AlfalfaGEDB | Msa0509890

M. sativa cultivar zhongmu-4 / Msa0509890

KEGG: K11426
GO: -
PFAM: PF00856.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0509890	XP_003601097.2	92.979	470	23	1	1	460	1	470	0.0	902

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0509890	sp\|Q7XJS0\|ASHR1_ARATH	61.895	475	167	2	1	461	1	475	0.0	621

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0509890	G7J3L4	92.979	470	23	1	1	460	1	470	0.0	902

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TFs/TRs:

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Gene ID	Type	Classification
Msa0509890	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0370100	Msa0509890	0.800415	1.457097e-48	-8.615850e-47
Msa0417520	Msa0509890	0.837740	4.348080e-57	-8.615850e-47
Msa0509890	Msa1402720	0.995343	2.494164e-215	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0509890	MtrunA17_Chr3g0115061	92.979	470	23	1	1	460	1	470	0.0	902
Msa0509890	MtrunA17_Chr8g0375381	24.451	319	165	13	13	277	8	304	3.24e-13	71.2
Msa0509890	MtrunA17_Chr3g0128421	28.205	156	95	4	172	325	459	599	1.10e-11	67.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0509890	AT2G17900.1	61.895	475	167	2	1	461	6	480	0.0	621

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Find 135 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAACTATTCTCAAAT+GGG	0.409119	3_4:+58492038	None:intergenic
AAACCAACACTGAATTGGGT+AGG	0.637837	3_4:+58495856	None:intergenic
AAAGGAACTATTCTCAAATG+GGG	0.640781	3_4:+58492039	None:intergenic
AAATATGGTAAAGTATGGAT+TGG	0.533262	3_4:-58492207	Msa0509890:three_prime_UTR
AAGCACTGTGACTCGACAAA+AGG	0.521126	3_4:-58495110	Msa0509890:CDS
AAGGAAATTGCAAGATGACA+AGG	0.615659	3_4:-58496689	Msa0509890:intron
AAGTACCACTTTAGAACAGA+GGG	0.532968	3_4:+58495051	None:intergenic
AAGTTAAATATGGTAAAGTA+TGG	0.374345	3_4:-58492212	Msa0509890:three_prime_UTR
AAGTTTGAGCATCAACCGTA+TGG	0.550663	3_4:+58496720	None:intergenic
AATACTGAAAATTTATATGT+TGG	0.431010	3_4:-58497543	Msa0509890:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTAATCACACTCATTCATA+TGG	-	chr3_4:58491959-58491978	Msa0509890:three_prime_UTR	30.0%
GTTAAGCAGAATATGAGTTT+GGG	-	chr3_4:58492135-58492154	Msa0509890:three_prime_UTR	30.0%
CATCATTCATTCTATAGCAT+TGG	+	chr3_4:58492449-58492468	None:intergenic	30.0%
TTTGTGTTCCAACTCAAAAA+AGG	-	chr3_4:58492524-58492543	Msa0509890:intron	30.0%
GACAACACTTATGATAAGAA+AGG	+	chr3_4:58492640-58492659	None:intergenic	30.0%
ATCATAAGTGTCAATGTTAC+AGG	-	chr3_4:58492697-58492716	Msa0509890:intron	30.0%
TTCTAACTTAAATAGCAGCA+TGG	+	chr3_4:58493016-58493035	None:intergenic	30.0%
AAGTTCATATCAATCATCCA+TGG	+	chr3_4:58493175-58493194	None:intergenic	30.0%
TTGTACACTTAATACTGCAA+TGG	-	chr3_4:58493432-58493451	Msa0509890:intron	30.0%
TTGTTTCCATTATCAATCAC+AGG	-	chr3_4:58493669-58493688	Msa0509890:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	58491932	58497729	58491932	ID=Msa0509890;Name=Msa0509890
chr3_4	mRNA	58491932	58497729	58491932	ID=Msa0509890-mRNA-1;Parent=Msa0509890;Name=Msa0509890-mRNA-1;_AED=0.16;_eAED=0.16;_QI=339\|0.92\|0.92\|1\|0.76\|0.85\|14\|438\|467
chr3_4	exon	58491932	58492532	58491932	ID=Msa0509890-mRNA-1:exon:13610;Parent=Msa0509890-mRNA-1
chr3_4	exon	58492988	58493051	58492988	ID=Msa0509890-mRNA-1:exon:13609;Parent=Msa0509890-mRNA-1
chr3_4	exon	58493605	58493674	58493605	ID=Msa0509890-mRNA-1:exon:13608;Parent=Msa0509890-mRNA-1
chr3_4	exon	58494292	58494398	58494292	ID=Msa0509890-mRNA-1:exon:13607;Parent=Msa0509890-mRNA-1
chr3_4	exon	58494575	58494694	58494575	ID=Msa0509890-mRNA-1:exon:13606;Parent=Msa0509890-mRNA-1
chr3_4	exon	58494854	58494944	58494854	ID=Msa0509890-mRNA-1:exon:13605;Parent=Msa0509890-mRNA-1
chr3_4	exon	58495057	58495161	58495057	ID=Msa0509890-mRNA-1:exon:13604;Parent=Msa0509890-mRNA-1
chr3_4	exon	58495800	58495881	58495800	ID=Msa0509890-mRNA-1:exon:13603;Parent=Msa0509890-mRNA-1
chr3_4	exon	58495971	58496059	58495971	ID=Msa0509890-mRNA-1:exon:13602;Parent=Msa0509890-mRNA-1
chr3_4	exon	58496165	58496283	58496165	ID=Msa0509890-mRNA-1:exon:13601;Parent=Msa0509890-mRNA-1
chr3_4	exon	58496370	58496424	58496370	ID=Msa0509890-mRNA-1:exon:13600;Parent=Msa0509890-mRNA-1
chr3_4	exon	58496690	58496824	58496690	ID=Msa0509890-mRNA-1:exon:13599;Parent=Msa0509890-mRNA-1
chr3_4	exon	58497064	58497167	58497064	ID=Msa0509890-mRNA-1:exon:13598;Parent=Msa0509890-mRNA-1
chr3_4	exon	58497291	58497729	58497291	ID=Msa0509890-mRNA-1:exon:13597;Parent=Msa0509890-mRNA-1
chr3_4	five_prime_UTR	58497391	58497729	58497391	ID=Msa0509890-mRNA-1:five_prime_utr;Parent=Msa0509890-mRNA-1
chr3_4	CDS	58497291	58497390	58497291	ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1
chr3_4	CDS	58497064	58497167	58497064	ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1
chr3_4	CDS	58496690	58496824	58496690	ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1
chr3_4	CDS	58496370	58496424	58496370	ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1
chr3_4	CDS	58496165	58496283	58496165	ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1
chr3_4	CDS	58495971	58496059	58495971	ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1
chr3_4	CDS	58495800	58495881	58495800	ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1
chr3_4	CDS	58495057	58495161	58495057	ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1
chr3_4	CDS	58494854	58494944	58494854	ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1
chr3_4	CDS	58494575	58494694	58494575	ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1
chr3_4	CDS	58494292	58494398	58494292	ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1
chr3_4	CDS	58493605	58493674	58493605	ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1
chr3_4	CDS	58492988	58493051	58492988	ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1
chr3_4	CDS	58492370	58492532	58492370	ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1
chr3_4	three_prime_UTR	58491932	58492369	58491932	ID=Msa0509890-mRNA-1:three_prime_utr;Parent=Msa0509890-mRNA-1

Gene Sequence

>Msa0509890

ATGGAGGAATTGCAACAAGCACTGAAGAATTGTAATTTAACAGTTTCCACCATCTCAGAAAAGGGTCGCTCTCTTTTTACTACTAAAGATTTCCACCCAGGGGAAGTGATTATTAGCCAAGAGCCCTATGTTTGTGTTCCAACTCAAAAAAGGTGTGATGGATGTTTCTCAACAACTAACCTTAGCAAATGCTCACGTTGTCAAAAATCGGAGTGGAAATTGCATCGTCTTGAATGTCAAGCACTCTCAAGGCTAGACAACCATAAGAGAAAATCTGTTACACCATCCATACGGTTGATGCTCAAACTTTATCTTCGAAGGAAATTGCAAGATGACAAGATCATTCCAAGCACTGCTATGGACAACTACAAGTTAGTGGAGGCATTAGTGGCTCACATGTCTGACATCAAAGAGGAGCAGCTGGTGTTGTATGCACAGATGGCTAATCTTGTACACTTAATACTGCAATGGCCTGAAATCAATATTAAAGAGATTGCAGAATTTTTTTCCAAGTTTGCATGTAATGCGCATACCATTTGTGACAGTGAGTTAAGACCTCTGGGAACAGGATTGTATCCTGTTGTTTCCATTATCAATCACAGCTGCCTACCCAATTCAGTGTTGGTTTTTGAAGGAAGGGTAGCATCGGTACGTGCTGTGCAACATGTGCCTAAAGGGACTGAGGTATTGATAAGTTATATAGAGACAGCTGGAAGCACTGTGACTCGACAAAAGGCTCTCAGAGAGCAGTACCTATTCACTTGTGTTTGTCCCCTCTGTTCTAAAGTGGGTCAGTATGAAGATGTTCGAGAAAATGCAATTCTAGAAGGATACAGATGCAAAAATGAAACATGTGATGGTTTCTTGCTCCGCACAACTGATGGAAAAGCATTTCAATGCCAAGAATGTGGGTTAGTAAGAGACAAGGAAGAGATAAAGCAAATTGCAACTGAAATAAAATTTCTATCAGAAGAAGCTTCTAAGCCTTCTTCTAGTGGCAATTATCATGAAGCTATTTCCATATATAAAATGATCGAGAAACTGCAAACAAAACTATATCACCCTTTCTCGATCAATTTGATGCAAACACGAGAGGCGATTTTGAAGTCATTAATGAAGCTGGAGTATTGGAGAGAAGCTTTAGCATATTGCAAATTGACCATACCAATCTATCAAAGAGTGTATCCAGCTGTTCACCCTTTGCTTGGCTTGCAATATTATACTTGTGGAAAACTTGAATGGTATCTTGGAGACACAGGGAAAGCTATTAAATCATTGACCAAGGCAGTGGATATACTAAGGATTACTCATGGTACAAAGACTCCATTAGTGAAGGAACTATTGATGATGTTGGAGGAAGCCCGTGCAGAAGCCTCTTACAAATTGTCATCAAAAGAAGAGTAG

Protein sequence

>Msa0509890

MEELQQALKNCNLTVSTISEKGRSLFTTKDFHPGEVIISQEPYVCVPTQKRCDGCFSTTNLSKCSRCQKSEWKLHRLECQALSRLDNHKRKSVTPSIRLMLKLYLRRKLQDDKIIPSTAMDNYKLVEALVAHMSDIKEEQLVLYAQMANLVHLILQWPEINIKEIAEFFSKFACNAHTICDSELRPLGTGLYPVVSIINHSCLPNSVLVFEGRVASVRAVQHVPKGTEVLISYIETAGSTVTRQKALREQYLFTCVCPLCSKVGQYEDVRENAILEGYRCKNETCDGFLLRTTDGKAFQCQECGLVRDKEEIKQIATEIKFLSEEASKPSSSGNYHEAISIYKMIEKLQTKLYHPFSINLMQTREAILKSLMKLEYWREALAYCKLTIPIYQRVYPAVHPLLGLQYYTCGKLEWYLGDTGKAIKSLTKAVDILRITHGTKTPLVKELLMMLEEARAEASYKLSSKEE*