Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509890 | XP_003601097.2 | 92.979 | 470 | 23 | 1 | 1 | 460 | 1 | 470 | 0.0 | 902 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509890 | sp|Q7XJS0|ASHR1_ARATH | 61.895 | 475 | 167 | 2 | 1 | 461 | 1 | 475 | 0.0 | 621 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509890 | G7J3L4 | 92.979 | 470 | 23 | 1 | 1 | 460 | 1 | 470 | 0.0 | 902 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0509890 | TR | SET |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0370100 | Msa0509890 | 0.800415 | 1.457097e-48 | -8.615850e-47 |
| Msa0417520 | Msa0509890 | 0.837740 | 4.348080e-57 | -8.615850e-47 |
| Msa0509890 | Msa1402720 | 0.995343 | 2.494164e-215 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509890 | MtrunA17_Chr3g0115061 | 92.979 | 470 | 23 | 1 | 1 | 460 | 1 | 470 | 0.0 | 902 |
| Msa0509890 | MtrunA17_Chr8g0375381 | 24.451 | 319 | 165 | 13 | 13 | 277 | 8 | 304 | 3.24e-13 | 71.2 |
| Msa0509890 | MtrunA17_Chr3g0128421 | 28.205 | 156 | 95 | 4 | 172 | 325 | 459 | 599 | 1.10e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509890 | AT2G17900.1 | 61.895 | 475 | 167 | 2 | 1 | 461 | 6 | 480 | 0.0 | 621 |
Find 135 sgRNAs with CRISPR-Local
Find 336 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCTTTAATATTGATTTC+AGG | 0.234425 | 3_4:+58496184 | None:intergenic |
| TCTTCACTTCACTCGTTTAT+CGG | 0.237874 | 3_4:+58497396 | None:intergenic |
| ATTTAATTAACGGGTTATAT+CGG | 0.277974 | 3_4:-58497477 | Msa0509890:five_prime_UTR |
| CTCTTACTAACCCACATTCT+TGG | 0.284514 | 3_4:+58494653 | None:intergenic |
| TAAAATGTAAAACGGATAAA+AGG | 0.318191 | 3_4:+58492021 | None:intergenic |
| GGTTAAGCAGAATATGAGTT+TGG | 0.325261 | 3_4:-58497505 | Msa0509890:five_prime_UTR |
| ACTCTGGAAATTTGCTTAGA+TGG | 0.326933 | 3_4:-58492242 | Msa0509890:three_prime_UTR |
| ACTTTACCATATTTAACTTC+TGG | 0.333208 | 3_4:+58492216 | None:intergenic |
| CAAATCATTATATAACATTA+AGG | 0.333564 | 3_4:+58492126 | None:intergenic |
| TGATCTTGATATAGGTATCT+TGG | 0.355193 | 3_4:-58492524 | Msa0509890:intron |
| ATACTGAAAATTTATATGTT+GGG | 0.361187 | 3_4:-58497542 | Msa0509890:five_prime_UTR |
| ATCAATAGTTCCTTCACTAA+TGG | 0.370780 | 3_4:+58492428 | None:intergenic |
| AAGTTAAATATGGTAAAGTA+TGG | 0.374345 | 3_4:-58492212 | Msa0509890:three_prime_UTR |
| TTGGGTATAATTTAATTAAC+GGG | 0.385288 | 3_4:-58497486 | Msa0509890:five_prime_UTR |
| TAAAAGGAACTATTCTCAAA+TGG | 0.386662 | 3_4:+58492037 | None:intergenic |
| GGTTTCTTGCTCCGCACAAC+TGG | 0.393388 | 3_4:-58494853 | Msa0509890:intron |
| CCAGCTGTTCACCCTTTGCT+TGG | 0.395564 | 3_4:-58493021 | Msa0509890:CDS |
| CAAGTTAGTGGAGGCATTAG+TGG | 0.396160 | 3_4:-58496373 | Msa0509890:CDS |
| TGGTCTCCAGAAGTTAAATA+TGG | 0.398324 | 3_4:-58492222 | Msa0509890:three_prime_UTR |
| CGAGAAAATGCAATTCTAGA+AGG | 0.401251 | 3_4:-58494904 | Msa0509890:CDS |
| TTTGGGTATAATTTAATTAA+CGG | 0.402778 | 3_4:-58497487 | Msa0509890:five_prime_UTR |
| CTACTACTATTGCTACTATC+TGG | 0.403144 | 3_4:+58497619 | None:intergenic |
| GATGGCATACTTTGATAGAT+TGG | 0.406419 | 3_4:+58493595 | None:intergenic |
| TGGTTACCTGTGATTGATAA+TGG | 0.407535 | 3_4:+58495964 | None:intergenic |
| AAAAGGAACTATTCTCAAAT+GGG | 0.409119 | 3_4:+58492038 | None:intergenic |
| TGTAATCACACTCATTCATA+TGG | 0.415406 | 3_4:-58497680 | Msa0509890:five_prime_UTR |
| TGACAGTGAGTTAAGACCTC+TGG | 0.417510 | 3_4:-58496011 | Msa0509890:CDS |
| TTTAATTAACGGGTTATATC+GGG | 0.424062 | 3_4:-58497476 | Msa0509890:five_prime_UTR |
| ATACTTGTGGAAAACTTGAA+TGG | 0.426325 | 3_4:-58492987 | Msa0509890:intron |
| AATACTGAAAATTTATATGT+TGG | 0.431010 | 3_4:-58497543 | Msa0509890:five_prime_UTR |
| AATTTAAACTTTCCAGTAGC+AGG | 0.431477 | 3_4:-58492084 | Msa0509890:three_prime_UTR |
| TGCATCAAATTGATCGAGAA+AGG | 0.433641 | 3_4:+58494314 | None:intergenic |
| GTTAAGCAGAATATGAGTTT+GGG | 0.438922 | 3_4:-58497504 | Msa0509890:five_prime_UTR |
| ACCGATATCACAGCTGCTTC+TGG | 0.444577 | 3_4:-58492330 | Msa0509890:three_prime_UTR |
| GAGTTAAGACCTCTGGGAAC+AGG | 0.450124 | 3_4:-58496004 | Msa0509890:CDS |
| GAGTAATATAAAATAAATAA+AGG | 0.451846 | 3_4:-58497440 | Msa0509890:five_prime_UTR |
| CCAAGCAAAGGGTGAACAGC+TGG | 0.455085 | 3_4:+58493021 | None:intergenic |
| TTTGCAGTCATTAATGAAGC+TGG | 0.455096 | 3_4:-58493659 | Msa0509890:intron |
| GTTCTTCAATTCATAACGTC+AGG | 0.459168 | 3_4:+58497590 | None:intergenic |
| GGGGACAAACACAAGTGAAT+AGG | 0.464095 | 3_4:+58495071 | None:intergenic |
| TGCTCAAACTTTATCTTCGA+AGG | 0.464527 | 3_4:-58496708 | Msa0509890:CDS |
| CTGTGCAACATGTGCCTAAA+GGG | 0.466513 | 3_4:-58495806 | Msa0509890:CDS |
| TACTGAAAATTTATATGTTG+GGG | 0.468405 | 3_4:-58497541 | Msa0509890:five_prime_UTR |
| AGTTTCCACCATCTCAGAAA+AGG | 0.468581 | 3_4:-58497327 | Msa0509890:CDS |
| ATGATTGCACTTGTTTACTC+TGG | 0.471129 | 3_4:-58492258 | Msa0509890:three_prime_UTR |
| ATAAAGGAAGGGAAAGAAAG+TGG | 0.472255 | 3_4:-58497424 | Msa0509890:five_prime_UTR |
| CATTAATGAAGCTGGAGTAT+TGG | 0.474560 | 3_4:-58493651 | Msa0509890:CDS |
| TACAAACAAGCCACTGGAGC+TGG | 0.475092 | 3_4:-58492307 | Msa0509890:three_prime_UTR |
| ACATTAAGGCTGGCTGATGA+AGG | 0.476956 | 3_4:+58492140 | None:intergenic |
| ACCAGAAGCAGCTGTGATAT+CGG | 0.482268 | 3_4:+58492329 | None:intergenic |
| ATAGATACCTCAGTCCCTTT+AGG | 0.485587 | 3_4:+58495792 | None:intergenic |
| TTGAGTTGGAACACAAACAT+AGG | 0.489336 | 3_4:+58497121 | None:intergenic |
| CTTGCAGCTAAAATGTAAAA+CGG | 0.490916 | 3_4:+58492013 | None:intergenic |
| TTGTTTCCATTATCAATCAC+AGG | 0.492390 | 3_4:-58495970 | Msa0509890:intron |
| GGCTTGCAATATTATACTTG+TGG | 0.493062 | 3_4:-58493000 | Msa0509890:CDS |
| AATATAAAATAAATAAAGGA+AGG | 0.494622 | 3_4:-58497436 | Msa0509890:five_prime_UTR |
| CCTTAGTATATCCACTGCCT+TGG | 0.497065 | 3_4:+58492472 | None:intergenic |
| GAACACAAACATAGGGCTCT+TGG | 0.499515 | 3_4:+58497129 | None:intergenic |
| GAGTGAAGTGAAGACGGAAA+TGG | 0.501432 | 3_4:-58497387 | Msa0509890:exon |
| TTTGTAAGAGGCTTCTGCAC+GGG | 0.511710 | 3_4:+58492391 | None:intergenic |
| GATCATTCCAAGCACTGCTA+TGG | 0.511797 | 3_4:-58496403 | Msa0509890:CDS |
| TCTTAACTCACTGTCACAAA+TGG | 0.513188 | 3_4:+58496018 | None:intergenic |
| CTCATATTCTGCTTAACCTC+GGG | 0.513380 | 3_4:+58497510 | None:intergenic |
| GCATTTCAATGCCAAGAATG+TGG | 0.517194 | 3_4:-58494664 | Msa0509890:CDS |
| TAAATCATTGACCAAGGCAG+TGG | 0.519906 | 3_4:-58492483 | Msa0509890:CDS |
| AAGCACTGTGACTCGACAAA+AGG | 0.521126 | 3_4:-58495110 | Msa0509890:CDS |
| TTGTCCCCTCTGTTCTAAAG+TGG | 0.523368 | 3_4:-58495056 | Msa0509890:intron |
| GAAGGAACTATTGATGATGT+TGG | 0.529169 | 3_4:-58492420 | Msa0509890:CDS |
| CCAAGGCAGTGGATATACTA+AGG | 0.529257 | 3_4:-58492472 | Msa0509890:CDS |
| GCATCAAATTGATCGAGAAA+GGG | 0.531480 | 3_4:+58494315 | None:intergenic |
| ATAAGTTATATAGAGACAGC+TGG | 0.532422 | 3_4:-58495133 | Msa0509890:CDS |
| AGGATACTGCCACTAGAAGA+AGG | 0.532430 | 3_4:+58494568 | None:intergenic |
| AAGTACCACTTTAGAACAGA+GGG | 0.532968 | 3_4:+58495051 | None:intergenic |
| AAATATGGTAAAGTATGGAT+TGG | 0.533262 | 3_4:-58492207 | Msa0509890:three_prime_UTR |
| GTTTCCACCATCTCAGAAAA+GGG | 0.534104 | 3_4:-58497326 | Msa0509890:CDS |
| TCATTATATAACATTAAGGC+TGG | 0.534161 | 3_4:+58492130 | None:intergenic |
| TGAGTTGGAACACAAACATA+GGG | 0.536392 | 3_4:+58497122 | None:intergenic |
| TGACATCAAAGAGGAGCAGC+TGG | 0.537970 | 3_4:-58496254 | Msa0509890:CDS |
| CTGCCTACCCAATTCAGTGT+TGG | 0.538934 | 3_4:-58495859 | Msa0509890:CDS |
| TAATATTGCAAGCCAAGCAA+AGG | 0.544619 | 3_4:+58493009 | None:intergenic |
| GCTTCTAAGCCTTCTTCTAG+TGG | 0.547425 | 3_4:-58494577 | Msa0509890:CDS |
| GATTTAAACAATCAATGAAA+GGG | 0.549170 | 3_4:-58491991 | Msa0509890:three_prime_UTR |
| AAGTTTGAGCATCAACCGTA+TGG | 0.550663 | 3_4:+58496720 | None:intergenic |
| CAAAAGAAGAGTAGAATGGC+GGG | 0.553721 | 3_4:-58492361 | Msa0509890:exon |
| TAGTTGTCCATAGCAGTGCT+TGG | 0.554117 | 3_4:+58496396 | None:intergenic |
| TATGGACAACTACAAGTTAG+TGG | 0.554822 | 3_4:-58496385 | Msa0509890:CDS |
| AGATTTAAACAATCAATGAA+AGG | 0.561410 | 3_4:-58491992 | Msa0509890:three_prime_UTR |
| GACAGTGAGTTAAGACCTCT+GGG | 0.564404 | 3_4:-58496010 | Msa0509890:CDS |
| TGATTGATAATGGAAACAAC+AGG | 0.566394 | 3_4:+58495974 | None:intergenic |
| CATTTCAATGCCAAGAATGT+GGG | 0.570052 | 3_4:-58494663 | Msa0509890:CDS |
| CATACTTTGATAGATTGGTA+TGG | 0.571289 | 3_4:+58493600 | None:intergenic |
| TTGAGCATCAACCGTATGGA+TGG | 0.572598 | 3_4:+58496724 | None:intergenic |
| TATAGGTATCTTGGAGACAC+AGG | 0.573913 | 3_4:-58492515 | Msa0509890:intron |
| TTGTACACTTAATACTGCAA+TGG | 0.575595 | 3_4:-58496207 | Msa0509890:CDS |
| TTGAATGTCAAGCACTCTCA+AGG | 0.577097 | 3_4:-58496777 | Msa0509890:CDS |
| AATATTGCAAGCCAAGCAAA+GGG | 0.578542 | 3_4:+58493010 | None:intergenic |
| TCATCAAAAGAAGAGTAGAA+TGG | 0.582008 | 3_4:-58492365 | Msa0509890:exon |
| GCTGTGCAACATGTGCCTAA+AGG | 0.597001 | 3_4:-58495807 | Msa0509890:CDS |
| TTCTGGTACAAACAAGCCAC+TGG | 0.598173 | 3_4:-58492313 | Msa0509890:three_prime_UTR |
| GCTGGTGTTGTATGCACAGA+TGG | 0.598430 | 3_4:-58496236 | Msa0509890:CDS |
| CATTAAGGCTGGCTGATGAA+GGG | 0.599694 | 3_4:+58492141 | None:intergenic |
| ACTACTAAAGATTTCCACCC+AGG | 0.601540 | 3_4:-58497290 | Msa0509890:intron |
| ACTCATATTCTGCTTAACCT+CGG | 0.607813 | 3_4:+58497509 | None:intergenic |
| TGAAGTGAAGACGGAAATGG+AGG | 0.608547 | 3_4:-58497384 | Msa0509890:exon |
| GACAACGTGAGCATTTGCTA+AGG | 0.614070 | 3_4:+58497066 | None:intergenic |
| AAGGAAATTGCAAGATGACA+AGG | 0.615659 | 3_4:-58496689 | Msa0509890:intron |
| ATTCTGTGATCCAGCTCCAG+TGG | 0.617317 | 3_4:+58492297 | None:intergenic |
| ATATAAAATAAATAAAGGAA+GGG | 0.621972 | 3_4:-58497435 | Msa0509890:five_prime_UTR |
| TACAAAGACTCCATTAGTGA+AGG | 0.622523 | 3_4:-58492438 | Msa0509890:CDS |
| ACTGAAAATTTATATGTTGG+GGG | 0.624966 | 3_4:-58497540 | Msa0509890:five_prime_UTR |
| ACTACACTTATGCCTCCTGA+TGG | 0.626456 | 3_4:-58491931 | None:intergenic |
| ATGTGGGTTAGTAAGAGACA+AGG | 0.627932 | 3_4:-58494647 | Msa0509890:CDS |
| CAATTTGATGCAAACACGAG+AGG | 0.630016 | 3_4:-58494303 | Msa0509890:CDS |
| ATTTGTAAGAGGCTTCTGCA+CGG | 0.631187 | 3_4:+58492390 | None:intergenic |
| TTTAGGTTATACCAGTTGTG+CGG | 0.631225 | 3_4:+58494842 | None:intergenic |
| AGCTATTAAATCATTGACCA+AGG | 0.634421 | 3_4:-58492489 | Msa0509890:CDS |
| AATCTGTTACACCATCCATA+CGG | 0.635943 | 3_4:-58496735 | Msa0509890:CDS |
| AAACCAACACTGAATTGGGT+AGG | 0.637837 | 3_4:+58495856 | None:intergenic |
| ATAAACGAGTGAAGTGAAGA+CGG | 0.639680 | 3_4:-58497393 | Msa0509890:five_prime_UTR |
| AAAGGAACTATTCTCAAATG+GGG | 0.640781 | 3_4:+58492039 | None:intergenic |
| ATTAACGGGTTATATCGGGT+CGG | 0.642736 | 3_4:-58497472 | Msa0509890:five_prime_UTR |
| GATATACTAAGGATTACTCA+TGG | 0.643148 | 3_4:-58492461 | Msa0509890:CDS |
| GGAACTATTGATGATGTTGG+AGG | 0.643675 | 3_4:-58492417 | Msa0509890:CDS |
| TCAAAAGAAGAGTAGAATGG+CGG | 0.649801 | 3_4:-58492362 | Msa0509890:exon |
| GAGAGAGAGAGTGACCTGGG+TGG | 0.653070 | 3_4:+58497276 | None:intergenic |
| AGACATGTCTGACATCAAAG+AGG | 0.653286 | 3_4:-58496263 | Msa0509890:CDS |
| ACATGTGCCTAAAGGGACTG+AGG | 0.674349 | 3_4:-58495799 | Msa0509890:intron |
| ATGATATTCAGAAATCGGAG+TGG | 0.676289 | 3_4:-58496813 | Msa0509890:intron |
| ATAGGTATCTTGGAGACACA+GGG | 0.676601 | 3_4:-58492514 | Msa0509890:intron |
| AGTCAGATTCTACCATCAGG+AGG | 0.680431 | 3_4:+58491919 | None:intergenic |
| TAAGTACCACTTTAGAACAG+AGG | 0.686937 | 3_4:+58495050 | None:intergenic |
| CGTTATGAATTGAAGAACAG+AGG | 0.693783 | 3_4:-58497585 | Msa0509890:five_prime_UTR |
| GGACAACTACAAGTTAGTGG+AGG | 0.710755 | 3_4:-58496382 | Msa0509890:CDS |
| GGATACAATCCTGTTCCCAG+AGG | 0.760315 | 3_4:+58495995 | None:intergenic |
| AGTACCACTTTAGAACAGAG+GGG | 0.783095 | 3_4:+58495052 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAGTAATATAAAATAAATAA+AGG | - | chr3_4:58492199-58492218 | Msa0509890:three_prime_UTR | 10.0% |
| !! | AATATAAAATAAATAAAGGA+AGG | - | chr3_4:58492203-58492222 | Msa0509890:three_prime_UTR | 10.0% |
| !! | ATATAAAATAAATAAAGGAA+GGG | - | chr3_4:58492204-58492223 | Msa0509890:three_prime_UTR | 10.0% |
| !!! | ATTAATTTAAAACTATTTGA+CGG | - | chr3_4:58494402-58494421 | Msa0509890:intron | 10.0% |
| !!! | TTTTGTTTTTAAATTATAGA+TGG | - | chr3_4:58494948-58494967 | Msa0509890:intron | 10.0% |
| !! | AAAAAATTTCAAACTTATTT+AGG | - | chr3_4:58497675-58497694 | Msa0509890:five_prime_UTR | 10.0% |
| !! | AATACTGAAAATTTATATGT+TGG | - | chr3_4:58492096-58492115 | Msa0509890:three_prime_UTR | 15.0% |
| !! | ATACTGAAAATTTATATGTT+GGG | - | chr3_4:58492097-58492116 | Msa0509890:three_prime_UTR | 15.0% |
| !! | TTTGGGTATAATTTAATTAA+CGG | - | chr3_4:58492152-58492171 | Msa0509890:three_prime_UTR | 15.0% |
| !!! | TATATCAACTAATTTAAGAT+TGG | + | chr3_4:58493511-58493530 | None:intergenic | 15.0% |
| !!! | TGTCATTTAAAGATTATTAA+TGG | - | chr3_4:58493940-58493959 | Msa0509890:intron | 15.0% |
| !!! | TCAGTCTTATATTTATAAAA+AGG | + | chr3_4:58494878-58494897 | None:intergenic | 15.0% |
| !! | TATACTAATGAATAGATATA+CGG | - | chr3_4:58495584-58495603 | Msa0509890:intron | 15.0% |
| !! | AAATCAATTATTGCATAAAT+GGG | + | chr3_4:58495919-58495938 | None:intergenic | 15.0% |
| !! | AAAATCAATTATTGCATAAA+TGG | + | chr3_4:58495920-58495939 | None:intergenic | 15.0% |
| !! | CAAATCATTATATAACATTA+AGG | + | chr3_4:58497516-58497535 | None:intergenic | 15.0% |
| !! | TACTGAAAATTTATATGTTG+GGG | - | chr3_4:58492098-58492117 | Msa0509890:three_prime_UTR | 20.0% |
| !! | TTGGGTATAATTTAATTAAC+GGG | - | chr3_4:58492153-58492172 | Msa0509890:three_prime_UTR | 20.0% |
| !!! | ATTTAATTAACGGGTTATAT+CGG | - | chr3_4:58492162-58492181 | Msa0509890:three_prime_UTR | 20.0% |
| !!! | AATGAATGATGTTTTTACTT+TGG | - | chr3_4:58492458-58492477 | Msa0509890:CDS | 20.0% |
| !! | TATGATATGATATGTTATTG+TGG | - | chr3_4:58492795-58492814 | Msa0509890:intron | 20.0% |
| !!! | TTTTGATGATATTCAGAAAT+CGG | - | chr3_4:58492821-58492840 | Msa0509890:intron | 20.0% |
| !!! | ATGTGAACAAAATTTAGTTT+TGG | - | chr3_4:58492976-58492995 | Msa0509890:intron | 20.0% |
| !!! | TTATCTTAAAGTTCTTTTTG+AGG | - | chr3_4:58493109-58493128 | Msa0509890:intron | 20.0% |
| !! | AAATACAGTAAAGCTTAAAA+AGG | + | chr3_4:58493299-58493318 | None:intergenic | 20.0% |
| !!! | ATCTCTTTAATATTGATTTC+AGG | + | chr3_4:58493458-58493477 | None:intergenic | 20.0% |
| !!! | GTATAGTAAGACATTATTTT+CGG | + | chr3_4:58493719-58493738 | None:intergenic | 20.0% |
| !!! | TTTTTGTAAAAGTTTCAGTT+AGG | - | chr3_4:58494340-58494359 | Msa0509890:CDS | 20.0% |
| !!! | TTTTGTAAAAGTTTCAGTTA+GGG | - | chr3_4:58494341-58494360 | Msa0509890:CDS | 20.0% |
| !!! | AATCTGAAATATTTTCTTGT+TGG | - | chr3_4:58494623-58494642 | Msa0509890:CDS | 20.0% |
| !! | CATAGTAATTTCAGTAAAAT+TGG | - | chr3_4:58494654-58494673 | Msa0509890:CDS | 20.0% |
| !! | TAAAATTGGAATGTTATCAT+TGG | - | chr3_4:58494668-58494687 | Msa0509890:CDS | 20.0% |
| !! | CTTATATTTATAAAAAGGAG+AGG | + | chr3_4:58494873-58494892 | None:intergenic | 20.0% |
| !!! | TTTTCTTTCTTATCCTTTAA+TGG | - | chr3_4:58495167-58495186 | Msa0509890:intron | 20.0% |
| !! | TGATAATCTACATATAGTTA+AGG | + | chr3_4:58495250-58495269 | None:intergenic | 20.0% |
| !!! | TTTCTCGATCATTTTATATA+TGG | + | chr3_4:58495284-58495303 | None:intergenic | 20.0% |
| !! | ACACATACATAAATAGAAAA+GGG | + | chr3_4:58495775-58495794 | None:intergenic | 20.0% |
| !!! | ATTTTAGCAAAAATCATGTA+AGG | - | chr3_4:58496230-58496249 | Msa0509890:CDS | 20.0% |
| !!! | TCACACAGAATTATATTTTT+AGG | - | chr3_4:58496373-58496392 | Msa0509890:CDS | 20.0% |
| !!! | CACACAGAATTATATTTTTA+GGG | - | chr3_4:58496374-58496393 | Msa0509890:CDS | 20.0% |
| !!! | ACACAGAATTATATTTTTAG+GGG | - | chr3_4:58496375-58496394 | Msa0509890:CDS | 20.0% |
| !! | TAATACTATTGATAAATTGC+TGG | + | chr3_4:58496978-58496997 | None:intergenic | 20.0% |
| !! | AAGTTAAATATGGTAAAGTA+TGG | - | chr3_4:58497427-58497446 | Msa0509890:five_prime_UTR | 20.0% |
| !! | TAAAATGTAAAACGGATAAA+AGG | + | chr3_4:58497621-58497640 | None:intergenic | 20.0% |
| !! | AGATTTAAACAATCAATGAA+AGG | - | chr3_4:58497647-58497666 | Msa0509890:five_prime_UTR | 20.0% |
| !! | GATTTAAACAATCAATGAAA+GGG | - | chr3_4:58497648-58497667 | Msa0509890:five_prime_UTR | 20.0% |
| ! | ACTGAAAATTTATATGTTGG+GGG | - | chr3_4:58492099-58492118 | Msa0509890:three_prime_UTR | 25.0% |
| !!! | TTTAATTAACGGGTTATATC+GGG | - | chr3_4:58492163-58492182 | Msa0509890:three_prime_UTR | 25.0% |
| !! | TTTCTTATCATAAGTGTTGT+CGG | - | chr3_4:58492639-58492658 | Msa0509890:intron | 25.0% |
| ! | ACATTGACACTTATGATAAA+AGG | + | chr3_4:58492694-58492713 | None:intergenic | 25.0% |
| !!! | TTTAGTTTTGGTTAATGCAT+TGG | - | chr3_4:58492988-58493007 | Msa0509890:CDS | 25.0% |
| ! | ACTTCATAAAATTGCATTTG+AGG | - | chr3_4:58493081-58493100 | Msa0509890:intron | 25.0% |
| ! | CTTCATAAAATTGCATTTGA+GGG | - | chr3_4:58493082-58493101 | Msa0509890:intron | 25.0% |
| ! | GGAACAAAAAATAAGTTAAG+TGG | + | chr3_4:58493698-58493717 | None:intergenic | 25.0% |
| !! | ATTTAAAACTATTTGACGGA+TGG | - | chr3_4:58494406-58494425 | Msa0509890:intron | 25.0% |
| !!! | TTCAGTTAAGTTAGTTTTGA+AGG | - | chr3_4:58494695-58494714 | Msa0509890:intron | 25.0% |
| !!! | TCAGTTAAGTTAGTTTTGAA+GGG | - | chr3_4:58494696-58494715 | Msa0509890:intron | 25.0% |
| !! | AAGATTATGATGTTCCTTTT+AGG | + | chr3_4:58494817-58494836 | None:intergenic | 25.0% |
| ! | AAAAAAGATTGGAATGCAAA+AGG | + | chr3_4:58495151-58495170 | None:intergenic | 25.0% |
| ! | GGATAAGAAAGAAAAAAGAT+TGG | + | chr3_4:58495162-58495181 | None:intergenic | 25.0% |
| ! | AAATCAATTTCCTTTGAACA+TGG | + | chr3_4:58495202-58495221 | None:intergenic | 25.0% |
| ! | TAATGAATAGATATACGGAT+TGG | - | chr3_4:58495589-58495608 | Msa0509890:intron | 25.0% |
| !!! | GATTGGTTTATATTCTACTT+TGG | - | chr3_4:58495606-58495625 | Msa0509890:intron | 25.0% |
| ! | CACACATACATAAATAGAAA+AGG | + | chr3_4:58495776-58495795 | None:intergenic | 25.0% |
| !!! | AAAAATCATGTAAGGTATTG+TGG | - | chr3_4:58496238-58496257 | Msa0509890:CDS | 25.0% |
| ! | AGATTAAATCCACAATGAAA+AGG | - | chr3_4:58496270-58496289 | Msa0509890:intron | 25.0% |
| !!! | CACAGAATTATATTTTTAGG+GGG | - | chr3_4:58496376-58496395 | Msa0509890:CDS | 25.0% |
| !!! | ACAGAATTATATTTTTAGGG+GGG | - | chr3_4:58496377-58496396 | Msa0509890:CDS | 25.0% |
| ! | TACTACAAGATGACTAAATT+GGG | + | chr3_4:58496464-58496483 | None:intergenic | 25.0% |
| ! | ATACTACAAGATGACTAAAT+TGG | + | chr3_4:58496465-58496484 | None:intergenic | 25.0% |
| !! | AATACATTGATGGTAAGTTT+CGG | + | chr3_4:58496533-58496552 | None:intergenic | 25.0% |
| ! | AAACTTCTCAAATACATTGA+TGG | + | chr3_4:58496543-58496562 | None:intergenic | 25.0% |
| !!! | AACTCTGTTTTGTTTACATA+CGG | + | chr3_4:58497002-58497021 | None:intergenic | 25.0% |
| !! | ATAACTCTTCTTTTTCTACT+AGG | + | chr3_4:58497073-58497092 | None:intergenic | 25.0% |
| ! | GAGTTTAATGATCTTGATAT+AGG | - | chr3_4:58497107-58497126 | Msa0509890:CDS | 25.0% |
| !!! | TTTTGATGACAATTTGTAAG+AGG | + | chr3_4:58497263-58497282 | None:intergenic | 25.0% |
| !! | ACTTTACCATATTTAACTTC+TGG | + | chr3_4:58497426-58497445 | None:intergenic | 25.0% |
| ! | AAATATGGTAAAGTATGGAT+TGG | - | chr3_4:58497432-58497451 | Msa0509890:five_prime_UTR | 25.0% |
| ! | TCATTATATAACATTAAGGC+TGG | + | chr3_4:58497512-58497531 | None:intergenic | 25.0% |
| ! | AAAAGGAACTATTCTCAAAT+GGG | + | chr3_4:58497604-58497623 | None:intergenic | 25.0% |
| ! | TAAAAGGAACTATTCTCAAA+TGG | + | chr3_4:58497605-58497624 | None:intergenic | 25.0% |
| TGTAATCACACTCATTCATA+TGG | - | chr3_4:58491959-58491978 | Msa0509890:three_prime_UTR | 30.0% | |
| ! | TATTCTGCGATTTTCTTCAA+GGG | + | chr3_4:58492080-58492099 | None:intergenic | 30.0% |
| GTTAAGCAGAATATGAGTTT+GGG | - | chr3_4:58492135-58492154 | Msa0509890:three_prime_UTR | 30.0% | |
| CATCATTCATTCTATAGCAT+TGG | + | chr3_4:58492449-58492468 | None:intergenic | 30.0% | |
| TTTGTGTTCCAACTCAAAAA+AGG | - | chr3_4:58492524-58492543 | Msa0509890:intron | 30.0% | |
| GACAACACTTATGATAAGAA+AGG | + | chr3_4:58492640-58492659 | None:intergenic | 30.0% | |
| ATCATAAGTGTCAATGTTAC+AGG | - | chr3_4:58492697-58492716 | Msa0509890:intron | 30.0% | |
| ! | GTGTAACAGATTTTCTCTTA+TGG | + | chr3_4:58492896-58492915 | None:intergenic | 30.0% |
| TTCTAACTTAAATAGCAGCA+TGG | + | chr3_4:58493016-58493035 | None:intergenic | 30.0% | |
| ! | TAGAAAGCTTTTTACAACCA+TGG | - | chr3_4:58493155-58493174 | Msa0509890:intron | 30.0% |
| AAGTTCATATCAATCATCCA+TGG | + | chr3_4:58493175-58493194 | None:intergenic | 30.0% | |
| TTGTACACTTAATACTGCAA+TGG | - | chr3_4:58493432-58493451 | Msa0509890:intron | 30.0% | |
| !!! | GATTGCAGAATTTTTTTCCA+AGG | - | chr3_4:58493475-58493494 | Msa0509890:intron | 30.0% |
| !! | TGATTGATAATGGAAACAAC+AGG | + | chr3_4:58493668-58493687 | None:intergenic | 30.0% |
| TTGTTTCCATTATCAATCAC+AGG | - | chr3_4:58493669-58493688 | Msa0509890:intron | 30.0% | |
| TCAAAAACCAACACTGAATT+GGG | + | chr3_4:58493790-58493809 | None:intergenic | 30.0% | |
| TTCAAAAACCAACACTGAAT+TGG | + | chr3_4:58493791-58493810 | None:intergenic | 30.0% | |
| !!! | AATTCAGTGTTGGTTTTTGA+AGG | - | chr3_4:58493790-58493809 | Msa0509890:intron | 30.0% |
| AACGAACTGAATATTGCAAA+TGG | + | chr3_4:58493902-58493921 | None:intergenic | 30.0% | |
| TATTCAGTTCGTTTGTTTAC+AGG | - | chr3_4:58493909-58493928 | Msa0509890:intron | 30.0% | |
| ATTCAGTTCGTTTGTTTACA+GGG | - | chr3_4:58493910-58493929 | Msa0509890:intron | 30.0% | |
| ATGGAAACTCAGCAAAATTT+AGG | - | chr3_4:58493959-58493978 | Msa0509890:intron | 30.0% | |
| CAAAATTTAGGCATAGTGTT+AGG | - | chr3_4:58493971-58493990 | Msa0509890:intron | 30.0% | |
| CCTACAATTACGAAACAATA+TGG | + | chr3_4:58494003-58494022 | None:intergenic | 30.0% | |
| CCATATTGTTTCGTAATTGT+AGG | - | chr3_4:58494000-58494019 | Msa0509890:intron | 30.0% | |
| ! | ATTTTCCATTGTGAATTCCA+GGG | - | chr3_4:58494023-58494042 | Msa0509890:intron | 30.0% |
| TTTCAAATTCAAAGAAACCC+TGG | + | chr3_4:58494043-58494062 | None:intergenic | 30.0% | |
| TTCTACATATCTACAAGCAT+AGG | - | chr3_4:58494086-58494105 | Msa0509890:intron | 30.0% | |
| ! | AGTTTTCCACAAATTTGTAG+AGG | + | chr3_4:58494263-58494282 | None:intergenic | 30.0% |
| TAGCATTTGTATGCCAATTT+CGG | - | chr3_4:58494291-58494310 | Msa0509890:intron | 30.0% | |
| AGCAAGTATTAAACTTGATG+TGG | + | chr3_4:58494460-58494479 | None:intergenic | 30.0% | |
| ATAAGTTATATAGAGACAGC+TGG | - | chr3_4:58494506-58494525 | Msa0509890:intron | 30.0% | |
| TGCAAAAATGAAACATGTGA+TGG | - | chr3_4:58494765-58494784 | Msa0509890:intron | 30.0% | |
| ! | GGAACATCATAATCTTTTAC+TGG | - | chr3_4:58494821-58494840 | Msa0509890:intron | 30.0% |
| GTTCTAGTCAGAAATGTTAA+AGG | + | chr3_4:58495094-58495113 | None:intergenic | 30.0% | |
| TTAACATTTCTGACTAGAAC+TGG | - | chr3_4:58495094-58495113 | Msa0509890:CDS | 30.0% | |
| ATGCAAAAGGAAAATTGTCA+AGG | + | chr3_4:58495138-58495157 | None:intergenic | 30.0% | |
| ! | TAGTTAAGGATTTGACTTCA+TGG | + | chr3_4:58495236-58495255 | None:intergenic | 30.0% |
| TTGCACTATACAAATCTCAA+AGG | + | chr3_4:58495486-58495505 | None:intergenic | 30.0% | |
| ATATCAAATGCGCTACTTAA+CGG | + | chr3_4:58495560-58495579 | None:intergenic | 30.0% | |
| ATGTGTAATGATGAAAACTG+AGG | + | chr3_4:58495656-58495675 | None:intergenic | 30.0% | |
| CATACATAAATAGAAAAGGG+TGG | + | chr3_4:58495772-58495791 | None:intergenic | 30.0% | |
| GTTTCAAATCGTTACATCAA+AGG | - | chr3_4:58495868-58495887 | Msa0509890:intron | 30.0% | |
| CATACTTTGATAGATTGGTA+TGG | + | chr3_4:58496042-58496061 | None:intergenic | 30.0% | |
| AATCCACAATGAAAAGGTTA+AGG | - | chr3_4:58496276-58496295 | Msa0509890:intron | 30.0% | |
| ! | TGATGTATTTGAAACGTTCT+GGG | + | chr3_4:58496328-58496347 | None:intergenic | 30.0% |
| !!! | CAGAATTATATTTTTAGGGG+GGG | - | chr3_4:58496378-58496397 | Msa0509890:CDS | 30.0% |
| ATACTTGTGGAAAACTTGAA+TGG | - | chr3_4:58496652-58496671 | Msa0509890:intron | 30.0% | |
| ! | CTACTAATAAAGCATCTATG+AGG | - | chr3_4:58496728-58496747 | Msa0509890:CDS | 30.0% |
| ACACACAAATGTAATATGCA+GGG | + | chr3_4:58496771-58496790 | None:intergenic | 30.0% | |
| TGATCTTGATATAGGTATCT+TGG | - | chr3_4:58497115-58497134 | Msa0509890:CDS | 30.0% | |
| AGCTATTAAATCATTGACCA+AGG | - | chr3_4:58497150-58497169 | Msa0509890:intron | 30.0% | |
| GATATACTAAGGATTACTCA+TGG | - | chr3_4:58497178-58497197 | Msa0509890:intron | 30.0% | |
| ATCAATAGTTCCTTCACTAA+TGG | + | chr3_4:58497214-58497233 | None:intergenic | 30.0% | |
| TCATCAAAAGAAGAGTAGAA+TGG | - | chr3_4:58497274-58497293 | Msa0509890:intron | 30.0% | |
| AATTTAAACTTTCCAGTAGC+AGG | - | chr3_4:58497555-58497574 | Msa0509890:five_prime_UTR | 30.0% | |
| AAAGGAACTATTCTCAAATG+GGG | + | chr3_4:58497603-58497622 | None:intergenic | 30.0% | |
| CTTGCAGCTAAAATGTAAAA+CGG | + | chr3_4:58497629-58497648 | None:intergenic | 30.0% | |
| CTACTACTATTGCTACTATC+TGG | + | chr3_4:58492023-58492042 | None:intergenic | 35.0% | |
| GTTCTTCAATTCATAACGTC+AGG | + | chr3_4:58492052-58492071 | None:intergenic | 35.0% | |
| CGTTATGAATTGAAGAACAG+AGG | - | chr3_4:58492054-58492073 | Msa0509890:three_prime_UTR | 35.0% | |
| ! | GTATTCTGCGATTTTCTTCA+AGG | + | chr3_4:58492081-58492100 | None:intergenic | 35.0% |
| GAAAATTTATATGTTGGGGG+CGG | - | chr3_4:58492102-58492121 | Msa0509890:three_prime_UTR | 35.0% | |
| ACTCATATTCTGCTTAACCT+CGG | + | chr3_4:58492133-58492152 | None:intergenic | 35.0% | |
| GGTTAAGCAGAATATGAGTT+TGG | - | chr3_4:58492134-58492153 | Msa0509890:three_prime_UTR | 35.0% | |
| ATAAAGGAAGGGAAAGAAAG+TGG | - | chr3_4:58492215-58492234 | Msa0509890:three_prime_UTR | 35.0% | |
| TCTTCACTTCACTCGTTTAT+CGG | + | chr3_4:58492246-58492265 | None:intergenic | 35.0% | |
| ATAAACGAGTGAAGTGAAGA+CGG | - | chr3_4:58492246-58492265 | Msa0509890:three_prime_UTR | 35.0% | |
| ! | TGAGTTGGAACACAAACATA+GGG | + | chr3_4:58492520-58492539 | None:intergenic | 35.0% |
| !! | TTGAGTTGGAACACAAACAT+AGG | + | chr3_4:58492521-58492540 | None:intergenic | 35.0% |
| ! | TGTCAAGTTGTTTGGTATTG+CGG | - | chr3_4:58492592-58492611 | Msa0509890:intron | 35.0% |
| AAAGGATACAAAACCTGACA+TGG | + | chr3_4:58492622-58492641 | None:intergenic | 35.0% | |
| ! | GTAACAATGATAGAAGCACA+AGG | - | chr3_4:58492724-58492743 | Msa0509890:intron | 35.0% |
| ATGATATTCAGAAATCGGAG+TGG | - | chr3_4:58492826-58492845 | Msa0509890:intron | 35.0% | |
| AATCTGTTACACCATCCATA+CGG | - | chr3_4:58492904-58492923 | Msa0509890:intron | 35.0% | |
| TGCTCAAACTTTATCTTCGA+AGG | - | chr3_4:58492931-58492950 | Msa0509890:intron | 35.0% | |
| AAGGAAATTGCAAGATGACA+AGG | - | chr3_4:58492950-58492969 | Msa0509890:intron | 35.0% | |
| TATGGACAACTACAAGTTAG+TGG | - | chr3_4:58493254-58493273 | Msa0509890:intron | 35.0% | |
| CACCACATACATGTTGAAAA+CGG | + | chr3_4:58493326-58493345 | None:intergenic | 35.0% | |
| ! | AGATTGGAAGCATAAAACCT+TGG | + | chr3_4:58493495-58493514 | None:intergenic | 35.0% |
| TCTTAACTCACTGTCACAAA+TGG | + | chr3_4:58493624-58493643 | None:intergenic | 35.0% | |
| TGGTTACCTGTGATTGATAA+TGG | + | chr3_4:58493678-58493697 | None:intergenic | 35.0% | |
| !!! | AGTGTTGGTTTTTGAAGGAA+GGG | - | chr3_4:58493795-58493814 | Msa0509890:intron | 35.0% |
| ! | GATTTTCCATTGTGAATTCC+AGG | - | chr3_4:58494022-58494041 | Msa0509890:intron | 35.0% |
| AAGATATCTCCACTTTGAAC+TGG | - | chr3_4:58494161-58494180 | Msa0509890:intron | 35.0% | |
| AGATATCTCCACTTTGAACT+GGG | - | chr3_4:58494162-58494181 | Msa0509890:intron | 35.0% | |
| TTCCACTTATATCCTCAAAG+AGG | + | chr3_4:58494214-58494233 | None:intergenic | 35.0% | |
| ATTCTGCCTCTACAAATTTG+TGG | - | chr3_4:58494254-58494273 | Msa0509890:intron | 35.0% | |
| TGACAACTATCATCACCTAT+TGG | + | chr3_4:58494379-58494398 | None:intergenic | 35.0% | |
| !! | AAGTACCACTTTAGAACAGA+GGG | + | chr3_4:58494591-58494610 | None:intergenic | 35.0% |
| !! | TAAGTACCACTTTAGAACAG+AGG | + | chr3_4:58494592-58494611 | None:intergenic | 35.0% |
| CGAGAAAATGCAATTCTAGA+AGG | - | chr3_4:58494735-58494754 | Msa0509890:intron | 35.0% | |
| ! | TTTAGGTTATACCAGTTGTG+CGG | + | chr3_4:58494800-58494819 | None:intergenic | 35.0% |
| CACAACTGGTATAACCTAAA+AGG | - | chr3_4:58494800-58494819 | Msa0509890:intron | 35.0% | |
| !! | CTATGAGTTTTGTAGTCTGA+TGG | - | chr3_4:58494844-58494863 | Msa0509890:intron | 35.0% |
| !! | AAAAGAGTGTCAGTAACACT+TGG | + | chr3_4:58494928-58494947 | None:intergenic | 35.0% |
| CATTTCAATGCCAAGAATGT+GGG | - | chr3_4:58494976-58494995 | Msa0509890:intron | 35.0% | |
| TTTCCTTTGAACATGGATCA+AGG | + | chr3_4:58495195-58495214 | None:intergenic | 35.0% | |
| GCATCAAATTGATCGAGAAA+GGG | + | chr3_4:58495327-58495346 | None:intergenic | 35.0% | |
| TGCATCAAATTGATCGAGAA+AGG | + | chr3_4:58495328-58495347 | None:intergenic | 35.0% | |
| ATAGTAGATAGAGAACTGCA+AGG | + | chr3_4:58495383-58495402 | None:intergenic | 35.0% | |
| TAGGTAAAACATGCATGCAA+AGG | + | chr3_4:58495455-58495474 | None:intergenic | 35.0% | |
| AATCTCAAAGGAGTTGTACT+AGG | + | chr3_4:58495474-58495493 | None:intergenic | 35.0% | |
| CTACTTAACGGCAAAAGATT+TGG | + | chr3_4:58495548-58495567 | None:intergenic | 35.0% | |
| GAAAACTGAGGAAATATGAC+CGG | + | chr3_4:58495644-58495663 | None:intergenic | 35.0% | |
| GACTGCAAAGGTAAAATATC+AGG | + | chr3_4:58495969-58495988 | None:intergenic | 35.0% | |
| AGCTTCATTAATGACTGCAA+AGG | + | chr3_4:58495981-58496000 | None:intergenic | 35.0% | |
| TTTGCAGTCATTAATGAAGC+TGG | - | chr3_4:58495980-58495999 | Msa0509890:CDS | 35.0% | |
| CATTAATGAAGCTGGAGTAT+TGG | - | chr3_4:58495988-58496007 | Msa0509890:CDS | 35.0% | |
| GATGGCATACTTTGATAGAT+TGG | + | chr3_4:58496047-58496066 | None:intergenic | 35.0% | |
| TTGAGTATAGAAGTTTGCGA+TGG | + | chr3_4:58496065-58496084 | None:intergenic | 35.0% | |
| !!! | TTGCTAGTTTTGCTTTTTCC+TGG | - | chr3_4:58496181-58496200 | Msa0509890:CDS | 35.0% |
| !! | TTCATTTTTCTAATGCGACC+AGG | + | chr3_4:58496202-58496221 | None:intergenic | 35.0% |
| !! | AATCATGTAAGGTATTGTGG+AGG | - | chr3_4:58496241-58496260 | Msa0509890:CDS | 35.0% |
| ! | CAACCTTAACCTTTTCATTG+TGG | + | chr3_4:58496282-58496301 | None:intergenic | 35.0% |
| AAAGGTTAAGGTTGCAAGTT+AGG | - | chr3_4:58496288-58496307 | Msa0509890:intron | 35.0% | |
| ! | CTGATGTATTTGAAACGTTC+TGG | + | chr3_4:58496329-58496348 | None:intergenic | 35.0% |
| CACAATGAATAGCTATTCAG+AGG | + | chr3_4:58496501-58496520 | None:intergenic | 35.0% | |
| ! | TGGATGTTTTACTTCATTGC+AGG | - | chr3_4:58496588-58496607 | Msa0509890:intron | 35.0% |
| AATATTGCAAGCCAAGCAAA+GGG | + | chr3_4:58496632-58496651 | None:intergenic | 35.0% | |
| TAATATTGCAAGCCAAGCAA+AGG | + | chr3_4:58496633-58496652 | None:intergenic | 35.0% | |
| GGCTTGCAATATTATACTTG+TGG | - | chr3_4:58496639-58496658 | Msa0509890:intron | 35.0% | |
| CACACAAATGTAATATGCAG+GGG | + | chr3_4:58496770-58496789 | None:intergenic | 35.0% | |
| CACACACAAATGTAATATGC+AGG | + | chr3_4:58496772-58496791 | None:intergenic | 35.0% | |
| ACATGCATCACATTCAAACA+AGG | - | chr3_4:58496814-58496833 | Msa0509890:intron | 35.0% | |
| ! | CTTTTTCTACTAGGTGACAT+TGG | + | chr3_4:58497064-58497083 | None:intergenic | 35.0% |
| TACAAAGACTCCATTAGTGA+AGG | - | chr3_4:58497201-58497220 | Msa0509890:intron | 35.0% | |
| !! | GAAGGAACTATTGATGATGT+TGG | - | chr3_4:58497219-58497238 | Msa0509890:intron | 35.0% |
| TCAAAAGAAGAGTAGAATGG+CGG | - | chr3_4:58497277-58497296 | Msa0509890:intron | 35.0% | |
| ATGATTGCACTTGTTTACTC+TGG | - | chr3_4:58497381-58497400 | Msa0509890:exon | 35.0% | |
| ! | ACTCTGGAAATTTGCTTAGA+TGG | - | chr3_4:58497397-58497416 | Msa0509890:five_prime_UTR | 35.0% |
| TGGTCTCCAGAAGTTAAATA+TGG | - | chr3_4:58497417-58497436 | Msa0509890:five_prime_UTR | 35.0% | |
| CTCATATTCTGCTTAACCTC+GGG | + | chr3_4:58492132-58492151 | None:intergenic | 40.0% | |
| !! | ATTAACGGGTTATATCGGGT+CGG | - | chr3_4:58492167-58492186 | Msa0509890:three_prime_UTR | 40.0% |
| AGTTTCCACCATCTCAGAAA+AGG | - | chr3_4:58492312-58492331 | Msa0509890:three_prime_UTR | 40.0% | |
| GTTTCCACCATCTCAGAAAA+GGG | - | chr3_4:58492313-58492332 | Msa0509890:three_prime_UTR | 40.0% | |
| ACTACTAAAGATTTCCACCC+AGG | - | chr3_4:58492349-58492368 | Msa0509890:three_prime_UTR | 40.0% | |
| !! | TTACTTTGGTGTTGCATTGC+AGG | - | chr3_4:58492472-58492491 | Msa0509890:CDS | 40.0% |
| !! | TACTTTGGTGTTGCATTGCA+GGG | - | chr3_4:58492473-58492492 | Msa0509890:CDS | 40.0% |
| !!! | CCATCACACCTTTTTTGAGT+TGG | + | chr3_4:58492535-58492554 | None:intergenic | 40.0% |
| ! | CCAACTCAAAAAAGGTGTGA+TGG | - | chr3_4:58492532-58492551 | Msa0509890:intron | 40.0% |
| TTGAATGTCAAGCACTCTCA+AGG | - | chr3_4:58492862-58492881 | Msa0509890:intron | 40.0% | |
| AAGTTTGAGCATCAACCGTA+TGG | + | chr3_4:58492922-58492941 | None:intergenic | 40.0% | |
| ! | CTCCGTTTTCAACATGTATG+TGG | - | chr3_4:58493321-58493340 | Msa0509890:intron | 40.0% |
| TGATGTCAGACATGTCTTGA+TGG | + | chr3_4:58493373-58493392 | None:intergenic | 40.0% | |
| AGACATGTCTGACATCAAAG+AGG | - | chr3_4:58493376-58493395 | Msa0509890:intron | 40.0% | |
| AAACCAACACTGAATTGGGT+AGG | + | chr3_4:58493786-58493805 | None:intergenic | 40.0% | |
| !!! | CAGTGTTGGTTTTTGAAGGA+AGG | - | chr3_4:58493794-58493813 | Msa0509890:intron | 40.0% |
| !! | TTTTGAAGGAAGGGTAGCAT+CGG | - | chr3_4:58493804-58493823 | Msa0509890:intron | 40.0% |
| ATAGATACCTCAGTCCCTTT+AGG | + | chr3_4:58493850-58493869 | None:intergenic | 40.0% | |
| AGAAACCCTGGAATTCACAA+TGG | + | chr3_4:58494031-58494050 | None:intergenic | 40.0% | |
| ! | GACCTCTTTGAGGATATAAG+TGG | - | chr3_4:58494209-58494228 | Msa0509890:intron | 40.0% |
| ! | AAGTTGCAACTGCCTAGTTT+TGG | + | chr3_4:58494317-58494336 | None:intergenic | 40.0% |
| GGGTACATCTCATATCCAAT+AGG | - | chr3_4:58494361-58494380 | Msa0509890:CDS | 40.0% | |
| !! | AGTACCACTTTAGAACAGAG+GGG | + | chr3_4:58494590-58494609 | None:intergenic | 40.0% |
| GCATTTCAATGCCAAGAATG+TGG | - | chr3_4:58494975-58494994 | Msa0509890:intron | 40.0% | |
| CTCTTACTAACCCACATTCT+TGG | + | chr3_4:58494989-58495008 | None:intergenic | 40.0% | |
| !! | ATGTGGGTTAGTAAGAGACA+AGG | - | chr3_4:58494992-58495011 | Msa0509890:intron | 40.0% |
| ATGGATCAAGGCTCCATTAA+AGG | + | chr3_4:58495183-58495202 | None:intergenic | 40.0% | |
| CAATTTGATGCAAACACGAG+AGG | - | chr3_4:58495336-58495355 | Msa0509890:intron | 40.0% | |
| TACCAACGGAATCAATGCTA+CGG | + | chr3_4:58496110-58496129 | None:intergenic | 40.0% | |
| GCAACAACTGAAACTACCAA+CGG | + | chr3_4:58496124-58496143 | None:intergenic | 40.0% | |
| ACAAACAGATGGAGGAATGA+TGG | - | chr3_4:58496405-58496424 | Msa0509890:CDS | 40.0% | |
| CAAACAGATGGAGGAATGAT+GGG | - | chr3_4:58496406-58496425 | Msa0509890:intron | 40.0% | |
| CCATCACAACTAGCTAAGAA+AGG | + | chr3_4:58496886-58496905 | None:intergenic | 40.0% | |
| CCTTTCTTAGCTAGTTGTGA+TGG | - | chr3_4:58496883-58496902 | Msa0509890:intron | 40.0% | |
| ! | ACTAGGTGACATTGGTTACA+TGG | + | chr3_4:58497056-58497075 | None:intergenic | 40.0% |
| TATAGGTATCTTGGAGACAC+AGG | - | chr3_4:58497124-58497143 | Msa0509890:CDS | 40.0% | |
| ATAGGTATCTTGGAGACACA+GGG | - | chr3_4:58497125-58497144 | Msa0509890:CDS | 40.0% | |
| TAAATCATTGACCAAGGCAG+TGG | - | chr3_4:58497156-58497175 | Msa0509890:intron | 40.0% | |
| !! | GGAACTATTGATGATGTTGG+AGG | - | chr3_4:58497222-58497241 | Msa0509890:intron | 40.0% |
| ATTTGTAAGAGGCTTCTGCA+CGG | + | chr3_4:58497252-58497271 | None:intergenic | 40.0% | |
| CAAAAGAAGAGTAGAATGGC+GGG | - | chr3_4:58497278-58497297 | Msa0509890:intron | 40.0% | |
| !!! | CCTTTTGTTTTTCCTGCTAC+TGG | + | chr3_4:58497570-58497589 | None:intergenic | 40.0% |
| CCAGTAGCAGGAAAAACAAA+AGG | - | chr3_4:58497567-58497586 | Msa0509890:five_prime_UTR | 40.0% | |
| GAGTGAAGTGAAGACGGAAA+TGG | - | chr3_4:58492252-58492271 | Msa0509890:three_prime_UTR | 45.0% | |
| TGAAGTGAAGACGGAAATGG+AGG | - | chr3_4:58492255-58492274 | Msa0509890:three_prime_UTR | 45.0% | |
| !! | ACTTTGGTGTTGCATTGCAG+GGG | - | chr3_4:58492474-58492493 | Msa0509890:CDS | 45.0% |
| GAACACAAACATAGGGCTCT+TGG | + | chr3_4:58492513-58492532 | None:intergenic | 45.0% | |
| ! | GACAACGTGAGCATTTGCTA+AGG | + | chr3_4:58492576-58492595 | None:intergenic | 45.0% |
| ! | GCTCACGTTGTCAAGTTGTT+TGG | - | chr3_4:58492584-58492603 | Msa0509890:intron | 45.0% |
| ! | GATAGAAGCACAAGGAGTGT+TGG | - | chr3_4:58492732-58492751 | Msa0509890:intron | 45.0% |
| TTGAGCATCAACCGTATGGA+TGG | + | chr3_4:58492918-58492937 | None:intergenic | 45.0% | |
| ! | GATCATTCCAAGCACTGCTA+TGG | - | chr3_4:58493236-58493255 | Msa0509890:intron | 45.0% |
| TAGTTGTCCATAGCAGTGCT+TGG | + | chr3_4:58493246-58493265 | None:intergenic | 45.0% | |
| GGACAACTACAAGTTAGTGG+AGG | - | chr3_4:58493257-58493276 | Msa0509890:intron | 45.0% | |
| !! | CAAGTTAGTGGAGGCATTAG+TGG | - | chr3_4:58493266-58493285 | Msa0509890:intron | 45.0% |
| TGACAGTGAGTTAAGACCTC+TGG | - | chr3_4:58493628-58493647 | Msa0509890:CDS | 45.0% | |
| GACAGTGAGTTAAGACCTCT+GGG | - | chr3_4:58493629-58493648 | Msa0509890:CDS | 45.0% | |
| GAATTGGGTAGGCAGCTATA+TGG | + | chr3_4:58493775-58493794 | None:intergenic | 45.0% | |
| CTGTGCAACATGTGCCTAAA+GGG | - | chr3_4:58493833-58493852 | Msa0509890:intron | 45.0% | |
| AAAGAGGTCCCAGTTCAAAG+TGG | + | chr3_4:58494173-58494192 | None:intergenic | 45.0% | |
| ACTTTGAACTGGGACCTCTT+TGG | - | chr3_4:58494172-58494191 | Msa0509890:intron | 45.0% | |
| CTTTGAACTGGGACCTCTTT+GGG | - | chr3_4:58494173-58494192 | Msa0509890:intron | 45.0% | |
| TTTGAACTGGGACCTCTTTG+GGG | - | chr3_4:58494174-58494193 | Msa0509890:intron | 45.0% | |
| ATTATAGCCGTTCCCCAAAG+AGG | + | chr3_4:58494189-58494208 | None:intergenic | 45.0% | |
| CGGCTATAATGACCTCTTTG+AGG | - | chr3_4:58494199-58494218 | Msa0509890:intron | 45.0% | |
| AGTGGAAGTCGAACTACTAG+AGG | - | chr3_4:58494227-58494246 | Msa0509890:intron | 45.0% | |
| TGCCAATTTCGGCCAAAACT+AGG | - | chr3_4:58494302-58494321 | Msa0509890:CDS | 45.0% | |
| !!! | TGCCTAGTTTTGGCCGAAAT+TGG | + | chr3_4:58494307-58494326 | None:intergenic | 45.0% |
| ! | AAGCACTGTGACTCGACAAA+AGG | - | chr3_4:58494529-58494548 | Msa0509890:intron | 45.0% |
| GGGGACAAACACAAGTGAAT+AGG | + | chr3_4:58494571-58494590 | None:intergenic | 45.0% | |
| !! | TTGTCCCCTCTGTTCTAAAG+TGG | - | chr3_4:58494583-58494602 | Msa0509890:CDS | 45.0% |
| ! | AGAGTGTCAGTAACACTTGG+TGG | + | chr3_4:58494925-58494944 | None:intergenic | 45.0% |
| GCTTCTAAGCCTTCTTCTAG+TGG | - | chr3_4:58495062-58495081 | Msa0509890:CDS | 45.0% | |
| AGGATACTGCCACTAGAAGA+AGG | + | chr3_4:58495074-58495093 | None:intergenic | 45.0% | |
| GAGCCTTGATCCATGTTCAA+AGG | - | chr3_4:58495189-58495208 | Msa0509890:intron | 45.0% | |
| ! | AACACGAGAGGCGATTTTGA+AGG | - | chr3_4:58495348-58495367 | Msa0509890:intron | 45.0% |
| ACTTTGGATGATCCTGCAAC+CGG | - | chr3_4:58495622-58495641 | Msa0509890:intron | 45.0% | |
| TATCCCCAGTACAGTGAGTT+TGG | - | chr3_4:58495739-58495758 | Msa0509890:intron | 45.0% | |
| ATGCCAAACTCACTGTACTG+GGG | + | chr3_4:58495745-58495764 | None:intergenic | 45.0% | |
| GATGCCAAACTCACTGTACT+GGG | + | chr3_4:58495746-58495765 | None:intergenic | 45.0% | |
| AGATGCCAAACTCACTGTAC+TGG | + | chr3_4:58495747-58495766 | None:intergenic | 45.0% | |
| ! | ATCGTTACATCAAAGGCACG+TGG | - | chr3_4:58495875-58495894 | Msa0509890:intron | 45.0% |
| !! | TTCCGTAGCATTGATTCCGT+TGG | - | chr3_4:58496105-58496124 | Msa0509890:intron | 45.0% |
| !! | GAGGAATGATGGGCAATGAT+GGG | - | chr3_4:58496416-58496435 | Msa0509890:intron | 45.0% |
| ATGATGCTGACATGCAATGC+TGG | - | chr3_4:58496568-58496587 | Msa0509890:intron | 45.0% | |
| CCTTAGTATATCCACTGCCT+TGG | + | chr3_4:58497170-58497189 | None:intergenic | 45.0% | |
| CCAAGGCAGTGGATATACTA+AGG | - | chr3_4:58497167-58497186 | Msa0509890:intron | 45.0% | |
| TTTGTAAGAGGCTTCTGCAC+GGG | + | chr3_4:58497251-58497270 | None:intergenic | 45.0% | |
| ACCAGAAGCAGCTGTGATAT+CGG | + | chr3_4:58497313-58497332 | None:intergenic | 45.0% | |
| TTCTGGTACAAACAAGCCAC+TGG | - | chr3_4:58497326-58497345 | Msa0509890:CDS | 45.0% | |
| ! | CATTAAGGCTGGCTGATGAA+GGG | + | chr3_4:58497501-58497520 | None:intergenic | 45.0% |
| ! | ACATTAAGGCTGGCTGATGA+AGG | + | chr3_4:58497502-58497521 | None:intergenic | 45.0% |
| !!! | TTTATTTATTTTATATTACT+CGG | + | chr3_4:58492200-58492219 | None:intergenic | 5.0% |
| !!! | CTATTTTATATAATTTTTTA+AGG | - | chr3_4:58494478-58494497 | Msa0509890:intron | 5.0% |
| !! | GATAAAAAAAATAAAATAAA+TGG | - | chr3_4:58494898-58494917 | Msa0509890:CDS | 5.0% |
| !! | AGAGCGACCCTTTTCTGAGA+TGG | + | chr3_4:58492323-58492342 | None:intergenic | 50.0% |
| AGAGAGAGAGAGAGTGACCT+GGG | + | chr3_4:58492369-58492388 | None:intergenic | 50.0% | |
| GTATTGCGGAACACCATGTC+AGG | - | chr3_4:58492606-58492625 | Msa0509890:intron | 50.0% | |
| GTCTTGTGTCCGACACATGT+TGG | + | chr3_4:58492668-58492687 | None:intergenic | 50.0% | |
| TGACATCAAAGAGGAGCAGC+TGG | - | chr3_4:58493385-58493404 | Msa0509890:intron | 50.0% | |
| !! | GCTGGTGTTGTATGCACAGA+TGG | - | chr3_4:58493403-58493422 | Msa0509890:intron | 50.0% |
| GCGCATTACATGCAAACTGC+AGG | + | chr3_4:58493598-58493617 | None:intergenic | 50.0% | |
| ! | GAGTTAAGACCTCTGGGAAC+AGG | - | chr3_4:58493635-58493654 | Msa0509890:CDS | 50.0% |
| GGATACAATCCTGTTCCCAG+AGG | + | chr3_4:58493647-58493666 | None:intergenic | 50.0% | |
| CTGCCTACCCAATTCAGTGT+TGG | - | chr3_4:58493780-58493799 | Msa0509890:intron | 50.0% | |
| GCTGTGCAACATGTGCCTAA+AGG | - | chr3_4:58493832-58493851 | Msa0509890:intron | 50.0% | |
| ACATGTGCCTAAAGGGACTG+AGG | - | chr3_4:58493840-58493859 | Msa0509890:intron | 50.0% | |
| GAGGAAATATGACCGGTTGC+AGG | + | chr3_4:58495637-58495656 | None:intergenic | 50.0% | |
| GGGGAAGAACAAACAGATGG+AGG | - | chr3_4:58496397-58496416 | Msa0509890:CDS | 50.0% | |
| !! | GGAGGAATGATGGGCAATGA+TGG | - | chr3_4:58496415-58496434 | Msa0509890:intron | 50.0% |
| ACCGATATCACAGCTGCTTC+TGG | - | chr3_4:58497309-58497328 | Msa0509890:CDS | 50.0% | |
| TACAAACAAGCCACTGGAGC+TGG | - | chr3_4:58497332-58497351 | Msa0509890:CDS | 50.0% | |
| ATTCTGTGATCCAGCTCCAG+TGG | + | chr3_4:58497345-58497364 | None:intergenic | 50.0% | |
| !!! | GCGACCCTTTTCTGAGATGG+TGG | + | chr3_4:58492320-58492339 | None:intergenic | 55.0% |
| GAGAGAGAGAGAGAGTGACC+TGG | + | chr3_4:58492370-58492389 | None:intergenic | 55.0% | |
| TGTCGGCGTCCAACATGTGT+CGG | - | chr3_4:58492656-58492675 | Msa0509890:intron | 55.0% | |
| ! | ACTGGGACCTCTTTGGGGAA+CGG | - | chr3_4:58494179-58494198 | Msa0509890:intron | 55.0% |
| GGTTTCTTGCTCCGCACAAC+TGG | - | chr3_4:58494786-58494805 | Msa0509890:intron | 55.0% | |
| GGGGGGGAAGAACAAACAGA+TGG | - | chr3_4:58496394-58496413 | Msa0509890:CDS | 55.0% | |
| CCAAGCAAAGGGTGAACAGC+TGG | + | chr3_4:58496621-58496640 | None:intergenic | 55.0% | |
| CCAGCTGTTCACCCTTTGCT+TGG | - | chr3_4:58496618-58496637 | Msa0509890:intron | 55.0% | |
| GAGAGAGAGAGTGACCTGGG+TGG | + | chr3_4:58492366-58492385 | None:intergenic | 60.0% | |
| TGTTGGGGGCGGATGACCCG+AGG | - | chr3_4:58492113-58492132 | Msa0509890:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 58491932 | 58497729 | 58491932 | ID=Msa0509890;Name=Msa0509890 |
| chr3_4 | mRNA | 58491932 | 58497729 | 58491932 | ID=Msa0509890-mRNA-1;Parent=Msa0509890;Name=Msa0509890-mRNA-1;_AED=0.16;_eAED=0.16;_QI=339|0.92|0.92|1|0.76|0.85|14|438|467 |
| chr3_4 | exon | 58491932 | 58492532 | 58491932 | ID=Msa0509890-mRNA-1:exon:13610;Parent=Msa0509890-mRNA-1 |
| chr3_4 | exon | 58492988 | 58493051 | 58492988 | ID=Msa0509890-mRNA-1:exon:13609;Parent=Msa0509890-mRNA-1 |
| chr3_4 | exon | 58493605 | 58493674 | 58493605 | ID=Msa0509890-mRNA-1:exon:13608;Parent=Msa0509890-mRNA-1 |
| chr3_4 | exon | 58494292 | 58494398 | 58494292 | ID=Msa0509890-mRNA-1:exon:13607;Parent=Msa0509890-mRNA-1 |
| chr3_4 | exon | 58494575 | 58494694 | 58494575 | ID=Msa0509890-mRNA-1:exon:13606;Parent=Msa0509890-mRNA-1 |
| chr3_4 | exon | 58494854 | 58494944 | 58494854 | ID=Msa0509890-mRNA-1:exon:13605;Parent=Msa0509890-mRNA-1 |
| chr3_4 | exon | 58495057 | 58495161 | 58495057 | ID=Msa0509890-mRNA-1:exon:13604;Parent=Msa0509890-mRNA-1 |
| chr3_4 | exon | 58495800 | 58495881 | 58495800 | ID=Msa0509890-mRNA-1:exon:13603;Parent=Msa0509890-mRNA-1 |
| chr3_4 | exon | 58495971 | 58496059 | 58495971 | ID=Msa0509890-mRNA-1:exon:13602;Parent=Msa0509890-mRNA-1 |
| chr3_4 | exon | 58496165 | 58496283 | 58496165 | ID=Msa0509890-mRNA-1:exon:13601;Parent=Msa0509890-mRNA-1 |
| chr3_4 | exon | 58496370 | 58496424 | 58496370 | ID=Msa0509890-mRNA-1:exon:13600;Parent=Msa0509890-mRNA-1 |
| chr3_4 | exon | 58496690 | 58496824 | 58496690 | ID=Msa0509890-mRNA-1:exon:13599;Parent=Msa0509890-mRNA-1 |
| chr3_4 | exon | 58497064 | 58497167 | 58497064 | ID=Msa0509890-mRNA-1:exon:13598;Parent=Msa0509890-mRNA-1 |
| chr3_4 | exon | 58497291 | 58497729 | 58497291 | ID=Msa0509890-mRNA-1:exon:13597;Parent=Msa0509890-mRNA-1 |
| chr3_4 | five_prime_UTR | 58497391 | 58497729 | 58497391 | ID=Msa0509890-mRNA-1:five_prime_utr;Parent=Msa0509890-mRNA-1 |
| chr3_4 | CDS | 58497291 | 58497390 | 58497291 | ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1 |
| chr3_4 | CDS | 58497064 | 58497167 | 58497064 | ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1 |
| chr3_4 | CDS | 58496690 | 58496824 | 58496690 | ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1 |
| chr3_4 | CDS | 58496370 | 58496424 | 58496370 | ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1 |
| chr3_4 | CDS | 58496165 | 58496283 | 58496165 | ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1 |
| chr3_4 | CDS | 58495971 | 58496059 | 58495971 | ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1 |
| chr3_4 | CDS | 58495800 | 58495881 | 58495800 | ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1 |
| chr3_4 | CDS | 58495057 | 58495161 | 58495057 | ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1 |
| chr3_4 | CDS | 58494854 | 58494944 | 58494854 | ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1 |
| chr3_4 | CDS | 58494575 | 58494694 | 58494575 | ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1 |
| chr3_4 | CDS | 58494292 | 58494398 | 58494292 | ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1 |
| chr3_4 | CDS | 58493605 | 58493674 | 58493605 | ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1 |
| chr3_4 | CDS | 58492988 | 58493051 | 58492988 | ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1 |
| chr3_4 | CDS | 58492370 | 58492532 | 58492370 | ID=Msa0509890-mRNA-1:cds;Parent=Msa0509890-mRNA-1 |
| chr3_4 | three_prime_UTR | 58491932 | 58492369 | 58491932 | ID=Msa0509890-mRNA-1:three_prime_utr;Parent=Msa0509890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
