AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0417620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417620 MtrunA17_Chr3g0115111 98.501 734 8 2 1 733 1 732 0.0 1489
Msa0417620 MtrunA17_Chr5g0424301 74.555 731 148 8 14 732 28 732 0.0 1093
Msa0417620 MtrunA17_Chr3g0131001 61.096 748 233 11 1 733 1 705 0.0 862
Msa0417620 MtrunA17_Chr8g0385201 59.661 709 221 11 37 733 12 667 0.0 826
Msa0417620 MtrunA17_Chr3g0082501 52.835 723 279 11 51 732 59 760 0.0 693
Msa0417620 MtrunA17_Chr8g0353121 50.813 738 303 12 36 732 32 750 0.0 684
Msa0417620 MtrunA17_Chr1g0171491 49.202 752 298 11 51 732 56 793 0.0 662
Msa0417620 MtrunA17_Chr1g0180261 41.775 845 338 18 14 732 2 818 0.0 571
Msa0417620 MtrunA17_Chr8g0380791 38.825 783 366 18 44 731 1 765 1.44e-173 516
Msa0417620 MtrunA17_Chr7g0256301 60.766 418 137 8 320 732 396 791 5.52e-167 500
Msa0417620 MtrunA17_Chr7g0256301 54.271 199 89 2 50 248 65 261 1.52e-62 224
Msa0417620 MtrunA17_Chr4g0059911 36.441 236 133 6 43 272 40 264 2.98e-33 132
Msa0417620 MtrunA17_Chr4g0059911 39.583 192 112 3 58 246 11 201 8.44e-32 127
Msa0417620 MtrunA17_Chr8g0377671 33.202 253 120 4 43 247 7 258 1.04e-31 125
Msa0417620 MtrunA17_Chr8g0377671 32.143 196 130 2 22 215 76 270 1.35e-25 107
Msa0417620 MtrunA17_Chr2g0316611 36.190 210 131 2 40 247 20 228 7.57e-31 125
Msa0417620 MtrunA17_Chr2g0316611 36.406 217 133 3 35 247 151 366 7.32e-29 119
Msa0417620 MtrunA17_Chr2g0316611 34.673 199 125 2 33 227 78 275 3.51e-24 105
Msa0417620 MtrunA17_Chr2g0316611 39.216 153 88 2 32 180 215 366 2.32e-21 96.7
Msa0417620 MtrunA17_Chr8g0382971 38.372 172 105 1 56 227 25 195 9.72e-31 124
Msa0417620 MtrunA17_Chr8g0382971 34.804 204 128 3 48 247 61 263 1.05e-27 115
Msa0417620 MtrunA17_Chr8g0382971 36.913 149 91 1 105 253 27 172 6.11e-22 98.2
Msa0417620 MtrunA17_Chr8g0382971 37.278 169 101 2 56 220 117 284 1.28e-21 97.1
Msa0417620 MtrunA17_Chr6g0467061 39.106 179 108 1 49 227 12 189 8.01e-30 120
Msa0417620 MtrunA17_Chr6g0467061 32.653 245 135 5 32 247 60 303 1.80e-27 114
Msa0417620 MtrunA17_Chr6g0467061 37.791 172 106 1 56 227 157 327 3.10e-23 101
Msa0417620 MtrunA17_Chr6g0467061 38.129 139 81 2 32 166 198 335 1.57e-15 78.6
Msa0417620 MtrunA17_Chr2g0316631 35.849 212 133 2 40 249 20 230 2.08e-29 119
Msa0417620 MtrunA17_Chr2g0316631 36.683 199 121 3 33 227 78 275 1.78e-28 116
Msa0417620 MtrunA17_Chr2g0316631 31.818 176 92 4 33 204 147 298 4.28e-17 82.8
Msa0417620 MtrunA17_Chr8g0377191 36.181 199 103 2 52 227 8 205 4.21e-29 115
Msa0417620 MtrunA17_Chr8g0377191 35.570 149 96 0 81 229 13 161 1.66e-19 87.4
Msa0417620 MtrunA17_Chr8g0377191 33.108 148 97 1 101 246 10 157 4.51e-17 80.5
Msa0417620 MtrunA17_Chr4g0055371 36.416 173 109 1 57 229 173 344 7.48e-27 114
Msa0417620 MtrunA17_Chr4g0055371 37.931 116 72 0 72 187 233 348 3.37e-18 87.8
Msa0417620 MtrunA17_Chr4g0055371 33.333 126 84 0 102 227 171 296 8.17e-15 77.4
Msa0417620 MtrunA17_Chr7g0233351 34.673 199 127 2 57 255 193 388 9.05e-27 114
Msa0417620 MtrunA17_Chr8g0377211 39.437 142 84 2 52 193 16 155 2.94e-25 103
Msa0417620 MtrunA17_Chr8g0377211 39.394 132 80 0 84 215 23 154 6.78e-24 99.4
Msa0417620 MtrunA17_Chr8g0377211 37.097 124 78 0 104 227 20 143 2.47e-17 80.5
Msa0417620 MtrunA17_Chr8g0377211 39.167 120 71 1 130 247 23 142 2.91e-17 80.1
Msa0417620 MtrunA17_Chr5g0424111 37.912 182 110 2 57 238 198 376 1.38e-24 107
Msa0417620 MtrunA17_Chr5g0424111 34.000 150 99 0 79 228 196 345 2.61e-17 85.1
Msa0417620 MtrunA17_Chr8g0336161 34.234 222 140 2 16 237 162 377 3.58e-24 106
Msa0417620 MtrunA17_Chr3g0114791 34.328 201 130 2 31 231 161 359 4.95e-24 105
Msa0417620 MtrunA17_Chr8g0377221 32.314 229 112 4 55 245 4 227 4.31e-23 99.8
Msa0417620 MtrunA17_Chr8g0385241 34.826 201 95 3 63 227 13 213 5.52e-21 96.7
Msa0417620 MtrunA17_Chr8g0385241 29.717 212 123 4 55 247 124 328 1.57e-19 92.0
Msa0417620 MtrunA17_Chr8g0385241 29.386 228 123 4 56 249 56 279 9.06e-18 86.7
Msa0417620 MtrunA17_Chr8g0385241 33.121 157 104 1 72 227 173 329 4.26e-16 81.3
Msa0417620 MtrunA17_Chr8g0385241 32.121 165 102 1 79 233 9 173 9.74e-15 77.0
Msa0417620 MtrunA17_Chr8g0385241 30.247 162 111 2 58 218 183 343 2.31e-13 72.8
Msa0417620 MtrunA17_Chr8g0385241 30.216 139 97 0 56 194 204 342 2.77e-12 69.7
Msa0417620 MtrunA17_Chr8g0383331 32.143 168 98 3 100 263 1 156 3.35e-19 85.5
Msa0417620 MtrunA17_Chr8g0383331 32.653 147 98 1 56 202 4 149 1.26e-17 80.9
Msa0417620 MtrunA17_Chr8g0383331 32.653 147 99 0 79 225 3 149 2.75e-17 80.1
Msa0417620 MtrunA17_Chr5g0398011 41.525 118 68 1 54 171 33 149 5.11e-19 84.3
Msa0417620 MtrunA17_Chr5g0398011 33.621 116 77 0 103 218 35 150 1.15e-13 69.3
Msa0417620 MtrunA17_Chr5g0398011 31.579 114 78 0 81 194 36 149 9.52e-12 63.5
Msa0417620 MtrunA17_Chr5g0398021 44.554 101 55 1 56 156 13 112 8.70e-18 81.3
Msa0417620 MtrunA17_Chr5g0398021 39.423 104 63 0 122 225 9 112 9.14e-15 72.4
Msa0417620 MtrunA17_Chr5g0398021 36.364 99 63 0 105 203 15 113 4.36e-13 67.8
Msa0417620 MtrunA17_Chr5g0398021 33.333 99 64 1 150 246 14 112 5.31e-11 61.6
Msa0417620 MtrunA17_Chr8g0383551 28.571 238 110 9 61 247 33 261 2.36e-16 81.6
Msa0417620 MtrunA17_Chr8g0383551 27.607 163 110 4 67 221 129 291 1.10e-11 67.4
Msa0417620 MtrunA17_Chr1g0210831 35.200 125 79 2 85 208 618 741 4.22e-14 76.3
Msa0417620 MtrunA17_Chr1g0210831 30.400 125 87 0 105 229 615 739 7.23e-12 68.9
Msa0417620 MtrunA17_Chr4g0069951 32.934 167 90 7 429 579 1555 1715 9.17e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0417620 AT1G77740.2 71.567 721 172 9 25 732 53 753 0.0 1041
Msa0417620 AT1G77740.1 71.567 721 172 9 25 732 53 753 0.0 1041
Msa0417620 AT1G21980.1 70.210 715 190 6 25 732 53 751 0.0 1021
Msa0417620 AT2G26420.2 55.510 726 268 15 31 733 26 719 0.0 761
Msa0417620 AT2G26420.3 55.510 726 268 15 31 733 26 719 0.0 761
Msa0417620 AT2G26420.1 55.034 725 259 14 31 733 26 705 0.0 755
Msa0417620 AT3G07960.1 54.137 713 276 14 51 732 22 714 0.0 725
Msa0417620 AT3G07960.1 35.514 107 67 1 143 247 21 127 3.07e-14 77.0
Msa0417620 AT3G56960.2 51.226 734 284 14 51 732 67 778 0.0 721
Msa0417620 AT3G56960.1 51.226 734 284 14 51 732 67 778 0.0 721
Msa0417620 AT2G41210.1 51.293 735 277 14 51 732 65 771 0.0 708
Msa0417620 AT3G07960.3 55.417 563 219 10 51 583 22 582 0.0 607
Msa0417620 AT3G07960.3 35.514 107 67 1 143 247 21 127 6.12e-14 75.9
Msa0417620 AT3G07960.2 55.417 563 219 10 51 583 22 582 0.0 606
Msa0417620 AT3G07960.2 35.514 107 67 1 143 247 21 127 7.75e-14 75.5
Msa0417620 AT3G07960.4 55.417 563 219 10 51 583 22 582 0.0 606
Msa0417620 AT3G07960.4 35.514 107 67 1 143 247 21 127 7.75e-14 75.5
Msa0417620 AT3G09920.3 40.814 811 347 19 28 732 29 812 0.0 558
Msa0417620 AT3G09920.4 40.814 811 347 19 28 732 29 812 0.0 558
Msa0417620 AT3G09920.2 40.814 811 347 19 28 732 29 812 0.0 558
Msa0417620 AT3G09920.1 40.814 811 347 19 28 732 29 812 0.0 558
Msa0417620 AT1G10900.2 41.276 768 351 15 49 733 4 754 0.0 546
Msa0417620 AT1G10900.1 41.276 768 351 15 49 733 4 754 0.0 546
Msa0417620 AT1G10900.3 41.276 768 351 15 49 733 4 754 0.0 546
Msa0417620 AT1G60890.1 38.608 790 352 18 49 731 4 767 1.42e-170 509
Msa0417620 AT1G60890.2 37.028 794 355 21 51 731 18 779 1.17e-152 463
Msa0417620 AT1G01460.1 38.498 426 209 10 354 732 3 422 8.35e-79 259
Msa0417620 AT4G01190.1 36.935 398 193 6 371 729 12 390 3.65e-74 246
Msa0417620 AT4G01190.3 36.935 398 193 6 371 729 22 400 7.26e-74 245
Msa0417620 AT4G01190.2 36.935 398 193 6 371 729 22 400 7.26e-74 245
Msa0417620 AT2G35170.1 34.518 197 125 2 59 255 229 421 1.45e-26 114
Msa0417620 AT4G17080.1 35.260 173 111 1 57 229 258 429 5.90e-25 110
Msa0417620 AT4G17080.1 38.793 116 71 0 72 187 318 433 7.90e-21 97.1
Msa0417620 AT4G17080.1 34.899 149 95 1 79 227 235 381 4.29e-17 85.5
Msa0417620 AT1G77660.1 34.715 193 122 2 42 231 161 352 4.56e-24 106
Msa0417620 AT1G21920.2 35.260 173 111 1 57 229 175 346 1.00e-22 101
Msa0417620 AT1G21920.2 38.261 115 71 0 72 186 235 349 1.41e-15 79.7
Msa0417620 AT1G21920.2 30.667 150 81 1 102 228 173 322 1.99e-12 70.1
Msa0417620 AT1G21920.2 36.792 106 65 2 144 247 169 274 9.63e-11 64.7
Msa0417620 AT1G21920.1 35.260 173 111 1 57 229 175 346 1.08e-22 102
Msa0417620 AT1G21920.1 38.261 115 71 0 72 186 235 349 1.55e-15 80.1
Msa0417620 AT1G21920.1 30.667 150 81 1 102 228 173 322 1.58e-12 70.5
Msa0417620 AT1G21920.1 36.792 106 65 2 144 247 169 274 9.12e-11 65.1
Msa0417620 AT1G34260.2 32.161 199 111 7 398 579 1192 1383 1.08e-14 79.0
Msa0417620 AT1G34260.1 32.161 199 111 7 398 579 1192 1383 1.08e-14 79.0
Msa0417620 AT1G34260.3 32.161 199 111 7 398 579 1192 1383 1.08e-14 79.0
Msa0417620 AT1G34260.4 32.161 199 111 7 398 579 952 1143 1.29e-14 78.6
Msa0417620 AT1G75010.1 33.594 128 83 2 82 208 604 730 6.92e-14 75.9
Msa0417620 AT1G75010.1 28.000 125 90 0 105 229 604 728 6.28e-11 66.2

Find 220 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATGTTGTTCTATATTT+TGG 0.034831 3_2:+64873811 Msa0417620:CDS
GTTGAAGGTGGAAAGGATTT+TGG 0.125060 3_2:+64871255 Msa0417620:CDS
ATGGCAAAATCTTCAAAATT+TGG 0.147602 3_2:-64874173 None:intergenic
TTGATTTGAAGGAGAAATTT+TGG 0.169689 3_2:+64871664 Msa0417620:CDS
CGAGTTTAAGTTAGGTAAAA+TGG 0.171327 3_2:+64870810 Msa0417620:CDS
GCCATGCGCTCTGCTCTTGC+TGG 0.224688 3_2:-64873715 None:intergenic
TTAATCTTCAATTGGGTATA+AGG 0.226807 3_2:+64871490 Msa0417620:CDS
CTCTCTCTCTTATATCCTTC+TGG 0.242638 3_2:+64870216 Msa0417620:five_prime_UTR
TCACTTGTGACAAAATTCTA+TGG 0.265062 3_2:+64872287 Msa0417620:CDS
ACAATTGAGGAAGCGATTTC+AGG 0.271948 3_2:+64871966 Msa0417620:CDS
AATTCGATTGTTATGCTTGT+AGG 0.287269 3_2:-64870589 None:intergenic
CTTTGAACCAATTTCTTTGC+AGG 0.287736 3_2:-64872595 None:intergenic
CAATTTCGAGCTCTCTTTCC+TGG 0.289284 3_2:-64874072 None:intergenic
TGTTTCGCCTGCAAAGAAAT+TGG 0.293239 3_2:+64872588 Msa0417620:CDS
GGAAAATTCTCGTGGCCTTC+AGG 0.294565 3_2:+64870772 Msa0417620:CDS
GTATCCGCGCATTTGGATTC+CGG 0.295358 3_2:-64874381 None:intergenic
AAGCAGTTTCGACGGAATTC+TGG 0.296681 3_2:+64871396 Msa0417620:CDS
TTTGGAAGCTGAAGGAATTA+TGG 0.301969 3_2:+64872746 Msa0417620:CDS
TGATAATACTTGTGACAAAA+TGG 0.310651 3_2:+64872803 Msa0417620:CDS
AATTATGGATTACAGTCTTT+TGG 0.313536 3_2:+64872761 Msa0417620:CDS
TGGGAATCTGATGGAGAAAA+AGG 0.323752 3_2:+64871291 Msa0417620:CDS
CAATAGACTGTTCGATTAAC+AGG 0.324053 3_2:+64874122 Msa0417620:three_prime_UTR
CCTTCAGTGAACCATCATTA+TGG 0.332152 3_2:-64874192 None:intergenic
TCTTATGCTTAATCTTCAAT+TGG 0.334042 3_2:+64871482 Msa0417620:CDS
GTTTCAGGAAATCATTGATT+AGG 0.336752 3_2:+64873677 Msa0417620:intron
GTTGGGATGTGTAGATTCTT+TGG 0.344943 3_2:+64874283 Msa0417620:three_prime_UTR
AGTAAACACACCTTGTCCTT+TGG 0.347165 3_2:-64871106 None:intergenic
TCCGTTTGGTGTGTTGTTGC+CGG 0.352531 3_2:-64870677 None:intergenic
TTTCTGTCTTTCCATTGGTT+GGG 0.355867 3_2:+64874266 Msa0417620:three_prime_UTR
GTAAACACACCTTGTCCTTT+GGG 0.359779 3_2:-64871105 None:intergenic
GGAACGCTTGTTTGGTTGAA+TGG 0.360362 3_2:+64871048 Msa0417620:CDS
AAGGAAAAGGGAGGTATGTT+TGG 0.362141 3_2:+64870971 Msa0417620:CDS
TAATATCATATTCTACTTTG+TGG 0.362188 3_2:-64874309 None:intergenic
CGAAACTGCTTAATCTCTTT+CGG 0.362194 3_2:-64871384 None:intergenic
CGAACATGTTTCTCAATATG+AGG 0.363324 3_2:+64872262 Msa0417620:CDS
CGAGGTAAAGCTTCCGGAAA+TGG 0.364477 3_2:+64870751 Msa0417620:CDS
CAATGCGACAAGGAGTAAAA+TGG 0.367842 3_2:-64873780 None:intergenic
TTCAATCTTCTTTATTGAAT+GGG 0.369480 3_2:+64871181 Msa0417620:CDS
ACACTTTCCTCTCCTCTTGC+CGG 0.370218 3_2:+64870422 Msa0417620:five_prime_UTR
TTTCAATCTTCTTTATTGAA+TGG 0.371669 3_2:+64871180 Msa0417620:CDS
TAGTGATTGGTGCTATTTAC+TGG 0.377186 3_2:-64870182 None:intergenic
ATAATGTATCGGTGTTGAAT+AGG 0.380784 3_2:+64871337 Msa0417620:CDS
GAGATATTTACAGTGGTTCA+TGG 0.381217 3_2:+64870863 Msa0417620:CDS
GAAGTTGCTATGTTGGGAAT+TGG 0.382649 3_2:+64871139 Msa0417620:CDS
ACGGAAGAGGAACGCTTGTT+TGG 0.383159 3_2:+64871040 Msa0417620:CDS
TGTCTTGTAGCTCTGCTTCA+AGG 0.388811 3_2:-64872995 None:intergenic
CTCGAAATTGATTCGGGTGT+TGG 0.389106 3_2:+64874085 Msa0417620:three_prime_UTR
AAGAATGTTCAAGAAGGAAA+AGG 0.390966 3_2:+64870958 Msa0417620:CDS
AAGTAAAGTATCCGCGCATT+TGG 0.391357 3_2:-64874388 None:intergenic
AAGGACAAGGTGTGTTTACT+TGG 0.393359 3_2:+64871109 Msa0417620:CDS
CTCAGGGAGCTTTCATCTCC+TGG 0.397244 3_2:+64872033 Msa0417620:CDS
TAATCATAAATCTGTCATCT+TGG 0.401726 3_2:-64872083 None:intergenic
AACCTCTTCGAGTAAAGCTT+TGG 0.403371 3_2:-64873931 None:intergenic
GTTCTGCTTTGTTTCTACTT+TGG 0.404662 3_2:-64870325 None:intergenic
TACGAAGGCGAGTTTAAGTT+AGG 0.409763 3_2:+64870802 Msa0417620:CDS
TCTTACATGGGAACTTTCTC+CGG 0.410376 3_2:+64870658 Msa0417620:CDS
GTACGGCCGGTGGTAGCAAC+CGG 0.415701 3_2:-64870535 None:intergenic
TGCTGAAGTGTGACCGGGTA+CGG 0.416039 3_2:-64870552 None:intergenic
GATTACATGTTAGCTATTTG+TGG 0.418084 3_2:+64872000 Msa0417620:CDS
GATTGCCCATCACGATGAAC+CGG 0.420765 3_2:-64872436 None:intergenic
TTAGGTAAAATGGAAGGTTC+TGG 0.422048 3_2:+64870820 Msa0417620:CDS
AGGAAATCATTGATTAGGTT+AGG 0.422069 3_2:+64873682 Msa0417620:intron
TGGAAACGAGGTAAAGCTTC+CGG 0.422405 3_2:+64870745 Msa0417620:CDS
AAGAGAGCTCGAAATTGATT+CGG 0.428552 3_2:+64874078 Msa0417620:three_prime_UTR
ATTGATTCGGGTGTTGGAAT+TGG 0.431077 3_2:+64874091 Msa0417620:three_prime_UTR
CATACCTTCTGGCCTCCAAT+TGG 0.438269 3_2:-64872326 None:intergenic
TTGACCAATACACCAGTCTT+GGG 0.443312 3_2:+64873752 Msa0417620:CDS
ATTGAGATCGAGGTCTTTGA+GGG 0.447025 3_2:-64872561 None:intergenic
ACCGGGTGAAACTATATGTA+AGG 0.448524 3_2:+64871443 Msa0417620:CDS
ACGGAGATTATTATGAAGGT+TGG 0.448575 3_2:+64870929 Msa0417620:CDS
CTTATGCTTAATCTTCAATT+GGG 0.449000 3_2:+64871483 Msa0417620:CDS
TCCGGCTGCTGAAGTGTGAC+CGG 0.449099 3_2:-64870558 None:intergenic
TTTGACCAATACACCAGTCT+TGG 0.451828 3_2:+64873751 Msa0417620:CDS
AATTGAGATCGAGGTCTTTG+AGG 0.452408 3_2:-64872562 None:intergenic
AGAATGTTCAAGAAGGAAAA+GGG 0.454701 3_2:+64870959 Msa0417620:CDS
TGGAGTAATCTAGTTATTGA+TGG 0.457170 3_2:-64870285 None:intergenic
AATCATAAATCTGTCATCTT+GGG 0.459242 3_2:-64872082 None:intergenic
CACTTGTGACAAAATTCTAT+GGG 0.459389 3_2:+64872288 Msa0417620:CDS
AATTGATCTGAATAATATCC+AGG 0.461248 3_2:+64874054 Msa0417620:three_prime_UTR
GTACATTGTGTCAAACCAAT+TGG 0.461773 3_2:+64872311 Msa0417620:CDS
CTAACTTATAGGTACTTCTT+CGG 0.462244 3_2:+64872222 Msa0417620:intron
TCATCCCAAGACTGGTGTAT+TGG 0.465016 3_2:-64873756 None:intergenic
AGAGAGCTCGAAATTGATTC+GGG 0.465339 3_2:+64874079 Msa0417620:three_prime_UTR
ACCCAACGGTGATTCTTACA+TGG 0.468531 3_2:+64870645 Msa0417620:CDS
TGTTTCTGAGGTTAAGAGAC+CGG 0.469082 3_2:+64871425 Msa0417620:CDS
TGGAAGAACGGTGTTATAAA+CGG 0.469095 3_2:+64871021 Msa0417620:CDS
GGTAACGGAGATTATTATGA+AGG 0.472824 3_2:+64870925 Msa0417620:CDS
CCATAGGCGATTTGACTTGA+AGG 0.475303 3_2:+64872481 Msa0417620:CDS
AAGAGGTTTCGTGATTTCGT+GGG 0.476391 3_2:+64873946 Msa0417620:CDS
GAACGCTTGTTTGGTTGAAT+GGG 0.476408 3_2:+64871049 Msa0417620:CDS
GGAATCGTTATGAAGGTGAA+TGG 0.477974 3_2:+64871070 Msa0417620:CDS
AACAACACACCAAACGGATC+AGG 0.483095 3_2:+64870682 Msa0417620:CDS
AGAGAGAGGTGCATAGTGAT+TGG 0.484279 3_2:-64870195 None:intergenic
TTTGTGGAAATGCTGCCCTC+AGG 0.484497 3_2:+64872016 Msa0417620:CDS
AAAATATAGAACAACATCAT+AGG 0.485216 3_2:-64873809 None:intergenic
CCTTCAAGTCAAATCGCCTA+TGG 0.486114 3_2:-64872481 None:intergenic
GACAGGGATAGAGTCAAATC+TGG 0.491174 3_2:+64873014 Msa0417620:CDS
GTAATCTAGTTATTGATGGC+TGG 0.491561 3_2:-64870281 None:intergenic
AGGAGAGGAAAGTGTTGTGT+TGG 0.492228 3_2:-64870414 None:intergenic
CAAGAGCAGAGCGCATGGCT+CGG 0.492297 3_2:+64873719 Msa0417620:CDS
GAGATTATTATGAAGGTTGG+TGG 0.493359 3_2:+64870932 Msa0417620:CDS
GTTGTATCTACGAAGGTGAA+TGG 0.494101 3_2:+64870725 Msa0417620:CDS
CTTTCATCTCCTGGCAAAAG+TGG 0.494331 3_2:+64872042 Msa0417620:CDS
TCCTTCAAATCAAAATCACT+TGG 0.494789 3_2:-64871654 None:intergenic
TGGACTAGGTTTCCTTCTGA+AGG 0.496639 3_2:+64871684 Msa0417620:CDS
TCCGGCAACAACACACCAAA+CGG 0.497021 3_2:+64870676 Msa0417620:CDS
GTATCGGTGTTGAATAGGAT+TGG 0.499415 3_2:+64871342 Msa0417620:CDS
CGAGTAAAGCTTTGGATCAA+CGG 0.499572 3_2:-64873923 None:intergenic
ACGGATCAGGAAAATACAAA+TGG 0.500009 3_2:+64870695 Msa0417620:CDS
CCGGCTGCTGAAGTGTGACC+GGG 0.500586 3_2:-64870557 None:intergenic
TTGGAAGGATTACTGCCCTA+TGG 0.500847 3_2:+64871746 Msa0417620:CDS
ATCCAAAGCTTTACTCGAAG+AGG 0.501514 3_2:+64873929 Msa0417620:CDS
TTACGACATCAGCAAGAAGC+TGG 0.503669 3_2:+64873855 Msa0417620:CDS
TTATTGATGGCTGGCTAGCT+CGG 0.503962 3_2:-64870272 None:intergenic
AAATGCGCGGATACTTTACT+TGG 0.507314 3_2:+64874390 Msa0417620:three_prime_UTR
TTGCTACCACCGGCCGTACC+CGG 0.507386 3_2:+64870539 Msa0417620:CDS
ATCAATCGATGGAGTTCCGT+TGG 0.514044 3_2:+64871727 Msa0417620:CDS
CCAACATAGCAACTTCCATC+AGG 0.514644 3_2:-64871132 None:intergenic
CAGCCGCCGGTTGCTACCAC+CGG 0.515783 3_2:+64870529 Msa0417620:CDS
AAGTCAAATCGCCTATGGAT+TGG 0.519998 3_2:-64872476 None:intergenic
TCAACGGCTGAGATTGATGA+AGG 0.521839 3_2:-64873907 None:intergenic
CTGATGGAAGTTGCTATGTT+GGG 0.522196 3_2:+64871133 Msa0417620:CDS
GGAATGAGTATATTGGTGAA+TGG 0.523321 3_2:+64871001 Msa0417620:CDS
TTGCTGTGACGATGAGGAAA+AGG 0.523348 3_2:+64871226 Msa0417620:CDS
TGTTTCATACTCGATGCTAC+CGG 0.523766 3_2:-64873987 None:intergenic
CCCGGTCACACTTCAGCAGC+CGG 0.523983 3_2:+64870557 Msa0417620:CDS
GGAAAGAAACGTTACGGTAA+CGG 0.525703 3_2:+64870910 Msa0417620:CDS
GATAATACTTGTGACAAAAT+GGG 0.528057 3_2:+64872804 Msa0417620:CDS
ATCGATGGAGTTCCGTTGGA+AGG 0.528474 3_2:+64871731 Msa0417620:CDS
CCTGATGGAAGTTGCTATGT+TGG 0.529482 3_2:+64871132 Msa0417620:CDS
GAAGAGGTTTCGTGATTTCG+TGG 0.532343 3_2:+64873945 Msa0417620:CDS
TTGAAGCAGAGCTACAAGAC+AGG 0.533588 3_2:+64872997 Msa0417620:CDS
TTGTGGAAATGCTGCCCTCA+GGG 0.535698 3_2:+64872017 Msa0417620:CDS
CCCAACGGTGATTCTTACAT+GGG 0.537955 3_2:+64870646 Msa0417620:CDS
ACTGTTCGATTAACAGGCTA+TGG 0.540168 3_2:+64874128 Msa0417620:three_prime_UTR
TGTATTTGTAGGCACTCTGT+TGG 0.540782 3_2:+64871600 Msa0417620:intron
GAATCGTTATGAAGGTGAAT+GGG 0.546448 3_2:+64871071 Msa0417620:CDS
TTGTAGGCACTCTGTTGGAA+AGG 0.546723 3_2:+64871605 Msa0417620:intron
ATAGCTAACATGTAATCAGC+AGG 0.548324 3_2:-64871994 None:intergenic
AACGGTGTTATAAACGGAAG+AGG 0.552103 3_2:+64871027 Msa0417620:CDS
CCCTTACATATAGTTTCACC+CGG 0.553878 3_2:-64871444 None:intergenic
GCTCGGAATATCCAATCCAT+AGG 0.553953 3_2:+64872465 Msa0417620:CDS
ACAGACCCGGTTCATCGTGA+TGG 0.557962 3_2:+64872430 Msa0417620:intron
CTTCAGTCTTATCTGTCATA+CGG 0.558023 3_2:-64872517 None:intergenic
CATAGGCGATTTGACTTGAA+GGG 0.561580 3_2:+64872482 Msa0417620:CDS
CCATAATGATGGTTCACTGA+AGG 0.562321 3_2:+64874192 Msa0417620:three_prime_UTR
AAAATGGCTCATCCCAAGAC+TGG 0.564949 3_2:-64873764 None:intergenic
CCCATGTAAGAATCACCGTT+GGG 0.565218 3_2:-64870646 None:intergenic
GCCAGCAAGAGCAGAGCGCA+TGG 0.570278 3_2:+64873714 Msa0417620:CDS
TTTAAGTTAGGTAAAATGGA+AGG 0.570615 3_2:+64870814 Msa0417620:CDS
GACTTGAAGGGATCGTCACA+TGG 0.570790 3_2:+64872494 Msa0417620:CDS
CTCCTCAGATTCACAGCCGC+CGG 0.571502 3_2:+64870516 Msa0417620:CDS
ATTTGTATATGGGAATCTGA+TGG 0.573510 3_2:+64871282 Msa0417620:CDS
CAGACCCGGTTCATCGTGAT+GGG 0.574346 3_2:+64872431 Msa0417620:intron
ATGATGGTTCACTGAAGGCA+AGG 0.575597 3_2:+64874197 Msa0417620:three_prime_UTR
GTGTGACCGGGTACGGCCGG+TGG 0.576629 3_2:-64870545 None:intergenic
GGTGTGTTTACTTGGCCTGA+TGG 0.579317 3_2:+64871117 Msa0417620:CDS
AACTCCATCGATTGATGTGG+TGG 0.582178 3_2:-64871720 None:intergenic
AATCTACACATCCCAACCAA+TGG 0.584960 3_2:-64874277 None:intergenic
TGATATTGTTGATAATGTAT+CGG 0.585855 3_2:+64871326 Msa0417620:CDS
GGAGAATATTCAGCGAGGAC+CGG 0.588709 3_2:+64873968 Msa0417620:CDS
ATTGAGGAAGCGATTTCAGG+TGG 0.589268 3_2:+64871969 Msa0417620:CDS
GAGCAGAGCGCATGGCTCGG+AGG 0.591132 3_2:+64873722 Msa0417620:CDS
AATGTTGTTATGAATCATGA+TGG 0.593051 3_2:+64874018 Msa0417620:three_prime_UTR
AACCGGCGGCTGTGAATCTG+AGG 0.594637 3_2:-64870518 None:intergenic
TTGAATGGGAATCGTTATGA+AGG 0.597420 3_2:+64871063 Msa0417620:CDS
TATGAAGGTGAATGGGAGAA+TGG 0.597679 3_2:+64871078 Msa0417620:CDS
GTTTCTGAGGTTAAGAGACC+GGG 0.597952 3_2:+64871426 Msa0417620:CDS
TCCCATGTAAGAATCACCGT+TGG 0.598097 3_2:-64870647 None:intergenic
GAAGTGTGACCGGGTACGGC+CGG 0.598746 3_2:-64870548 None:intergenic
ATTGTCCAGACAAATTGAGA+GGG 0.600968 3_2:+64872713 Msa0417620:intron
TGGAAGAAGAATGTTCAAGA+AGG 0.601723 3_2:+64870952 Msa0417620:CDS
CAAACCAATTGGAGGCCAGA+AGG 0.602903 3_2:+64872322 Msa0417620:CDS
GCATGCATACAAGTCACTGC+AGG 0.604105 3_2:+64873879 Msa0417620:CDS
GTAATCTTAGATCCTTCAGA+AGG 0.607853 3_2:-64871696 None:intergenic
CCGGGTGAAACTATATGTAA+GGG 0.608012 3_2:+64871444 Msa0417620:CDS
AATTGTCCAGACAAATTGAG+AGG 0.609484 3_2:+64872712 Msa0417620:intron
ATTGCCCATCACGATGAACC+GGG 0.610262 3_2:-64872435 None:intergenic
GGGATAGAGTCAAATCTGGC+CGG 0.612890 3_2:+64873018 Msa0417620:CDS
GGAAAATACAAATGGAACGA+TGG 0.614574 3_2:+64870703 Msa0417620:CDS
TGGGAGAATGGTGTTCCCAA+AGG 0.620371 3_2:+64871090 Msa0417620:CDS
TCGGTGTTGAATAGGATTGG+AGG 0.620913 3_2:+64871345 Msa0417620:CDS
CATTGTGTCAAACCAATTGG+AGG 0.621598 3_2:+64872314 Msa0417620:CDS
CAGAGTGAAAAGTTTATGCG+TGG 0.622075 3_2:+64872963 Msa0417620:CDS
AGGAGATGAAAGCTCCCTGA+GGG 0.626112 3_2:-64872031 None:intergenic
CGGCCGGTGGTAGCAACCGG+CGG 0.627489 3_2:-64870532 None:intergenic
TATATTGGTGAATGGAAGAA+CGG 0.630785 3_2:+64871009 Msa0417620:CDS
CCTTCGTAAATAGATCCTGA+AGG 0.631003 3_2:-64870787 None:intergenic
TGATGGTTCACTGAAGGCAA+GGG 0.631854 3_2:+64874198 Msa0417620:three_prime_UTR
TACGCCACCACATCAATCGA+TGG 0.633033 3_2:+64871716 Msa0417620:CDS
ATAACAGAAAAGAAGCCAGA+AGG 0.634905 3_2:-64870231 None:intergenic
CGGCGGCTGTGAATCTGAGG+AGG 0.635794 3_2:-64870515 None:intergenic
CGGAACTCCATCGATTGATG+TGG 0.636137 3_2:-64871723 None:intergenic
TGATCTTTGTACATGAAAGA+TGG 0.636260 3_2:+64874221 Msa0417620:three_prime_UTR
GAAACACAAAATTGAGATCG+AGG 0.636698 3_2:-64872571 None:intergenic
GAGATCGAGGTCTTTGAGGG+TGG 0.639500 3_2:-64872558 None:intergenic
GTCACAGCAAAATCATCACC+AGG 0.640981 3_2:-64871213 None:intergenic
AATGGTGTTCCCAAAGGACA+AGG 0.641290 3_2:+64871096 Msa0417620:CDS
CGGGTGAAACTATATGTAAG+GGG 0.642189 3_2:+64871445 Msa0417620:CDS
CCGGAAATGGAAAATTCTCG+TGG 0.642730 3_2:+64870764 Msa0417620:CDS
AGAGGTTTCGTGATTTCGTG+GGG 0.645463 3_2:+64873947 Msa0417620:CDS
AAGAGATTAAGCAGTTTCGA+CGG 0.648335 3_2:+64871388 Msa0417620:CDS
TGAAGCAGAGCTACAAGACA+GGG 0.650372 3_2:+64872998 Msa0417620:CDS
ATGTTCAAGAAGGAAAAGGG+AGG 0.651936 3_2:+64870962 Msa0417620:CDS
TAGCATCGAGTATGAAACAA+AGG 0.652241 3_2:+64873991 Msa0417620:exon
CCTTCAGGATCTATTTACGA+AGG 0.655516 3_2:+64870787 Msa0417620:CDS
ACCACTGTAAATATCTCCGT+CGG 0.657482 3_2:-64870857 None:intergenic
GGTTACGGAAAGAAACGTTA+CGG 0.659807 3_2:+64870904 Msa0417620:CDS
TAGGTCTCCCCAATGCGACA+AGG 0.659959 3_2:-64873790 None:intergenic
TAGGGCAGTAATCCTTCCAA+CGG 0.670381 3_2:-64871743 None:intergenic
TCTTTGTACATGAAAGATGG+TGG 0.688843 3_2:+64874224 Msa0417620:three_prime_UTR
AACGATGGTTGTATCTACGA+AGG 0.690640 3_2:+64870718 Msa0417620:CDS
CAACGGCTGAGATTGATGAA+GGG 0.697768 3_2:-64873906 None:intergenic
ACTTGTGACAAAATTCTATG+GGG 0.699706 3_2:+64872289 Msa0417620:CDS
GAAACCGGAATCCAAATGCG+CGG 0.700353 3_2:+64874377 Msa0417620:three_prime_UTR
CAGGAGATGAAAGCTCCCTG+AGG 0.700563 3_2:-64872032 None:intergenic
TGAAAGAAAATGAATCACTG+TGG 0.704144 3_2:-64870380 None:intergenic
TCCGACGGAGATATTTACAG+TGG 0.708834 3_2:+64870856 Msa0417620:CDS
TACGAAGGTGAATGGAAACG+AGG 0.737416 3_2:+64870733 Msa0417620:CDS
CGTGGGGAGAATATTCAGCG+AGG 0.748269 3_2:+64873963 Msa0417620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATTATTGCTATTTTAA+GGG + chr3_2:64872361-64872380 Msa0417620:intron 10.0%
!!! TTTAAGTTGATAAAATAATT+AGG + chr3_2:64873070-64873089 Msa0417620:intron 10.0%
!!! GATAAATTATTGCTATTTTA+AGG + chr3_2:64872360-64872379 Msa0417620:intron 15.0%
!! ATAAACAATATAATAAGTCT+TGG - chr3_2:64872918-64872937 None:intergenic 15.0%
!!! ATTATATTGTTTATCCTTTT+AGG + chr3_2:64872924-64872943 Msa0417620:intron 15.0%
!!! TTCTATAAAATGTTGATTTA+GGG - chr3_2:64873152-64873171 None:intergenic 15.0%
!!! ATTCTATAAAATGTTGATTT+AGG - chr3_2:64873153-64873172 None:intergenic 15.0%
!!! CAACATTTTATAGAATAATT+AGG + chr3_2:64873157-64873176 Msa0417620:intron 15.0%
!! ACATAAAAATATGAATGATT+AGG - chr3_2:64873339-64873358 None:intergenic 15.0%
!! TTATGAATGTAAAAAATGTT+AGG + chr3_2:64874329-64874348 Msa0417620:three_prime_UTR 15.0%
!!! TAATCAATGCATTTTTTTTC+CGG - chr3_2:64870444-64870463 None:intergenic 20.0%
!! TTTCAATCTTCTTTATTGAA+TGG + chr3_2:64871180-64871199 Msa0417620:CDS 20.0%
!! TTCAATCTTCTTTATTGAAT+GGG + chr3_2:64871181-64871200 Msa0417620:CDS 20.0%
!!! TGATATTGTTGATAATGTAT+CGG + chr3_2:64871326-64871345 Msa0417620:CDS 20.0%
!! AATTATTAACATTAACTACC+AGG - chr3_2:64871800-64871819 None:intergenic 20.0%
!! CAATAATTTATCTTCAACAA+AGG - chr3_2:64872352-64872371 None:intergenic 20.0%
!! AAACAAGCAATCAATTAATT+AGG - chr3_2:64873473-64873492 None:intergenic 20.0%
!!! ATACCATCTCTATATTTTAT+TGG + chr3_2:64873509-64873528 Msa0417620:intron 20.0%
!!! TAAATTTTGATGTGTTAAGT+AGG + chr3_2:64873645-64873664 Msa0417620:intron 20.0%
!! AAAATATAGAACAACATCAT+AGG - chr3_2:64873812-64873831 None:intergenic 20.0%
!!! TATGATGTTGTTCTATATTT+TGG + chr3_2:64873811-64873830 Msa0417620:CDS 20.0%
!!! ATGATGTTGTTCTATATTTT+GGG + chr3_2:64873812-64873831 Msa0417620:CDS 20.0%
!! TAATATCATATTCTACTTTG+TGG - chr3_2:64874312-64874331 None:intergenic 20.0%
!! AATGTAAAAAATGTTAGGTA+GGG + chr3_2:64874334-64874353 Msa0417620:three_prime_UTR 20.0%
!! CTTTGGAGAAAAATAAAAGT+TGG - chr3_2:64870311-64870330 None:intergenic 25.0%
!! TTTAAGTTAGGTAAAATGGA+AGG + chr3_2:64870814-64870833 Msa0417620:CDS 25.0%
!!! ATTTTGGGAAGATTTGTATA+TGG + chr3_2:64871271-64871290 Msa0417620:CDS 25.0%
!!! TTTTGGGAAGATTTGTATAT+GGG + chr3_2:64871272-64871291 Msa0417620:CDS 25.0%
! TCTTATGCTTAATCTTCAAT+TGG + chr3_2:64871482-64871501 Msa0417620:CDS 25.0%
! CTTATGCTTAATCTTCAATT+GGG + chr3_2:64871483-64871502 Msa0417620:CDS 25.0%
! TTAATCTTCAATTGGGTATA+AGG + chr3_2:64871490-64871509 Msa0417620:CDS 25.0%
!! TTTGTAATTTGCATTAGTTC+TGG + chr3_2:64871556-64871575 Msa0417620:intron 25.0%
!! TTCTGGATTTAAGGAATTTT+TGG + chr3_2:64871573-64871592 Msa0417620:intron 25.0%
!!! TTTTTGGTTTGTGTATTTGT+AGG + chr3_2:64871589-64871608 Msa0417620:intron 25.0%
!!! TTGATTTGAAGGAGAAATTT+TGG + chr3_2:64871664-64871683 Msa0417620:CDS 25.0%
!! AGTTTCGTTCTTTACATTTT+TGG + chr3_2:64871895-64871914 Msa0417620:intron 25.0%
! TTATTCTCCTTGTGTTAATT+AGG - chr3_2:64871925-64871944 None:intergenic 25.0%
!! TTTTGAATTTCAGACAATTG+AGG + chr3_2:64871953-64871972 Msa0417620:intron 25.0%
! AATCATAAATCTGTCATCTT+GGG - chr3_2:64872085-64872104 None:intergenic 25.0%
! TAATCATAAATCTGTCATCT+TGG - chr3_2:64872086-64872105 None:intergenic 25.0%
!!! AATTATGGATTACAGTCTTT+TGG + chr3_2:64872761-64872780 Msa0417620:CDS 25.0%
! TGATAATACTTGTGACAAAA+TGG + chr3_2:64872803-64872822 Msa0417620:CDS 25.0%
! GATAATACTTGTGACAAAAT+GGG + chr3_2:64872804-64872823 Msa0417620:CDS 25.0%
!! TTTTATGTTGACGACATTAA+TGG + chr3_2:64873351-64873370 Msa0417620:intron 25.0%
! TTGAATTATCTTTAGCAAGT+AGG + chr3_2:64873391-64873410 Msa0417620:intron 25.0%
! ATTAATTGATTGCTTGTTTC+TGG + chr3_2:64873474-64873493 Msa0417620:intron 25.0%
! TTGCCAATAAAATATAGAGA+TGG - chr3_2:64873515-64873534 None:intergenic 25.0%
! CTTTATAAATGCTGAAGTAT+AGG - chr3_2:64873549-64873568 None:intergenic 25.0%
! CAGCATTTATAAAGTAGTTA+TGG + chr3_2:64873555-64873574 Msa0417620:intron 25.0%
! TATAAAGTAGTTATGGTTGT+TGG + chr3_2:64873562-64873581 Msa0417620:intron 25.0%
! AATGTTGTTATGAATCATGA+TGG + chr3_2:64874018-64874037 Msa0417620:three_prime_UTR 25.0%
! AATTGATCTGAATAATATCC+AGG + chr3_2:64874054-64874073 Msa0417620:three_prime_UTR 25.0%
! ATGGCAAAATCTTCAAAATT+TGG - chr3_2:64874176-64874195 None:intergenic 25.0%
! AATGGAAAGACAGAAAAAAA+AGG - chr3_2:64874262-64874281 None:intergenic 25.0%
!!! TTTTTTTTCTGTCTTTCCAT+TGG + chr3_2:64874261-64874280 Msa0417620:three_prime_UTR 25.0%
! GAATGTAAAAAATGTTAGGT+AGG + chr3_2:64874333-64874352 Msa0417620:three_prime_UTR 25.0%
! ATGTAAAAAATGTTAGGTAG+GGG + chr3_2:64874335-64874354 Msa0417620:three_prime_UTR 25.0%
!! ATGAAAATGTTTTCAGAAAC+CGG + chr3_2:64874362-64874381 Msa0417620:three_prime_UTR 25.0%
! TCTTTTCTGTTATATCCTTC+TGG + chr3_2:64870241-64870260 Msa0417620:intron 30.0%
TGGAGTAATCTAGTTATTGA+TGG - chr3_2:64870288-64870307 None:intergenic 30.0%
TGGAGAAAAATAAAAGTTGG+TGG - chr3_2:64870308-64870327 None:intergenic 30.0%
TGAAAGAAAATGAATCACTG+TGG - chr3_2:64870383-64870402 None:intergenic 30.0%
AATTCGATTGTTATGCTTGT+AGG - chr3_2:64870592-64870611 None:intergenic 30.0%
! CGAGTTTAAGTTAGGTAAAA+TGG + chr3_2:64870810-64870829 Msa0417620:CDS 30.0%
AAGAATGTTCAAGAAGGAAA+AGG + chr3_2:64870958-64870977 Msa0417620:CDS 30.0%
AGAATGTTCAAGAAGGAAAA+GGG + chr3_2:64870959-64870978 Msa0417620:CDS 30.0%
AAAAACGGGAATGAGTATAT+TGG + chr3_2:64870994-64871013 Msa0417620:CDS 30.0%
TATATTGGTGAATGGAAGAA+CGG + chr3_2:64871009-64871028 Msa0417620:CDS 30.0%
ATTTGTATATGGGAATCTGA+TGG + chr3_2:64871282-64871301 Msa0417620:CDS 30.0%
!! ATAATGTATCGGTGTTGAAT+AGG + chr3_2:64871337-64871356 Msa0417620:CDS 30.0%
!! TTGCATTAGTTCTGGATTTA+AGG + chr3_2:64871564-64871583 Msa0417620:intron 30.0%
!!! ACCAAGTGATTTTGATTTGA+AGG + chr3_2:64871653-64871672 Msa0417620:CDS 30.0%
TCCTTCAAATCAAAATCACT+TGG - chr3_2:64871657-64871676 None:intergenic 30.0%
AATTTCTTTAGCACTCACAT+AGG + chr3_2:64871816-64871835 Msa0417620:intron 30.0%
ACACAAGGAGAATAATGTTA+TGG + chr3_2:64871930-64871949 Msa0417620:intron 30.0%
GATTACATGTTAGCTATTTG+TGG + chr3_2:64872000-64872019 Msa0417620:CDS 30.0%
!! GAGTTTTGTGACTAACTTAT+AGG + chr3_2:64872211-64872230 Msa0417620:intron 30.0%
CTAACTTATAGGTACTTCTT+CGG + chr3_2:64872222-64872241 Msa0417620:intron 30.0%
TCACTTGTGACAAAATTCTA+TGG + chr3_2:64872287-64872306 Msa0417620:CDS 30.0%
CACTTGTGACAAAATTCTAT+GGG + chr3_2:64872288-64872307 Msa0417620:CDS 30.0%
ACTTGTGACAAAATTCTATG+GGG + chr3_2:64872289-64872308 Msa0417620:CDS 30.0%
!! TTGTTATTTAAACACAGACC+CGG + chr3_2:64872417-64872436 Msa0417620:intron 30.0%
TTGTCTGGACAATTATATCA+AGG - chr3_2:64872706-64872725 None:intergenic 30.0%
CAGAACATATTTCAACTTAC+CGG - chr3_2:64873040-64873059 None:intergenic 30.0%
TGTATCATTGTGTTCCTTAA+AGG + chr3_2:64873204-64873223 Msa0417620:intron 30.0%
TACAACATCTCACTTCTTTA+TGG - chr3_2:64873262-64873281 None:intergenic 30.0%
ATAAAGAAGTGAGATGTTGT+AGG + chr3_2:64873261-64873280 Msa0417620:intron 30.0%
AATTATCTTTAGCAAGTAGG+TGG + chr3_2:64873394-64873413 Msa0417620:intron 30.0%
ATTATCTTTAGCAAGTAGGT+GGG + chr3_2:64873395-64873414 Msa0417620:intron 30.0%
!! AGTAGGATTTTTCTTGTTTC+AGG + chr3_2:64873662-64873681 Msa0417620:intron 30.0%
! GTTTCAGGAAATCATTGATT+AGG + chr3_2:64873677-64873696 Msa0417620:intron 30.0%
! AGGAAATCATTGATTAGGTT+AGG + chr3_2:64873682-64873701 Msa0417620:intron 30.0%
! GCATTGAGAATCTTTTTCTA+TGG + chr3_2:64874150-64874169 Msa0417620:three_prime_UTR 30.0%
! TGAAGATTTTGCCATAATGA+TGG + chr3_2:64874181-64874200 Msa0417620:three_prime_UTR 30.0%
TGATCTTTGTACATGAAAGA+TGG + chr3_2:64874221-64874240 Msa0417620:three_prime_UTR 30.0%
!!! GAAAGTGTACAGTTCTTTTT+TGG + chr3_2:64874420-64874439 Msa0417620:three_prime_UTR 30.0%
!! TAGTGATTGGTGCTATTTAC+TGG - chr3_2:64870185-64870204 None:intergenic 35.0%
ATAACAGAAAAGAAGCCAGA+AGG - chr3_2:64870234-64870253 None:intergenic 35.0%
! GTAATCTAGTTATTGATGGC+TGG - chr3_2:64870284-64870303 None:intergenic 35.0%
!! GTTCTGCTTTGTTTCTACTT+TGG - chr3_2:64870328-64870347 None:intergenic 35.0%
!!! GTGATTGACGCATTTTTTGA+AGG - chr3_2:64870474-64870493 None:intergenic 35.0%
! TTGTATTTTCCTGATCCGTT+TGG - chr3_2:64870694-64870713 None:intergenic 35.0%
ACGGATCAGGAAAATACAAA+TGG + chr3_2:64870695-64870714 Msa0417620:CDS 35.0%
GGAAAATACAAATGGAACGA+TGG + chr3_2:64870703-64870722 Msa0417620:CDS 35.0%
TTAGGTAAAATGGAAGGTTC+TGG + chr3_2:64870820-64870839 Msa0417620:CDS 35.0%
GAGATATTTACAGTGGTTCA+TGG + chr3_2:64870863-64870882 Msa0417620:CDS 35.0%
TGGAGTTCCGATAGAAAAAA+CGG + chr3_2:64870883-64870902 Msa0417620:CDS 35.0%
TCCGATAGAAAAAACGGTTA+CGG + chr3_2:64870889-64870908 Msa0417620:CDS 35.0%
!!! TCCGTAACCGTTTTTTCTAT+CGG - chr3_2:64870893-64870912 None:intergenic 35.0%
!! GGTAACGGAGATTATTATGA+AGG + chr3_2:64870925-64870944 Msa0417620:CDS 35.0%
ACGGAGATTATTATGAAGGT+TGG + chr3_2:64870929-64870948 Msa0417620:CDS 35.0%
GAGATTATTATGAAGGTTGG+TGG + chr3_2:64870932-64870951 Msa0417620:CDS 35.0%
TGGAAGAAGAATGTTCAAGA+AGG + chr3_2:64870952-64870971 Msa0417620:CDS 35.0%
GGAATGAGTATATTGGTGAA+TGG + chr3_2:64871001-64871020 Msa0417620:CDS 35.0%
!! TGGAAGAACGGTGTTATAAA+CGG + chr3_2:64871021-64871040 Msa0417620:CDS 35.0%
TTGAATGGGAATCGTTATGA+AGG + chr3_2:64871063-64871082 Msa0417620:CDS 35.0%
GAATCGTTATGAAGGTGAAT+GGG + chr3_2:64871071-64871090 Msa0417620:CDS 35.0%
! TTGAATGGGAGTTTTTATCC+TGG + chr3_2:64871195-64871214 Msa0417620:CDS 35.0%
!!! AGGAAAAGGTGTTTTGTTGA+AGG + chr3_2:64871240-64871259 Msa0417620:CDS 35.0%
!!! AAAAGGTGTTTTGTTGAAGG+TGG + chr3_2:64871243-64871262 Msa0417620:CDS 35.0%
! TTGAAGGTGGAAAGGATTTT+GGG + chr3_2:64871256-64871275 Msa0417620:CDS 35.0%
CGAAACTGCTTAATCTCTTT+CGG - chr3_2:64871387-64871406 None:intergenic 35.0%
AAGAGATTAAGCAGTTTCGA+CGG + chr3_2:64871388-64871407 Msa0417620:CDS 35.0%
!!! TTCTGGTTGTTTTGTTTCTG+AGG + chr3_2:64871413-64871432 Msa0417620:CDS 35.0%
! TGAAGGAGAAATTTTGGACT+AGG + chr3_2:64871670-64871689 Msa0417620:CDS 35.0%
GTAATCTTAGATCCTTCAGA+AGG - chr3_2:64871699-64871718 None:intergenic 35.0%
! ATTACTGCCCTATGGTTTTT+AGG + chr3_2:64871754-64871773 Msa0417620:CDS 35.0%
GGCTATACCTAAAAACCATA+GGG - chr3_2:64871764-64871783 None:intergenic 35.0%
AGGCTATACCTAAAAACCAT+AGG - chr3_2:64871765-64871784 None:intergenic 35.0%
!!! TAGCCTTTTTGTTTTTCACC+TGG + chr3_2:64871779-64871798 Msa0417620:intron 35.0%
CTACCAGGTGAAAAACAAAA+AGG - chr3_2:64871785-64871804 None:intergenic 35.0%
ATAGCTAACATGTAATCAGC+AGG - chr3_2:64871997-64872016 None:intergenic 35.0%
AGTGAAAAAATCCGAAGTCA+AGG + chr3_2:64872110-64872129 Msa0417620:CDS 35.0%
CCAAAAACAAACCTTGACTT+CGG - chr3_2:64872124-64872143 None:intergenic 35.0%
CGAACATGTTTCTCAATATG+AGG + chr3_2:64872262-64872281 Msa0417620:CDS 35.0%
GTACATTGTGTCAAACCAAT+TGG + chr3_2:64872311-64872330 Msa0417620:CDS 35.0%
! CTTCAGTCTTATCTGTCATA+CGG - chr3_2:64872520-64872539 None:intergenic 35.0%
GAAACACAAAATTGAGATCG+AGG - chr3_2:64872574-64872593 None:intergenic 35.0%
CTTTGAACCAATTTCTTTGC+AGG - chr3_2:64872598-64872617 None:intergenic 35.0%
AATTGTCCAGACAAATTGAG+AGG + chr3_2:64872712-64872731 Msa0417620:intron 35.0%
ATTGTCCAGACAAATTGAGA+GGG + chr3_2:64872713-64872732 Msa0417620:intron 35.0%
TTTGGAAGCTGAAGGAATTA+TGG + chr3_2:64872746-64872765 Msa0417620:CDS 35.0%
!! ATGGATTACAGTCTTTTGGT+CGG + chr3_2:64872765-64872784 Msa0417620:CDS 35.0%
CATCTACAATATGCACAGAA+AGG - chr3_2:64872872-64872891 None:intergenic 35.0%
AAGAGTCATGCTTTCCTAAA+AGG - chr3_2:64872941-64872960 None:intergenic 35.0%
! CGGTAAGTTGAAATATGTTC+TGG + chr3_2:64873038-64873057 Msa0417620:intron 35.0%
ACCACATCCATAGTTTAAGT+GGG + chr3_2:64873110-64873129 Msa0417620:intron 35.0%
GTAACTACCCACTTAAACTA+TGG - chr3_2:64873120-64873139 None:intergenic 35.0%
! ATTTTACTCCTTGTCGCATT+GGG + chr3_2:64873782-64873801 Msa0417620:CDS 35.0%
! TAGCATCGAGTATGAAACAA+AGG + chr3_2:64873991-64874010 Msa0417620:exon 35.0%
AAGAGAGCTCGAAATTGATT+CGG + chr3_2:64874078-64874097 Msa0417620:three_prime_UTR 35.0%
CAATAGACTGTTCGATTAAC+AGG + chr3_2:64874122-64874141 Msa0417620:three_prime_UTR 35.0%
TCTTTGTACATGAAAGATGG+TGG + chr3_2:64874224-64874243 Msa0417620:three_prime_UTR 35.0%
! TTTTCTGTCTTTCCATTGGT+TGG + chr3_2:64874265-64874284 Msa0417620:three_prime_UTR 35.0%
! TTTCTGTCTTTCCATTGGTT+GGG + chr3_2:64874266-64874285 Msa0417620:three_prime_UTR 35.0%
GATATAAGAGAGAGAGAGAG+AGG - chr3_2:64870212-64870231 None:intergenic 40.0%
CTCTCTCTCTTATATCCTTC+TGG + chr3_2:64870216-64870235 Msa0417620:five_prime_UTR 40.0%
!!! TGCATTTTTTTTCCGGCAAG+AGG - chr3_2:64870437-64870456 None:intergenic 40.0%
! TGCTTGTAGGTGAGATTTTC+CGG - chr3_2:64870579-64870598 None:intergenic 40.0%
!!! ATGCTTTTTCGCGGTTCTTT+TGG - chr3_2:64870623-64870642 None:intergenic 40.0%
!!! GTTGGGTAAATGCTTTTTCG+CGG - chr3_2:64870632-64870651 None:intergenic 40.0%
!! GCGAAAAAGCATTTACCCAA+CGG + chr3_2:64870631-64870650 Msa0417620:CDS 40.0%
TCTTACATGGGAACTTTCTC+CGG + chr3_2:64870658-64870677 Msa0417620:CDS 40.0%
AACGATGGTTGTATCTACGA+AGG + chr3_2:64870718-64870737 Msa0417620:CDS 40.0%
GTTGTATCTACGAAGGTGAA+TGG + chr3_2:64870725-64870744 Msa0417620:CDS 40.0%
! CCACGAGAATTTTCCATTTC+CGG - chr3_2:64870767-64870786 None:intergenic 40.0%
CCTTCGTAAATAGATCCTGA+AGG - chr3_2:64870790-64870809 None:intergenic 40.0%
CCTTCAGGATCTATTTACGA+AGG + chr3_2:64870787-64870806 Msa0417620:CDS 40.0%
! TACGAAGGCGAGTTTAAGTT+AGG + chr3_2:64870802-64870821 Msa0417620:CDS 40.0%
!!! GAAGGTTCTGGAACTTTTAC+TGG + chr3_2:64870832-64870851 Msa0417620:CDS 40.0%
ACCACTGTAAATATCTCCGT+CGG - chr3_2:64870860-64870879 None:intergenic 40.0%
GGTTACGGAAAGAAACGTTA+CGG + chr3_2:64870904-64870923 Msa0417620:CDS 40.0%
GGAAAGAAACGTTACGGTAA+CGG + chr3_2:64870910-64870929 Msa0417620:CDS 40.0%
ATGTTCAAGAAGGAAAAGGG+AGG + chr3_2:64870962-64870981 Msa0417620:CDS 40.0%
! AAGGAAAAGGGAGGTATGTT+TGG + chr3_2:64870971-64870990 Msa0417620:CDS 40.0%
! GGGAGGTATGTTTGGAAAAA+CGG + chr3_2:64870979-64870998 Msa0417620:CDS 40.0%
! GGAGGTATGTTTGGAAAAAC+GGG + chr3_2:64870980-64870999 Msa0417620:CDS 40.0%
!! AACGGTGTTATAAACGGAAG+AGG + chr3_2:64871027-64871046 Msa0417620:CDS 40.0%
GAACGCTTGTTTGGTTGAAT+GGG + chr3_2:64871049-64871068 Msa0417620:CDS 40.0%
GGAATCGTTATGAAGGTGAA+TGG + chr3_2:64871070-64871089 Msa0417620:CDS 40.0%
TATGAAGGTGAATGGGAGAA+TGG + chr3_2:64871078-64871097 Msa0417620:CDS 40.0%
GTAAACACACCTTGTCCTTT+GGG - chr3_2:64871108-64871127 None:intergenic 40.0%
AGTAAACACACCTTGTCCTT+TGG - chr3_2:64871109-64871128 None:intergenic 40.0%
AAGGACAAGGTGTGTTTACT+TGG + chr3_2:64871109-64871128 Msa0417620:CDS 40.0%
CTGATGGAAGTTGCTATGTT+GGG + chr3_2:64871133-64871152 Msa0417620:CDS 40.0%
GAAGTTGCTATGTTGGGAAT+TGG + chr3_2:64871139-64871158 Msa0417620:CDS 40.0%
!! ATGATTTTGCTGTGACGATG+AGG + chr3_2:64871220-64871239 Msa0417620:CDS 40.0%
!! GTGTTTTGTTGAAGGTGGAA+AGG + chr3_2:64871248-64871267 Msa0417620:CDS 40.0%
! GTTGAAGGTGGAAAGGATTT+TGG + chr3_2:64871255-64871274 Msa0417620:CDS 40.0%
TGGGAATCTGATGGAGAAAA+AGG + chr3_2:64871291-64871310 Msa0417620:CDS 40.0%
!! GTATCGGTGTTGAATAGGAT+TGG + chr3_2:64871342-64871361 Msa0417620:CDS 40.0%
!! TGTTTCTGAGGTTAAGAGAC+CGG + chr3_2:64871425-64871444 Msa0417620:CDS 40.0%
ACCGGGTGAAACTATATGTA+AGG + chr3_2:64871443-64871462 Msa0417620:CDS 40.0%
CCCTTACATATAGTTTCACC+CGG - chr3_2:64871447-64871466 None:intergenic 40.0%
CCGGGTGAAACTATATGTAA+GGG + chr3_2:64871444-64871463 Msa0417620:CDS 40.0%
CGGGTGAAACTATATGTAAG+GGG + chr3_2:64871445-64871464 Msa0417620:CDS 40.0%
TGTATTTGTAGGCACTCTGT+TGG + chr3_2:64871600-64871619 Msa0417620:intron 40.0%
! GCAACATTTGATTTCGTCGA+AGG + chr3_2:64871838-64871857 Msa0417620:intron 40.0%
TGGTCAGCCTAATTAACACA+AGG + chr3_2:64871915-64871934 Msa0417620:intron 40.0%
ACAATTGAGGAAGCGATTTC+AGG + chr3_2:64871966-64871985 Msa0417620:CDS 40.0%
!! CCGAAGTCAAGGTTTGTTTT+TGG + chr3_2:64872121-64872140 Msa0417620:intron 40.0%
CATTGTGTCAAACCAATTGG+AGG + chr3_2:64872314-64872333 Msa0417620:CDS 40.0%
! TTCAACAAAGGCATACCTTC+TGG - chr3_2:64872340-64872359 None:intergenic 40.0%
!!! GATGGGCAATCTTTTTTGCT+CGG + chr3_2:64872448-64872467 Msa0417620:CDS 40.0%
AAGTCAAATCGCCTATGGAT+TGG - chr3_2:64872479-64872498 None:intergenic 40.0%
!! CATAGGCGATTTGACTTGAA+GGG + chr3_2:64872482-64872501 Msa0417620:CDS 40.0%
ATTGAGATCGAGGTCTTTGA+GGG - chr3_2:64872564-64872583 None:intergenic 40.0%
AATTGAGATCGAGGTCTTTG+AGG - chr3_2:64872565-64872584 None:intergenic 40.0%
TGTTTCGCCTGCAAAGAAAT+TGG + chr3_2:64872588-64872607 Msa0417620:CDS 40.0%
ACAATCCCTCTCAATTTGTC+TGG - chr3_2:64872721-64872740 None:intergenic 40.0%
!!! TCACCATTTTTTTTGCGCAC+TGG + chr3_2:64872831-64872850 Msa0417620:CDS 40.0%
GTACCAGTGCGCAAAAAAAA+TGG - chr3_2:64872837-64872856 None:intergenic 40.0%
CAGAGTGAAAAGTTTATGCG+TGG + chr3_2:64872963-64872982 Msa0417620:CDS 40.0%
CACCACATCCATAGTTTAAG+TGG + chr3_2:64873109-64873128 Msa0417620:intron 40.0%
ACCCACTTAAACTATGGATG+TGG - chr3_2:64873114-64873133 None:intergenic 40.0%
TACAGCATCTCACTCCTTTA+AGG - chr3_2:64873221-64873240 None:intergenic 40.0%
TTAAAGGAGTGAGATGCTGT+AGG + chr3_2:64873220-64873239 Msa0417620:intron 40.0%
TAGGTGGGAATAATGTAGAG+CGG + chr3_2:64873410-64873429 Msa0417620:intron 40.0%
GAATAATGTAGAGCGGGAAA+CGG + chr3_2:64873417-64873436 Msa0417620:intron 40.0%
ATTAATTAGGACCACGACCT+GGG - chr3_2:64873460-64873479 None:intergenic 40.0%
AATTAATTAGGACCACGACC+TGG - chr3_2:64873461-64873480 None:intergenic 40.0%
TTTGACCAATACACCAGTCT+TGG + chr3_2:64873751-64873770 Msa0417620:CDS 40.0%
TTGACCAATACACCAGTCTT+GGG + chr3_2:64873752-64873771 Msa0417620:CDS 40.0%
CAATGCGACAAGGAGTAAAA+TGG - chr3_2:64873783-64873802 None:intergenic 40.0%
! CATTTTACTCCTTGTCGCAT+TGG + chr3_2:64873781-64873800 Msa0417620:CDS 40.0%
! TTTTACTCCTTGTCGCATTG+GGG + chr3_2:64873783-64873802 Msa0417620:CDS 40.0%
!! CGAGTAAAGCTTTGGATCAA+CGG - chr3_2:64873926-64873945 None:intergenic 40.0%
ATCCAAAGCTTTACTCGAAG+AGG + chr3_2:64873929-64873948 Msa0417620:CDS 40.0%
AACCTCTTCGAGTAAAGCTT+TGG - chr3_2:64873934-64873953 None:intergenic 40.0%
AAGAGGTTTCGTGATTTCGT+GGG + chr3_2:64873946-64873965 Msa0417620:CDS 40.0%
TGTTTCATACTCGATGCTAC+CGG - chr3_2:64873990-64874009 None:intergenic 40.0%
! AGAGAGCTCGAAATTGATTC+GGG + chr3_2:64874079-64874098 Msa0417620:three_prime_UTR 40.0%
!! ATTGATTCGGGTGTTGGAAT+TGG + chr3_2:64874091-64874110 Msa0417620:three_prime_UTR 40.0%
ACTGTTCGATTAACAGGCTA+TGG + chr3_2:64874128-64874147 Msa0417620:three_prime_UTR 40.0%
CCTTCAGTGAACCATCATTA+TGG - chr3_2:64874195-64874214 None:intergenic 40.0%
CCATAATGATGGTTCACTGA+AGG + chr3_2:64874192-64874211 Msa0417620:three_prime_UTR 40.0%
AATCTACACATCCCAACCAA+TGG - chr3_2:64874280-64874299 None:intergenic 40.0%
GTTGGGATGTGTAGATTCTT+TGG + chr3_2:64874283-64874302 Msa0417620:three_prime_UTR 40.0%
! AAGTAAAGTATCCGCGCATT+TGG - chr3_2:64874391-64874410 None:intergenic 40.0%
AAATGCGCGGATACTTTACT+TGG + chr3_2:64874390-64874409 Msa0417620:three_prime_UTR 40.0%
! AGAGAGAGGTGCATAGTGAT+TGG - chr3_2:64870198-64870217 None:intergenic 45.0%
! TTATTGATGGCTGGCTAGCT+CGG - chr3_2:64870275-64870294 None:intergenic 45.0%
!! AGGAGAGGAAAGTGTTGTGT+TGG - chr3_2:64870417-64870436 None:intergenic 45.0%
!!! TTTTTTTCCGGCAAGAGGAG+AGG - chr3_2:64870432-64870451 None:intergenic 45.0%
ACCCAACGGTGATTCTTACA+TGG + chr3_2:64870645-64870664 Msa0417620:CDS 45.0%
CCCATGTAAGAATCACCGTT+GGG - chr3_2:64870649-64870668 None:intergenic 45.0%
CCCAACGGTGATTCTTACAT+GGG + chr3_2:64870646-64870665 Msa0417620:CDS 45.0%
TCCCATGTAAGAATCACCGT+TGG - chr3_2:64870650-64870669 None:intergenic 45.0%
AACAACACACCAAACGGATC+AGG + chr3_2:64870682-64870701 Msa0417620:CDS 45.0%
TACGAAGGTGAATGGAAACG+AGG + chr3_2:64870733-64870752 Msa0417620:CDS 45.0%
TGGAAACGAGGTAAAGCTTC+CGG + chr3_2:64870745-64870764 Msa0417620:CDS 45.0%
CCGGAAATGGAAAATTCTCG+TGG + chr3_2:64870764-64870783 Msa0417620:CDS 45.0%
! GGAACTTTTACTGGATCCGA+CGG + chr3_2:64870841-64870860 Msa0417620:CDS 45.0%
TCCGACGGAGATATTTACAG+TGG + chr3_2:64870856-64870875 Msa0417620:CDS 45.0%
GGAACGCTTGTTTGGTTGAA+TGG + chr3_2:64871048-64871067 Msa0417620:CDS 45.0%
AATGGTGTTCCCAAAGGACA+AGG + chr3_2:64871096-64871115 Msa0417620:CDS 45.0%
CCAACATAGCAACTTCCATC+AGG - chr3_2:64871135-64871154 None:intergenic 45.0%
CCTGATGGAAGTTGCTATGT+TGG + chr3_2:64871132-64871151 Msa0417620:CDS 45.0%
GTCACAGCAAAATCATCACC+AGG - chr3_2:64871216-64871235 None:intergenic 45.0%
TTGCTGTGACGATGAGGAAA+AGG + chr3_2:64871226-64871245 Msa0417620:CDS 45.0%
!! TCGGTGTTGAATAGGATTGG+AGG + chr3_2:64871345-64871364 Msa0417620:CDS 45.0%
AAGCAGTTTCGACGGAATTC+TGG + chr3_2:64871396-64871415 Msa0417620:CDS 45.0%
!! GTTTCTGAGGTTAAGAGACC+GGG + chr3_2:64871426-64871445 Msa0417620:CDS 45.0%
TTGTAGGCACTCTGTTGGAA+AGG + chr3_2:64871605-64871624 Msa0417620:intron 45.0%
! TGGACTAGGTTTCCTTCTGA+AGG + chr3_2:64871684-64871703 Msa0417620:CDS 45.0%
! AACTCCATCGATTGATGTGG+TGG - chr3_2:64871723-64871742 None:intergenic 45.0%
ATCAATCGATGGAGTTCCGT+TGG + chr3_2:64871727-64871746 Msa0417620:CDS 45.0%
TAGGGCAGTAATCCTTCCAA+CGG - chr3_2:64871746-64871765 None:intergenic 45.0%
TTGGAAGGATTACTGCCCTA+TGG + chr3_2:64871746-64871765 Msa0417620:CDS 45.0%
ATTGAGGAAGCGATTTCAGG+TGG + chr3_2:64871969-64871988 Msa0417620:CDS 45.0%
CTTTCATCTCCTGGCAAAAG+TGG + chr3_2:64872042-64872061 Msa0417620:CDS 45.0%
!! AAGAAGCTTCCACTTTTGCC+AGG - chr3_2:64872054-64872073 None:intergenic 45.0%
GGGTTTAGTCTACGATTTGC+AGG + chr3_2:64872381-64872400 Msa0417620:intron 45.0%
GCTCGGAATATCCAATCCAT+AGG + chr3_2:64872465-64872484 Msa0417620:CDS 45.0%
CCTTCAAGTCAAATCGCCTA+TGG - chr3_2:64872484-64872503 None:intergenic 45.0%
!! CCATAGGCGATTTGACTTGA+AGG + chr3_2:64872481-64872500 Msa0417620:CDS 45.0%
! TGAGAGGGATTGTGCGTTTT+TGG + chr3_2:64872728-64872747 Msa0417620:CDS 45.0%
!! TGTGCGTTTTTGGAAGCTGA+AGG + chr3_2:64872738-64872757 Msa0417620:CDS 45.0%
! TGTCTTGTAGCTCTGCTTCA+AGG - chr3_2:64872998-64873017 None:intergenic 45.0%
TTGAAGCAGAGCTACAAGAC+AGG + chr3_2:64872997-64873016 Msa0417620:CDS 45.0%
TGAAGCAGAGCTACAAGACA+GGG + chr3_2:64872998-64873017 Msa0417620:CDS 45.0%
GACAGGGATAGAGTCAAATC+TGG + chr3_2:64873014-64873033 Msa0417620:CDS 45.0%
TGATACAAGCCTCTCTTCTC+AGG - chr3_2:64873191-64873210 None:intergenic 45.0%
AGGTGGGAATAATGTAGAGC+GGG + chr3_2:64873411-64873430 Msa0417620:intron 45.0%
TCATCCCAAGACTGGTGTAT+TGG - chr3_2:64873759-64873778 None:intergenic 45.0%
AAAATGGCTCATCCCAAGAC+TGG - chr3_2:64873767-64873786 None:intergenic 45.0%
TTACGACATCAGCAAGAAGC+TGG + chr3_2:64873855-64873874 Msa0417620:CDS 45.0%
CAACGGCTGAGATTGATGAA+GGG - chr3_2:64873909-64873928 None:intergenic 45.0%
TCAACGGCTGAGATTGATGA+AGG - chr3_2:64873910-64873929 None:intergenic 45.0%
GAAGAGGTTTCGTGATTTCG+TGG + chr3_2:64873945-64873964 Msa0417620:CDS 45.0%
AGAGGTTTCGTGATTTCGTG+GGG + chr3_2:64873947-64873966 Msa0417620:CDS 45.0%
CAATTTCGAGCTCTCTTTCC+TGG - chr3_2:64874075-64874094 None:intergenic 45.0%
!! CTCGAAATTGATTCGGGTGT+TGG + chr3_2:64874085-64874104 Msa0417620:three_prime_UTR 45.0%
ATGATGGTTCACTGAAGGCA+AGG + chr3_2:64874197-64874216 Msa0417620:three_prime_UTR 45.0%
TGATGGTTCACTGAAGGCAA+GGG + chr3_2:64874198-64874217 Msa0417620:three_prime_UTR 45.0%
AGCTCGGAAAAGAAGCCAGA+AGG - chr3_2:64870259-64870278 None:intergenic 50.0%
ACACTTTCCTCTCCTCTTGC+CGG + chr3_2:64870422-64870441 Msa0417620:five_prime_UTR 50.0%
TCCGGCAACAACACACCAAA+CGG + chr3_2:64870676-64870695 Msa0417620:CDS 50.0%
!! TCCGTTTGGTGTGTTGTTGC+CGG - chr3_2:64870680-64870699 None:intergenic 50.0%
CGAGGTAAAGCTTCCGGAAA+TGG + chr3_2:64870751-64870770 Msa0417620:CDS 50.0%
GGAAAATTCTCGTGGCCTTC+AGG + chr3_2:64870772-64870791 Msa0417620:CDS 50.0%
ACGGAAGAGGAACGCTTGTT+TGG + chr3_2:64871040-64871059 Msa0417620:CDS 50.0%
TGGGAGAATGGTGTTCCCAA+AGG + chr3_2:64871090-64871109 Msa0417620:CDS 50.0%
GGTGTGTTTACTTGGCCTGA+TGG + chr3_2:64871117-64871136 Msa0417620:CDS 50.0%
TACGCCACCACATCAATCGA+TGG + chr3_2:64871716-64871735 Msa0417620:CDS 50.0%
! CGGAACTCCATCGATTGATG+TGG - chr3_2:64871726-64871745 None:intergenic 50.0%
ATCGATGGAGTTCCGTTGGA+AGG + chr3_2:64871731-64871750 Msa0417620:CDS 50.0%
TTTGTGGAAATGCTGCCCTC+AGG + chr3_2:64872016-64872035 Msa0417620:CDS 50.0%
TTGTGGAAATGCTGCCCTCA+GGG + chr3_2:64872017-64872036 Msa0417620:CDS 50.0%
AGGAGATGAAAGCTCCCTGA+GGG - chr3_2:64872034-64872053 None:intergenic 50.0%
CAAACCAATTGGAGGCCAGA+AGG + chr3_2:64872322-64872341 Msa0417620:CDS 50.0%
CATACCTTCTGGCCTCCAAT+TGG - chr3_2:64872329-64872348 None:intergenic 50.0%
ATTGCCCATCACGATGAACC+GGG - chr3_2:64872438-64872457 None:intergenic 50.0%
GATTGCCCATCACGATGAAC+CGG - chr3_2:64872439-64872458 None:intergenic 50.0%
GACTTGAAGGGATCGTCACA+TGG + chr3_2:64872494-64872513 Msa0417620:CDS 50.0%
GGGATAGAGTCAAATCTGGC+CGG + chr3_2:64873018-64873037 Msa0417620:CDS 50.0%
GTCGAAGAACCTGAGAAGAG+AGG + chr3_2:64873179-64873198 Msa0417620:intron 50.0%
AGCGGGAAACGGTTGTTTGT+GGG + chr3_2:64873428-64873447 Msa0417620:intron 50.0%
TGCATAGCTGCAGCTCTGTT+TGG + chr3_2:64873598-64873617 Msa0417620:intron 50.0%
GCATAGCTGCAGCTCTGTTT+GGG + chr3_2:64873599-64873618 Msa0417620:intron 50.0%
TGCAGCTCTGTTTGGGAGTA+AGG + chr3_2:64873606-64873625 Msa0417620:intron 50.0%
GCATGCATACAAGTCACTGC+AGG + chr3_2:64873879-64873898 Msa0417620:CDS 50.0%
GGAGAATATTCAGCGAGGAC+CGG + chr3_2:64873968-64873987 Msa0417620:CDS 50.0%
GAAACCGGAATCCAAATGCG+CGG + chr3_2:64874377-64874396 Msa0417620:three_prime_UTR 50.0%
GTATCCGCGCATTTGGATTC+CGG - chr3_2:64874384-64874403 None:intergenic 50.0%
TGCTGAAGTGTGACCGGGTA+CGG - chr3_2:64870555-64870574 None:intergenic 55.0%
CAGGAGATGAAAGCTCCCTG+AGG - chr3_2:64872035-64872054 None:intergenic 55.0%
CTCAGGGAGCTTTCATCTCC+TGG + chr3_2:64872033-64872052 Msa0417620:CDS 55.0%
ACAGACCCGGTTCATCGTGA+TGG + chr3_2:64872430-64872449 Msa0417620:intron 55.0%
CAGACCCGGTTCATCGTGAT+GGG + chr3_2:64872431-64872450 Msa0417620:intron 55.0%
! GAGATCGAGGTCTTTGAGGG+TGG - chr3_2:64872561-64872580 None:intergenic 55.0%
GAGCGGGAAACGGTTGTTTG+TGG + chr3_2:64873427-64873446 Msa0417620:intron 55.0%
GCGGGAAACGGTTGTTTGTG+GGG + chr3_2:64873429-64873448 Msa0417620:intron 55.0%
CGGGAAACGGTTGTTTGTGG+GGG + chr3_2:64873430-64873449 Msa0417620:intron 55.0%
! TTGTTTGTGGGGGCATACCC+AGG + chr3_2:64873440-64873459 Msa0417620:intron 55.0%
TAGGTCTCCCCAATGCGACA+AGG - chr3_2:64873793-64873812 None:intergenic 55.0%
CGTGGGGAGAATATTCAGCG+AGG + chr3_2:64873963-64873982 Msa0417620:CDS 55.0%
CTCCTCAGATTCACAGCCGC+CGG + chr3_2:64870516-64870535 Msa0417620:CDS 60.0%
AACCGGCGGCTGTGAATCTG+AGG - chr3_2:64870521-64870540 None:intergenic 60.0%
TCCGGCTGCTGAAGTGTGAC+CGG - chr3_2:64870561-64870580 None:intergenic 60.0%
CAAGAGCAGAGCGCATGGCT+CGG + chr3_2:64873719-64873738 Msa0417620:CDS 60.0%
CGGCGGCTGTGAATCTGAGG+AGG - chr3_2:64870518-64870537 None:intergenic 65.0%
GTACGGCCGGTGGTAGCAAC+CGG - chr3_2:64870538-64870557 None:intergenic 65.0%
TTGCTACCACCGGCCGTACC+CGG + chr3_2:64870539-64870558 Msa0417620:CDS 65.0%
GAAGTGTGACCGGGTACGGC+CGG - chr3_2:64870551-64870570 None:intergenic 65.0%
CCGGCTGCTGAAGTGTGACC+GGG - chr3_2:64870560-64870579 None:intergenic 65.0%
CCCGGTCACACTTCAGCAGC+CGG + chr3_2:64870557-64870576 Msa0417620:CDS 65.0%
GCCAGCAAGAGCAGAGCGCA+TGG + chr3_2:64873714-64873733 Msa0417620:CDS 65.0%
GCCATGCGCTCTGCTCTTGC+TGG - chr3_2:64873718-64873737 None:intergenic 65.0%
! CAGCCGCCGGTTGCTACCAC+CGG + chr3_2:64870529-64870548 Msa0417620:CDS 70.0%
! GTGGGGGCATACCCAGGTCG+TGG + chr3_2:64873446-64873465 Msa0417620:intron 70.0%
! GAGCAGAGCGCATGGCTCGG+AGG + chr3_2:64873722-64873741 Msa0417620:CDS 70.0%
CGGCCGGTGGTAGCAACCGG+CGG - chr3_2:64870535-64870554 None:intergenic 75.0%
GTGTGACCGGGTACGGCCGG+TGG - chr3_2:64870548-64870567 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 64870172 64874460 64870172 ID=Msa0417620;Name=Msa0417620
chr3_2 mRNA 64870172 64874460 64870172 ID=Msa0417620-mRNA-1;Parent=Msa0417620;Name=Msa0417620-mRNA-1;_AED=0.07;_eAED=0.07;_QI=284|1|1|1|0.87|0.77|9|467|733
chr3_2 exon 64870172 64870249 64870172 ID=Msa0417620-mRNA-1:exon:14452;Parent=Msa0417620-mRNA-1
chr3_2 exon 64870275 64871511 64870275 ID=Msa0417620-mRNA-1:exon:14453;Parent=Msa0417620-mRNA-1
chr3_2 exon 64871611 64871775 64871611 ID=Msa0417620-mRNA-1:exon:14454;Parent=Msa0417620-mRNA-1
chr3_2 exon 64871966 64872131 64871966 ID=Msa0417620-mRNA-1:exon:14455;Parent=Msa0417620-mRNA-1
chr3_2 exon 64872233 64872343 64872233 ID=Msa0417620-mRNA-1:exon:14456;Parent=Msa0417620-mRNA-1
chr3_2 exon 64872434 64872627 64872434 ID=Msa0417620-mRNA-1:exon:14457;Parent=Msa0417620-mRNA-1
chr3_2 exon 64872722 64872852 64872722 ID=Msa0417620-mRNA-1:exon:14458;Parent=Msa0417620-mRNA-1
chr3_2 exon 64872946 64873039 64872946 ID=Msa0417620-mRNA-1:exon:14459;Parent=Msa0417620-mRNA-1
chr3_2 exon 64873684 64874460 64873684 ID=Msa0417620-mRNA-1:exon:14460;Parent=Msa0417620-mRNA-1
chr3_2 five_prime_UTR 64870172 64870249 64870172 ID=Msa0417620-mRNA-1:five_prime_utr;Parent=Msa0417620-mRNA-1
chr3_2 five_prime_UTR 64870275 64870480 64870275 ID=Msa0417620-mRNA-1:five_prime_utr;Parent=Msa0417620-mRNA-1
chr3_2 CDS 64870481 64871511 64870481 ID=Msa0417620-mRNA-1:cds;Parent=Msa0417620-mRNA-1
chr3_2 CDS 64871611 64871775 64871611 ID=Msa0417620-mRNA-1:cds;Parent=Msa0417620-mRNA-1
chr3_2 CDS 64871966 64872131 64871966 ID=Msa0417620-mRNA-1:cds;Parent=Msa0417620-mRNA-1
chr3_2 CDS 64872233 64872343 64872233 ID=Msa0417620-mRNA-1:cds;Parent=Msa0417620-mRNA-1
chr3_2 CDS 64872434 64872627 64872434 ID=Msa0417620-mRNA-1:cds;Parent=Msa0417620-mRNA-1
chr3_2 CDS 64872722 64872852 64872722 ID=Msa0417620-mRNA-1:cds;Parent=Msa0417620-mRNA-1
chr3_2 CDS 64872946 64873039 64872946 ID=Msa0417620-mRNA-1:cds;Parent=Msa0417620-mRNA-1
chr3_2 CDS 64873684 64873993 64873684 ID=Msa0417620-mRNA-1:cds;Parent=Msa0417620-mRNA-1
chr3_2 three_prime_UTR 64873994 64874460 64873994 ID=Msa0417620-mRNA-1:three_prime_utr;Parent=Msa0417620-mRNA-1
Gene Sequence

>Msa0417620

ATGCGTCAATCACTTCTCTCTAATCACAACAACACCTCCTCAGATTCACAGCCGCCGGTTGCTACCACCGGCCGTACCCGGTCACACTTCAGCAGCCGGAAAATCTCACCTACAAGCATAACAATCGAATTCGAAAAAACCAAAAGAACCGCGAAAAAGCATTTACCCAACGGTGATTCTTACATGGGAACTTTCTCCGGCAACAACACACCAAACGGATCAGGAAAATACAAATGGAACGATGGTTGTATCTACGAAGGTGAATGGAAACGAGGTAAAGCTTCCGGAAATGGAAAATTCTCGTGGCCTTCAGGATCTATTTACGAAGGCGAGTTTAAGTTAGGTAAAATGGAAGGTTCTGGAACTTTTACTGGATCCGACGGAGATATTTACAGTGGTTCATGGAGTTCCGATAGAAAAAACGGTTACGGAAAGAAACGTTACGGTAACGGAGATTATTATGAAGGTTGGTGGAAGAAGAATGTTCAAGAAGGAAAAGGGAGGTATGTTTGGAAAAACGGGAATGAGTATATTGGTGAATGGAAGAACGGTGTTATAAACGGAAGAGGAACGCTTGTTTGGTTGAATGGGAATCGTTATGAAGGTGAATGGGAGAATGGTGTTCCCAAAGGACAAGGTGTGTTTACTTGGCCTGATGGAAGTTGCTATGTTGGGAATTGGAATAATAATAATAATGATTTTCAATCTTCTTTATTGAATGGGAGTTTTTATCCTGGTGATGATTTTGCTGTGACGATGAGGAAAAGGTGTTTTGTTGAAGGTGGAAAGGATTTTGGGAAGATTTGTATATGGGAATCTGATGGAGAAAAAGGTGATATAACTTGTGATATTGTTGATAATGTATCGGTGTTGAATAGGATTGGAGGTGAAAGTGTTTCAGATCCGAAAGAGATTAAGCAGTTTCGACGGAATTCTGGTTGTTTTGTTTCTGAGGTTAAGAGACCGGGTGAAACTATATGTAAGGGGCATAAGAATTATGATCTTATGCTTAATCTTCAATTGGGTATAAGGCACTCTGTTGGAAAGGAAGCTTCTATATCGAGAGAGCTAATACCAAGTGATTTTGATTTGAAGGAGAAATTTTGGACTAGGTTTCCTTCTGAAGGATCTAAGATTACGCCACCACATCAATCGATGGAGTTCCGTTGGAAGGATTACTGCCCTATGGTTTTTAGACAATTGAGGAAGCGATTTCAGGTGGATCCTGCTGATTACATGTTAGCTATTTGTGGAAATGCTGCCCTCAGGGAGCTTTCATCTCCTGGCAAAAGTGGAAGCTTCTTCTACTTGACCCAAGATGACAGATTTATGATTAAGACAGTGAAAAAATCCGAAGTCAAGGTACTTCTTCGGATGCTTCGAAGTTATTACGAACATGTTTCTCAATATGAGGATTCACTTGTGACAAAATTCTATGGGGTACATTGTGTCAAACCAATTGGAGGCCAGAAGACCCGGTTCATCGTGATGGGCAATCTTTTTTGCTCGGAATATCCAATCCATAGGCGATTTGACTTGAAGGGATCGTCACATGGCCGTATGACAGATAAGACTGAAGATGAAATTGATGAAACTACCACCCTCAAAGACCTCGATCTCAATTTTGTGTTTCGCCTGCAAAGAAATTGGTTCAAAGATCTCATCACACAAATTGAGAGGGATTGTGCGTTTTTGGAAGCTGAAGGAATTATGGATTACAGTCTTTTGGTCGGCGTTCATTTTCGTGATGATAATACTTGTGACAAAATGGGATTATCACCATTTTTTTTGCGCACTGGAAAGCATGACTCTTATCAGAGTGAAAAGTTTATGCGTGGTTATCGCTTCCTTGAAGCAGAGCTACAAGACAGGGATAGAGTCAAATCTGGCCGGAAATCATTGATTAGGTTAGGAGCAAATATGCCAGCAAGAGCAGAGCGCATGGCTCGGAGGAGTGATTTTGACCAATACACCAGTCTTGGGATGAGCCATTTTACTCCTTGTCGCATTGGGGAGACCTATGATGTTGTTCTATATTTTGGGATTATAGACATTTTGCAAGATTACGACATCAGCAAGAAGCTGGAGCATGCATACAAGTCACTGCAGGTTGACCCTTCATCAATCTCAGCCGTTGATCCAAAGCTTTACTCGAAGAGGTTTCGTGATTTCGTGGGGAGAATATTCAGCGAGGACCGGTAG
Protein sequence

>Msa0417620

MRQSLLSNHNNTSSDSQPPVATTGRTRSHFSSRKISPTSITIEFEKTKRTAKKHLPNGDSYMGTFSGNNTPNGSGKYKWNDGCIYEGEWKRGKASGNGKFSWPSGSIYEGEFKLGKMEGSGTFTGSDGDIYSGSWSSDRKNGYGKKRYGNGDYYEGWWKKNVQEGKGRYVWKNGNEYIGEWKNGVINGRGTLVWLNGNRYEGEWENGVPKGQGVFTWPDGSCYVGNWNNNNNDFQSSLLNGSFYPGDDFAVTMRKRCFVEGGKDFGKICIWESDGEKGDITCDIVDNVSVLNRIGGESVSDPKEIKQFRRNSGCFVSEVKRPGETICKGHKNYDLMLNLQLGIRHSVGKEASISRELIPSDFDLKEKFWTRFPSEGSKITPPHQSMEFRWKDYCPMVFRQLRKRFQVDPADYMLAICGNAALRELSSPGKSGSFFYLTQDDRFMIKTVKKSEVKVLLRMLRSYYEHVSQYEDSLVTKFYGVHCVKPIGGQKTRFIVMGNLFCSEYPIHRRFDLKGSSHGRMTDKTEDEIDETTTLKDLDLNFVFRLQRNWFKDLITQIERDCAFLEAEGIMDYSLLVGVHFRDDNTCDKMGLSPFFLRTGKHDSYQSEKFMRGYRFLEAELQDRDRVKSGRKSLIRLGANMPARAERMARRSDFDQYTSLGMSHFTPCRIGETYDVVLYFGIIDILQDYDISKKLEHAYKSLQVDPSSISAVDPKLYSKRFRDFVGRIFSEDR*