_2:-64737290 Msa0417520:three_prime_UTR
GAGCGAAGTGAAGACGGAAA+TGG 0.447764 3_2:-64742546 Msa0417520:exon
GAGTTAAGACCTCTGGGAAC+AGG 0.450124 3_2:-64741187 Msa0417520:CDS
CCAAGCAAAGGGTGAACAGC+TGG 0.455085 3_2:+64737981 None:intergenic
TTTGCAGTCATTAATGAAGC+TGG 0.455096 3_2:-64738850 Msa0417520:intron
GTTCTTCAATTCACAACGTC+AGG 0.457095 3_2:+64742772 Msa0417530:CDS
GGGGACAAACACAAGTGAAT+AGG 0.464095 3_2:+64740253 None:intergenic
TGCTCAAACTTTATCTTCGA+AGG 0.464527 3_2:-64741888 Msa0417520:CDS
CTGTGCAACATGTGCCTAAA+GGG 0.466513 3_2:-64740989 Msa0417520:CDS
TACTGAAAATTTATATGTTG+GGG 0.468405 3_2:-64742715 Msa0417520:five_prime_UTR
AGTTTCCACCATCTCAGAAA+AGG 0.468581 3_2:-64742486 Msa0417520:CDS
ATGATTGCACTTGTTTACTC+TGG 0.471129 3_2:-64737218 Msa0417520:three_prime_UTR
CATTAATGAAGCTGGAGTAT+TGG 0.474560 3_2:-64738842 Msa0417520:CDS
TACAAACAAGCCACTGGAGC+TGG 0.475092 3_2:-64737267 Msa0417520:three_prime_UTR
ACATTAAGGCTGGCTGATGA+AGG 0.476956 3_2:+64737100 None:intergenic
AATAAATAAAGGAAAGAAAG+TGG 0.480171 3_2:-64742586 Msa0417520:five_prime_UTR
ACCAGAAGCAGCTGTGATAT+CGG 0.482268 3_2:+64737289 None:intergenic
TTGAAGAAAATCGCAGAGAA+AGG 0.485044 3_2:-64742741 Msa0417520:five_prime_UTR
ATAGATACCTCAGTCCCTTT+AGG 0.485587 3_2:+64740975 None:intergenic
TTGAGTTGGAACACAAACAT+AGG 0.489336 3_2:+64742306 None:intergenic
CTTGCAGCTAAAATGTAAAA+CGG 0.490916 3_2:+64736971 None:intergenic
TTGTTTCCATTATCAATCAC+AGG 0.492390 3_2:-64741153 Msa0417520:intron
GGCTTGCAATATTATACTTG+TGG 0.493062 3_2:-64737960 Msa0417520:CDS
CCTTAGTATATCCACTGCCT+TGG 0.497065 3_2:+64737432 None:intergenic
GAACACAAACATAGGGCTCT+TGG 0.499515 3_2:+64742314 None:intergenic
TTTGTAAGAGGCTTCTGCAC+GGG 0.511710 3_2:+64737351 None:intergenic
GATCATTCCAAGCACTGCTA+TGG 0.511797 3_2:-64741589 Msa0417520:CDS
TCTTAACTCACTGTCACAAA+TGG 0.513188 3_2:+64741201 None:intergenic
CTCATATTCTGCTTAACCTC+GGG 0.513380 3_2:+64742684 Msa0417530:CDS
GCGTTTCAATGCCAAGAATG+TGG 0.517194 3_2:-64739851 Msa0417520:CDS
TAAATCATTGACCAAGGCAG+TGG 0.519906 3_2:-64737443 Msa0417520:CDS
AAGCACTGTGACTCGACAAA+AGG 0.521126 3_2:-64740292 Msa0417520:CDS
TTGTCCCCTCTGTTCTAAAG+TGG 0.523368 3_2:-64740238 Msa0417520:intron
GAAGGAACTATTGATGATGT+TGG 0.529169 3_2:-64737380 Msa0417520:CDS
CCAAGGCAGTGGATATACTA+AGG 0.529257 3_2:-64737432 Msa0417520:CDS
ATAAACGAGCGAAGTGAAGA+CGG 0.530887 3_2:-64742552 Msa0417520:five_prime_UTR
GCATCAAATTGATCGAGAAA+GGG 0.531480 3_2:+64739502 None:intergenic
ATAAGTTATATAGAGACAGC+TGG 0.532422 3_2:-64740315 Msa0417520:CDS
AGGATACTGCCACTAGAAGA+AGG 0.532430 3_2:+64739755 None:intergenic
AAGTACCACTTTAGAACAGA+GGG 0.532968 3_2:+64740233 None:intergenic
AAATATGGTAAAGTATGGAT+TGG 0.533262 3_2:-64737167 Msa0417520:three_prime_UTR
GTTTCCACCATCTCAGAAAA+GGG 0.534104 3_2:-64742485 Msa0417520:CDS
TCATTATATAACATTAAGGC+TGG 0.534161 3_2:+64737090 None:intergenic
TCACTTCGCTCGTTTATCAT+CGG 0.534369 3_2:+64742558 None:intergenic
TGAAGAAAATCGCAGAGAAA+GGG 0.536043 3_2:-64742740 Msa0417520:five_prime_UTR
TGAGTTGGAACACAAACATA+GGG 0.536392 3_2:+64742307 None:intergenic
TGACATCAAAGAGGAGCAGC+TGG 0.537970 3_2:-64741440 Msa0417520:CDS
CTGCCTACCCAATTCAGTGT+TGG 0.538934 3_2:-64741042 Msa0417520:CDS
TAATATTGCAAGCCAAGCAA+AGG 0.544619 3_2:+64737969 None:intergenic
GCTTCTAAGCCTTCTTCTAG+TGG 0.547425 3_2:-64739764 Msa0417520:CDS
GATTTAAACAATCAATGAAA+GGG 0.549170 3_2:-64736949 Msa0417520:three_prime_UTR
CGTTTCAATGCCAAGAATGT+GGG 0.549729 3_2:-64739850 Msa0417520:CDS
AAGTTTGAGCATCAACCGTA+TGG 0.550663 3_2:+64741900 None:intergenic
CGAAGTGAAGACGGAAATGG+AGG 0.553097 3_2:-64742543 Msa0417520:exon
CAAAAGAAGAGTAGAATGGC+GGG 0.553721 3_2:-64737321 Msa0417520:exon
TAGTTGTCCATAGCAGTGCT+TGG 0.554117 3_2:+64741582 None:intergenic
TATGGACAACTACAAGTTAG+TGG 0.554822 3_2:-64741571 Msa0417520:CDS
AGATTTAAACAATCAATGAA+AGG 0.561410 3_2:-64736950 Msa0417520:three_prime_UTR
GACAGTGAGTTAAGACCTCT+GGG 0.564404 3_2:-64741193 Msa0417520:CDS
TGATTGATAATGGAAACAAC+AGG 0.566394 3_2:+64741157 None:intergenic
CATACTTTGATAGATTGGTA+TGG 0.571289 3_2:+64738791 None:intergenic
CATGTAAGGTATTGTTGTGG+AGG 0.571446 3_2:-64738621 Msa0417520:intron
TTGAGCATCAACCGTATGGA+TGG 0.572598 3_2:+64741904 None:intergenic
TTGTACACTTAATACTGCAA+TGG 0.575595 3_2:-64741393 Msa0417520:CDS
TTGAATGTCAAGCACTCTCA+AGG 0.577097 3_2:-64741957 Msa0417520:CDS
AATATTGCAAGCCAAGCAAA+GGG 0.578542 3_2:+64737970 None:intergenic
TCATCAAAAGAAGAGTAGAA+TGG 0.582008 3_2:-64737325 Msa0417520:exon
AACTTCTATACTCAATCCGT+TGG 0.584081 3_2:-64738760 Msa0417520:CDS
ACTACTAGAGATTTCCACCC+AGG 0.592888 3_2:-64742449 Msa0417520:intron
GCTGTGCAACATGTGCCTAA+AGG 0.597001 3_2:-64740990 Msa0417520:CDS
TTCTGGTACAAACAAGCCAC+TGG 0.598173 3_2:-64737273 Msa0417520:three_prime_UTR
GCTGGTGTTGTATGCACAGA+TGG 0.598430 3_2:-64741422 Msa0417520:CDS
CATTAAGGCTGGCTGATGAA+GGG 0.599694 3_2:+64737101 None:intergenic
TACTCGGACTTGATCCGACC+CGG 0.601571 3_2:+64742610 None:intergenic
ATGAACTATATTCTCAAATG+GGG 0.607058 3_2:+64736999 None:intergenic
TTTAGGTCATACCAGTTGTG+CGG 0.607337 3_2:+64740024 None:intergenic
ACTCATATTCTGCTTAACCT+CGG 0.607813 3_2:+64742683 Msa0417530:CDS
GACAACGTGAGCATTTGCTA+AGG 0.614070 3_2:+64742251 None:intergenic
AATCATGTAAGGTATTGTTG+TGG 0.615090 3_2:-64738624 Msa0417520:CDS
AAGGAAATTGCAAGATGACA+AGG 0.615659 3_2:-64741869 Msa0417520:intron
ATTCTGTGATCCAGCTCCAG+TGG 0.617317 3_2:+64737257 None:intergenic
TACAAAGACTCCATTAGTGA+AGG 0.622523 3_2:-64737398 Msa0417520:CDS
ACTGAAAATTTATATGTTGG+GGG 0.624966 3_2:-64742714 Msa0417520:five_prime_UTR
ACTACACTTATGCCTCCTGA+TGG 0.626456 3_2:-64736890 None:intergenic
ATGTGGGTTAGTAAGAGACA+AGG 0.627932 3_2:-64739834 Msa0417520:CDS
CAATTTGATGCAAACACGAG+AGG 0.630016 3_2:-64739490 Msa0417520:CDS
ATTTGTAAGAGGCTTCTGCA+CGG 0.631187 3_2:+64737350 None:intergenic
AATCTGTTACACCATCCATA+CGG 0.635943 3_2:-64741915 Msa0417520:CDS
AAACCAACACTGAATTGGGT+AGG 0.637837 3_2:+64741039 None:intergenic
AGCTATTAAATCATTGACCA+AGG 0.641241 3_2:-64737449 Msa0417520:CDS
GATATACTAAGGATTACTCA+TGG 0.643148 3_2:-64737421 Msa0417520:CDS
CCATTCCGGAACTACCGGGT+CGG 0.643340 3_2:-64742624 Msa0417520:intron
GGAACTATTGATGATGTTGG+AGG 0.643675 3_2:-64737377 Msa0417520:CDS
TCAAAAGAAGAGTAGAATGG+CGG 0.649801 3_2:-64737322 Msa0417520:exon
TTGAGTATAGAAGTTTGCGA+TGG 0.651592 3_2:+64738768 None:intergenic
AGACATGTCTGACATCAAAG+AGG 0.653286 3_2:-64741449 Msa0417520:CDS
ACATGTGCCTAAAGGGACTG+AGG 0.674349 3_2:-64740982 Msa0417520:intron
CGTTGTGAATTGAAGAACAG+AGG 0.679980 3_2:-64742767 Msa0417520:five_prime_UTR
AGTCAGATTCTACCATCAGG+AGG 0.680431 3_2:+64736878 None:intergenic
ATGATATTCAGAAATCGGAG+TGG 0.685347 3_2:-64741993 Msa0417520:intron
TAAGTACCACTTTAGAACAG+AGG 0.686937 3_2:+64740232 None:intergenic
GCAACAACTGAAACTACCAA+CGG 0.690499 3_2:+64738744 None:intergenic
TAGGTATCTTGGAGACACAG+AGG 0.736759 3_2:-64737473 Msa0417520:CDS
GGATACAATCCTGTTCCCAG+AGG 0.760315 3_2:+64741178 None:intergenic
AGTACCACTTTAGAACAGAG+GGG 0.783095 3_2:+64740234 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATTTAAAACTATTTGA+CGG - chr3_2:64739369-64739388 Msa0417520:intron 10.0%
!!! TTTTGTTTTTAAATTATAGA+TGG - chr3_2:64739911-64739930 Msa0417520:intron 10.0%
!! AAAAAATTTCAAACTTATTT+AGG - chr3_2:64742866-64742885 Msa0417520:five_prime_UTR 10.0%
!! AATACTGAAAATTTATATGT+TGG - chr3_2:64737072-64737091 Msa0417520:three_prime_UTR 15.0%
!! ATACTGAAAATTTATATGTT+GGG - chr3_2:64737073-64737092 Msa0417520:three_prime_UTR 15.0%
!!! TTTCCTTTATTTATTTTACT+CGG + chr3_2:64737198-64737217 None:intergenic 15.0%
!!! TATATCAACTAATTTAAGAT+TGG + chr3_2:64738475-64738494 None:intergenic 15.0%
!!! TGTCATTTAAAGATTATTAA+TGG - chr3_2:64738907-64738926 Msa0417520:intron 15.0%
!!! TCAGTCTTATATTTATAAAA+AGG + chr3_2:64739846-64739865 None:intergenic 15.0%
!! ACTGAGATAAAAAAAATAAA+TGG - chr3_2:64739861-64739880 Msa0417520:CDS 15.0%
!! TATACTAATGAATAGATATA+CGG - chr3_2:64740547-64740566 Msa0417520:intron 15.0%
!! AAATCAATTATTGCATAAAT+GGG + chr3_2:64740878-64740897 None:intergenic 15.0%
!! AAAATCAATTATTGCATAAA+TGG + chr3_2:64740879-64740898 None:intergenic 15.0%
!! CAAATCATTATATAACATTA+AGG + chr3_2:64742706-64742725 Msa0417530:CDS 15.0%
!! TACTGAAAATTTATATGTTG+GGG - chr3_2:64737074-64737093 Msa0417520:three_prime_UTR 20.0%
!! TTTGGGTATCATTTAATTAA+CGG - chr3_2:64737128-64737147 Msa0417520:three_prime_UTR 20.0%
!! AATAAATAAAGGAAAGAAAG+TGG - chr3_2:64737203-64737222 Msa0417520:three_prime_UTR 20.0%
!!! AATGAATGATGTTTTTACTT+TGG - chr3_2:64737423-64737442 Msa0417520:CDS 20.0%
!! TATGATATGATATGTTATTG+TGG - chr3_2:64737765-64737784 Msa0417520:intron 20.0%
!!! TTTTGATGATATTCAGAAAT+CGG - chr3_2:64737791-64737810 Msa0417520:intron 20.0%
!!! ATGTGAACAAAATTTAGTTT+TGG - chr3_2:64737946-64737965 Msa0417520:intron 20.0%
!!! TTTAGTTTTGGTTAATGTAT+TGG - chr3_2:64737958-64737977 Msa0417520:CDS 20.0%
!!! TTATCTTAAAGTTCTTTTTG+AGG - chr3_2:64738073-64738092 Msa0417520:intron 20.0%
!! AAATACAGTAAAGCTTAAAA+AGG + chr3_2:64738263-64738282 None:intergenic 20.0%
!!! ATCTCTTTAATATTGATTTC+AGG + chr3_2:64738422-64738441 None:intergenic 20.0%
!!! GTATAGTAAGACATTATTTT+CGG + chr3_2:64738686-64738705 None:intergenic 20.0%
!!! TTTTTGTAAAAGTTTCAGTT+AGG - chr3_2:64739307-64739326 Msa0417520:intron 20.0%
!!! TTTTGTAAAAGTTTCAGTTA+GGG - chr3_2:64739308-64739327 Msa0417520:intron 20.0%
!!! AATCTGAAATATTTTCTTGT+TGG - chr3_2:64739591-64739610 Msa0417520:intron 20.0%
!! CATAGTAATTTCAGTAAAAT+TGG - chr3_2:64739622-64739641 Msa0417520:intron 20.0%
!! TAAAATTGGAATGTTATCAT+TGG - chr3_2:64739636-64739655 Msa0417520:intron 20.0%
!! CTTATATTTATAAAAAGGAG+AGG + chr3_2:64739841-64739860 None:intergenic 20.0%
!!! TTTTCTTTCTTATCCTTTAA+TGG - chr3_2:64740130-64740149 Msa0417520:intron 20.0%
!! TGATAATCTACATATAGTTA+AGG + chr3_2:64740213-64740232 None:intergenic 20.0%
!!! TTTCTCGATCATTTTATATA+TGG + chr3_2:64740247-64740266 None:intergenic 20.0%
!! ACACATACATATATAGAAAA+GGG + chr3_2:64740738-64740757 None:intergenic 20.0%
!!! ATTTTAGCAAAAATCATGTA+AGG - chr3_2:64741154-64741173 Msa0417520:CDS 20.0%
!!! TCACACAGAATTATATTTTT+AGG - chr3_2:64741300-64741319 Msa0417520:intron 20.0%
!!! CACACAGAATTATATTTTTA+GGG - chr3_2:64741301-64741320 Msa0417520:intron 20.0%
!!! ACACAGAATTATATTTTTAG+GGG - chr3_2:64741302-64741321 Msa0417520:intron 20.0%
!! GATTCAATGTAAATTATTGA+AGG + chr3_2:64741446-64741465 None:intergenic 20.0%
!!! CATAACTTTCCATAATTTTT+GGG + chr3_2:64741540-64741559 None:intergenic 20.0%
!!! TCTTAAATTTGTTTCATAGA+TGG - chr3_2:64741586-64741605 Msa0417520:CDS 20.0%
!! TATTACTATTGATAAATTGC+TGG + chr3_2:64742168-64742187 None:intergenic 20.0%
!! AAGTTAAATATGGTAAAGTA+TGG - chr3_2:64742617-64742636 Msa0417520:intron 20.0%
!! AATGAACTATATTCTCAAAT+GGG + chr3_2:64742794-64742813 Msa0417530:intron 20.0%
!! AAATGAACTATATTCTCAAA+TGG + chr3_2:64742795-64742814 Msa0417530:intron 20.0%
!! AGATTTAAACAATCAATGAA+AGG - chr3_2:64742839-64742858 Msa0417520:five_prime_UTR 20.0%
!! GATTTAAACAATCAATGAAA+GGG - chr3_2:64742840-64742859 Msa0417520:five_prime_UTR 20.0%
! AGATTGTAATCACATTCATA+TGG - chr3_2:64736916-64736935 Msa0417520:three_prime_UTR 25.0%
! ACTGAAAATTTATATGTTGG+GGG - chr3_2:64737075-64737094 Msa0417520:three_prime_UTR 25.0%
! TTGGGTATCATTTAATTAAC+GGG - chr3_2:64737129-64737148 Msa0417520:three_prime_UTR 25.0%
!!! TTTAATTAACGGGTTAGAAT+AGG - chr3_2:64737139-64737158 Msa0417520:three_prime_UTR 25.0%
!!! TTAATTAACGGGTTAGAATA+GGG - chr3_2:64737140-64737159 Msa0417520:three_prime_UTR 25.0%
! AGTCCGAGTAAAATAAATAA+AGG - chr3_2:64737192-64737211 Msa0417520:three_prime_UTR 25.0%
!! TTTCTTATCATAAGTGTTGT+CGG - chr3_2:64737604-64737623 Msa0417520:intron 25.0%
! ACATTGACACTTATGATAAA+AGG + chr3_2:64737659-64737678 None:intergenic 25.0%
! ACTTCATAAAATTGCATTTG+AGG - chr3_2:64738045-64738064 Msa0417520:intron 25.0%
! CTTCATAAAATTGCATTTGA+GGG - chr3_2:64738046-64738065 Msa0417520:intron 25.0%
! CCTACAATTATGAAACAATA+TGG + chr3_2:64738970-64738989 None:intergenic 25.0%
! CCATATTGTTTCATAATTGT+AGG - chr3_2:64738967-64738986 Msa0417520:intron 25.0%
! TTCTATATATCTACAAGCAT+AGG - chr3_2:64739053-64739072 Msa0417520:intron 25.0%
!! ATTTAAAACTATTTGACGGA+TGG - chr3_2:64739373-64739392 Msa0417520:intron 25.0%
!!! TTCAGTTAAGTTAGTTTTGA+AGG - chr3_2:64739663-64739682 Msa0417520:intron 25.0%
!!! TCAGTTAAGTTAGTTTTGAA+GGG - chr3_2:64739664-64739683 Msa0417520:intron 25.0%
!! AAGATTATGATGTTCCTTTT+AGG + chr3_2:64739785-64739804 None:intergenic 25.0%
! AAAAAAGATTGGAATGCAAA+AGG + chr3_2:64740114-64740133 None:intergenic 25.0%
! GGATAAGAAAGAAAAAAGAT+TGG + chr3_2:64740125-64740144 None:intergenic 25.0%
! AAATCAATTTCCTTTGAACA+TGG + chr3_2:64740165-64740184 None:intergenic 25.0%
! TAATGAATAGATATACGGAT+TGG - chr3_2:64740552-64740571 Msa0417520:intron 25.0%
!!! GATTGGTTTATATTCTACTT+TGG - chr3_2:64740569-64740588 Msa0417520:intron 25.0%
! CACACATACATATATAGAAA+AGG + chr3_2:64740739-64740758 None:intergenic 25.0%
! AGATTAAATCCACAATGAAA+AGG - chr3_2:64741197-64741216 Msa0417520:CDS 25.0%
!!! CACAGAATTATATTTTTAGG+GGG - chr3_2:64741303-64741322 Msa0417520:intron 25.0%
!!! ACAGAATTATATTTTTAGGG+GGG - chr3_2:64741304-64741323 Msa0417520:intron 25.0%
!!! ACTTTTGATTGATTAAACAC+AGG + chr3_2:64741475-64741494 None:intergenic 25.0%
! TGTGTTTAATCAATCAAAAG+TGG - chr3_2:64741474-64741493 Msa0417520:intron 25.0%
!! ATTTTTACTACCATCTTAGT+CGG - chr3_2:64741510-64741529 Msa0417520:intron 25.0%
!! GCATAACTTTCCATAATTTT+TGG + chr3_2:64741541-64741560 None:intergenic 25.0%
! CATAATCATAAATTCATGTC+TGG + chr3_2:64741563-64741582 None:intergenic 25.0%
! TACTACAAGATGACTAAATT+GGG + chr3_2:64741654-64741673 None:intergenic 25.0%
! ATACTACAAGATGACTAAAT+TGG + chr3_2:64741655-64741674 None:intergenic 25.0%
!! AATACATTGATGGTAAGTTT+CGG + chr3_2:64741723-64741742 None:intergenic 25.0%
! AAACTTCTCAAATACATTGA+TGG + chr3_2:64741733-64741752 None:intergenic 25.0%
!!! AACTGTGTTTTGTTTACATA+CGG + chr3_2:64742192-64742211 None:intergenic 25.0%
!! ATAACTCTTCTTTTTCTACT+AGG + chr3_2:64742263-64742282 None:intergenic 25.0%
! GAGTTTAATGATCTTGATAT+AGG - chr3_2:64742297-64742316 Msa0417520:CDS 25.0%
!!! TTTTGATGACAATTTGTAAG+AGG + chr3_2:64742453-64742472 None:intergenic 25.0%
!! ACTTTACCATATTTAACTTC+TGG + chr3_2:64742616-64742635 None:intergenic 25.0%
! AAATATGGTAAAGTATGGAT+TGG - chr3_2:64742622-64742641 Msa0417520:intron 25.0%
! TCATTATATAACATTAAGGC+TGG + chr3_2:64742702-64742721 Msa0417530:CDS 25.0%
! ATGAACTATATTCTCAAATG+GGG + chr3_2:64742793-64742812 Msa0417530:intron 25.0%
CTACTACTATTGCTACTATT+CGG + chr3_2:64736985-64737004 None:intergenic 30.0%
GTTAAGCAGAATATGAGTTT+GGG - chr3_2:64737111-64737130 Msa0417520:three_prime_UTR 30.0%
!! TAATTAACGGGTTAGAATAG+GGG - chr3_2:64737141-64737160 Msa0417520:three_prime_UTR 30.0%
CATCATTCATTCTATAGCAT+TGG + chr3_2:64737414-64737433 None:intergenic 30.0%
TTTGTGTTCCAACTCAAAAA+AGG - chr3_2:64737489-64737508 Msa0417520:intron 30.0%
GACAACACTTATGATAAGAA+AGG + chr3_2:64737605-64737624 None:intergenic 30.0%
ATCATAAGTGTCAATGTTAC+AGG - chr3_2:64737662-64737681 Msa0417520:intron 30.0%
TCATAAGTGTCAATGTTACA+GGG - chr3_2:64737663-64737682 Msa0417520:intron 30.0%
! GTGTAACAGATTTTCTCTTA+TGG + chr3_2:64737866-64737885 None:intergenic 30.0%
! TAGAAAGCTTTTTACAACCA+TGG - chr3_2:64738119-64738138 Msa0417520:intron 30.0%
AAGTTCATATCAATCATCCA+TGG + chr3_2:64738139-64738158 None:intergenic 30.0%
TTGTACACTTAATACTGCAA+TGG - chr3_2:64738396-64738415 Msa0417520:intron 30.0%
!!! GATTGCAGAATTTTTTTCCA+AGG - chr3_2:64738439-64738458 Msa0417520:intron 30.0%
!! TGATTGATAATGGAAACAAC+AGG + chr3_2:64738635-64738654 None:intergenic 30.0%
TTGTTTCCATTATCAATCAC+AGG - chr3_2:64738636-64738655 Msa0417520:CDS 30.0%
GGAACAAAAAAGAAGTTAAG+TGG + chr3_2:64738665-64738684 None:intergenic 30.0%
TCAAAAACCAACACTGAATT+GGG + chr3_2:64738757-64738776 None:intergenic 30.0%
TTCAAAAACCAACACTGAAT+TGG + chr3_2:64738758-64738777 None:intergenic 30.0%
!!! AATTCAGTGTTGGTTTTTGA+AGG - chr3_2:64738757-64738776 Msa0417520:CDS 30.0%
AACGAACTGAATATTGCAAA+TGG + chr3_2:64738869-64738888 None:intergenic 30.0%
TATTCAGTTCGTTTGTTTAC+AGG - chr3_2:64738876-64738895 Msa0417520:intron 30.0%
ATTCAGTTCGTTTGTTTACA+GGG - chr3_2:64738877-64738896 Msa0417520:intron 30.0%
ATGGAAACTCAGCAAAATTT+AGG - chr3_2:64738926-64738945 Msa0417520:intron 30.0%
CAAAATTTAGGCATAGTGTT+AGG - chr3_2:64738938-64738957 Msa0417520:intron 30.0%
! ATTTTCCATTGTGAATTCCA+GGG - chr3_2:64738990-64739009 Msa0417520:intron 30.0%
TTTCAAATTCAAAGAAACCC+TGG + chr3_2:64739010-64739029 None:intergenic 30.0%
! AGTTTTCCACAAATTTGTAG+AGG + chr3_2:64739230-64739249 None:intergenic 30.0%
TAGCATTTGTATGCCAATTT+CGG - chr3_2:64739258-64739277 Msa0417520:intron 30.0%
AGCAAGTATTAAACTTGATG+TGG + chr3_2:64739428-64739447 None:intergenic 30.0%
ATAAGTTATATAGAGACAGC+TGG - chr3_2:64739474-64739493 Msa0417520:intron 30.0%
TGCAAAAATGAAACATGTGA+TGG - chr3_2:64739733-64739752 Msa0417520:intron 30.0%
! GGAACATCATAATCTTTTAC+TGG - chr3_2:64739789-64739808 Msa0417520:CDS 30.0%
GTTCTAGTCAGAAATGTTAA+AGG + chr3_2:64740057-64740076 None:intergenic 30.0%
TTAACATTTCTGACTAGAAC+TGG - chr3_2:64740057-64740076 Msa0417520:CDS 30.0%
ATGCAAAAGGAAAATTGTCA+AGG + chr3_2:64740101-64740120 None:intergenic 30.0%
! TAGTTAAGGATTTGACTTCA+TGG + chr3_2:64740199-64740218 None:intergenic 30.0%
ATATCAAATGCGCAACTTAA+CGG + chr3_2:64740523-64740542 None:intergenic 30.0%
ATGTGTAATGATGAAAACTG+AGG + chr3_2:64740619-64740638 None:intergenic 30.0%
CATACATATATAGAAAAGGG+TGG + chr3_2:64740735-64740754 None:intergenic 30.0%
GTTTCAAATCGTTACATCAA+AGG - chr3_2:64740827-64740846 Msa0417520:intron 30.0%
CATACTTTGATAGATTGGTA+TGG + chr3_2:64741001-64741020 None:intergenic 30.0%
!! AATCATGTAAGGTATTGTTG+TGG - chr3_2:64741165-64741184 Msa0417520:CDS 30.0%
AATCCACAATGAAAAGGTTA+AGG - chr3_2:64741203-64741222 Msa0417520:CDS 30.0%
! TGATGTATTTGAAACGTTCT+GGG + chr3_2:64741255-64741274 None:intergenic 30.0%
! TTTTTACTACCATCTTAGTC+GGG - chr3_2:64741511-64741530 Msa0417520:intron 30.0%
ATACTTGTGGAAAACTTGAA+TGG - chr3_2:64741842-64741861 Msa0417520:intron 30.0%
! CTACTAATAAAGCATCTATG+AGG - chr3_2:64741918-64741937 Msa0417520:CDS 30.0%
ACACACAAATGTAATATGCA+GGG + chr3_2:64741961-64741980 None:intergenic 30.0%
TGATCTTGATATAGGTATCT+TGG - chr3_2:64742305-64742324 Msa0417520:CDS 30.0%
AGCTATTAAATCATTGACCA+AGG - chr3_2:64742340-64742359 Msa0417520:intron 30.0%
GATATACTAAGGATTACTCA+TGG - chr3_2:64742368-64742387 Msa0417520:intron 30.0%
ATCAATAGTTCCTTCACTAA+TGG + chr3_2:64742404-64742423 None:intergenic 30.0%
TCATCAAAAGAAGAGTAGAA+TGG - chr3_2:64742464-64742483 Msa0417520:CDS 30.0%
CTTGCAGCTAAAATGTAAAA+CGG + chr3_2:64742821-64742840 Msa0417530:intron 30.0%
! TTCTCTGCGATTTTCTTCAA+GGG + chr3_2:64737048-64737067 None:intergenic 35.0%
! TTTCTCTGCGATTTTCTTCA+AGG + chr3_2:64737049-64737068 None:intergenic 35.0%
TTGAAGAAAATCGCAGAGAA+AGG - chr3_2:64737048-64737067 Msa0417520:three_prime_UTR 35.0%
TGAAGAAAATCGCAGAGAAA+GGG - chr3_2:64737049-64737068 Msa0417520:three_prime_UTR 35.0%
GAAAATTTATATGTTGGGGG+CGG - chr3_2:64737078-64737097 Msa0417520:three_prime_UTR 35.0%
ACTCATATTCTGCTTAACCT+CGG + chr3_2:64737109-64737128 None:intergenic 35.0%
GGTTAAGCAGAATATGAGTT+TGG - chr3_2:64737110-64737129 Msa0417520:three_prime_UTR 35.0%
! TGAGTTGGAACACAAACATA+GGG + chr3_2:64737485-64737504 None:intergenic 35.0%
!! TTGAGTTGGAACACAAACAT+AGG + chr3_2:64737486-64737505 None:intergenic 35.0%
! TGTCAAGTTGTTTGGTATTG+CGG - chr3_2:64737557-64737576 Msa0417520:intron 35.0%
AAAGGATACAAAACCTGACA+TGG + chr3_2:64737587-64737606 None:intergenic 35.0%
ATGATATTCAGAAATCGGAG+TGG - chr3_2:64737796-64737815 Msa0417520:intron 35.0%
AATCTGTTACACCATCCATA+CGG - chr3_2:64737874-64737893 Msa0417520:intron 35.0%
TGCTCAAACTTTATCTTCGA+AGG - chr3_2:64737901-64737920 Msa0417520:intron 35.0%
AAGGAAATTGCAAGATGACA+AGG - chr3_2:64737920-64737939 Msa0417520:intron 35.0%
TATGGACAACTACAAGTTAG+TGG - chr3_2:64738218-64738237 Msa0417520:intron 35.0%
CACCACATACATGTTGAAAA+CGG + chr3_2:64738290-64738309 None:intergenic 35.0%
! AGATTGGAAGCATAAAACCT+TGG + chr3_2:64738459-64738478 None:intergenic 35.0%
TCTTAACTCACTGTCACAAA+TGG + chr3_2:64738591-64738610 None:intergenic 35.0%
TGGTTACCTGTGATTGATAA+TGG + chr3_2:64738645-64738664 None:intergenic 35.0%
!!! AGTGTTGGTTTTTGAAGGAA+GGG - chr3_2:64738762-64738781 Msa0417520:CDS 35.0%
! GATTTTCCATTGTGAATTCC+AGG - chr3_2:64738989-64739008 Msa0417520:intron 35.0%
AAGATATCTCCACTTTGAAC+TGG - chr3_2:64739128-64739147 Msa0417520:intron 35.0%
AGATATCTCCACTTTGAACT+GGG - chr3_2:64739129-64739148 Msa0417520:intron 35.0%
TTCCACTTATATCCTCAAAG+AGG + chr3_2:64739181-64739200 None:intergenic 35.0%
ATTCTGCCTCTACAAATTTG+TGG - chr3_2:64739221-64739240 Msa0417520:intron 35.0%
TGACAACTATCATCACCTAT+TGG + chr3_2:64739346-64739365 None:intergenic 35.0%
!! AAGTACCACTTTAGAACAGA+GGG + chr3_2:64739559-64739578 None:intergenic 35.0%
!! TAAGTACCACTTTAGAACAG+AGG + chr3_2:64739560-64739579 None:intergenic 35.0%
CGAGAAAATGCAATTCTAGA+AGG - chr3_2:64739703-64739722 Msa0417520:intron 35.0%
!! CTATGAGTTTTGTAGTCTGA+TGG - chr3_2:64739812-64739831 Msa0417520:CDS 35.0%
!! AAAAGAGTGTCAGTAACACT+TGG + chr3_2:64739891-64739910 None:intergenic 35.0%
TTTCCTTTGAACATGGATCA+AGG + chr3_2:64740158-64740177 None:intergenic 35.0%
GCATCAAATTGATCGAGAAA+GGG + chr3_2:64740290-64740309 None:intergenic 35.0%
TGCATCAAATTGATCGAGAA+AGG + chr3_2:64740291-64740310 None:intergenic 35.0%
ATAGTAGATAGAGAACTGCA+AGG + chr3_2:64740346-64740365 None:intergenic 35.0%
TAGGTAAAACATGCATGGAA+AGG + chr3_2:64740418-64740437 None:intergenic 35.0%
TGTACTAGGTAAAACATGCA+TGG + chr3_2:64740423-64740442 None:intergenic 35.0%
AATCTCAAAGGAGTTGTACT+AGG + chr3_2:64740437-64740456 None:intergenic 35.0%
TTGCACTATACGAATCTCAA+AGG + chr3_2:64740449-64740468 None:intergenic 35.0%
CAACTTAACGGCAAAAGATT+TGG + chr3_2:64740511-64740530 None:intergenic 35.0%
GAAAACTGAGGAAATATGAC+CGG + chr3_2:64740607-64740626 None:intergenic 35.0%
GACTGCAAAGGTAAAATATC+AGG + chr3_2:64740928-64740947 None:intergenic 35.0%
AGCTTCATTAATGACTGCAA+AGG + chr3_2:64740940-64740959 None:intergenic 35.0%
TTTGCAGTCATTAATGAAGC+TGG - chr3_2:64740939-64740958 Msa0417520:intron 35.0%
CATTAATGAAGCTGGAGTAT+TGG - chr3_2:64740947-64740966 Msa0417520:intron 35.0%
GATGGCATACTTTGATAGAT+TGG + chr3_2:64741006-64741025 None:intergenic 35.0%
TTGAGTATAGAAGTTTGCGA+TGG + chr3_2:64741024-64741043 None:intergenic 35.0%
AACTTCTATACTCAATCCGT+TGG - chr3_2:64741029-64741048 Msa0417520:CDS 35.0%
!!! TTGCTAGTTTTGCTTTTTCC+TGG - chr3_2:64741105-64741124 Msa0417520:intron 35.0%
!! TTCATTTTTCTAATGCGACC+AGG + chr3_2:64741126-64741145 None:intergenic 35.0%
! CAACCTTAACCTTTTCATTG+TGG + chr3_2:64741209-64741228 None:intergenic 35.0%
AAAGGTTAAGGTTGCAAGTT+AGG - chr3_2:64741215-64741234 Msa0417520:CDS 35.0%
! CTGATGTATTTGAAACGTTC+TGG + chr3_2:64741256-64741275 None:intergenic 35.0%
ATAAACAGATGGAGGAATGA+TGG - chr3_2:64741332-64741351 Msa0417520:intron 35.0%
TAAACAGATGGAGGAATGAT+GGG - chr3_2:64741333-64741352 Msa0417520:intron 35.0%
CACAATGAATAGCTATTCAG+AGG + chr3_2:64741691-64741710 None:intergenic 35.0%
! TGGATGTTTTACTTCATTGC+AGG - chr3_2:64741778-64741797 Msa0417520:intron 35.0%
AATATTGCAAGCCAAGCAAA+GGG + chr3_2:64741822-64741841 None:intergenic 35.0%
TAATATTGCAAGCCAAGCAA+AGG + chr3_2:64741823-64741842 None:intergenic 35.0%
GGCTTGCAATATTATACTTG+TGG - chr3_2:64741829-64741848 Msa0417520:intron 35.0%
CACACAAATGTAATATGCAG+GGG + chr3_2:64741960-64741979 None:intergenic 35.0%
CACACACAAATGTAATATGC+AGG + chr3_2:64741962-64741981 None:intergenic 35.0%
ACATGCATCACATTCAAACA+AGG - chr3_2:64742004-64742023 Msa0417520:intron 35.0%
! CTTTTTCTACTAGGTGACAT+TGG + chr3_2:64742254-64742273 None:intergenic 35.0%
TACAAAGACTCCATTAGTGA+AGG - chr3_2:64742391-64742410 Msa0417520:intron 35.0%
!! GAAGGAACTATTGATGATGT+TGG - chr3_2:64742409-64742428 Msa0417520:intron 35.0%
TCAAAAGAAGAGTAGAATGG+CGG - chr3_2:64742467-64742486 Msa0417520:CDS 35.0%
ATGATTGCACTTGTTTACTC+TGG - chr3_2:64742571-64742590 Msa0417520:five_prime_UTR 35.0%
! ACTCTGGAAATTTGCTTAGA+TGG - chr3_2:64742587-64742606 Msa0417520:five_prime_UTR 35.0%
TGGTCTCCAGAAGTTAAATA+TGG - chr3_2:64742607-64742626 Msa0417520:five_prime_UTR 35.0%
AATTTGAACTTTCCAGTAGC+AGG - chr3_2:64742745-64742764 Msa0417520:five_prime_UTR 35.0%
GTTCTTCAATTCACAACGTC+AGG + chr3_2:64737020-64737039 None:intergenic 40.0%
CGTTGTGAATTGAAGAACAG+AGG - chr3_2:64737022-64737041 Msa0417520:three_prime_UTR 40.0%
CTCATATTCTGCTTAACCTC+GGG + chr3_2:64737108-64737127 None:intergenic 40.0%
TCACTTCGCTCGTTTATCAT+CGG + chr3_2:64737234-64737253 None:intergenic 40.0%
ATAAACGAGCGAAGTGAAGA+CGG - chr3_2:64737237-64737256 Msa0417520:three_prime_UTR 40.0%
AGTTTCCACCATCTCAGAAA+AGG - chr3_2:64737303-64737322 Msa0417520:three_prime_UTR 40.0%
GTTTCCACCATCTCAGAAAA+GGG - chr3_2:64737304-64737323 Msa0417520:three_prime_UTR 40.0%
!! TTACTTTGGTGTTGCATTGC+AGG - chr3_2:64737437-64737456 Msa0417520:CDS 40.0%
!! TACTTTGGTGTTGCATTGCA+GGG - chr3_2:64737438-64737457 Msa0417520:CDS 40.0%
!!! CCATCACACCTTTTTTGAGT+TGG + chr3_2:64737500-64737519 None:intergenic 40.0%
! CCAACTCAAAAAAGGTGTGA+TGG - chr3_2:64737497-64737516 Msa0417520:intron 40.0%
! GTAGCAATGATAGAAGCACA+AGG - chr3_2:64737689-64737708 Msa0417520:intron 40.0%
TTGAATGTCAAGCACTCTCA+AGG - chr3_2:64737832-64737851 Msa0417520:intron 40.0%
AAGTTTGAGCATCAACCGTA+TGG + chr3_2:64737892-64737911 None:intergenic 40.0%
! CTCCGTTTTCAACATGTATG+TGG - chr3_2:64738285-64738304 Msa0417520:intron 40.0%
TGATGTCAGACATGTCTTGA+TGG + chr3_2:64738337-64738356 None:intergenic 40.0%
AGACATGTCTGACATCAAAG+AGG - chr3_2:64738340-64738359 Msa0417520:intron 40.0%
AAACCAACACTGAATTGGGT+AGG + chr3_2:64738753-64738772 None:intergenic 40.0%
!!! CAGTGTTGGTTTTTGAAGGA+AGG - chr3_2:64738761-64738780 Msa0417520:CDS 40.0%
!! TTTTGAAGGAAGGGTAGCAT+CGG - chr3_2:64738771-64738790 Msa0417520:CDS 40.0%
ATAGATACCTCAGTCCCTTT+AGG + chr3_2:64738817-64738836 None:intergenic 40.0%
AGAAACCCTGGAATTCACAA+TGG + chr3_2:64738998-64739017 None:intergenic 40.0%
! GACCTCTTTGAGGATATAAG+TGG - chr3_2:64739176-64739195 Msa0417520:intron 40.0%
! AAGTTGCAACTGCCTAGTTT+TGG + chr3_2:64739284-64739303 None:intergenic 40.0%
GGGTACATCTCATATCCAAT+AGG - chr3_2:64739328-64739347 Msa0417520:intron 40.0%
!! AGTACCACTTTAGAACAGAG+GGG + chr3_2:64739558-64739577 None:intergenic 40.0%
TTTAGGTCATACCAGTTGTG+CGG + chr3_2:64739768-64739787 None:intergenic 40.0%
CACAACTGGTATGACCTAAA+AGG - chr3_2:64739768-64739787 Msa0417520:CDS 40.0%
CGTTTCAATGCCAAGAATGT+GGG - chr3_2:64739939-64739958 Msa0417520:intron 40.0%
CTCTTACTAACCCACATTCT+TGG + chr3_2:64739952-64739971 None:intergenic 40.0%
!! ATGTGGGTTAGTAAGAGACA+AGG - chr3_2:64739955-64739974 Msa0417520:intron 40.0%
ATGGATCAAGGCTCCATTAA+AGG + chr3_2:64740146-64740165 None:intergenic 40.0%
CAATTTGATGCAAACACGAG+AGG - chr3_2:64740299-64740318 Msa0417520:CDS 40.0%
!! ATCGTTACATCAAAGGCACT+TGG - chr3_2:64740834-64740853 Msa0417520:intron 40.0%
GCAACAACTGAAACTACCAA+CGG + chr3_2:64741048-64741067 None:intergenic 40.0%
!! CATGTAAGGTATTGTTGTGG+AGG - chr3_2:64741168-64741187 Msa0417520:CDS 40.0%
GGGAAAGAATAAACAGATGG+AGG - chr3_2:64741324-64741343 Msa0417520:intron 40.0%
CCATCACAACTAGCTAAGAA+AGG + chr3_2:64742076-64742095 None:intergenic 40.0%
CCTTTCTTAGCTAGTTGTGA+TGG - chr3_2:64742073-64742092 Msa0417520:intron 40.0%
! ACTAGGTGACATTGGTTACA+TGG + chr3_2:64742246-64742265 None:intergenic 40.0%
TAAATCATTGACCAAGGCAG+TGG - chr3_2:64742346-64742365 Msa0417520:intron 40.0%
!! GGAACTATTGATGATGTTGG+AGG - chr3_2:64742412-64742431 Msa0417520:intron 40.0%
ATTTGTAAGAGGCTTCTGCA+CGG + chr3_2:64742442-64742461 None:intergenic 40.0%
CAAAAGAAGAGTAGAATGGC+GGG - chr3_2:64742468-64742487 Msa0417520:CDS 40.0%
CCAGTAGCAGGAAAAACAAA+CGG - chr3_2:64742757-64742776 Msa0417520:five_prime_UTR 40.0%
GTTAGAATAGGGGTCCATTC+CGG - chr3_2:64737151-64737170 Msa0417520:three_prime_UTR 45.0%
ACTACTAGAGATTTCCACCC+AGG - chr3_2:64737340-64737359 Msa0417520:CDS 45.0%
!! ACTTTGGTGTTGCATTGCAG+GGG - chr3_2:64737439-64737458 Msa0417520:CDS 45.0%
GAACACAAACATAGGGCTCT+TGG + chr3_2:64737478-64737497 None:intergenic 45.0%
! GACAACGTGAGCATTTGCTA+AGG + chr3_2:64737541-64737560 None:intergenic 45.0%
! GCTCACGTTGTCAAGTTGTT+TGG - chr3_2:64737549-64737568 Msa0417520:intron 45.0%
! GATAGAAGCACAAGGAGTGT+TGG - chr3_2:64737697-64737716 Msa0417520:intron 45.0%
TTGAGCATCAACCGTATGGA+TGG + chr3_2:64737888-64737907 None:intergenic 45.0%
! GATCATTCCAAGCACTGCTA+TGG - chr3_2:64738200-64738219 Msa0417520:intron 45.0%
TAGTTGTCCATAGCAGTGCT+TGG + chr3_2:64738210-64738229 None:intergenic 45.0%
! CAAGTTAGTGGACGCATTAG+TGG - chr3_2:64738230-64738249 Msa0417520:intron 45.0%
TGACAGTGAGTTAAGACCTC+TGG - chr3_2:64738595-64738614 Msa0417520:intron 45.0%
GACAGTGAGTTAAGACCTCT+GGG - chr3_2:64738596-64738615 Msa0417520:intron 45.0%
GAATTGGGTAGGCAGCTATA+TGG + chr3_2:64738742-64738761 None:intergenic 45.0%
CTGTGCAACATGTGCCTAAA+GGG - chr3_2:64738800-64738819 Msa0417520:CDS 45.0%
AAAGAGGTCCCAGTTCAAAG+TGG + chr3_2:64739140-64739159 None:intergenic 45.0%
ACTTTGAACTGGGACCTCTT+TGG - chr3_2:64739139-64739158 Msa0417520:intron 45.0%
CTTTGAACTGGGACCTCTTT+GGG - chr3_2:64739140-64739159 Msa0417520:intron 45.0%
TTTGAACTGGGACCTCTTTG+GGG - chr3_2:64739141-64739160 Msa0417520:intron 45.0%
ATTATAGCCGTTCCCCAAAG+AGG + chr3_2:64739156-64739175 None:intergenic 45.0%
CGGCTATAATGACCTCTTTG+AGG - chr3_2:64739166-64739185 Msa0417520:intron 45.0%
AGTGGAAGTCGAACTACTAG+AGG - chr3_2:64739194-64739213 Msa0417520:intron 45.0%
TGCCAATTTCGGCCAAAACT+AGG - chr3_2:64739269-64739288 Msa0417520:intron 45.0%
!!! TGCCTAGTTTTGGCCGAAAT+TGG + chr3_2:64739274-64739293 None:intergenic 45.0%
! AAGCACTGTGACTCGACAAA+AGG - chr3_2:64739497-64739516 Msa0417520:CDS 45.0%
GGGGACAAACACAAGTGAAT+AGG + chr3_2:64739539-64739558 None:intergenic 45.0%
!! TTGTCCCCTCTGTTCTAAAG+TGG - chr3_2:64739551-64739570 Msa0417520:CDS 45.0%
! AGAGTGTCAGTAACACTTGG+TGG + chr3_2:64739888-64739907 None:intergenic 45.0%
GCGTTTCAATGCCAAGAATG+TGG - chr3_2:64739938-64739957 Msa0417520:intron 45.0%
GCTTCTAAGCCTTCTTCTAG+TGG - chr3_2:64740025-64740044 Msa0417520:intron 45.0%
AGGATACTGCCACTAGAAGA+AGG + chr3_2:64740037-64740056 None:intergenic 45.0%
GAGCCTTGATCCATGTTCAA+AGG - chr3_2:64740152-64740171 Msa0417520:intron 45.0%
! AACACGAGAGGCGATTTTGA+AGG - chr3_2:64740311-64740330 Msa0417520:CDS 45.0%
ACTTTGGATGATCCTGCAAC+CGG - chr3_2:64740585-64740604 Msa0417520:intron 45.0%
TATCCCCAGTACAGTGAGTT+TGG - chr3_2:64740702-64740721 Msa0417520:intron 45.0%
ATGCCAAACTCACTGTACTG+GGG + chr3_2:64740708-64740727 None:intergenic 45.0%
GATGCCAAACTCACTGTACT+GGG + chr3_2:64740709-64740728 None:intergenic 45.0%
AGATGCCAAACTCACTGTAC+TGG + chr3_2:64740710-64740729 None:intergenic 45.0%
GGGGGGAAAGAATAAACAGA+TGG - chr3_2:64741321-64741340 Msa0417520:intron 45.0%
AATGCGTGACAAAGGTAGGA+AGG + chr3_2:64741383-64741402 None:intergenic 45.0%
GAGAAATGCGTGACAAAGGT+AGG + chr3_2:64741387-64741406 None:intergenic 45.0%
TGCAGAGAAATGCGTGACAA+AGG + chr3_2:64741391-64741410 None:intergenic 45.0%
GTCGGGTCACCCAAAAATTA+TGG - chr3_2:64741528-64741547 Msa0417520:intron 45.0%
ATGATGCTGACATGCAATGC+TGG - chr3_2:64741758-64741777 Msa0417520:intron 45.0%
TAGGTATCTTGGAGACACAG+AGG - chr3_2:64742316-64742335 Msa0417520:CDS 45.0%
CCTTAGTATATCCACTGCCT+TGG + chr3_2:64742360-64742379 None:intergenic 45.0%
CCAAGGCAGTGGATATACTA+AGG - chr3_2:64742357-64742376 Msa0417520:intron 45.0%
TTTGTAAGAGGCTTCTGCAC+GGG + chr3_2:64742441-64742460 None:intergenic 45.0%
ACCAGAAGCAGCTGTGATAT+CGG + chr3_2:64742503-64742522 None:intergenic 45.0%
TTCTGGTACAAACAAGCCAC+TGG - chr3_2:64742516-64742535 Msa0417520:CDS 45.0%
! CATTAAGGCTGGCTGATGAA+GGG + chr3_2:64742691-64742710 Msa0417530:CDS 45.0%
! ACATTAAGGCTGGCTGATGA+AGG + chr3_2:64742692-64742711 Msa0417530:CDS 45.0%
!! CCGTTTGTTTTTCCTGCTAC+TGG + chr3_2:64742760-64742779 Msa0417530:CDS 45.0%
!!! CTATTTTATATAATTTTTTA+AGG - chr3_2:64739446-64739465 Msa0417520:intron 5.0%
GAGCGAAGTGAAGACGGAAA+TGG - chr3_2:64737243-64737262 Msa0417520:three_prime_UTR 50.0%
CGAAGTGAAGACGGAAATGG+AGG - chr3_2:64737246-64737265 Msa0417520:three_prime_UTR 50.0%
!! AGAGCGACCCTTTTCTGAGA+TGG + chr3_2:64737314-64737333 None:intergenic 50.0%
AGAGAGAGAGAGAGAGACCT+GGG + chr3_2:64737360-64737379 None:intergenic 50.0%
GTATTGCGGAACACCATGTC+AGG - chr3_2:64737571-64737590 Msa0417520:intron 50.0%
GTCTTGTGTCCGACACATGT+TGG + chr3_2:64737633-64737652 None:intergenic 50.0%
TGACATCAAAGAGGAGCAGC+TGG - chr3_2:64738349-64738368 Msa0417520:intron 50.0%
!! GCTGGTGTTGTATGCACAGA+TGG - chr3_2:64738367-64738386 Msa0417520:intron 50.0%
GCGCATTACATGCAAACTGC+AGG + chr3_2:64738565-64738584 None:intergenic 50.0%
! GAGTTAAGACCTCTGGGAAC+AGG - chr3_2:64738602-64738621 Msa0417520:intron 50.0%
GGATACAATCCTGTTCCCAG+AGG + chr3_2:64738614-64738633 None:intergenic 50.0%
CTGCCTACCCAATTCAGTGT+TGG - chr3_2:64738747-64738766 Msa0417520:CDS 50.0%
GCTGTGCAACATGTGCCTAA+AGG - chr3_2:64738799-64738818 Msa0417520:CDS 50.0%
ACATGTGCCTAAAGGGACTG+AGG - chr3_2:64738807-64738826 Msa0417520:CDS 50.0%
GAGGAAATATGACCGGTTGC+AGG + chr3_2:64740600-64740619 None:intergenic 50.0%
TTTGGGTGACCCGACTAAGA+TGG + chr3_2:64741523-64741542 None:intergenic 50.0%
ACCGATATCACAGCTGCTTC+TGG - chr3_2:64742499-64742518 Msa0417520:CDS 50.0%
TACAAACAAGCCACTGGAGC+TGG - chr3_2:64742522-64742541 Msa0417520:CDS 50.0%
ATTCTGTGATCCAGCTCCAG+TGG + chr3_2:64742535-64742554 None:intergenic 50.0%
TTGATCCGACCCGGTAGTTC+CGG + chr3_2:64737173-64737192 None:intergenic 55.0%
TACTCGGACTTGATCCGACC+CGG + chr3_2:64737182-64737201 None:intergenic 55.0%
!!! GCGACCCTTTTCTGAGATGG+TGG + chr3_2:64737311-64737330 None:intergenic 55.0%
GAGAGAGAGAGAGAGAGACC+TGG + chr3_2:64737361-64737380 None:intergenic 55.0%
TGTCGGCGTCCAACATGTGT+CGG - chr3_2:64737621-64737640 Msa0417520:intron 55.0%
! ACTGGGACCTCTTTGGGGAA+CGG - chr3_2:64739146-64739165 Msa0417520:intron 55.0%
GGTTTCTTGCTCCGCACAAC+TGG - chr3_2:64739754-64739773 Msa0417520:intron 55.0%
CCAAGCAAAGGGTGAACAGC+TGG + chr3_2:64741811-64741830 None:intergenic 55.0%
CCAGCTGTTCACCCTTTGCT+TGG - chr3_2:64741808-64741827 Msa0417520:intron 55.0%
GGGGTCCATTCCGGAACTAC+CGG - chr3_2:64737160-64737179 Msa0417520:three_prime_UTR 60.0%
GGGTCCATTCCGGAACTACC+GGG - chr3_2:64737161-64737180 Msa0417520:three_prime_UTR 60.0%
CCATTCCGGAACTACCGGGT+CGG - chr3_2:64737165-64737184 Msa0417520:three_prime_UTR 60.0%
GAGAGAGAGAGAGACCTGGG+TGG + chr3_2:64737357-64737376 None:intergenic 60.0%
CCGACCCGGTAGTTCCGGAA+TGG + chr3_2:64737168-64737187 None:intergenic 65.0%
TGTTGGGGGCGGATGACCCG+AGG - chr3_2:64737089-64737108 Msa0417520:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 64736891 64742920 64736891 ID=Msa0417520;Name=Msa0417520
chr3_2 mRNA 64736891 64742920 64736891 ID=Msa0417520-mRNA-1;Parent=Msa0417520;Name=Msa0417520-mRNA-1;_AED=0.11;_eAED=0.11;_QI=349|0.78|0.8|1|0.64|0.6|15|439|529
chr3_2 exon 64736891 64737492 64736891 ID=Msa0417520-mRNA-1:exon:14431;Parent=Msa0417520-mRNA-1
chr3_2 exon 64737948 64738011 64737948 ID=Msa0417520-mRNA-1:exon:14430;Parent=Msa0417520-mRNA-1
chr3_2 exon 64738622 64738865 64738622 ID=Msa0417520-mRNA-1:exon:14429;Parent=Msa0417520-mRNA-1
chr3_2 exon 64739479 64739585 64739479 ID=Msa0417520-mRNA-1:exon:14428;Parent=Msa0417520-mRNA-1
chr3_2 exon 64739762 64739881 64739762 ID=Msa0417520-mRNA-1:exon:14427;Parent=Msa0417520-mRNA-1
chr3_2 exon 64740036 64740138 64740036 ID=Msa0417520-mRNA-1:exon:14426;Parent=Msa0417520-mRNA-1
chr3_2 exon 64740239 64740343 64740239 ID=Msa0417520-mRNA-1:exon:14425;Parent=Msa0417520-mRNA-1
chr3_2 exon 64740983 64741064 64740983 ID=Msa0417520-mRNA-1:exon:14424;Parent=Msa0417520-mRNA-1
chr3_2 exon 64741154 64741242 64741154 ID=Msa0417520-mRNA-1:exon:14423;Parent=Msa0417520-mRNA-1
chr3_2 exon 64741351 64741469 64741351 ID=Msa0417520-mRNA-1:exon:14422;Parent=Msa0417520-mRNA-1
chr3_2 exon 64741556 64741610 64741556 ID=Msa0417520-mRNA-1:exon:14421;Parent=Msa0417520-mRNA-1
chr3_2 exon 64741870 64742004 64741870 ID=Msa0417520-mRNA-1:exon:14420;Parent=Msa0417520-mRNA-1
chr3_2 exon 64742249 64742352 64742249 ID=Msa0417520-mRNA-1:exon:14419;Parent=Msa0417520-mRNA-1
chr3_2 exon 64742450 64742634 64742450 ID=Msa0417520-mRNA-1:exon:14418;Parent=Msa0417520-mRNA-1
chr3_2 exon 64742657 64742920 64742657 ID=Msa0417520-mRNA-1:exon:14417;Parent=Msa0417520-mRNA-1
chr3_2 five_prime_UTR 64742657 64742920 64742657 ID=Msa0417520-mRNA-1:five_prime_utr;Parent=Msa0417520-mRNA-1
chr3_2 five_prime_UTR 64742550 64742634 64742550 ID=Msa0417520-mRNA-1:five_prime_utr;Parent=Msa0417520-mRNA-1
chr3_2 CDS 64742450 64742549 64742450 ID=Msa0417520-mRNA-1:cds;Parent=Msa0417520-mRNA-1
chr3_2 CDS 64742249 64742352 64742249 ID=Msa0417520-mRNA-1:cds;Parent=Msa0417520-mRNA-1
chr3_2 CDS 64741870 64742004 64741870 ID=Msa0417520-mRNA-1:cds;Parent=Msa0417520-mRNA-1
chr3_2 CDS 64741556 64741610 64741556 ID=Msa0417520-mRNA-1:cds;Parent=Msa0417520-mRNA-1
chr3_2 CDS 64741351 64741469 64741351 ID=Msa0417520-mRNA-1:cds;Parent=Msa0417520-mRNA-1
chr3_2 CDS 64741154 64741242 64741154 ID=Msa0417520-mRNA-1:cds;Parent=Msa0417520-mRNA-1
chr3_2 CDS 64740983 64741064 64740983 ID=Msa0417520-mRNA-1:cds;Parent=Msa0417520-mRNA-1
chr3_2 CDS 64740239 64740343 64740239 ID=Msa0417520-mRNA-1:cds;Parent=Msa0417520-mRNA-1
chr3_2 CDS 64740036 64740138 64740036 ID=Msa0417520-mRNA-1:cds;Parent=Msa0417520-mRNA-1
chr3_2 CDS 64739762 64739881 64739762 ID=Msa0417520-mRNA-1:cds;Parent=Msa0417520-mRNA-1
chr3_2 CDS 64739479 64739585 64739479 ID=Msa0417520-mRNA-1:cds;Parent=Msa0417520-mRNA-1
chr3_2 CDS 64738622 64738865 64738622 ID=Msa0417520-mRNA-1:cds;Parent=Msa0417520-mRNA-1
chr3_2 CDS 64737948 64738011 64737948 ID=Msa0417520-mRNA-1:cds;Parent=Msa0417520-mRNA-1
chr3_2 CDS 64737330 64737492 64737330 ID=Msa0417520-mRNA-1:cds;Parent=Msa0417520-mRNA-1
chr3_2 three_prime_UTR 64736891 64737329 64736891 ID=Msa0417520-mRNA-1:three_prime_utr;Parent=Msa0417520-mRNA-1
Gene Sequence

>Msa0417520

ATGGAGGAATTGCAACAAGCACTGAAGAATTGTAATTTAACAGTTTCCACCATCTCAGAAAAGGGTCGCTCTCTTTTTACTACTAGAGATTTCCACCCAGGGGAAGTGATTATTAGCCAAGAGCCCTATGTTTGTGTTCCAACTCAAAAAAGGTGTGATGGATGTTTCTCAACAACTAACCTTAGCAAATGCTCACGTTGTCAAAAATCGGAGTGGAAGTTGCATCGTCTTGAATGTCAAGCACTCTCAAGGCTAGACAACCATAAGAGAAAATCTGTTACACCATCCATACGGTTGATGCTCAAACTTTATCTTCGAAGGAAATTGCAAGATGACAAGATCATTCCAAGCACTGCTATGGACAACTACAAGTTAGTGGACGCATTAGTGGCTCACATGTCTGACATCAAAGAGGAGCAGCTGGTGTTGTATGCACAGATGGCTAATCTTGTACACTTAATACTGCAATGGCCTGAAATCAATATTAAAGAGATTGCAGAATTTTTTTCCAAGTTTGCATGTAATGCGCATACCATTTGTGACAGTGAGTTAAGACCTCTGGGAACAGGATTGTATCCTGTTGTTTCCATTATCAATCACAGCTGCCTACCCAATTCAGTGTTGGTTTTTGAAGGAAGGGTAGCATCGGTACGTGCTGTGCAACATGTGCCTAAAGGGACTGAGGTATTGATAAGTTATATAGAGACAGCTGGAAGCACTGTGACTCGACAAAAGGCTCTCAGAGAGCAGTACCTATTCACTTGTGTTTGTCCCCTCTGTTCTAAAGTGTTAGTTTTGAAGGGTCAGTATGAAGATGTTCGAGAAAATGCAATTCTAGAAGGATACAGATGCAAAAATGAAACATGTGATGGTTTCTTGCTCCGCACAACTGATGGAAAAGCGTTTCAATGCCAAGAATGTGGGTTAGTAAGAGACAAGGAAGAGATAAAGCAAATTGCAACTGAAATAAAATTTCTATCAGAAGAAGCTTCTAAGCCTTCTTCTAGTGGCAATTATCATGAAGCTATTTCCATATATAAAATGATCGAGAAACTGCAAACAAAACTATATCACCCTTTCTCGATCAATTTGATGCAAACACGAGAGGCGATTTTGAAGTCATTAATGAAGCTGGAGTATTGGAGAGAAGCTTTAGCATATTGCAAATTGACCATACCAATCTATCAAAGTATGCCATCGCAAACTTCTATACTCAATCCGTTGGTAGTTTCAGTTGTTGCTTTCATTTCGAAGTTTTCTATCTTGCTTTTCAAATATTTGCTAGTTTTGCTTTTTCCTGGTCGCATTAGAAAAATGAAAATTACTAATTTTAGCAAAAATCATGTAAGGTATTGTTGTGGAGGAGTGTATCCAGCTGTTCACCCTTTGCTTGGCTTGCAATATTATACTTGTGGAAAACTTGAATGGTATCTTGGAGACACAGAGGAAGCTATTAAATCATTGACCAAGGCAGTGGATATACTAAGGATTACTCATGGTACAAAGACTCCATTAGTGAAGGAACTATTGATGATGTTGGAGGAAGCCCGTGCAGAAGCCTCTTACAAATTGTCATCAAAAGAAGAGTAG

Protein sequence

>Msa0417520

MEELQQALKNCNLTVSTISEKGRSLFTTRDFHPGEVIISQEPYVCVPTQKRCDGCFSTTNLSKCSRCQKSEWKLHRLECQALSRLDNHKRKSVTPSIRLMLKLYLRRKLQDDKIIPSTAMDNYKLVDALVAHMSDIKEEQLVLYAQMANLVHLILQWPEINIKEIAEFFSKFACNAHTICDSELRPLGTGLYPVVSIINHSCLPNSVLVFEGRVASVRAVQHVPKGTEVLISYIETAGSTVTRQKALREQYLFTCVCPLCSKVLVLKGQYEDVRENAILEGYRCKNETCDGFLLRTTDGKAFQCQECGLVRDKEEIKQIATEIKFLSEEASKPSSSGNYHEAISIYKMIEKLQTKLYHPFSINLMQTREAILKSLMKLEYWREALAYCKLTIPIYQSMPSQTSILNPLVVSVVAFISKFSILLFKYLLVLLFPGRIRKMKITNFSKNHVRYCCGGVYPAVHPLLGLQYYTCGKLEWYLGDTEEAIKSLTKAVDILRITHGTKTPLVKELLMMLEEARAEASYKLSSKEE*