AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0370100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0370100 MtrunA17_Chr3g0115061 92.616 474 21 2 1 464 1 470 0.0 899
Msa0370100 MtrunA17_Chr8g0375381 24.422 303 156 12 13 261 8 291 2.35e-12 68.6
Msa0370100 MtrunA17_Chr3g0128421 27.500 160 95 4 172 329 459 599 3.86e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0370100 AT2G17900.1 62.004 479 164 3 1 465 6 480 0.0 619

Find 122 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGGCAATTTGAACTTTCT+AGG 0.222350 3_1:-67571071 Msa0370100:three_prime_UTR
ATCTCTTTAATATTGATTTC+AGG 0.234425 3_1:+67575431 None:intergenic
TCCTAAGCAGAATATGAGTT+TGG 0.277555 3_1:-67576747 Msa0370100:intron
CTCTTACTAACCCACATTCT+TGG 0.284514 3_1:+67573898 None:intergenic
ACTGATATTGCAGCTGCTTC+TGG 0.358450 3_1:-67571336 Msa0370100:three_prime_UTR
ATACTGAAAATTTATATGTT+GGG 0.361187 3_1:-67576984 Msa0370100:five_prime_UTR
GAGCGAAGTGAAGACGAAAA+TGG 0.364567 3_1:-67576609 Msa0370100:exon
CAAATCATTATATAACATTA+AGG 0.366155 3_1:+67571108 None:intergenic
TTTAGATGAAAATTTGTAAG+AGG 0.372075 3_1:+67571385 None:intergenic
ATTACTGCTCTTGTTTACTT+TGG 0.381660 3_1:-67571260 Msa0370100:three_prime_UTR
TTGGGTATCATTTAATTAAC+GGG 0.383398 3_1:-67576728 Msa0370100:five_prime_UTR
AATACTGAAAATTTATATGT+TGG 0.391610 3_1:-67576985 Msa0370100:five_prime_UTR
GGTTTCTTGCTCCGCACAAC+TGG 0.393388 3_1:-67574097 Msa0370100:intron
AAAGAAGGCATAAAGCAAAC+AGG 0.393664 3_1:+67571167 None:intergenic
ATCAATAGTTCTTTCACAAA+TGG 0.393961 3_1:+67571434 None:intergenic
GTCCGAGTAATATAAAATAA+AGG 0.394652 3_1:-67576664 Msa0370100:five_prime_UTR
CCAGCTGTTCACCCTTTGCT+TGG 0.395564 3_1:-67571958 Msa0370100:CDS
CCTAAGCAGAATATGAGTTT+GGG 0.395804 3_1:-67576746 Msa0370100:intron
CGAGAAAATGCAATTCTAGA+AGG 0.401251 3_1:-67574148 Msa0370100:CDS
CTACTACTATTGCTACTATT+CGG 0.402372 3_1:+67577073 None:intergenic
GATCACATACTTTGATAGAT+TGG 0.403072 3_1:+67572807 None:intergenic
AATTTGAACTTTCTAGGATC+AGG 0.403564 3_1:-67571065 Msa0370100:three_prime_UTR
TGGTTACCTGTGATTGATAA+TGG 0.407535 3_1:+67575208 None:intergenic
TGGTCTTGATATAGGTATCT+TGG 0.410530 3_1:-67571530 Msa0370100:intron
TTTGGGTATCATTTAATTAA+CGG 0.412649 3_1:-67576729 Msa0370100:five_prime_UTR
AAGTTGAAAGTGGTAAAGTA+TGG 0.415338 3_1:-67571218 Msa0370100:three_prime_UTR
GGCATAAAGCAAACAGGGTC+TGG 0.415746 3_1:+67571173 None:intergenic
TGACAGTGAGTTAAGACCTC+TGG 0.417510 3_1:-67575255 Msa0370100:CDS
AAAAGAACTATTCTTAAATA+GGG 0.418266 3_1:+67571020 None:intergenic
ATACTTGTGGAAAACTTGAA+TGG 0.426325 3_1:-67571924 Msa0370100:intron
CAAGTTAGTGGACGCATTAG+TGG 0.432256 3_1:-67575620 Msa0370100:CDS
AGAAAATCGCAGAGAGAGAA+AGG 0.439650 3_1:-67577009 Msa0370100:five_prime_UTR
AAGAGTAGAATGACGAGTTA+AGG 0.444930 3_1:-67571361 Msa0370100:exon
TGCATCAAATTGATCGAGAA+AGG 0.445219 3_1:+67573560 None:intergenic
GAGTTAAGACCTCTGGGAAC+AGG 0.450124 3_1:-67575248 Msa0370100:CDS
CCAAGCAAAGGGTGAACAGC+TGG 0.455085 3_1:+67571958 None:intergenic
TTTGCAGTCATTAATGAAGC+TGG 0.455096 3_1:-67572871 Msa0370100:intron
GTTCTTCAATTCACAACGTC+AGG 0.457095 3_1:+67577041 None:intergenic
TTTAAACAATCTTAATGAAA+GGG 0.460098 3_1:-67570970 Msa0370100:three_prime_UTR
GGGGACAAACACAAGTGAAT+AGG 0.464095 3_1:+67574315 None:intergenic
TGCTCAAACTTTATCTTCGA+AGG 0.464527 3_1:-67575955 Msa0370100:CDS
CTGTGCAACATGTGCCTAAA+GGG 0.466513 3_1:-67575050 Msa0370100:CDS
TACTGAAAATTTATATGTTG+GGG 0.468405 3_1:-67576983 Msa0370100:five_prime_UTR
AGTTTCCACCATCTCAGAAA+AGG 0.468581 3_1:-67576549 Msa0370100:CDS
AGGTCAAGGCTGGCTGATGA+AGG 0.472178 3_1:+67571128 None:intergenic
ATAAAATAAAGGAAAGAAAG+TGG 0.478584 3_1:-67576653 Msa0370100:five_prime_UTR
ATAGATACCTCAGTCCCTTT+AGG 0.485587 3_1:+67575036 None:intergenic
TTGAGTTGGAACACAAACAT+AGG 0.489336 3_1:+67576369 None:intergenic
TGCAAACAAGTCACTGGAGG+TGG 0.489947 3_1:-67571313 Msa0370100:three_prime_UTR
TTGTTTCCATTATCAATCAC+AGG 0.492390 3_1:-67575214 Msa0370100:intron
GGCTTGCAATATTATACTTG+TGG 0.493062 3_1:-67571937 Msa0370100:CDS
GAACACAAACATAGGGCTCT+TGG 0.499515 3_1:+67576377 None:intergenic
GAAAGTGGTAAAGTATGGAT+TGG 0.510631 3_1:-67571213 Msa0370100:three_prime_UTR
GATCATTCCAAGCACTGCTA+TGG 0.511797 3_1:-67575650 Msa0370100:CDS
TTTGTAAGAGGCTTCTGCAC+GGG 0.512557 3_1:+67571397 None:intergenic
ATTTAAACAATCTTAATGAA+AGG 0.512959 3_1:-67570971 Msa0370100:three_prime_UTR
TCTTAACTCACTGTCACAAA+TGG 0.513188 3_1:+67575262 None:intergenic
CGAAGGCTGTGGATATACTA+AGG 0.514825 3_1:-67571478 Msa0370100:CDS
GCGTTTCAATGCCAAGAATG+TGG 0.517194 3_1:-67573909 Msa0370100:CDS
GAAAGAACTATTGATGATGT+TGG 0.517958 3_1:-67571426 Msa0370100:CDS
TTCGCTCGTTTATCATCGCT+CGG 0.518053 3_1:+67576625 None:intergenic
AGGTTCTTCTGCTTAACCTC+GGG 0.521002 3_1:+67576952 None:intergenic
AAGCACTGTGACTCGACAAA+AGG 0.521126 3_1:-67574354 Msa0370100:CDS
TAAATCATTGACGAAGGCTG+TGG 0.522511 3_1:-67571489 Msa0370100:CDS
TTGTCCCCTCTGTTCTAAAG+TGG 0.523368 3_1:-67574300 Msa0370100:intron
ATAAGTTATATAGAGACAGC+TGG 0.532422 3_1:-67574377 Msa0370100:CDS
AAGTACCACTTTAGAACAGA+GGG 0.532968 3_1:+67574295 None:intergenic
GTTTCCACCATCTCAGAAAA+GGG 0.534104 3_1:-67576548 Msa0370100:CDS
GAAAATCGCAGAGAGAGAAA+GGG 0.536374 3_1:-67577008 Msa0370100:five_prime_UTR
TGAGTTGGAACACAAACATA+GGG 0.536392 3_1:+67576370 None:intergenic
TGACATCAAAGAGGAGCAGC+TGG 0.537970 3_1:-67575501 Msa0370100:CDS
CTGCCTACCCAATTCAGTGT+TGG 0.538934 3_1:-67575103 Msa0370100:CDS
CATTAATGAAGCTGGAATGT+TGG 0.540158 3_1:-67572863 Msa0370100:CDS
AAGGTTCTTCTGCTTAACCT+CGG 0.540496 3_1:+67576951 None:intergenic
TATAACATTAAGGTCAAGGC+TGG 0.543109 3_1:+67571118 None:intergenic
TAATATTGCAAGCCAAGCAA+AGG 0.544619 3_1:+67571946 None:intergenic
GCTTCTAAGCCTTCTTCTAG+TGG 0.547425 3_1:-67573822 Msa0370100:CDS
ATTATATAACATTAAGGTCA+AGG 0.547513 3_1:+67571114 None:intergenic
CATATTACAGTACATAAAGA+AGG 0.548424 3_1:+67571152 None:intergenic
CGTTTCAATGCCAAGAATGT+GGG 0.549729 3_1:-67573908 Msa0370100:CDS
AAGTTTGAGCATCAACCGTA+TGG 0.550663 3_1:+67575967 None:intergenic
TAGTTGTCCATAGCAGTGCT+TGG 0.554117 3_1:+67575643 None:intergenic
TATGGACAACTACAAGTTAG+TGG 0.554822 3_1:-67575632 Msa0370100:CDS
TTCTGGTGCAAACAAGTCAC+TGG 0.562623 3_1:-67571319 Msa0370100:three_prime_UTR
AGGATACTGCCACTAGAAGA+AGG 0.563978 3_1:+67573813 None:intergenic
GACAGTGAGTTAAGACCTCT+GGG 0.564404 3_1:-67575254 Msa0370100:CDS
TGATTGATAATGGAAACAAC+AGG 0.566394 3_1:+67575218 None:intergenic
TAGTCTCAAGAAGTTGAAAG+TGG 0.572508 3_1:-67571228 Msa0370100:three_prime_UTR
TTGAGCATCAACCGTATGGA+TGG 0.572598 3_1:+67575971 None:intergenic
CATACTTTGATAGATTGGTA+TGG 0.573681 3_1:+67572812 None:intergenic
TTGTACACTTAATACTGCAA+TGG 0.575595 3_1:-67575454 Msa0370100:CDS
TTGAATGTCAAGCACTCTCA+AGG 0.577097 3_1:-67576024 Msa0370100:CDS
AATATTGCAAGCCAAGCAAA+GGG 0.578542 3_1:+67571947 None:intergenic
ACTACTAGAGATTTCCACCC+AGG 0.595061 3_1:-67576512 Msa0370100:intron
GCTGTGCAACATGTGCCTAA+AGG 0.597001 3_1:-67575051 Msa0370100:CDS
GCTGGTGTTGTATGCACAGA+TGG 0.598430 3_1:-67575483 Msa0370100:CDS
GGTCAAGGCTGGCTGATGAA+GGG 0.605830 3_1:+67571129 None:intergenic
GACAACGTGAGCATTTGCTA+AGG 0.614070 3_1:+67576314 None:intergenic
AAGGAAATTGCAAGATGACA+AGG 0.615659 3_1:-67575936 Msa0370100:intron
ACTGAAAATTTATATGTTGG+GGG 0.624966 3_1:-67576982 Msa0370100:five_prime_UTR
AGAACTATTGATGATGTTGG+AGG 0.625688 3_1:-67571423 Msa0370100:CDS
ATGTGGGTTAGTAAGAGACA+AGG 0.627932 3_1:-67573892 Msa0370100:CDS
TTTAGGTTATACCAGTTGTG+CGG 0.631225 3_1:+67574086 None:intergenic
TACTCGGACTTGATCCGACC+CGG 0.635599 3_1:+67576678 None:intergenic
AATCTGTTACACCATCCATA+CGG 0.635943 3_1:-67575982 Msa0370100:CDS
GATATACTAAGGATTACTCA+TGG 0.637057 3_1:-67571467 Msa0370100:CDS
ATTTGTAAGAGGCTTCTGCA+CGG 0.637726 3_1:+67571396 None:intergenic
AAACCAACACTGAATTGGGT+AGG 0.637837 3_1:+67575100 None:intergenic
CCATTCCGGAACTACCGGGT+CGG 0.643340 3_1:-67576692 Msa0370100:intron
AAGAAGGCATAAAGCAAACA+GGG 0.646631 3_1:+67571168 None:intergenic
AGACATGTCTGACATCAAAG+AGG 0.653286 3_1:-67575510 Msa0370100:CDS
ATATAGGTATCTTGGAGACA+CGG 0.663794 3_1:-67571522 Msa0370100:intron
AGCTGTTAAATCATTGACGA+AGG 0.667636 3_1:-67571495 Msa0370100:CDS
GAGAGAGAGTGTGACCTGGG+TGG 0.670700 3_1:+67576498 None:intergenic
CGAAGTGAAGACGAAAATGG+AGG 0.671798 3_1:-67576606 Msa0370100:exon
TGGTGCAAACAAGTCACTGG+AGG 0.673375 3_1:-67571316 Msa0370100:three_prime_UTR
ACATGTGCCTAAAGGGACTG+AGG 0.674349 3_1:-67575043 Msa0370100:intron
ATGATATTCAGAAATCGGAG+TGG 0.685347 3_1:-67576060 Msa0370100:intron
TAAGTACCACTTTAGAACAG+AGG 0.686937 3_1:+67574294 None:intergenic
GGATACAATCCTGTTCCCAG+AGG 0.760315 3_1:+67575239 None:intergenic
TAGGTATCTTGGAGACACGG+AGG 0.765205 3_1:-67571519 Msa0370100:CDS
AGTACCACTTTAGAACAGAG+GGG 0.783095 3_1:+67574296 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTTTTTTTTTTTTTACTT+TGG - chr3_1:67571560-67571579 Msa0370100:intron 10.0%
!!! TTTTGTTTTTAAATTATAGA+TGG - chr3_1:67574053-67574072 Msa0370100:intron 10.0%
!! AATACTGAAAATTTATATGT+TGG - chr3_1:67571004-67571023 Msa0370100:three_prime_UTR 15.0%
!! ATACTGAAAATTTATATGTT+GGG - chr3_1:67571005-67571024 Msa0370100:three_prime_UTR 15.0%
!!! TTCCTTTATTTTATATTACT+CGG + chr3_1:67571330-67571349 None:intergenic 15.0%
!!! TATATCAACTAATTTAAGAT+TGG + chr3_1:67572614-67572633 None:intergenic 15.0%
!!! TGTCATTTAAAGATTATTAA+TGG - chr3_1:67573046-67573065 Msa0370100:intron 15.0%
!!! TCAGTCTTATATTTATAAAA+AGG + chr3_1:67573984-67574003 None:intergenic 15.0%
!! AAATCAATTATTGCATAAAT+GGG + chr3_1:67575057-67575076 None:intergenic 15.0%
!! AAAATCAATTATTGCATAAA+TGG + chr3_1:67575058-67575077 None:intergenic 15.0%
!!! TTTTGATTGATTAAACATAA+AGG + chr3_1:67575687-67575706 None:intergenic 15.0%
!! CAAATCATTATATAACATTA+AGG + chr3_1:67576884-67576903 None:intergenic 15.0%
!!! TTTGTTACTGTTTTTTTTAA+TGG - chr3_1:67576900-67576919 Msa0370100:intron 15.0%
!! AAAAGAACTATTCTTAAATA+GGG + chr3_1:67576972-67576991 None:intergenic 15.0%
!! AAAAAGAACTATTCTTAAAT+AGG + chr3_1:67576973-67576992 None:intergenic 15.0%
!! ATTTAAACAATCTTAATGAA+AGG - chr3_1:67577018-67577037 Msa0370100:five_prime_UTR 15.0%
!! TTTAAACAATCTTAATGAAA+GGG - chr3_1:67577019-67577038 Msa0370100:five_prime_UTR 15.0%
!! TACTGAAAATTTATATGTTG+GGG - chr3_1:67571006-67571025 Msa0370100:three_prime_UTR 20.0%
!! TTTGGGTATCATTTAATTAA+CGG - chr3_1:67571260-67571279 Msa0370100:three_prime_UTR 20.0%
!! ATAAAATAAAGGAAAGAAAG+TGG - chr3_1:67571336-67571355 Msa0370100:three_prime_UTR 20.0%
!! TATGATATGATATGTTATTG+TGG - chr3_1:67571898-67571917 Msa0370100:intron 20.0%
!!! TTTTGATGATATTCAGAAAT+CGG - chr3_1:67571924-67571943 Msa0370100:intron 20.0%
!!! ATGTGAACAAAATTTAGTTT+TGG - chr3_1:67572079-67572098 Msa0370100:intron 20.0%
!!! TTATCTTAAAGTTCTTTTTG+AGG - chr3_1:67572212-67572231 Msa0370100:intron 20.0%
!! AAATACAGTAAAGCTTAAAA+AGG + chr3_1:67572402-67572421 None:intergenic 20.0%
!!! ATCTCTTTAATATTGATTTC+AGG + chr3_1:67572561-67572580 None:intergenic 20.0%
!!! GTATAGTAAGACATTATTTT+CGG + chr3_1:67572825-67572844 None:intergenic 20.0%
!!! TTTTTGTAAAAGTTTCAGTT+AGG - chr3_1:67573446-67573465 Msa0370100:intron 20.0%
!!! TTTTGTAAAAGTTTCAGTTA+GGG - chr3_1:67573447-67573466 Msa0370100:intron 20.0%
!!! ATTTAAAACTATTTGACAGA+TGG - chr3_1:67573512-67573531 Msa0370100:intron 20.0%
!!! AATCTGAAATATTTTCTTGT+TGG - chr3_1:67573729-67573748 Msa0370100:intron 20.0%
!! CATAGTAATTTCAGTAAAAT+TGG - chr3_1:67573760-67573779 Msa0370100:intron 20.0%
!! CTTATATTTATAAAAAGGAG+AGG + chr3_1:67573979-67573998 None:intergenic 20.0%
!!! TTTTTCTTTCTTATCCTTTA+TGG - chr3_1:67574271-67574290 Msa0370100:intron 20.0%
!! TGATAATCTACATATAGTTA+AGG + chr3_1:67574354-67574373 None:intergenic 20.0%
!!! TTTCTCGATCATTTTATATA+TGG + chr3_1:67574388-67574407 None:intergenic 20.0%
!!! CACCTTTTTCTATATATATT+TGG - chr3_1:67574946-67574965 Msa0370100:intron 20.0%
!!! GAATTTTCATTTTTCTAATG+CGG + chr3_1:67575344-67575363 None:intergenic 20.0%
!!! ACATGATTTTTGCTAAAATT+AGG + chr3_1:67575366-67575385 None:intergenic 20.0%
!!! ATTTTAGCAAAAATCATGTA+AGG - chr3_1:67575367-67575386 Msa0370100:intron 20.0%
!!! TCACATAGAAGTATATTTTT+AGG - chr3_1:67575513-67575532 Msa0370100:intron 20.0%
!!! CACATAGAAGTATATTTTTA+GGG - chr3_1:67575514-67575533 Msa0370100:intron 20.0%
!!! ACATAGAAGTATATTTTTAG+GGG - chr3_1:67575515-67575534 Msa0370100:intron 20.0%
!! TATGTTTAATCAATCAAAAG+TGG - chr3_1:67575688-67575707 Msa0370100:intron 20.0%
!!! TCTTAAATTTGTTTCATAGA+TGG - chr3_1:67575807-67575826 Msa0370100:intron 20.0%
!!! TATTATTGTTGATTAATTGC+TGG + chr3_1:67576322-67576341 None:intergenic 20.0%
!!! ATAACTATTCTTTTTCTACT+AGG + chr3_1:67576417-67576436 None:intergenic 20.0%
!! TTTAGATGAAAATTTGTAAG+AGG + chr3_1:67576607-67576626 None:intergenic 20.0%
!! ATTATATAACATTAAGGTCA+AGG + chr3_1:67576878-67576897 None:intergenic 20.0%
!!! ATACGTTTTCAAACTTATTT+AGG - chr3_1:67577046-67577065 Msa0370100:five_prime_UTR 20.0%
! ACTGAAAATTTATATGTTGG+GGG - chr3_1:67571007-67571026 Msa0370100:three_prime_UTR 25.0%
! GAAACATAACTAAAATCCAA+TGG - chr3_1:67571145-67571164 Msa0370100:three_prime_UTR 25.0%
! TTGGGTATCATTTAATTAAC+GGG - chr3_1:67571261-67571280 Msa0370100:three_prime_UTR 25.0%
!!! TTTAATTAACGGGTTAGAAT+AGG - chr3_1:67571271-67571290 Msa0370100:three_prime_UTR 25.0%
!!! TTAATTAACGGGTTAGAATA+GGG - chr3_1:67571272-67571291 Msa0370100:three_prime_UTR 25.0%
! GTCCGAGTAATATAAAATAA+AGG - chr3_1:67571325-67571344 Msa0370100:three_prime_UTR 25.0%
!! TTTCTTATCATAAGTGTTGT+CGG - chr3_1:67571741-67571760 Msa0370100:intron 25.0%
! ACATTGACACTTATGATAAA+AGG + chr3_1:67571796-67571815 None:intergenic 25.0%
! ACTTCATAAAATTGCATTTG+AGG - chr3_1:67572184-67572203 Msa0370100:intron 25.0%
! CTTCATAAAATTGCATTTGA+GGG - chr3_1:67572185-67572204 Msa0370100:intron 25.0%
! GGAACAAAAAATAAGTTAAG+TGG + chr3_1:67572804-67572823 None:intergenic 25.0%
! CCTACAATTATGAAACAATA+TGG + chr3_1:67573109-67573128 None:intergenic 25.0%
! CCATATTGTTTCATAATTGT+AGG - chr3_1:67573106-67573125 Msa0370100:intron 25.0%
! TTCTATATATCTACAAGCAT+AGG - chr3_1:67573192-67573211 Msa0370100:intron 25.0%
!!! TTCAGTTAAGTTAGTTTTGA+AGG - chr3_1:67573801-67573820 Msa0370100:intron 25.0%
!!! TCAGTTAAGTTAGTTTTGAA+GGG - chr3_1:67573802-67573821 Msa0370100:intron 25.0%
!! AAGATTATGATGTTCCTTTT+AGG + chr3_1:67573923-67573942 None:intergenic 25.0%
! AAAAAAGATTGGAATGCAAA+AGG + chr3_1:67574256-67574275 None:intergenic 25.0%
! GGATAAGAAAGAAAAAAGAT+TGG + chr3_1:67574267-67574286 None:intergenic 25.0%
! ATAGTAGATAGAGAACTATA+AGG + chr3_1:67574487-67574506 None:intergenic 25.0%
! TAGCGTATAATATATCAAAC+AGG + chr3_1:67574676-67574695 None:intergenic 25.0%
! TACGCTAATGAATAGATATA+CGG - chr3_1:67574689-67574708 Msa0370100:intron 25.0%
! TAATGAATAGATATACGGAT+TGG - chr3_1:67574694-67574713 Msa0370100:intron 25.0%
!!! GATTGGTTTATATTCTACTT+TGG - chr3_1:67574711-67574730 Msa0370100:intron 25.0%
! ATGTGTAATAATGAAAACTG+AGG + chr3_1:67574761-67574780 None:intergenic 25.0%
!! TTAAAAAGTTTTTCCCTGTA+CGG - chr3_1:67574831-67574850 Msa0370100:intron 25.0%
! CGCCAAATATATATAGAAAA+AGG + chr3_1:67574951-67574970 None:intergenic 25.0%
! GTTTCAAATTGTTACATCAA+AGG - chr3_1:67575006-67575025 Msa0370100:intron 25.0%
!!! AAAAATCATGTAAGGTATTG+TGG - chr3_1:67575375-67575394 Msa0370100:intron 25.0%
!!! CATAGAAGTATATTTTTAGG+GGG - chr3_1:67575516-67575535 Msa0370100:intron 25.0%
!!! ATAGAAGTATATTTTTAGGG+GGG - chr3_1:67575517-67575536 Msa0370100:intron 25.0%
! GATTCAACGTAAATTATTGA+AGG + chr3_1:67575658-67575677 None:intergenic 25.0%
! AGCTATGTTCTCAAAAATAT+TGG - chr3_1:67575836-67575855 Msa0370100:intron 25.0%
! AATACATTCATGGTAAGTTT+CGG + chr3_1:67575944-67575963 None:intergenic 25.0%
!! ACTTTTCTCAAATACATTCA+TGG + chr3_1:67575954-67575973 None:intergenic 25.0%
!! CTACTAATAAAGCATTTATG+AGG - chr3_1:67576142-67576161 Msa0370100:intron 25.0%
!!! AACTCTGTTTTGTTTACATA+CGG + chr3_1:67576346-67576365 None:intergenic 25.0%
!! TTTATGCTGTTTGAGTTTAA+TGG - chr3_1:67576439-67576458 Msa0370100:intron 25.0%
! ATCAATAGTTCTTTCACAAA+TGG + chr3_1:67576558-67576577 None:intergenic 25.0%
! CATATTACAGTACATAAAGA+AGG + chr3_1:67576840-67576859 None:intergenic 25.0%
CTACTACTATTGCTACTATT+CGG + chr3_1:67570919-67570938 None:intergenic 30.0%
!! TAATTAACGGGTTAGAATAG+GGG - chr3_1:67571273-67571292 Msa0370100:three_prime_UTR 30.0%
CATCATTCATTCTATAGCAT+TGG + chr3_1:67571543-67571562 None:intergenic 30.0%
TTTGTGTTCCAACTCAAAAA+AGG - chr3_1:67571626-67571645 Msa0370100:intron 30.0%
GACAACACTTATGATAAGAA+AGG + chr3_1:67571742-67571761 None:intergenic 30.0%
! GTGTAACAGATTTTCTCTTA+TGG + chr3_1:67571999-67572018 None:intergenic 30.0%
! TAGAAAGCTTTTTACAACCA+TGG - chr3_1:67572258-67572277 Msa0370100:intron 30.0%
AAGTTCATATCAATCATCCA+TGG + chr3_1:67572278-67572297 None:intergenic 30.0%
TTGTACACTTAATACTGCAA+TGG - chr3_1:67572535-67572554 Msa0370100:intron 30.0%
!!! GATTGCAGAATTTTTTTCCA+AGG - chr3_1:67572578-67572597 Msa0370100:intron 30.0%
!! TGATTGATAATGGAAACAAC+AGG + chr3_1:67572774-67572793 None:intergenic 30.0%
TTGTTTCCATTATCAATCAC+AGG - chr3_1:67572775-67572794 Msa0370100:intron 30.0%
TCAAAAACCAACACTGAATT+GGG + chr3_1:67572896-67572915 None:intergenic 30.0%
TTCAAAAACCAACACTGAAT+TGG + chr3_1:67572897-67572916 None:intergenic 30.0%
!!! AATTCAGTGTTGGTTTTTGA+AGG - chr3_1:67572896-67572915 Msa0370100:intron 30.0%
AACGAACTGAATATTGCAAA+TGG + chr3_1:67573008-67573027 None:intergenic 30.0%
TATTCAGTTCGTTTGTTTAC+AGG - chr3_1:67573015-67573034 Msa0370100:intron 30.0%
ATTCAGTTCGTTTGTTTACA+GGG - chr3_1:67573016-67573035 Msa0370100:intron 30.0%
ATGGAAACTCAGCAAAATTT+AGG - chr3_1:67573065-67573084 Msa0370100:intron 30.0%
CAAAATTTAGGCATAGTGTT+AGG - chr3_1:67573077-67573096 Msa0370100:intron 30.0%
! ATTTTCCATTGTGAATTCCA+GGG - chr3_1:67573129-67573148 Msa0370100:intron 30.0%
TTTCAAATTCAAAGAAACCC+TGG + chr3_1:67573149-67573168 None:intergenic 30.0%
AAGATATCTCCACTTTGAAT+TGG - chr3_1:67573267-67573286 Msa0370100:intron 30.0%
AGATATCTCCACTTTGAATT+GGG - chr3_1:67573268-67573287 Msa0370100:intron 30.0%
! AGTTTTCCACAAATTTGTAG+AGG + chr3_1:67573369-67573388 None:intergenic 30.0%
TAGCATTTGTATGCCAATTT+CGG - chr3_1:67573397-67573416 Msa0370100:intron 30.0%
AGCAAGTATTAAACTTGATG+TGG + chr3_1:67573566-67573585 None:intergenic 30.0%
ATAAGTTATATAGAGACAGC+TGG - chr3_1:67573612-67573631 Msa0370100:CDS 30.0%
TGCAAAAATGAAACATGTGA+TGG - chr3_1:67573871-67573890 Msa0370100:CDS 30.0%
! GGAACATCATAATCTTTTAC+TGG - chr3_1:67573927-67573946 Msa0370100:intron 30.0%
ATGCAAAAGGAAAATTGTCA+GGG + chr3_1:67574243-67574262 None:intergenic 30.0%
AATGCAAAAGGAAAATTGTC+AGG + chr3_1:67574244-67574263 None:intergenic 30.0%
! TAGTTAAGGATTTGACTTCA+TGG + chr3_1:67574340-67574359 None:intergenic 30.0%
AGATAGAGAACTATAAGGAT+GGG + chr3_1:67574482-67574501 None:intergenic 30.0%
TAGATAGAGAACTATAAGGA+TGG + chr3_1:67574483-67574502 None:intergenic 30.0%
ATTACCTAGTACAATTCCTT+TGG - chr3_1:67574571-67574590 Msa0370100:intron 30.0%
!!! TCTCATTTGTTGTATCGTTT+TGG - chr3_1:67574915-67574934 Msa0370100:intron 30.0%
! TATATAGAAAAAGGTGCAAC+AGG + chr3_1:67574942-67574961 None:intergenic 30.0%
CATACTTTGATAGATTGGTA+TGG + chr3_1:67575180-67575199 None:intergenic 30.0%
GATCACATACTTTGATAGAT+TGG + chr3_1:67575185-67575204 None:intergenic 30.0%
!!! TTGCTAGTTTTGCTTTTTCT+TGG - chr3_1:67575318-67575337 Msa0370100:intron 30.0%
AGATTAAATCCACACTGAAA+AGG - chr3_1:67575407-67575426 Msa0370100:intron 30.0%
! TGATGTATTTGAAACGTTCT+GGG + chr3_1:67575465-67575484 None:intergenic 30.0%
CATAATCATAAATTCGTGTC+TGG + chr3_1:67575784-67575803 None:intergenic 30.0%
!! TGGTTATTTTACTTCATTGC+AGG - chr3_1:67576001-67576020 Msa0370100:CDS 30.0%
ATACTTGTGGAAAACTTGAA+TGG - chr3_1:67576065-67576084 Msa0370100:intron 30.0%
CACACAAATGTAATGTGTAA+GGG + chr3_1:67576190-67576209 None:intergenic 30.0%
ACACACAAATGTAATGTGTA+AGG + chr3_1:67576191-67576210 None:intergenic 30.0%
! GAGTTTAATGGTCTTGATAT+AGG - chr3_1:67576451-67576470 Msa0370100:intron 30.0%
GATATACTAAGGATTACTCA+TGG - chr3_1:67576522-67576541 Msa0370100:CDS 30.0%
!! GAAAGAACTATTGATGATGT+TGG - chr3_1:67576563-67576582 Msa0370100:CDS 30.0%
! ATTACTGCTCTTGTTTACTT+TGG - chr3_1:67576729-67576748 Msa0370100:five_prime_UTR 30.0%
AAGTTGAAAGTGGTAAAGTA+TGG - chr3_1:67576771-67576790 Msa0370100:intron 30.0%
AATGGCAATTTGAACTTTCT+AGG - chr3_1:67576918-67576937 Msa0370100:intron 30.0%
!! AATTTGAACTTTCTAGGATC+AGG - chr3_1:67576924-67576943 Msa0370100:intron 30.0%
GAAAATTTATATGTTGGGGG+CGG - chr3_1:67571010-67571029 Msa0370100:three_prime_UTR 35.0%
AAGTTTCGCACTATATAGCA+AGG + chr3_1:67571060-67571079 None:intergenic 35.0%
!! AAAATATAAAAGCACTGCCG+AGG + chr3_1:67571109-67571128 None:intergenic 35.0%
AGATTAAACACAACAGCCAT+TGG + chr3_1:67571164-67571183 None:intergenic 35.0%
TCCTAAGCAGAATATGAGTT+TGG - chr3_1:67571242-67571261 Msa0370100:three_prime_UTR 35.0%
CCTAAGCAGAATATGAGTTT+GGG - chr3_1:67571243-67571262 Msa0370100:three_prime_UTR 35.0%
! TGAGTTGGAACACAAACATA+GGG + chr3_1:67571622-67571641 None:intergenic 35.0%
!! TTGAGTTGGAACACAAACAT+AGG + chr3_1:67571623-67571642 None:intergenic 35.0%
! TGTCAAGTTGTTTGGTATTG+CGG - chr3_1:67571694-67571713 Msa0370100:intron 35.0%
AAAGGATACAAAACCTGACA+TGG + chr3_1:67571724-67571743 None:intergenic 35.0%
TCATAAGTGTCAATGTTACC+AGG - chr3_1:67571800-67571819 Msa0370100:intron 35.0%
CATAAGTGTCAATGTTACCA+GGG - chr3_1:67571801-67571820 Msa0370100:intron 35.0%
TCTATCATTGTTACATTCCC+TGG + chr3_1:67571821-67571840 None:intergenic 35.0%
! GTAACAATGATAGAAGCACA+AGG - chr3_1:67571827-67571846 Msa0370100:intron 35.0%
ATGATATTCAGAAATCGGAG+TGG - chr3_1:67571929-67571948 Msa0370100:CDS 35.0%
AATCTGTTACACCATCCATA+CGG - chr3_1:67572007-67572026 Msa0370100:intron 35.0%
TGCTCAAACTTTATCTTCGA+AGG - chr3_1:67572034-67572053 Msa0370100:intron 35.0%
AAGGAAATTGCAAGATGACA+AGG - chr3_1:67572053-67572072 Msa0370100:intron 35.0%
TATGGACAACTACAAGTTAG+TGG - chr3_1:67572357-67572376 Msa0370100:intron 35.0%
CACCACATACATGTTGAAAA+CGG + chr3_1:67572429-67572448 None:intergenic 35.0%
! AGATTGGAAGCATAAAACCT+TGG + chr3_1:67572598-67572617 None:intergenic 35.0%
TCTTAACTCACTGTCACAAA+TGG + chr3_1:67572730-67572749 None:intergenic 35.0%
TGGTTACCTGTGATTGATAA+TGG + chr3_1:67572784-67572803 None:intergenic 35.0%
!!! AGTGTTGGTTTTTGAAGGAA+GGG - chr3_1:67572901-67572920 Msa0370100:intron 35.0%
! GATTTTCCATTGTGAATTCC+AGG - chr3_1:67573128-67573147 Msa0370100:intron 35.0%
TTCCACTTATATCCTCAAAG+AGG + chr3_1:67573320-67573339 None:intergenic 35.0%
ATTCTGCCTCTACAAATTTG+TGG - chr3_1:67573360-67573379 Msa0370100:intron 35.0%
TGACAACTATCATCACCTAT+TGG + chr3_1:67573485-67573504 None:intergenic 35.0%
!! AAGTACCACTTTAGAACAGA+GGG + chr3_1:67573697-67573716 None:intergenic 35.0%
!! TAAGTACCACTTTAGAACAG+AGG + chr3_1:67573698-67573717 None:intergenic 35.0%
CGAGAAAATGCAATTCTAGA+AGG - chr3_1:67573841-67573860 Msa0370100:CDS 35.0%
! TTTAGGTTATACCAGTTGTG+CGG + chr3_1:67573906-67573925 None:intergenic 35.0%
CACAACTGGTATAACCTAAA+AGG - chr3_1:67573906-67573925 Msa0370100:CDS 35.0%
!! CTATGAGTTTTGTAGTCTGA+TGG - chr3_1:67573950-67573969 Msa0370100:intron 35.0%
!! AAAAGAGTGTCAGTAACACT+TGG + chr3_1:67574033-67574052 None:intergenic 35.0%
GTTCTAGTCAGAAATGTTGA+AGG + chr3_1:67574199-67574218 None:intergenic 35.0%
TTTCCTTTGTACACAGATCA+AGG + chr3_1:67574299-67574318 None:intergenic 35.0%
TGCATCAAATTGATCGAGAA+AGG + chr3_1:67574432-67574451 None:intergenic 35.0%
TAGGTAATACATGCATGGAA+AGG + chr3_1:67574559-67574578 None:intergenic 35.0%
TGTACTAGGTAATACATGCA+TGG + chr3_1:67574564-67574583 None:intergenic 35.0%
ATCTCCAAAGGAATTGTACT+AGG + chr3_1:67574578-67574597 None:intergenic 35.0%
! TTTTGTTCCTTCTCAGTACA+TGG - chr3_1:67574621-67574640 Msa0370100:intron 35.0%
GAAAACTGAGGAAATATGAC+TGG + chr3_1:67574749-67574768 None:intergenic 35.0%
GACTGCAAAGGTAAAATATC+AGG + chr3_1:67575107-67575126 None:intergenic 35.0%
AGCTTCATTAATGACTGCAA+AGG + chr3_1:67575119-67575138 None:intergenic 35.0%
TTTGCAGTCATTAATGAAGC+TGG - chr3_1:67575118-67575137 Msa0370100:intron 35.0%
CATTAATGAAGCTGGAATGT+TGG - chr3_1:67575126-67575145 Msa0370100:intron 35.0%
!! TTCTTTAGCATTGATTCCGT+TGG - chr3_1:67575242-67575261 Msa0370100:CDS 35.0%
!! AATCATGTAAGGTATTGTGG+AGG - chr3_1:67575378-67575397 Msa0370100:intron 35.0%
AATCCACACTGAAAAGGTTA+AGG - chr3_1:67575413-67575432 Msa0370100:CDS 35.0%
AAAGGTTAAGGTTGCAAGTT+AGG - chr3_1:67575425-67575444 Msa0370100:CDS 35.0%
! CTGATGTATTTGAAACGTTC+TGG + chr3_1:67575466-67575485 None:intergenic 35.0%
TACTAAATTGAAACCCAACC+TGG - chr3_1:67575859-67575878 Msa0370100:intron 35.0%
ATCAATACTACAAGATGACC+AGG + chr3_1:67575880-67575899 None:intergenic 35.0%
AATATTGCAAGCCAAGCAAA+GGG + chr3_1:67576045-67576064 None:intergenic 35.0%
TAATATTGCAAGCCAAGCAA+AGG + chr3_1:67576046-67576065 None:intergenic 35.0%
GGCTTGCAATATTATACTTG+TGG - chr3_1:67576052-67576071 Msa0370100:CDS 35.0%
! ACTAGGTGACATTGATTACA+TGG + chr3_1:67576400-67576419 None:intergenic 35.0%
! TGGTCTTGATATAGGTATCT+TGG - chr3_1:67576459-67576478 Msa0370100:intron 35.0%
ATATAGGTATCTTGGAGACA+CGG - chr3_1:67576467-67576486 Msa0370100:intron 35.0%
AGCTGTTAAATCATTGACGA+AGG - chr3_1:67576494-67576513 Msa0370100:intron 35.0%
!! AGAACTATTGATGATGTTGG+AGG - chr3_1:67576566-67576585 Msa0370100:CDS 35.0%
AAGAGTAGAATGACGAGTTA+AGG - chr3_1:67576628-67576647 Msa0370100:five_prime_UTR 35.0%
TAGTCTCAAGAAGTTGAAAG+TGG - chr3_1:67576761-67576780 Msa0370100:intron 35.0%
GAAAGTGGTAAAGTATGGAT+TGG - chr3_1:67576776-67576795 Msa0370100:intron 35.0%
! AAGAAGGCATAAAGCAAACA+GGG + chr3_1:67576824-67576843 None:intergenic 35.0%
! AAAGAAGGCATAAAGCAAAC+AGG + chr3_1:67576825-67576844 None:intergenic 35.0%
TATAACATTAAGGTCAAGGC+TGG + chr3_1:67576874-67576893 None:intergenic 35.0%
CTAGGATCAGGAAAAACAAA+AGG - chr3_1:67576936-67576955 Msa0370100:intron 35.0%
GTTCTTCAATTCACAACGTC+AGG + chr3_1:67570951-67570970 None:intergenic 40.0%
AGAAAATCGCAGAGAGAGAA+AGG - chr3_1:67570980-67570999 Msa0370100:three_prime_UTR 40.0%
GAAAATCGCAGAGAGAGAAA+GGG - chr3_1:67570981-67571000 Msa0370100:three_prime_UTR 40.0%
AAGGTTCTTCTGCTTAACCT+CGG + chr3_1:67571041-67571060 None:intergenic 40.0%
GGCTGTTGTGTTTAATCTAG+CGG - chr3_1:67571166-67571185 Msa0370100:three_prime_UTR 40.0%
TTTAATCTAGCGGCTACAGT+AGG - chr3_1:67571176-67571195 Msa0370100:three_prime_UTR 40.0%
CCCAAACTCATATTCTGCTT+AGG + chr3_1:67571246-67571265 None:intergenic 40.0%
AGTTTCCACCATCTCAGAAA+AGG - chr3_1:67571440-67571459 Msa0370100:CDS 40.0%
GTTTCCACCATCTCAGAAAA+GGG - chr3_1:67571441-67571460 Msa0370100:CDS 40.0%
!! TTACTTTGGTGTTGCATTGC+AGG - chr3_1:67571574-67571593 Msa0370100:intron 40.0%
!! TACTTTGGTGTTGCATTGCA+GGG - chr3_1:67571575-67571594 Msa0370100:intron 40.0%
!!! CCATCACACCTTTTTTGAGT+TGG + chr3_1:67571637-67571656 None:intergenic 40.0%
! CCAACTCAAAAAAGGTGTGA+TGG - chr3_1:67571634-67571653 Msa0370100:intron 40.0%
TTGAATGTCAAGCACTCTCA+AGG - chr3_1:67571965-67571984 Msa0370100:CDS 40.0%
AAGTTTGAGCATCAACCGTA+TGG + chr3_1:67572025-67572044 None:intergenic 40.0%
! CTCCGTTTTCAACATGTATG+TGG - chr3_1:67572424-67572443 Msa0370100:intron 40.0%
TGATGTCAGACATGTCTTGA+TGG + chr3_1:67572476-67572495 None:intergenic 40.0%
AGACATGTCTGACATCAAAG+AGG - chr3_1:67572479-67572498 Msa0370100:intron 40.0%
AAACCAACACTGAATTGGGT+AGG + chr3_1:67572892-67572911 None:intergenic 40.0%
!!! CAGTGTTGGTTTTTGAAGGA+AGG - chr3_1:67572900-67572919 Msa0370100:intron 40.0%
!! TTTTGAAGGAAGGGTAGCAT+CGG - chr3_1:67572910-67572929 Msa0370100:intron 40.0%
ATAGATACCTCAGTCCCTTT+AGG + chr3_1:67572956-67572975 None:intergenic 40.0%
AGAAACCCTGGAATTCACAA+TGG + chr3_1:67573137-67573156 None:intergenic 40.0%
AAAGAGGTCCCAATTCAAAG+TGG + chr3_1:67573279-67573298 None:intergenic 40.0%
ACTTTGAATTGGGACCTCTT+TGG - chr3_1:67573278-67573297 Msa0370100:intron 40.0%
CTTTGAATTGGGACCTCTTT+GGG - chr3_1:67573279-67573298 Msa0370100:intron 40.0%
TTTGAATTGGGACCTCTTTG+GGG - chr3_1:67573280-67573299 Msa0370100:intron 40.0%
! GACCTCTTTGAGGATATAAG+TGG - chr3_1:67573315-67573334 Msa0370100:intron 40.0%
! AAGTTGCAACTGCCTAGTTT+TGG + chr3_1:67573423-67573442 None:intergenic 40.0%
GGGTACATCTCATATCCAAT+AGG - chr3_1:67573467-67573486 Msa0370100:intron 40.0%
!! AGTACCACTTTAGAACAGAG+GGG + chr3_1:67573696-67573715 None:intergenic 40.0%
CGTTTCAATGCCAAGAATGT+GGG - chr3_1:67574081-67574100 Msa0370100:intron 40.0%
CTCTTACTAACCCACATTCT+TGG + chr3_1:67574094-67574113 None:intergenic 40.0%
!! ATGTGGGTTAGTAAGAGACA+AGG - chr3_1:67574097-67574116 Msa0370100:intron 40.0%
! AACACGTGAGACGATTTTGA+AGG - chr3_1:67574452-67574471 Msa0370100:intron 40.0%
GTTTGTACCATGTACTGAGA+AGG + chr3_1:67574631-67574650 None:intergenic 40.0%
CCACTTAACAGCGAAAGATT+TGG + chr3_1:67574653-67574672 None:intergenic 40.0%
CCAAATCTTTCGCTGTTAAG+TGG - chr3_1:67574650-67574669 Msa0370100:intron 40.0%
! TTTTCCCTGTACGGTGAATT+TGG - chr3_1:67574840-67574859 Msa0370100:intron 40.0%
! ATTGTTACATCAAAGGCACG+TGG - chr3_1:67575013-67575032 Msa0370100:intron 40.0%
! CAACCTTAACCTTTTCAGTG+TGG + chr3_1:67575419-67575438 None:intergenic 40.0%
ATAAACCGATGGAGGAATGA+TGG - chr3_1:67575544-67575563 Msa0370100:intron 40.0%
ATTGTCCATCATTCCTCCAT+CGG + chr3_1:67575552-67575571 None:intergenic 40.0%
AGGAAGGAGTCTGTATTCTA+AGG + chr3_1:67575579-67575598 None:intergenic 40.0%
AATGCATGACAAAGGTAGGA+AGG + chr3_1:67575595-67575614 None:intergenic 40.0%
GAGAAATGCATGACAAAGGT+AGG + chr3_1:67575599-67575618 None:intergenic 40.0%
TGCAGAGAAATGCATGACAA+AGG + chr3_1:67575603-67575622 None:intergenic 40.0%
TACTACAAGATGACCAGGTT+GGG + chr3_1:67575875-67575894 None:intergenic 40.0%
ATACTACAAGATGACCAGGT+TGG + chr3_1:67575876-67575895 None:intergenic 40.0%
AATAGCTATTCACAGGTAGC+AGG + chr3_1:67575905-67575924 None:intergenic 40.0%
CACAGTGAATAGCTATTCAC+AGG + chr3_1:67575912-67575931 None:intergenic 40.0%
ATGATGCTGACATCTAATGC+TGG - chr3_1:67575981-67576000 Msa0370100:CDS 40.0%
ACATGCATCACATTCCAACA+AGG - chr3_1:67576234-67576253 Msa0370100:intron 40.0%
! TAGGTTGACTATGTCCTTGT+TGG + chr3_1:67576251-67576270 None:intergenic 40.0%
TAAATCATTGACGAAGGCTG+TGG - chr3_1:67576500-67576519 Msa0370100:intron 40.0%
ATTTGTAAGAGGCTTCTGCA+CGG + chr3_1:67576596-67576615 None:intergenic 40.0%
AGGTTCTTCTGCTTAACCTC+GGG + chr3_1:67571040-67571059 None:intergenic 45.0%
GTTAGAATAGGGGTCCATTC+CGG - chr3_1:67571283-67571302 Msa0370100:three_prime_UTR 45.0%
TTCGCTCGTTTATCATCGCT+CGG + chr3_1:67571367-67571386 None:intergenic 45.0%
GAGCGAAGTGAAGACGAAAA+TGG - chr3_1:67571380-67571399 Msa0370100:CDS 45.0%
CGAAGTGAAGACGAAAATGG+AGG - chr3_1:67571383-67571402 Msa0370100:CDS 45.0%
ACTACTAGAGATTTCCACCC+AGG - chr3_1:67571477-67571496 Msa0370100:CDS 45.0%
! TTAGAGAGAGAGTGTGACCT+GGG + chr3_1:67571497-67571516 None:intergenic 45.0%
!! ACTTTGGTGTTGCATTGCAG+GGG - chr3_1:67571576-67571595 Msa0370100:intron 45.0%
GAACACAAACATAGGGCTCT+TGG + chr3_1:67571615-67571634 None:intergenic 45.0%
! GACAACGTGAGCATTTGCTA+AGG + chr3_1:67571678-67571697 None:intergenic 45.0%
! GCTCACGTTGTCAAGTTGTT+TGG - chr3_1:67571686-67571705 Msa0370100:intron 45.0%
! GATAGAAGCACAAGGAGTGT+TGG - chr3_1:67571835-67571854 Msa0370100:intron 45.0%
TTGAGCATCAACCGTATGGA+TGG + chr3_1:67572021-67572040 None:intergenic 45.0%
! GATCATTCCAAGCACTGCTA+TGG - chr3_1:67572339-67572358 Msa0370100:intron 45.0%
TAGTTGTCCATAGCAGTGCT+TGG + chr3_1:67572349-67572368 None:intergenic 45.0%
! CAAGTTAGTGGACGCATTAG+TGG - chr3_1:67572369-67572388 Msa0370100:intron 45.0%
TGACAGTGAGTTAAGACCTC+TGG - chr3_1:67572734-67572753 Msa0370100:intron 45.0%
GACAGTGAGTTAAGACCTCT+GGG - chr3_1:67572735-67572754 Msa0370100:intron 45.0%
GAATTGGGTAGGCAGCTATA+TGG + chr3_1:67572881-67572900 None:intergenic 45.0%
CTGTGCAACATGTGCCTAAA+GGG - chr3_1:67572939-67572958 Msa0370100:intron 45.0%
ATTATAGCCGTTCCCCAAAG+AGG + chr3_1:67573295-67573314 None:intergenic 45.0%
CGGCTATAATGACCTCTTTG+AGG - chr3_1:67573305-67573324 Msa0370100:intron 45.0%
AGTGGAAGTCGAACTACTAG+AGG - chr3_1:67573333-67573352 Msa0370100:intron 45.0%
TGCCAATTTCGGCCAAAACT+AGG - chr3_1:67573408-67573427 Msa0370100:intron 45.0%
!!! TGCCTAGTTTTGGCCGAAAT+TGG + chr3_1:67573413-67573432 None:intergenic 45.0%
! AAGCACTGTGACTCGACAAA+AGG - chr3_1:67573635-67573654 Msa0370100:intron 45.0%
GGGGACAAACACAAGTGAAT+AGG + chr3_1:67573677-67573696 None:intergenic 45.0%
!! TTGTCCCCTCTGTTCTAAAG+TGG - chr3_1:67573689-67573708 Msa0370100:intron 45.0%
! AGAGTGTCAGTAACACTTGG+TGG + chr3_1:67574030-67574049 None:intergenic 45.0%
GCGTTTCAATGCCAAGAATG+TGG - chr3_1:67574080-67574099 Msa0370100:intron 45.0%
GCTTCTAAGCCTTCTTCTAG+TGG - chr3_1:67574167-67574186 Msa0370100:CDS 45.0%
AGGATACTGCCACTAGAAGA+AGG + chr3_1:67574179-67574198 None:intergenic 45.0%
CACAGATCAAGGCTCCATAA+AGG + chr3_1:67574288-67574307 None:intergenic 45.0%
GAGCCTTGATCTGTGTACAA+AGG - chr3_1:67574293-67574312 Msa0370100:intron 45.0%
CGCACTAGACAAATCTCCAA+AGG + chr3_1:67574590-67574609 None:intergenic 45.0%
! GAGGAAATATGACTGGTTGC+AGG + chr3_1:67574742-67574761 None:intergenic 45.0%
!! CAACACAGCAAAGGTACTGA+GGG + chr3_1:67574876-67574895 None:intergenic 45.0%
!! TCAACACAGCAAAGGTACTG+AGG + chr3_1:67574877-67574896 None:intergenic 45.0%
! CAGTACCTTTGCTGTGTTGA+CGG - chr3_1:67574877-67574896 Msa0370100:intron 45.0%
! AGTACCTTTGCTGTGTTGAC+GGG - chr3_1:67574878-67574897 Msa0370100:intron 45.0%
GCAACAGCTGAAACTACCAA+CGG + chr3_1:67575261-67575280 None:intergenic 45.0%
AGGGGGGAAAAATAAACCGA+TGG - chr3_1:67575533-67575552 Msa0370100:intron 45.0%
GGGGAAAAATAAACCGATGG+AGG - chr3_1:67575536-67575555 Msa0370100:intron 45.0%
! TTTTGCAGACGCGACTAAGA+AGG + chr3_1:67575744-67575763 None:intergenic 45.0%
GTCGCGTCTGCAAAAAACTA+TGG - chr3_1:67575749-67575768 Msa0370100:intron 45.0%
CGAAGGCTGTGGATATACTA+AGG - chr3_1:67576511-67576530 Msa0370100:intron 45.0%
TTTGTAAGAGGCTTCTGCAC+GGG + chr3_1:67576595-67576614 None:intergenic 45.0%
ACTGATATTGCAGCTGCTTC+TGG - chr3_1:67576653-67576672 Msa0370100:five_prime_UTR 45.0%
TTCTGGTGCAAACAAGTCAC+TGG - chr3_1:67576670-67576689 Msa0370100:five_prime_UTR 45.0%
!!! CTATTTTATATAATTTTTTA+AGG - chr3_1:67573584-67573603 Msa0370100:CDS 5.0%
!! AGATAAAAAAATAAAATAAA+TGG - chr3_1:67574003-67574022 Msa0370100:intron 5.0%
!! ATATATTATCATATTATAAT+AGG + chr3_1:67576270-67576289 None:intergenic 5.0%
! CGAAACTTTTACGCACGACC+TGG - chr3_1:67571072-67571091 Msa0370100:three_prime_UTR 50.0%
ACCTGGACACGATACAACCT+CGG - chr3_1:67571089-67571108 Msa0370100:three_prime_UTR 50.0%
!! AGAGCGACCCTTTTCTGAGA+TGG + chr3_1:67571451-67571470 None:intergenic 50.0%
! GTTAGAGAGAGAGTGTGACC+TGG + chr3_1:67571498-67571517 None:intergenic 50.0%
GTATTGCGGAACACCATGTC+AGG - chr3_1:67571708-67571727 Msa0370100:intron 50.0%
GTCTTGTGTCCGACACATGT+TGG + chr3_1:67571770-67571789 None:intergenic 50.0%
TGACATCAAAGAGGAGCAGC+TGG - chr3_1:67572488-67572507 Msa0370100:intron 50.0%
!! GCTGGTGTTGTATGCACAGA+TGG - chr3_1:67572506-67572525 Msa0370100:intron 50.0%
GCGCATTACATGCAAACTGC+AGG + chr3_1:67572704-67572723 None:intergenic 50.0%
! GAGTTAAGACCTCTGGGAAC+AGG - chr3_1:67572741-67572760 Msa0370100:intron 50.0%
GGATACAATCCTGTTCCCAG+AGG + chr3_1:67572753-67572772 None:intergenic 50.0%
CTGCCTACCCAATTCAGTGT+TGG - chr3_1:67572886-67572905 Msa0370100:intron 50.0%
GCTGTGCAACATGTGCCTAA+AGG - chr3_1:67572938-67572957 Msa0370100:intron 50.0%
ACATGTGCCTAAAGGGACTG+AGG - chr3_1:67572946-67572965 Msa0370100:intron 50.0%
! ATTGGGACCTCTTTGGGGAA+CGG - chr3_1:67573285-67573304 Msa0370100:intron 50.0%
GTCAGGGCGATAGCAATTAC+AGG + chr3_1:67574227-67574246 None:intergenic 50.0%
GACGCCAAATTCACCGTACA+GGG + chr3_1:67574847-67574866 None:intergenic 50.0%
AGACGCCAAATTCACCGTAC+AGG + chr3_1:67574848-67574867 None:intergenic 50.0%
! GTACCTTTGCTGTGTTGACG+GGG - chr3_1:67574879-67574898 Msa0370100:intron 50.0%
! TACCTTTGCTGTGTTGACGG+GGG - chr3_1:67574880-67574899 Msa0370100:intron 50.0%
TAGGTATCTTGGAGACACGG+AGG - chr3_1:67576470-67576489 Msa0370100:intron 50.0%
TGGTGCAAACAAGTCACTGG+AGG - chr3_1:67576673-67576692 Msa0370100:five_prime_UTR 50.0%
TGCAAACAAGTCACTGGAGG+TGG - chr3_1:67576676-67576695 Msa0370100:five_prime_UTR 50.0%
GGCATAAAGCAAACAGGGTC+TGG + chr3_1:67576819-67576838 None:intergenic 50.0%
TTGATCCGACCCGGTAGTTC+CGG + chr3_1:67571305-67571324 None:intergenic 55.0%
TACTCGGACTTGATCCGACC+CGG + chr3_1:67571314-67571333 None:intergenic 55.0%
!!! GCGACCCTTTTCTGAGATGG+TGG + chr3_1:67571448-67571467 None:intergenic 55.0%
TGTCGGCGTCCAACATGTGT+CGG - chr3_1:67571758-67571777 Msa0370100:intron 55.0%
GGTTTCTTGCTCCGCACAAC+TGG - chr3_1:67573892-67573911 Msa0370100:CDS 55.0%
!! CACAGCAAAGGTACTGAGGG+TGG + chr3_1:67574873-67574892 None:intergenic 55.0%
CCAAGCAAAGGGTGAACAGC+TGG + chr3_1:67576034-67576053 None:intergenic 55.0%
CCAGCTGTTCACCCTTTGCT+TGG - chr3_1:67576031-67576050 Msa0370100:CDS 55.0%
! GGTCAAGGCTGGCTGATGAA+GGG + chr3_1:67576863-67576882 None:intergenic 55.0%
! AGGTCAAGGCTGGCTGATGA+AGG + chr3_1:67576864-67576883 None:intergenic 55.0%
GCCGAGGTTGTATCGTGTCC+AGG + chr3_1:67571093-67571112 None:intergenic 60.0%
GGGGTCCATTCCGGAACTAC+CGG - chr3_1:67571292-67571311 Msa0370100:three_prime_UTR 60.0%
GGGTCCATTCCGGAACTACC+GGG - chr3_1:67571293-67571312 Msa0370100:three_prime_UTR 60.0%
CCATTCCGGAACTACCGGGT+CGG - chr3_1:67571297-67571316 Msa0370100:three_prime_UTR 60.0%
! GAGAGAGAGTGTGACCTGGG+TGG + chr3_1:67571494-67571513 None:intergenic 60.0%
CTCCCCCGTCAACACAGCAA+AGG + chr3_1:67574885-67574904 None:intergenic 60.0%
CCGACCCGGTAGTTCCGGAA+TGG + chr3_1:67571300-67571319 None:intergenic 65.0%
TGTTGGGGGCGGATGACCCG+AGG - chr3_1:67571021-67571040 Msa0370100:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 67570912 67577099 67570912 ID=Msa0370100;Name=Msa0370100
chr3_1 mRNA 67570912 67577099 67570912 ID=Msa0370100-mRNA-1;Parent=Msa0370100;Name=Msa0370100-mRNA-1;_AED=0.14;_eAED=0.14;_QI=265|0.86|0.87|1|0.6|0.62|16|464|471
chr3_1 exon 67570912 67571538 67570912 ID=Msa0370100-mRNA-1:exon:13982;Parent=Msa0370100-mRNA-1
chr3_1 exon 67571925 67571988 67571925 ID=Msa0370100-mRNA-1:exon:13981;Parent=Msa0370100-mRNA-1
chr3_1 exon 67572817 67572886 67572817 ID=Msa0370100-mRNA-1:exon:13980;Parent=Msa0370100-mRNA-1
chr3_1 exon 67573538 67573644 67573538 ID=Msa0370100-mRNA-1:exon:13979;Parent=Msa0370100-mRNA-1
chr3_1 exon 67573820 67573939 67573820 ID=Msa0370100-mRNA-1:exon:13978;Parent=Msa0370100-mRNA-1
chr3_1 exon 67574098 67574200 67574098 ID=Msa0370100-mRNA-1:exon:13977;Parent=Msa0370100-mRNA-1
chr3_1 exon 67574301 67574405 67574301 ID=Msa0370100-mRNA-1:exon:13976;Parent=Msa0370100-mRNA-1
chr3_1 exon 67575044 67575125 67575044 ID=Msa0370100-mRNA-1:exon:13975;Parent=Msa0370100-mRNA-1
chr3_1 exon 67575215 67575303 67575215 ID=Msa0370100-mRNA-1:exon:13974;Parent=Msa0370100-mRNA-1
chr3_1 exon 67575412 67575530 67575412 ID=Msa0370100-mRNA-1:exon:13973;Parent=Msa0370100-mRNA-1
chr3_1 exon 67575617 67575671 67575617 ID=Msa0370100-mRNA-1:exon:13972;Parent=Msa0370100-mRNA-1
chr3_1 exon 67575937 67576071 67575937 ID=Msa0370100-mRNA-1:exon:13971;Parent=Msa0370100-mRNA-1
chr3_1 exon 67576312 67576415 67576312 ID=Msa0370100-mRNA-1:exon:13970;Parent=Msa0370100-mRNA-1
chr3_1 exon 67576513 67576702 67576513 ID=Msa0370100-mRNA-1:exon:13969;Parent=Msa0370100-mRNA-1
chr3_1 exon 67576725 67576759 67576725 ID=Msa0370100-mRNA-1:exon:13968;Parent=Msa0370100-mRNA-1
chr3_1 exon 67576960 67577099 67576960 ID=Msa0370100-mRNA-1:exon:13967;Parent=Msa0370100-mRNA-1
chr3_1 five_prime_UTR 67576960 67577099 67576960 ID=Msa0370100-mRNA-1:five_prime_utr;Parent=Msa0370100-mRNA-1
chr3_1 five_prime_UTR 67576725 67576759 67576725 ID=Msa0370100-mRNA-1:five_prime_utr;Parent=Msa0370100-mRNA-1
chr3_1 five_prime_UTR 67576613 67576702 67576613 ID=Msa0370100-mRNA-1:five_prime_utr;Parent=Msa0370100-mRNA-1
chr3_1 CDS 67576513 67576612 67576513 ID=Msa0370100-mRNA-1:cds;Parent=Msa0370100-mRNA-1
chr3_1 CDS 67576312 67576415 67576312 ID=Msa0370100-mRNA-1:cds;Parent=Msa0370100-mRNA-1
chr3_1 CDS 67575937 67576071 67575937 ID=Msa0370100-mRNA-1:cds;Parent=Msa0370100-mRNA-1
chr3_1 CDS 67575617 67575671 67575617 ID=Msa0370100-mRNA-1:cds;Parent=Msa0370100-mRNA-1
chr3_1 CDS 67575412 67575530 67575412 ID=Msa0370100-mRNA-1:cds;Parent=Msa0370100-mRNA-1
chr3_1 CDS 67575215 67575303 67575215 ID=Msa0370100-mRNA-1:cds;Parent=Msa0370100-mRNA-1
chr3_1 CDS 67575044 67575125 67575044 ID=Msa0370100-mRNA-1:cds;Parent=Msa0370100-mRNA-1
chr3_1 CDS 67574301 67574405 67574301 ID=Msa0370100-mRNA-1:cds;Parent=Msa0370100-mRNA-1
chr3_1 CDS 67574098 67574200 67574098 ID=Msa0370100-mRNA-1:cds;Parent=Msa0370100-mRNA-1
chr3_1 CDS 67573820 67573939 67573820 ID=Msa0370100-mRNA-1:cds;Parent=Msa0370100-mRNA-1
chr3_1 CDS 67573538 67573644 67573538 ID=Msa0370100-mRNA-1:cds;Parent=Msa0370100-mRNA-1
chr3_1 CDS 67572817 67572886 67572817 ID=Msa0370100-mRNA-1:cds;Parent=Msa0370100-mRNA-1
chr3_1 CDS 67571925 67571988 67571925 ID=Msa0370100-mRNA-1:cds;Parent=Msa0370100-mRNA-1
chr3_1 CDS 67571376 67571538 67571376 ID=Msa0370100-mRNA-1:cds;Parent=Msa0370100-mRNA-1
chr3_1 three_prime_UTR 67570912 67571375 67570912 ID=Msa0370100-mRNA-1:three_prime_utr;Parent=Msa0370100-mRNA-1
Gene Sequence

>Msa0370100

ATGGAGGAATTGCAACAAGCACTGAAGAATTGTAATTTAACAGTTTCCACCATCTCAGAAAAGGGTCGCTCTCTTTTTACTACTAGAGATTTCCACCCAGGGGAAGTGATTATTAGCCAAGAGCCCTATGTTTGTGTTCCAACTCAAAAAAGGTGTGATGGATGTTTCTCAACAACTAACCTTAGCAAATGCTCACGTTGTCAAAAATCGGAGTGGAAGTTGCATCGTCTTGAATGTCAAGCACTCTCAAGGCTAGACAACCATAAGAGAAAATCTGTTACACCATCCATACGGTTGATGCTCAAACTTTATCTTCGAAGGAAATTGCAAGATGACAAGATCATTCCAAGCACTGCTATGGACAACTACAAGTTAGTGGACGCATTAGTGGCTCACATGTCTGACATCAAAGAGGAGCAGCTGGTGTTGTATGCACAGATGGCTAATCTTGTACACTTAATACTGCAATGGCCTGAAATCAATATTAAAGAGATTGCAGAATTTTTTTCCAAGTTTGCATGTAATGCGCATACCATTTGTGACAGTGAGTTAAGACCTCTGGGAACAGGATTGTATCCTGTTGTTTCCATTATCAATCACAGCTGCCTACCCAATTCAGTGTTGGTTTTTGAAGGAAGGGTAGCATCGGTACGTGCTGTGCAACATGTGCCTAAAGGGACTGAGGTATTGATAAGTTATATAGAGACAGCTGGAAGCACTGTGACTCGACAAAAGGCTCTCAGAGAGCAGTACCTATTCACTTGTGTTTGTCCCCTCTGTTCTAAAGTGTTAGTTTTGAAGGGTCAGTATGAAGATGTTCGAGAAAATGCAATTCTAGAAGGATACAGATGCAAAAATGAAACATGTGATGGTTTCTTGCTCCGCACAACTGATGGAAAAGCGTTTCAATGCCAAGAATGTGGGTTAGTAAGAGACAAGGAAGAGATAAAGCAAATTGCAACTGAAATAAAATTTCTATCAGAAGAAGCTTCTAAGCCTTCTTCTAGTGGCAATTATCATGAAGCTATTTCCATATATAAAATGATCGAGAAACTGCAAACAAAACTATATCATCCTTTCTCGATCAATTTGATGCAAACACGTGAGACGATTTTGAAGTCATTAATGAAGCTGGAATGTTGGAGAGAAGCTTTAGCATATTGCAAATTGACCATACCAATCTATCAAAGAGTGTATCCAGCTGTTCACCCTTTGCTTGGCTTGCAATATTATACTTGTGGAAAACTTGAATGGTATCTTGGAGACACGGAGGAAGCTGTTAAATCATTGACGAAGGCTGTGGATATACTAAGGATTACTCATGGTACAAAGACTCCATTTGTGAAAGAACTATTGATGATGTTGGAGGAAGCCCGTGCAGAAGCCTCTTACAAATTTTCATCTAAAGAAGAGTAG

Protein sequence

>Msa0370100

MEELQQALKNCNLTVSTISEKGRSLFTTRDFHPGEVIISQEPYVCVPTQKRCDGCFSTTNLSKCSRCQKSEWKLHRLECQALSRLDNHKRKSVTPSIRLMLKLYLRRKLQDDKIIPSTAMDNYKLVDALVAHMSDIKEEQLVLYAQMANLVHLILQWPEINIKEIAEFFSKFACNAHTICDSELRPLGTGLYPVVSIINHSCLPNSVLVFEGRVASVRAVQHVPKGTEVLISYIETAGSTVTRQKALREQYLFTCVCPLCSKVLVLKGQYEDVRENAILEGYRCKNETCDGFLLRTTDGKAFQCQECGLVRDKEEIKQIATEIKFLSEEASKPSSSGNYHEAISIYKMIEKLQTKLYHPFSINLMQTRETILKSLMKLECWREALAYCKLTIPIYQRVYPAVHPLLGLQYYTCGKLEWYLGDTEEAVKSLTKAVDILRITHGTKTPFVKELLMMLEEARAEASYKFSSKEE*