AlfalfaGEDB | Msa0418700

M. sativa cultivar zhongmu-4 / Msa0418700

KEGG: -
GO: GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005829 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009570 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0418700	XP_013460940.1	98.802	668	7	1	1	667	1	668	0.0	1349

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0418700	sp\|F4JF21\|PTA10_ARATH	71.452	613	162	4	1	606	1	607	0.0	901

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0418700	A0A072UYW5	98.802	668	7	1	1	667	1	668	0.0	1349

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0418430	Msa0418700	0.800650	1.304809e-48	-8.615850e-47
Msa0418700	Msa0571610	0.816358	5.763630e-52	-8.615850e-47
Msa0418700	Msa0630990	0.802268	6.082209e-49	-8.615850e-47
Msa0418700	Msa0657050	0.803869	2.837369e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0418700	MtrunA17_Chr3g0116321	98.802	668	7	1	1	667	1	668	0.0	1349

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0418700	AT3G48500.1	71.452	613	162	4	1	606	1	607	0.0	901
Msa0418700	AT3G48500.2	68.224	642	162	5	1	606	1	636	0.0	885

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Find 198 sgRNAs with CRISPR-Local

Find 889 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGAAGAGATAAGAATT+GGG	0.395883	3_2:+66525041	None:intergenic
AAATGAAACTGTATCTGTCT+CGG	0.528303	3_2:-66513495	Msa0418700:three_prime_UTR
AACAAATCAATTGTGGGCAA+GGG	0.585346	3_2:-66513869	Msa0418700:CDS
AACCAATCATTGTTCTTTAT+AGG	0.253075	3_2:+66522665	None:intergenic
AACGAAGTTCGATCGGGAAC+CGG	0.411671	3_2:+66521797	None:intergenic
AACTTTGCATCTCTATCAAG+GGG	0.623804	3_2:-66523401	Msa0418700:CDS
AAGAAGAAGATTGAGGAAAT+GGG	0.426271	3_2:-66524681	Msa0418700:CDS
AAGATTATCACCCTGGTAGG+AGG	0.561735	3_2:-66524212	Msa0418700:CDS
AAGTGAAGAGATAAGAATTG+GGG	0.569311	3_2:+66525042	None:intergenic
AAGTGTTAAAGAGCTGGACT+TGG	0.522508	3_2:-66514734	Msa0418700:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTGAAGAGATAAGAATTG+GGG	+	chr3_2:66513526-66513545	None:intergenic	30.0%
GAAAGTGAAGAGATAAGAAT+TGG	+	chr3_2:66513528-66513547	None:intergenic	30.0%
AAGAAGAAGATTGAGGAAAT+GGG	-	chr3_2:66513884-66513903	Msa0418700:CDS	30.0%
GGAAGCTAATAAGGATTTAT+TGG	-	chr3_2:66514198-66514217	Msa0418700:CDS	30.0%
ATTGGAAGAGGAATCTTATA+AGG	-	chr3_2:66514216-66514235	Msa0418700:CDS	30.0%
GAATTGTGAAATAGCTTACT+TGG	+	chr3_2:66514542-66514561	None:intergenic	30.0%
GTTTCGAATTACTGCTATTA+TGG	-	chr3_2:66514688-66514707	Msa0418700:intron	30.0%
TAACCGAATTTACCCTTTAA+TGG	-	chr3_2:66514892-66514911	Msa0418700:intron	30.0%
CTTCCATTAAAGGGTAAATT+CGG	+	chr3_2:66514898-66514917	None:intergenic	30.0%
CAAATACAGTTGTCCAATTA+GGG	+	chr3_2:66514972-66514991	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	66513470	66525117	66513470	ID=Msa0418700;Name=Msa0418700
chr3_2	mRNA	66513470	66525117	66513470	ID=Msa0418700-mRNA-1;Parent=Msa0418700;Name=Msa0418700-mRNA-1;_AED=0.06;_eAED=0.06;_QI=42\|1\|1\|1\|0.91\|0.84\|13\|150\|667
chr3_2	exon	66513470	66513523	66513470	ID=Msa0418700-mRNA-1:exon:15318;Parent=Msa0418700-mRNA-1
chr3_2	exon	66513544	66514057	66513544	ID=Msa0418700-mRNA-1:exon:15317;Parent=Msa0418700-mRNA-1
chr3_2	exon	66514138	66514289	66514138	ID=Msa0418700-mRNA-1:exon:15316;Parent=Msa0418700-mRNA-1
chr3_2	exon	66514711	66514761	66514711	ID=Msa0418700-mRNA-1:exon:15315;Parent=Msa0418700-mRNA-1
chr3_2	exon	66517784	66517960	66517784	ID=Msa0418700-mRNA-1:exon:15314;Parent=Msa0418700-mRNA-1
chr3_2	exon	66521244	66521336	66521244	ID=Msa0418700-mRNA-1:exon:15313;Parent=Msa0418700-mRNA-1
chr3_2	exon	66521580	66521646	66521580	ID=Msa0418700-mRNA-1:exon:15312;Parent=Msa0418700-mRNA-1
chr3_2	exon	66521769	66521842	66521769	ID=Msa0418700-mRNA-1:exon:15311;Parent=Msa0418700-mRNA-1
chr3_2	exon	66522613	66522694	66522613	ID=Msa0418700-mRNA-1:exon:15310;Parent=Msa0418700-mRNA-1
chr3_2	exon	66523370	66523443	66523370	ID=Msa0418700-mRNA-1:exon:15309;Parent=Msa0418700-mRNA-1
chr3_2	exon	66524045	66524074	66524045	ID=Msa0418700-mRNA-1:exon:15308;Parent=Msa0418700-mRNA-1
chr3_2	exon	66524182	66524241	66524182	ID=Msa0418700-mRNA-1:exon:15307;Parent=Msa0418700-mRNA-1
chr3_2	exon	66524350	66525117	66524350	ID=Msa0418700-mRNA-1:exon:15306;Parent=Msa0418700-mRNA-1
chr3_2	five_prime_UTR	66525076	66525117	66525076	ID=Msa0418700-mRNA-1:five_prime_utr;Parent=Msa0418700-mRNA-1
chr3_2	CDS	66524350	66525075	66524350	ID=Msa0418700-mRNA-1:cds;Parent=Msa0418700-mRNA-1
chr3_2	CDS	66524182	66524241	66524182	ID=Msa0418700-mRNA-1:cds;Parent=Msa0418700-mRNA-1
chr3_2	CDS	66524045	66524074	66524045	ID=Msa0418700-mRNA-1:cds;Parent=Msa0418700-mRNA-1
chr3_2	CDS	66523370	66523443	66523370	ID=Msa0418700-mRNA-1:cds;Parent=Msa0418700-mRNA-1
chr3_2	CDS	66522613	66522694	66522613	ID=Msa0418700-mRNA-1:cds;Parent=Msa0418700-mRNA-1
chr3_2	CDS	66521769	66521842	66521769	ID=Msa0418700-mRNA-1:cds;Parent=Msa0418700-mRNA-1
chr3_2	CDS	66521580	66521646	66521580	ID=Msa0418700-mRNA-1:cds;Parent=Msa0418700-mRNA-1
chr3_2	CDS	66521244	66521336	66521244	ID=Msa0418700-mRNA-1:cds;Parent=Msa0418700-mRNA-1
chr3_2	CDS	66517784	66517960	66517784	ID=Msa0418700-mRNA-1:cds;Parent=Msa0418700-mRNA-1
chr3_2	CDS	66514711	66514761	66514711	ID=Msa0418700-mRNA-1:cds;Parent=Msa0418700-mRNA-1
chr3_2	CDS	66514138	66514289	66514138	ID=Msa0418700-mRNA-1:cds;Parent=Msa0418700-mRNA-1
chr3_2	CDS	66513640	66514057	66513640	ID=Msa0418700-mRNA-1:cds;Parent=Msa0418700-mRNA-1
chr3_2	three_prime_UTR	66513544	66513639	66513544	ID=Msa0418700-mRNA-1:three_prime_utr;Parent=Msa0418700-mRNA-1
chr3_2	three_prime_UTR	66513470	66513523	66513470	ID=Msa0418700-mRNA-1:three_prime_utr;Parent=Msa0418700-mRNA-1

Gene Sequence

>Msa0418700

ATGCAAGTCTTCCCCAATTCTTATCTCTTCACTTTCCCTAAACCCTTAAACCTTAAACCCTCTCCCTTATTCCACCGTCATCCACCACCTCTACTCCACCGCAAACCACCCCTCACCACCGTCGCTAAATCCTTCACCTCCGATGAATTCCCCGTCGACGAAACCTTCCTCCAAACCTTCGGCCCTAAAACCAAAGAATCCGAAGACGAAGCACGACGTCGCAACTGGATCGAACGCGGCTGGGCTCCATGGGAAGAGATTCTCACTCCTGAAGCTGAATTCGCGCGGACGAGTCTCAACGAAGGTGAAGAAGTTCCTCTGAGCTCACCGGAGTCGATTGAAGCTTTTAGAATGTTGAACCCTAGGTATAGGAAGAAGAAGATTGAGGAAATGGGAGTGACGGAAGAGGAGTATTTGGCGAAGCAGTTTGAGATCAAGGAAGATGTTCCGGAGGAGTTGGAGACTAAATGGGCAGGACCGTTGGTGGTGAAGTTGGTTCCGCCGAGGGATTGGCCTCCGAGAGGGTGGGAGGTGGATCGAGAAGAGCTCGCGTTTATTCGTGAAGCGCATAAGATGGAGGCGAAGAGAGTGAGGTTGGAGGATATTGAAAATGGTGTTAGAACTGAAACTGATGACGTGTGTTTGGATAGGTATAAGGTGTTTTTGAAACAGTATAATGAGTGGGTGGAAGCTAATAAGGATTTATTGGAAGAGGAATCTTATAAGTTAGACCAAGATTATCACCCTGGTAGGAGGAAAAGAGGCAAGGATTACAAGGATGGCATGTACGAGCTACCATTCTATTATCCTGGCCAAATTTGTGTGGGGAAGGTGACAACTTTGCATCTCTATCAAGGGGCATTTGTTGACATTGGTGGAGTATACGATGGGTGGGTTCCTATAAAGAACAATGATTGGTTTTGGATTCGCCATCACATAAAAGTGGGTATGACCGTCATTGTTGAAATTACGGCAAAGCGAGATCCTTATCGCTTCCGGTTCCCGATCGAACTTCGTTTTGTGGATCCAAATATAGATCATCTGATCTTTAACAGATTTGACTTCCCACCAATATTCCACCGTGACGAAGATACTAATCCAGATGAATTGCGGCGTGACTGTGGAAGGCCTCCTATTCCTAGAAAAGATCCAGGAGACAAGCCAGAGGAAGAACCTCTATTTTCTAATCACCCATATGTTGAAAAGTTGTGGCAGATTAATGTAGCTGAGCAAATGATTTTGAATGATATGGATATTAATCCTGATAAATATAAAGGCAAAAAGCTATCAGACTTGGTTGACGAAGATGATTTTGATGAAGAAAAATCAGTTCAGCAGACAAAAGTTCCTTATAAGAATGCATTAGTACCAAAAATAACTATGAAAACAAGTGTTAAAGAGCTGGACTTGGAGGCTGCACTTGCTGAGCGTGAGCTCCATAAGAAACTATGGAAGGAAGCAAAGGATAGAGGTGAGGACTACAAAATCACTACATTGAAGCGCAATATTGAGATGGATGAATATGATTTCATGCATTGGCGTAGATCATTTGAAGAAAGAGAAGCATTGATTAGAGACATCAGCTGTCGTAAAACTCTTGGTCTGCCATTGGAAGAGCCAGGAAGGTATGTTGATGCTAGTTTTTTTGGTAAAGACCAGTATGATGCTGAAAGTCCTCTGTATCGTTATGACTATTGGGGGGAACCCAAGAATTCAGAAAAGAGCAGGAAAGAGAGGATGACGGATACCCATAACAAATCAATTGTGGGCAAGGGTACTGTTTGGTGTGAAATGCCGTACGAAGACAGCGTAAAACATCAGTCAAAAGAAGTTGACGAGTATTCAAAGCAAGGTGAAGCTGCCGAAGAAGAAGAGGACGATGACGATGACGACGACTTTGACTTCAGCATTCTAAGCAGTCTTGGTACTAATGCCTCGGATCAAATTCATGTTAATGGGACTGAGACTTCTAGATTGTCAGATGACGGTGTGTTTGAGGACTGA

Protein sequence

>Msa0418700

MQVFPNSYLFTFPKPLNLKPSPLFHRHPPPLLHRKPPLTTVAKSFTSDEFPVDETFLQTFGPKTKESEDEARRRNWIERGWAPWEEILTPEAEFARTSLNEGEEVPLSSPESIEAFRMLNPRYRKKKIEEMGVTEEEYLAKQFEIKEDVPEELETKWAGPLVVKLVPPRDWPPRGWEVDREELAFIREAHKMEAKRVRLEDIENGVRTETDDVCLDRYKVFLKQYNEWVEANKDLLEEESYKLDQDYHPGRRKRGKDYKDGMYELPFYYPGQICVGKVTTLHLYQGAFVDIGGVYDGWVPIKNNDWFWIRHHIKVGMTVIVEITAKRDPYRFRFPIELRFVDPNIDHLIFNRFDFPPIFHRDEDTNPDELRRDCGRPPIPRKDPGDKPEEEPLFSNHPYVEKLWQINVAEQMILNDMDINPDKYKGKKLSDLVDEDDFDEEKSVQQTKVPYKNALVPKITMKTSVKELDLEAALAERELHKKLWKEAKDRGEDYKITTLKRNIEMDEYDFMHWRRSFEEREALIRDISCRKTLGLPLEEPGRYVDASFFGKDQYDAESPLYRYDYWGEPKNSEKSRKERMTDTHNKSIVGKGTVWCEMPYEDSVKHQSKEVDEYSKQGEAAEEEEDDDDDDDFDFSILSSLGTNASDQIHVNGTETSRLSDDGVFED*