AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0630990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0630990 MtrunA17_Chr4g0008441 95.085 468 17 1 1 468 1 462 0.0 929
Msa0630990 MtrunA17_Chr5g0419371 44.081 397 191 6 81 463 181 560 8.35e-112 341
Msa0630990 MtrunA17_Chr2g0329451 33.696 368 195 6 92 458 7 326 5.75e-55 186
Msa0630990 MtrunA17_Chr5g0434971 33.889 360 192 5 98 457 66 379 7.98e-53 182
Msa0630990 MtrunA17_Chr4g0033631 32.880 368 198 7 92 458 8 327 3.23e-51 176
Msa0630990 MtrunA17_Chr1g0188291 32.410 361 197 5 98 458 7 320 8.57e-51 175
Msa0630990 MtrunA17_Chr6g0474331 31.608 367 205 7 99 464 28 349 3.69e-48 169
Msa0630990 MtrunA17_Chr1g0204101 31.436 369 208 6 87 455 11 334 4.39e-48 168
Msa0630990 MtrunA17_Chr1g0171921 30.159 315 187 5 141 452 206 490 2.27e-33 132
Msa0630990 MtrunA17_Chr1g0183661 27.385 325 191 9 137 460 12 292 1.08e-27 112
Msa0630990 MtrunA17_Chr1g0183241 28.763 299 181 5 157 455 134 400 4.77e-27 112
Msa0630990 MtrunA17_Chr1g0177771 27.885 312 185 5 141 452 276 547 1.34e-26 112
Msa0630990 MtrunA17_Chr1g0177321 27.044 318 171 6 141 452 202 464 2.42e-24 105
Msa0630990 MtrunA17_Chr7g0246421 30.594 219 120 3 238 455 2 189 1.30e-22 95.1
Msa0630990 MtrunA17_Chr7g0246411 30.822 146 86 3 98 242 40 171 4.93e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0630990 AT3G54090.1 68.076 473 133 5 10 468 3 471 0.0 677
Msa0630990 AT1G69200.1 44.321 361 188 3 90 450 197 544 1.86e-104 324
Msa0630990 AT3G59480.1 33.609 363 188 5 99 458 10 322 1.76e-55 188
Msa0630990 AT2G31390.1 32.249 369 197 5 96 461 6 324 2.35e-55 187
Msa0630990 AT1G06030.1 34.417 369 194 7 95 462 7 328 6.67e-54 184
Msa0630990 AT1G06020.1 33.516 364 194 6 99 461 10 326 1.02e-53 184
Msa0630990 AT1G66430.1 31.206 423 221 9 36 456 22 376 1.75e-52 182
Msa0630990 AT4G10260.1 32.410 361 197 5 98 458 5 318 1.38e-47 167
Msa0630990 AT5G51830.2 31.868 364 203 6 95 458 19 337 2.10e-47 167
Msa0630990 AT5G51830.1 31.868 364 203 6 95 458 19 337 2.10e-47 167

Find 144 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGGTCTTCAAACATTTC+TGG 0.137316 4_3:-13494031 None:intergenic
TATACAAAACTTGTTTAATT+TGG 0.158941 4_3:+13494342 Msa0630990:three_prime_UTR
TTCCATTCTGTGTATATATC+TGG 0.195178 4_3:-13491361 None:intergenic
GTTTATTATGTATCCTTTCT+AGG 0.205801 4_3:+13494269 Msa0630990:three_prime_UTR
ATCCAAACCAGGTAATAAAA+TGG 0.214183 4_3:-13490891 None:intergenic
GTTTGGGGAGGAGATGGTTT+TGG 0.244152 4_3:+13491507 Msa0630990:CDS
GGCGGACGGGCGGCTTTGTT+GGG 0.248265 4_3:+13491466 Msa0630990:CDS
CGGCTTTGTTGGGGAAAGTT+GGG 0.250094 4_3:+13491476 Msa0630990:CDS
GTAATACTCTTGACGATTCT+TGG 0.268512 4_3:-13493795 None:intergenic
GTTTGAAGACCAAGATGTTT+TGG 0.272200 4_3:+13494039 Msa0630990:CDS
AAAGTTGGGGAAGATGAGTT+TGG 0.286600 4_3:+13491490 Msa0630990:CDS
GGGCGGACGGGCGGCTTTGT+TGG 0.290741 4_3:+13491465 Msa0630990:CDS
GTTTCTGTTGTGGAAGCTTT+AGG 0.294571 4_3:-13491133 None:intergenic
TGAAGTTTGATTCGGGGTTT+CGG 0.299143 4_3:+13491563 Msa0630990:CDS
AACAGAGTTGATTCCATAGA+AGG 0.303709 4_3:-13493539 None:intergenic
GAGGAAGAAGGAGAAGATTA+TGG 0.320107 4_3:-13491018 None:intergenic
AGTTCTAACATCCCCTTCTA+TGG 0.340037 4_3:+13493526 Msa0630990:CDS
TTTGATTCGGGGTTTCGGAC+TGG 0.341928 4_3:+13491568 Msa0630990:CDS
TGGACTATTGGTGGAGTTAG+AGG 0.347631 4_3:+13494106 Msa0630990:CDS
GCGGCTTTGTTGGGGAAAGT+TGG 0.356462 4_3:+13491475 Msa0630990:CDS
TTTGCTACTTTCAAGTTTGA+AGG 0.360448 4_3:-13490834 None:intergenic
TTAGAACTTCTGAATTGAAA+TGG 0.361898 4_3:-13493511 None:intergenic
AAGTTGGGGAAGATGAGTTT+GGG 0.364967 4_3:+13491491 Msa0630990:CDS
TTGTTCCATCGGTCACAAAA+AGG 0.367248 4_3:-13493868 None:intergenic
TTGATTCGGGGTTTCGGACT+GGG 0.367275 4_3:+13491569 Msa0630990:CDS
CCCGTCCGCCCAACCGCACA+TGG 0.369710 4_3:-13491453 None:intergenic
CCACCATTAGTATGTTGTTT+CGG 0.372180 4_3:+13491283 Msa0630990:CDS
AGTAACAGTTTCATCTCAAA+TGG 0.372771 4_3:+13494292 Msa0630990:three_prime_UTR
CCAGTTCTATCGCAAGTATA+AGG 0.379857 4_3:-13493959 None:intergenic
AGAGGGGTGAAGTTTGATTC+GGG 0.383749 4_3:+13491556 Msa0630990:CDS
CATAATGTTCTTCGTCTAGA+AGG 0.384689 4_3:-13493721 None:intergenic
ATTATATCGCAATGGACTAT+TGG 0.392117 4_3:+13494094 Msa0630990:CDS
CCGAGGAAATCTCGCCTTTG+TGG 0.396249 4_3:+13493828 Msa0630990:CDS
CCGGAGTTCGCGCGAGCACC+TGG 0.399876 4_3:+13491403 Msa0630990:CDS
CCCATGTGCGGTTGGGCGGA+CGG 0.403556 4_3:+13491452 Msa0630990:CDS
CCATGTGCGGTTGGGCGGAC+GGG 0.406444 4_3:+13491453 Msa0630990:CDS
ACAAATGCTATGGAGTTGTT+GGG 0.407713 4_3:-13490932 None:intergenic
CAGATTCTGAGTAGCACTTT+CGG 0.411608 4_3:-13494137 None:intergenic
GCGGACGGGCGGCTTTGTTG+GGG 0.411905 4_3:+13491467 Msa0630990:CDS
AACAAATGCTATGGAGTTGT+TGG 0.421225 4_3:-13490933 None:intergenic
AGATGAGTTTGGGGAGGAGA+TGG 0.422134 4_3:+13491501 Msa0630990:CDS
AGTCCATTGCGATATAATTC+CGG 0.424032 4_3:-13494089 None:intergenic
TAGAGGGGTGAAGTTTGATT+CGG 0.426457 4_3:+13491555 Msa0630990:CDS
TGGGCCACCGCCACATTTGA+CGG 0.429844 4_3:-13491433 None:intergenic
GATGGGGATGGAGATTGTTA+AGG 0.430969 4_3:+13491630 Msa0630990:CDS
GGCTTTGTTGGGGAAAGTTG+GGG 0.436289 4_3:+13491477 Msa0630990:CDS
TCTCCCTACGGTGCGTGTGC+AGG 0.439194 4_3:+13491324 Msa0630990:CDS
ATAAAGTGGTCGAAGAAGTT+TGG 0.442327 4_3:+13493569 Msa0630990:CDS
GGCGGTGGCCCATGTGCGGT+TGG 0.443155 4_3:+13491444 Msa0630990:CDS
GAAGGAGAAGATTATGGTGA+TGG 0.451108 4_3:-13491012 None:intergenic
TTGTTGTGTTTAATTTAGAA+AGG 0.451290 4_3:-13491087 None:intergenic
TCCAAACCAGGTAATAAAAT+GGG 0.457837 4_3:-13490890 None:intergenic
CGTGATCTCCACAGAGGTAA+TGG 0.461462 4_3:-13493620 None:intergenic
ACTAATGGTGGGTCATCGTA+TGG 0.461800 4_3:-13491271 None:intergenic
TGTGTATATATCTGGGTCCA+TGG 0.465474 4_3:-13491353 None:intergenic
GCTCCGAAACAACATACTAA+TGG 0.466171 4_3:-13491286 None:intergenic
TCCATTCTGTGTATATATCT+GGG 0.467221 4_3:-13491360 None:intergenic
ACATTTGACGGTGGCCCACC+AGG 0.475102 4_3:-13491421 None:intergenic
CCTTATACTTGCGATAGAAC+TGG 0.478733 4_3:+13493959 Msa0630990:CDS
CCAGGTGCTCGCGCGAACTC+CGG 0.479427 4_3:-13491403 None:intergenic
GCGGTGGCCCATGTGCGGTT+GGG 0.482275 4_3:+13491445 Msa0630990:CDS
TGGCTCTGGTGATGCTATTG+TGG 0.484324 4_3:+13493979 Msa0630990:CDS
ACCACAACCCCGTCAAAAGA+AGG 0.492807 4_3:-13493911 None:intergenic
TTTGATGATGATGGGAAGAT+GGG 0.499638 4_3:+13491613 Msa0630990:CDS
ATCTCGCCTTTGTGGCATGA+TGG 0.501857 4_3:+13493836 Msa0630990:CDS
GAGAGTGAAAGAGAGGAAGA+AGG 0.503303 4_3:-13491030 None:intergenic
GTTTGATGATGATGGGAAGA+TGG 0.503712 4_3:+13491612 Msa0630990:CDS
CTACGTTTCGCTATTGCAGC+CGG 0.509386 4_3:+13494070 Msa0630990:CDS
TATGGGTTTGGATTAATGGA+AGG 0.510517 4_3:-13490969 None:intergenic
TTGGGATTGTGTTTCTGTTG+TGG 0.512671 4_3:-13491143 None:intergenic
TGTTGTGTTTAATTTAGAAA+GGG 0.513543 4_3:-13491086 None:intergenic
ATCATAAGAAACAAATGCTA+TGG 0.514653 4_3:-13490942 None:intergenic
AGGAGAAGGTGCAGACTAGA+GGG 0.514816 4_3:+13491539 Msa0630990:CDS
AGATTTCCTCGGCAGTGTAA+TGG 0.518791 4_3:-13493817 None:intergenic
ATGGGTTTGGATTAATGGAA+GGG 0.522357 4_3:-13490968 None:intergenic
AATGTGCTGAGGATTCTCTT+AGG 0.525056 4_3:+13491653 Msa0630990:CDS
TGAAGTTTCAAGAACCGAGC+TGG 0.526021 4_3:+13493694 Msa0630990:CDS
CTACTTTCAAGTTTGAAGGA+TGG 0.527893 4_3:-13490830 None:intergenic
TGAAACTGTTACTCCTAGAA+AGG 0.528325 4_3:-13494282 None:intergenic
CTCTGTTCAAAGCAATAAAG+TGG 0.530790 4_3:+13493555 Msa0630990:CDS
GTGGCCCATGTGCGGTTGGG+CGG 0.533577 4_3:+13491448 Msa0630990:CDS
GTGAATTCTAATTGTTCCAT+CGG 0.536542 4_3:-13493879 None:intergenic
GCCACCGTCAAATGTGGCGG+TGG 0.536888 4_3:+13491429 Msa0630990:CDS
GCTGTCTCTCCAAAACATCT+TGG 0.538601 4_3:-13494048 None:intergenic
TTCAAACATTTCTGGACAAG+TGG 0.540890 4_3:-13494023 None:intergenic
TAATCTTCAGCGTAGTATTG+TGG 0.543815 4_3:-13493764 None:intergenic
CCGAAACAACATACTAATGG+TGG 0.545986 4_3:-13491283 None:intergenic
TGTGCGGTTGGGCGGACGGG+CGG 0.550810 4_3:+13491456 Msa0630990:CDS
AATTTAGAAAGGGTTGTTTG+AGG 0.551532 4_3:-13491076 None:intergenic
CCACAACCCCGTCAAAAGAA+GGG 0.552175 4_3:-13493910 None:intergenic
ACCCAGATATATACACAGAA+TGG 0.556834 4_3:+13491359 Msa0630990:CDS
AAGGTGAAGTTTGATGATGA+TGG 0.557714 4_3:+13491604 Msa0630990:CDS
TGGTGGGCCACCGTCAAATG+TGG 0.558669 4_3:+13491423 Msa0630990:CDS
ACAGAGTTGATTCCATAGAA+GGG 0.559311 4_3:-13493538 None:intergenic
GACTGGGTGTAGTTATATGA+AGG 0.559654 4_3:+13491585 Msa0630990:CDS
ATATCGCAATGGACTATTGG+TGG 0.560224 4_3:+13494097 Msa0630990:CDS
GCGTGTGCAGGAGTTTCCCA+TGG 0.560604 4_3:+13491336 Msa0630990:CDS
CAAATGCTATGGAGTTGTTG+GGG 0.561015 4_3:-13490931 None:intergenic
TTGTTTCGGAGCAGCACAGA+GGG 0.563579 4_3:+13491297 Msa0630990:CDS
GTCTAGAAGGAATTCCAGCT+CGG 0.563796 4_3:-13493708 None:intergenic
GAGTTCGCGCGAGCACCTGG+TGG 0.570647 4_3:+13491406 Msa0630990:CDS
GTAACAGTTTCATCTCAAAT+GGG 0.571566 4_3:+13494293 Msa0630990:three_prime_UTR
GTGTATATATCTGGGTCCAT+GGG 0.573279 4_3:-13491352 None:intergenic
AACTCCTGCACACGCACCGT+AGG 0.573419 4_3:-13491328 None:intergenic
TGATGATGGGAAGATGGGGA+TGG 0.574654 4_3:+13491618 Msa0630990:CDS
AGGTGAAGTTTGATGATGAT+GGG 0.578660 4_3:+13491605 Msa0630990:CDS
ACTTGCGATAGAACTGGCTC+TGG 0.580431 4_3:+13493965 Msa0630990:CDS
TGGGGAAGATGAGTTTGGGG+AGG 0.581376 4_3:+13491495 Msa0630990:CDS
AAGGAGAAGGTGCAGACTAG+AGG 0.583488 4_3:+13491538 Msa0630990:CDS
CCACAAAGGCGAGATTTCCT+CGG 0.586298 4_3:-13493828 None:intergenic
AATTGTATGTTATCCAAACC+AGG 0.586578 4_3:-13490902 None:intergenic
CTAATGGTGGGTCATCGTAT+GGG 0.590918 4_3:-13491270 None:intergenic
TTTGGGGATGAATAAGGAGA+AGG 0.593535 4_3:+13491525 Msa0630990:CDS
AAGTGGTCGAAGAAGTTTGG+TGG 0.596281 4_3:+13493572 Msa0630990:CDS
ATGGTGATGGAGAATTGAGG+AGG 0.599588 4_3:-13490999 None:intergenic
GAGGGGTGAAGTTTGATTCG+GGG 0.600416 4_3:+13491557 Msa0630990:CDS
ACTCCTGCACACGCACCGTA+GGG 0.604979 4_3:-13491327 None:intergenic
ATTATGGTGATGGAGAATTG+AGG 0.608638 4_3:-13491002 None:intergenic
CCGTCCGCCCAACCGCACAT+GGG 0.610608 4_3:-13491452 None:intergenic
GGTGCTCGCGCGAACTCCGG+CGG 0.611761 4_3:-13491400 None:intergenic
CAGAGTTGATTCCATAGAAG+GGG 0.614146 4_3:-13493537 None:intergenic
AGTTCGCGCGAGCACCTGGT+GGG 0.614497 4_3:+13491407 Msa0630990:CDS
GATGTTACAATGGAAGCCGC+CGG 0.615125 4_3:+13491384 Msa0630990:CDS
CACAACCCCGTCAAAAGAAG+GGG 0.616084 4_3:-13493909 None:intergenic
ACAGAGGGAGTTTCTCCCTA+CGG 0.617069 4_3:+13491312 Msa0630990:CDS
CAGCCGGAATTATATCGCAA+TGG 0.626399 4_3:+13494086 Msa0630990:CDS
TAAACTTGCCATTACCTCTG+TGG 0.629177 4_3:+13493612 Msa0630990:CDS
ATGTGGCGGTGGCCCATGTG+CGG 0.629189 4_3:+13491440 Msa0630990:CDS
TGGGCCACCGTCAAATGTGG+CGG 0.639663 4_3:+13491426 Msa0630990:CDS
CGAAACAACATACTAATGGT+GGG 0.640061 4_3:-13491282 None:intergenic
CAGAATGGAAGATGTTACAA+TGG 0.641345 4_3:+13491374 Msa0630990:CDS
TTCTGAGTAGCACTTTCGGT+AGG 0.642730 4_3:-13494133 None:intergenic
GAATTTGAAGATTACGACGA+CGG 0.646322 4_3:+13491238 Msa0630990:CDS
GTATTACCATTACACTGCCG+AGG 0.655331 4_3:+13493811 Msa0630990:CDS
AGTTGGGGAAGATGAGTTTG+GGG 0.660506 4_3:+13491492 Msa0630990:CDS
TAGACGAAGAACATTATGAG+AGG 0.664380 4_3:+13493726 Msa0630990:CDS
GCCACCGCCACATTTGACGG+TGG 0.667423 4_3:-13491430 None:intergenic
TTGATGATGATGGGAAGATG+GGG 0.672300 4_3:+13491614 Msa0630990:CDS
GGAGAAGGTGCAGACTAGAG+GGG 0.677795 4_3:+13491540 Msa0630990:CDS
TTAAGTCCATCATGCCACAA+AGG 0.677817 4_3:-13493842 None:intergenic
GATTGTTAAGGAATGTGCTG+AGG 0.682184 4_3:+13491642 Msa0630990:CDS
AAGTTTATGTACCTTCAATG+TGG 0.696809 4_3:+13494167 Msa0630990:CDS
GTTGTTTCGGAGCAGCACAG+AGG 0.736871 4_3:+13491296 Msa0630990:CDS
TCATCGCGTGATCTCCACAG+AGG 0.761083 4_3:-13493626 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAATAAAATAGAAG+TGG - chr4_3:13491762-13491781 None:intergenic 10.0%
!! ATAAAATGTATTTATATAAG+TGG + chr4_3:13491974-13491993 Msa0630990:intron 10.0%
!! TAAAATGTATTTATATAAGT+GGG + chr4_3:13491975-13491994 Msa0630990:intron 10.0%
!!! GATTTTTTTTAATATTGATT+CGG + chr4_3:13492963-13492982 Msa0630990:intron 10.0%
!! ATAAGCTTATATATCATATA+AGG - chr4_3:13492307-13492326 None:intergenic 15.0%
!!! AAGTCAATAAAATCAATTTT+GGG - chr4_3:13493420-13493439 None:intergenic 15.0%
!!! AAAGTCAATAAAATCAATTT+TGG - chr4_3:13493421-13493440 None:intergenic 15.0%
!!! TATACAAAACTTGTTTAATT+TGG + chr4_3:13494342-13494361 Msa0630990:three_prime_UTR 15.0%
!! TTCCCTTCAAAAAAAAAAAT+GGG - chr4_3:13490865-13490884 None:intergenic 20.0%
!! TTTCCCTTCAAAAAAAAAAA+TGG - chr4_3:13490866-13490885 None:intergenic 20.0%
!!! TGTTGTGTTTAATTTAGAAA+GGG - chr4_3:13491089-13491108 None:intergenic 20.0%
!!! TTGTTGTGTTTAATTTAGAA+AGG - chr4_3:13491090-13491109 None:intergenic 20.0%
!!! ATATTTTATTTTACAGTACG+CGG + chr4_3:13492056-13492075 Msa0630990:intron 20.0%
!!! TGTCATCTGATTTATTTTTT+AGG + chr4_3:13492280-13492299 Msa0630990:intron 20.0%
!! TTACTATTCATAATGAGATT+CGG + chr4_3:13492389-13492408 Msa0630990:intron 20.0%
!! ATATTAATAACATGTAGCAA+TGG + chr4_3:13492547-13492566 Msa0630990:intron 20.0%
!!! ATGTTTCAATTTTACTTTGA+AGG + chr4_3:13492702-13492721 Msa0630990:intron 20.0%
!!! AGATATTTTTTCCTTTGTTA+AGG + chr4_3:13492906-13492925 Msa0630990:intron 20.0%
!!! TTTCAATGTTTTTACTTTGA+AGG + chr4_3:13493018-13493037 Msa0630990:intron 20.0%
!!! AATAAAATCAATTTTGGGAT+GGG - chr4_3:13493415-13493434 None:intergenic 20.0%
!! GAGAAATAATAAAAAAAGCA+TGG + chr4_3:13493654-13493673 Msa0630990:CDS 20.0%
!!! ACACCCATTTTTTTTTTTGA+AGG + chr4_3:13490859-13490878 Msa0630990:five_prime_UTR 25.0%
!!! CACCCATTTTTTTTTTTGAA+GGG + chr4_3:13490860-13490879 Msa0630990:five_prime_UTR 25.0%
! ATCATAAGAAACAAATGCTA+TGG - chr4_3:13490945-13490964 None:intergenic 25.0%
!! TTTTTATGGGTTTGGATTAA+TGG - chr4_3:13490976-13490995 None:intergenic 25.0%
!!! AGTTTTTATATGTCGTTTTG+AGG - chr4_3:13491113-13491132 None:intergenic 25.0%
!!! TGTAAAAGTTGGTTTTTGTA+GGG + chr4_3:13491851-13491870 Msa0630990:intron 25.0%
! TACCATCTTAAAATTTGTGT+TGG - chr4_3:13491888-13491907 None:intergenic 25.0%
!!! CACAAATTTTAAGATGGTAT+CGG + chr4_3:13491889-13491908 Msa0630990:intron 25.0%
!! TTTTATGATCATATCTCATC+TGG - chr4_3:13491960-13491979 None:intergenic 25.0%
!!! TATTTTATTTTACAGTACGC+GGG + chr4_3:13492057-13492076 Msa0630990:intron 25.0%
! GTGAATTATTAGAATGAAAC+GGG - chr4_3:13492209-13492228 None:intergenic 25.0%
! GGTGAATTATTAGAATGAAA+CGG - chr4_3:13492210-13492229 None:intergenic 25.0%
!! TTGCTAAAGAAGTATAATCA+TGG + chr4_3:13492469-13492488 Msa0630990:intron 25.0%
!!! CTATTTTTCAACACTTATTG+AGG + chr4_3:13492774-13492793 Msa0630990:intron 25.0%
!!! TAACCAAAACTTTTTCTGTT+AGG + chr4_3:13492831-13492850 Msa0630990:intron 25.0%
!! TAACCTAACAGAAAAAGTTT+TGG - chr4_3:13492837-13492856 None:intergenic 25.0%
!!! AAAATAGCTCTAACATTAGA+TGG - chr4_3:13493076-13493095 None:intergenic 25.0%
!! TGATATTTTATGACGTCAAA+TGG + chr4_3:13493250-13493269 Msa0630990:intron 25.0%
!!! CAATAAAATCAATTTTGGGA+TGG - chr4_3:13493416-13493435 None:intergenic 25.0%
! TTAGAACTTCTGAATTGAAA+TGG - chr4_3:13493514-13493533 None:intergenic 25.0%
! AGTTTAAATCGAAAAACACA+AGG - chr4_3:13493598-13493617 None:intergenic 25.0%
!! AATAATAAAAAAAGCATGGC+AGG + chr4_3:13493658-13493677 Msa0630990:CDS 25.0%
!! AATTTTTATCACCACATTGA+AGG - chr4_3:13494181-13494200 None:intergenic 25.0%
! GTTTATTATGTATCCTTTCT+AGG + chr4_3:13494269-13494288 Msa0630990:three_prime_UTR 25.0%
!! TTTGCTACTTTCAAGTTTGA+AGG - chr4_3:13490837-13490856 None:intergenic 30.0%
TCCAAACCAGGTAATAAAAT+GGG - chr4_3:13490893-13490912 None:intergenic 30.0%
ATCCAAACCAGGTAATAAAA+TGG - chr4_3:13490894-13490913 None:intergenic 30.0%
AATTGTATGTTATCCAAACC+AGG - chr4_3:13490905-13490924 None:intergenic 30.0%
! ATTGAGGAGGACATTTTTAT+GGG - chr4_3:13490989-13491008 None:intergenic 30.0%
! AATTGAGGAGGACATTTTTA+TGG - chr4_3:13490990-13491009 None:intergenic 30.0%
!!! TTTTGAAGTGAGGTTGTTTT+TGG - chr4_3:13491055-13491074 None:intergenic 30.0%
AATTTAGAAAGGGTTGTTTG+AGG - chr4_3:13491079-13491098 None:intergenic 30.0%
!!! TTTTTTGTTGCGTCGTTTTA+AGG - chr4_3:13491170-13491189 None:intergenic 30.0%
TCCATTCTGTGTATATATCT+GGG - chr4_3:13491363-13491382 None:intergenic 30.0%
TTCCATTCTGTGTATATATC+TGG - chr4_3:13491364-13491383 None:intergenic 30.0%
!!! CTGTAAAAGTTGGTTTTTGT+AGG + chr4_3:13491850-13491869 Msa0630990:intron 30.0%
!! GTCCAACACAAATTTTAAGA+TGG + chr4_3:13491883-13491902 Msa0630990:intron 30.0%
TTCAATATCAGTTGAGCTAT+CGG + chr4_3:13491918-13491937 Msa0630990:intron 30.0%
TGTATTTATATAAGTGGGAC+TGG + chr4_3:13491980-13491999 Msa0630990:intron 30.0%
GTATTTATATAAGTGGGACT+GGG + chr4_3:13491981-13492000 Msa0630990:intron 30.0%
TTCACCACTAAAACTTAATG+TGG + chr4_3:13492224-13492243 Msa0630990:intron 30.0%
!! CTTACCACATTAAGTTTTAG+TGG - chr4_3:13492231-13492250 None:intergenic 30.0%
ATCAGATGACAAAAGAAAAG+TGG - chr4_3:13492271-13492290 None:intergenic 30.0%
! ATGAGATTCGGTTAATGAAT+TGG + chr4_3:13492401-13492420 Msa0630990:intron 30.0%
CGGTTAATGAATTGGAAAAT+TGG + chr4_3:13492409-13492428 Msa0630990:intron 30.0%
!! TGGTTTGTTTACACGTTATT+TGG + chr4_3:13492489-13492508 Msa0630990:intron 30.0%
! GGTTTGTTTACACGTTATTT+GGG + chr4_3:13492490-13492509 Msa0630990:intron 30.0%
GTTTGTTTACACGTTATTTG+GGG + chr4_3:13492491-13492510 Msa0630990:intron 30.0%
! GAAGCTTTTTATGTTAGGTT+AGG + chr4_3:13492517-13492536 Msa0630990:intron 30.0%
!! TGAAAGTTTGTTAATGCATG+AGG + chr4_3:13492570-13492589 Msa0630990:intron 30.0%
TAAACTGACATTGGTAGAAA+TGG + chr4_3:13492861-13492880 Msa0630990:intron 30.0%
TCAAACATTCTCCTTAACAA+AGG - chr4_3:13492920-13492939 None:intergenic 30.0%
CTTTGCAGAATACTAATGTT+TGG - chr4_3:13493153-13493172 None:intergenic 30.0%
AAAGATCATGTATTCACTTG+AGG + chr4_3:13493169-13493188 Msa0630990:intron 30.0%
GATTCTGATACATTACATTG+TGG + chr4_3:13493199-13493218 Msa0630990:intron 30.0%
GTGAATTCTAATTGTTCCAT+CGG - chr4_3:13493882-13493901 None:intergenic 30.0%
! TATTATACCCCTTCTTTTGA+CGG + chr4_3:13493902-13493921 Msa0630990:CDS 30.0%
!! ATTATATCGCAATGGACTAT+TGG + chr4_3:13494094-13494113 Msa0630990:CDS 30.0%
AAGTTTATGTACCTTCAATG+TGG + chr4_3:13494167-13494186 Msa0630990:CDS 30.0%
AGTAACAGTTTCATCTCAAA+TGG + chr4_3:13494292-13494311 Msa0630990:three_prime_UTR 30.0%
GTAACAGTTTCATCTCAAAT+GGG + chr4_3:13494293-13494312 Msa0630990:three_prime_UTR 30.0%
!!! AACAACTTTTGAAGCGTAAA+TGG + chr4_3:13494385-13494404 Msa0630990:three_prime_UTR 30.0%
!! CTACTTTCAAGTTTGAAGGA+TGG - chr4_3:13490833-13490852 None:intergenic 35.0%
!! AAAGCACCCATTTTATTACC+TGG + chr4_3:13490884-13490903 Msa0630990:five_prime_UTR 35.0%
! ACCCATTTTATTACCTGGTT+TGG + chr4_3:13490889-13490908 Msa0630990:five_prime_UTR 35.0%
ACAAATGCTATGGAGTTGTT+GGG - chr4_3:13490935-13490954 None:intergenic 35.0%
AACAAATGCTATGGAGTTGT+TGG - chr4_3:13490936-13490955 None:intergenic 35.0%
ATGGGTTTGGATTAATGGAA+GGG - chr4_3:13490971-13490990 None:intergenic 35.0%
TATGGGTTTGGATTAATGGA+AGG - chr4_3:13490972-13490991 None:intergenic 35.0%
!! ATTATGGTGATGGAGAATTG+AGG - chr4_3:13491005-13491024 None:intergenic 35.0%
!!! TGTTTGAGGTTTTTGAAGTG+AGG - chr4_3:13491065-13491084 None:intergenic 35.0%
!!! TCTTTTGTTGTGTCGTTTTG+AGG - chr4_3:13491202-13491221 None:intergenic 35.0%
GAATTTGAAGATTACGACGA+CGG + chr4_3:13491238-13491257 Msa0630990:CDS 35.0%
CGAAACAACATACTAATGGT+GGG - chr4_3:13491285-13491304 None:intergenic 35.0%
! CCACCATTAGTATGTTGTTT+CGG + chr4_3:13491283-13491302 Msa0630990:CDS 35.0%
ACCCAGATATATACACAGAA+TGG + chr4_3:13491359-13491378 Msa0630990:CDS 35.0%
CAGAATGGAAGATGTTACAA+TGG + chr4_3:13491374-13491393 Msa0630990:CDS 35.0%
!! AAGGTGAAGTTTGATGATGA+TGG + chr4_3:13491604-13491623 Msa0630990:CDS 35.0%
!! AGGTGAAGTTTGATGATGAT+GGG + chr4_3:13491605-13491624 Msa0630990:CDS 35.0%
!! TTTGATGATGATGGGAAGAT+GGG + chr4_3:13491613-13491632 Msa0630990:CDS 35.0%
!!! GAATCTTGCTGTTTTGAAAG+AGG + chr4_3:13491687-13491706 Msa0630990:CDS 35.0%
! GGTTTTTGTAGGGTTAAGTT+AGG + chr4_3:13491861-13491880 Msa0630990:intron 35.0%
CTACCATATCTGCTTGTAAA+GGG - chr4_3:13492017-13492036 None:intergenic 35.0%
CTTTACAAGCAGATATGGTA+GGG + chr4_3:13492016-13492035 Msa0630990:intron 35.0%
ATGAAACGGGATTCATCATA+AGG - chr4_3:13492196-13492215 None:intergenic 35.0%
TGTGATTCACAATTCGTATC+TGG + chr4_3:13492435-13492454 Msa0630990:intron 35.0%
! GCTTTTTATGTTAGGTTAGG+TGG + chr4_3:13492520-13492539 Msa0630990:intron 35.0%
TTGTTAATGCATGAGGAAGA+TGG + chr4_3:13492577-13492596 Msa0630990:intron 35.0%
AAGATGGTTGTACCTTTGTT+AGG + chr4_3:13492593-13492612 Msa0630990:intron 35.0%
AGATGGTTGTACCTTTGTTA+GGG + chr4_3:13492594-13492613 Msa0630990:intron 35.0%
CATCAAACATTCCCTAACAA+AGG - chr4_3:13492608-13492627 None:intergenic 35.0%
TCAGTGAAAATCGAGTTTGA+AGG + chr4_3:13492669-13492688 Msa0630990:intron 35.0%
CAGTGAAAATCGAGTTTGAA+GGG + chr4_3:13492670-13492689 Msa0630990:intron 35.0%
AAATCGAGTTTGAAGGGAAA+TGG + chr4_3:13492676-13492695 Msa0630990:intron 35.0%
!! GGTTAGTTCTAAACTGACAT+TGG + chr4_3:13492852-13492871 Msa0630990:intron 35.0%
CATCACTTCAAGTCAAATTG+AGG + chr4_3:13493097-13493116 Msa0630990:intron 35.0%
! GAGGAAATTTTCTGTGTGAA+AGG + chr4_3:13493124-13493143 Msa0630990:intron 35.0%
! GACGTCAAATGGTTTTTGTA+TGG + chr4_3:13493261-13493280 Msa0630990:intron 35.0%
! TGTATGGATTGTGACTGATA+TGG + chr4_3:13493277-13493296 Msa0630990:intron 35.0%
! ACTGATATGGTTTGCAAGAT+AGG + chr4_3:13493290-13493309 Msa0630990:intron 35.0%
! ATATGGTTTGCAAGATAGGT+TGG + chr4_3:13493294-13493313 Msa0630990:intron 35.0%
TAAGTCACACATGTAGAGTT+AGG + chr4_3:13493351-13493370 Msa0630990:intron 35.0%
AAGTCACACATGTAGAGTTA+GGG + chr4_3:13493352-13493371 Msa0630990:intron 35.0%
!!! AATTTTGGGATGGGTAGAAT+TGG - chr4_3:13493406-13493425 None:intergenic 35.0%
! ACAGAGTTGATTCCATAGAA+GGG - chr4_3:13493541-13493560 None:intergenic 35.0%
! AACAGAGTTGATTCCATAGA+AGG - chr4_3:13493542-13493561 None:intergenic 35.0%
CTCTGTTCAAAGCAATAAAG+TGG + chr4_3:13493555-13493574 Msa0630990:CDS 35.0%
ATAAAGTGGTCGAAGAAGTT+TGG + chr4_3:13493569-13493588 Msa0630990:CDS 35.0%
CATAATGTTCTTCGTCTAGA+AGG - chr4_3:13493724-13493743 None:intergenic 35.0%
TAGACGAAGAACATTATGAG+AGG + chr4_3:13493726-13493745 Msa0630990:CDS 35.0%
TAATCTTCAGCGTAGTATTG+TGG - chr4_3:13493767-13493786 None:intergenic 35.0%
GTAATACTCTTGACGATTCT+TGG - chr4_3:13493798-13493817 None:intergenic 35.0%
! ATTATACCCCTTCTTTTGAC+GGG + chr4_3:13493903-13493922 Msa0630990:CDS 35.0%
! TTCAAACATTTCTGGACAAG+TGG - chr4_3:13494026-13494045 None:intergenic 35.0%
! TCTTGGTCTTCAAACATTTC+TGG - chr4_3:13494034-13494053 None:intergenic 35.0%
! GTTTGAAGACCAAGATGTTT+TGG + chr4_3:13494039-13494058 Msa0630990:CDS 35.0%
AGTCCATTGCGATATAATTC+CGG - chr4_3:13494092-13494111 None:intergenic 35.0%
TGAAACTGTTACTCCTAGAA+AGG - chr4_3:13494285-13494304 None:intergenic 35.0%
!!! AACTTTTGAAGCGTAAATGG+AGG + chr4_3:13494388-13494407 Msa0630990:three_prime_UTR 35.0%
!!! ACTTTTGAAGCGTAAATGGA+GGG + chr4_3:13494389-13494408 Msa0630990:three_prime_UTR 35.0%
CAAATGCTATGGAGTTGTTG+GGG - chr4_3:13490934-13490953 None:intergenic 40.0%
! GGAGGACATTTTTATGGGTT+TGG - chr4_3:13490984-13491003 None:intergenic 40.0%
GAAGGAGAAGATTATGGTGA+TGG - chr4_3:13491015-13491034 None:intergenic 40.0%
GAGGAAGAAGGAGAAGATTA+TGG - chr4_3:13491021-13491040 None:intergenic 40.0%
!! GTTTTTGGAGAGTGAAAGAG+AGG - chr4_3:13491040-13491059 None:intergenic 40.0%
GTTTCTGTTGTGGAAGCTTT+AGG - chr4_3:13491136-13491155 None:intergenic 40.0%
! TTGGGATTGTGTTTCTGTTG+TGG - chr4_3:13491146-13491165 None:intergenic 40.0%
!!! GTTGCGTCGTTTTAAGGTTT+GGG - chr4_3:13491164-13491183 None:intergenic 40.0%
!!! TGTTGCGTCGTTTTAAGGTT+TGG - chr4_3:13491165-13491184 None:intergenic 40.0%
CCGAAACAACATACTAATGG+TGG - chr4_3:13491286-13491305 None:intergenic 40.0%
GCTCCGAAACAACATACTAA+TGG - chr4_3:13491289-13491308 None:intergenic 40.0%
GTGTATATATCTGGGTCCAT+GGG - chr4_3:13491355-13491374 None:intergenic 40.0%
TGTGTATATATCTGGGTCCA+TGG - chr4_3:13491356-13491375 None:intergenic 40.0%
AAAGTTGGGGAAGATGAGTT+TGG + chr4_3:13491490-13491509 Msa0630990:CDS 40.0%
AAGTTGGGGAAGATGAGTTT+GGG + chr4_3:13491491-13491510 Msa0630990:CDS 40.0%
!!! GATGGTTTTGGGGATGAATA+AGG + chr4_3:13491519-13491538 Msa0630990:CDS 40.0%
TTTGGGGATGAATAAGGAGA+AGG + chr4_3:13491525-13491544 Msa0630990:CDS 40.0%
TAGAGGGGTGAAGTTTGATT+CGG + chr4_3:13491555-13491574 Msa0630990:CDS 40.0%
!! TGAAGTTTGATTCGGGGTTT+CGG + chr4_3:13491563-13491582 Msa0630990:CDS 40.0%
GACTGGGTGTAGTTATATGA+AGG + chr4_3:13491585-13491604 Msa0630990:CDS 40.0%
!! GTTTGATGATGATGGGAAGA+TGG + chr4_3:13491612-13491631 Msa0630990:CDS 40.0%
!! TTGATGATGATGGGAAGATG+GGG + chr4_3:13491614-13491633 Msa0630990:CDS 40.0%
GATTGTTAAGGAATGTGCTG+AGG + chr4_3:13491642-13491661 Msa0630990:CDS 40.0%
AATGTGCTGAGGATTCTCTT+AGG + chr4_3:13491653-13491672 Msa0630990:CDS 40.0%
CGAGACATCACTGTAAAAGT+TGG + chr4_3:13491840-13491859 Msa0630990:intron 40.0%
CATATCTGCTTGTAAAGGGA+GGG - chr4_3:13492013-13492032 None:intergenic 40.0%
CCTACCATATCTGCTTGTAA+AGG - chr4_3:13492018-13492037 None:intergenic 40.0%
CCTTTACAAGCAGATATGGT+AGG + chr4_3:13492015-13492034 Msa0630990:intron 40.0%
TGTTTACACGTTATTTGGGG+AGG + chr4_3:13492494-13492513 Msa0630990:intron 40.0%
GTTTACACGTTATTTGGGGA+GGG + chr4_3:13492495-13492514 Msa0630990:intron 40.0%
! GGAGGGAAGCTTTTTATGTT+AGG + chr4_3:13492512-13492531 Msa0630990:intron 40.0%
TCGGTTAAAGTTGCGTTTGA+AGG + chr4_3:13492982-13493001 Msa0630990:intron 40.0%
CGGTTAAAGTTGCGTTTGAA+GGG + chr4_3:13492983-13493002 Msa0630990:intron 40.0%
TTAAAGTTGCGTTTGAAGGG+AGG + chr4_3:13492986-13493005 Msa0630990:intron 40.0%
CAAGTCAAATTGAGGTTCAG+AGG + chr4_3:13493105-13493124 Msa0630990:intron 40.0%
!! GTTTACTTTTGTACCACTGC+AGG + chr4_3:13493478-13493497 Msa0630990:intron 40.0%
! AGTTCTAACATCCCCTTCTA+TGG + chr4_3:13493526-13493545 Msa0630990:CDS 40.0%
! CAGAGTTGATTCCATAGAAG+GGG - chr4_3:13493540-13493559 None:intergenic 40.0%
TAAACTTGCCATTACCTCTG+TGG + chr4_3:13493612-13493631 Msa0630990:CDS 40.0%
TTAAGTCCATCATGCCACAA+AGG - chr4_3:13493845-13493864 None:intergenic 40.0%
! AAGTTCCTTTTTGTGACCGA+TGG + chr4_3:13493863-13493882 Msa0630990:CDS 40.0%
TTGTTCCATCGGTCACAAAA+AGG - chr4_3:13493871-13493890 None:intergenic 40.0%
! TTATACCCCTTCTTTTGACG+GGG + chr4_3:13493904-13493923 Msa0630990:CDS 40.0%
CCAGTTCTATCGCAAGTATA+AGG - chr4_3:13493962-13493981 None:intergenic 40.0%
CCTTATACTTGCGATAGAAC+TGG + chr4_3:13493959-13493978 Msa0630990:CDS 40.0%
!! ATATCGCAATGGACTATTGG+TGG + chr4_3:13494097-13494116 Msa0630990:CDS 40.0%
CAGATTCTGAGTAGCACTTT+CGG - chr4_3:13494140-13494159 None:intergenic 40.0%
!! ATGGTGATGGAGAATTGAGG+AGG - chr4_3:13491002-13491021 None:intergenic 45.0%
GAGAGTGAAAGAGAGGAAGA+AGG - chr4_3:13491033-13491052 None:intergenic 45.0%
!! CTAATGGTGGGTCATCGTAT+GGG - chr4_3:13491273-13491292 None:intergenic 45.0%
!! ACTAATGGTGGGTCATCGTA+TGG - chr4_3:13491274-13491293 None:intergenic 45.0%
AGTTGGGGAAGATGAGTTTG+GGG + chr4_3:13491492-13491511 Msa0630990:CDS 45.0%
! TTTGGGGAGGAGATGGTTTT+GGG + chr4_3:13491508-13491527 Msa0630990:CDS 45.0%
AGAGGGGTGAAGTTTGATTC+GGG + chr4_3:13491556-13491575 Msa0630990:CDS 45.0%
GATGGGGATGGAGATTGTTA+AGG + chr4_3:13491630-13491649 Msa0630990:CDS 45.0%
CCATATCTGCTTGTAAAGGG+AGG - chr4_3:13492014-13492033 None:intergenic 45.0%
CCTCCCTTTACAAGCAGATA+TGG + chr4_3:13492011-13492030 Msa0630990:intron 45.0%
CAGATATGGTAGGGTGAGTT+AGG + chr4_3:13492025-13492044 Msa0630990:intron 45.0%
AAGTGGTCGAAGAAGTTTGG+TGG + chr4_3:13493572-13493591 Msa0630990:CDS 45.0%
TGAAGTTTCAAGAACCGAGC+TGG + chr4_3:13493694-13493713 Msa0630990:CDS 45.0%
GTCTAGAAGGAATTCCAGCT+CGG - chr4_3:13493711-13493730 None:intergenic 45.0%
GTATTACCATTACACTGCCG+AGG + chr4_3:13493811-13493830 Msa0630990:CDS 45.0%
AGATTTCCTCGGCAGTGTAA+TGG - chr4_3:13493820-13493839 None:intergenic 45.0%
GCTGTCTCTCCAAAACATCT+TGG - chr4_3:13494051-13494070 None:intergenic 45.0%
CAGCCGGAATTATATCGCAA+TGG + chr4_3:13494086-13494105 Msa0630990:CDS 45.0%
TGGACTATTGGTGGAGTTAG+AGG + chr4_3:13494106-13494125 Msa0630990:CDS 45.0%
TTCTGAGTAGCACTTTCGGT+AGG - chr4_3:13494136-13494155 None:intergenic 45.0%
TTGTTTCGGAGCAGCACAGA+GGG + chr4_3:13491297-13491316 Msa0630990:CDS 50.0%
ACAGAGGGAGTTTCTCCCTA+CGG + chr4_3:13491312-13491331 Msa0630990:CDS 50.0%
GATGTTACAATGGAAGCCGC+CGG + chr4_3:13491384-13491403 Msa0630990:CDS 50.0%
!! CGGCTTTGTTGGGGAAAGTT+GGG + chr4_3:13491476-13491495 Msa0630990:CDS 50.0%
!! GGCTTTGTTGGGGAAAGTTG+GGG + chr4_3:13491477-13491496 Msa0630990:CDS 50.0%
AGATGAGTTTGGGGAGGAGA+TGG + chr4_3:13491501-13491520 Msa0630990:CDS 50.0%
! GTTTGGGGAGGAGATGGTTT+TGG + chr4_3:13491507-13491526 Msa0630990:CDS 50.0%
!! TTGGGGAGGAGATGGTTTTG+GGG + chr4_3:13491509-13491528 Msa0630990:CDS 50.0%
! AAGGAGAAGGTGCAGACTAG+AGG + chr4_3:13491538-13491557 Msa0630990:CDS 50.0%
! AGGAGAAGGTGCAGACTAGA+GGG + chr4_3:13491539-13491558 Msa0630990:CDS 50.0%
! GAGGGGTGAAGTTTGATTCG+GGG + chr4_3:13491557-13491576 Msa0630990:CDS 50.0%
!! TTTGATTCGGGGTTTCGGAC+TGG + chr4_3:13491568-13491587 Msa0630990:CDS 50.0%
!! TTGATTCGGGGTTTCGGACT+GGG + chr4_3:13491569-13491588 Msa0630990:CDS 50.0%
!! TGATGATGGGAAGATGGGGA+TGG + chr4_3:13491618-13491637 Msa0630990:CDS 50.0%
ATCTGCTTGTAAAGGGAGGG+AGG - chr4_3:13492010-13492029 None:intergenic 50.0%
! CTTTTGTACCACTGCAGGCT+AGG + chr4_3:13493483-13493502 Msa0630990:intron 50.0%
TGGAAAATCCTAGCCTGCAG+TGG - chr4_3:13493494-13493513 None:intergenic 50.0%
CGTGATCTCCACAGAGGTAA+TGG - chr4_3:13493623-13493642 None:intergenic 50.0%
CCACAAAGGCGAGATTTCCT+CGG - chr4_3:13493831-13493850 None:intergenic 50.0%
ATCTCGCCTTTGTGGCATGA+TGG + chr4_3:13493836-13493855 Msa0630990:CDS 50.0%
CACAACCCCGTCAAAAGAAG+GGG - chr4_3:13493912-13493931 None:intergenic 50.0%
CCACAACCCCGTCAAAAGAA+GGG - chr4_3:13493913-13493932 None:intergenic 50.0%
ACCACAACCCCGTCAAAAGA+AGG - chr4_3:13493914-13493933 None:intergenic 50.0%
! TCTTTTGACGGGGTTGTGGT+TGG + chr4_3:13493914-13493933 Msa0630990:CDS 50.0%
! ACTTGCGATAGAACTGGCTC+TGG + chr4_3:13493965-13493984 Msa0630990:CDS 50.0%
!! TGGCTCTGGTGATGCTATTG+TGG + chr4_3:13493979-13493998 Msa0630990:CDS 50.0%
CTACGTTTCGCTATTGCAGC+CGG + chr4_3:13494070-13494089 Msa0630990:CDS 50.0%
! GTTGTTTCGGAGCAGCACAG+AGG + chr4_3:13491296-13491315 Msa0630990:CDS 55.0%
!! GCGGCTTTGTTGGGGAAAGT+TGG + chr4_3:13491475-13491494 Msa0630990:CDS 55.0%
TGGGGAAGATGAGTTTGGGG+AGG + chr4_3:13491495-13491514 Msa0630990:CDS 55.0%
! GGAGAAGGTGCAGACTAGAG+GGG + chr4_3:13491540-13491559 Msa0630990:CDS 55.0%
CAGTTGAGCTATCGGCCACT+CGG + chr4_3:13491926-13491945 Msa0630990:intron 55.0%
AGTTGAGCTATCGGCCACTC+GGG + chr4_3:13491927-13491946 Msa0630990:intron 55.0%
TCATCGCGTGATCTCCACAG+AGG - chr4_3:13493629-13493648 None:intergenic 55.0%
CCGAGGAAATCTCGCCTTTG+TGG + chr4_3:13493828-13493847 Msa0630990:CDS 55.0%
! CCCTTCTTTTGACGGGGTTG+TGG + chr4_3:13493910-13493929 Msa0630990:CDS 55.0%
ACTCCTGCACACGCACCGTA+GGG - chr4_3:13491330-13491349 None:intergenic 60.0%
AACTCCTGCACACGCACCGT+AGG - chr4_3:13491331-13491350 None:intergenic 60.0%
GCGTGTGCAGGAGTTTCCCA+TGG + chr4_3:13491336-13491355 Msa0630990:CDS 60.0%
ACATTTGACGGTGGCCCACC+AGG - chr4_3:13491424-13491443 None:intergenic 60.0%
! TGGTGGGCCACCGTCAAATG+TGG + chr4_3:13491423-13491442 Msa0630990:CDS 60.0%
TGGGCCACCGTCAAATGTGG+CGG + chr4_3:13491426-13491445 Msa0630990:CDS 60.0%
TGGGCCACCGCCACATTTGA+CGG - chr4_3:13491436-13491455 None:intergenic 60.0%
! CATCTGGAGCATGACCCGAG+TGG - chr4_3:13491944-13491963 None:intergenic 60.0%
TCTCCCTACGGTGCGTGTGC+AGG + chr4_3:13491324-13491343 Msa0630990:CDS 65.0%
AGTTCGCGCGAGCACCTGGT+GGG + chr4_3:13491407-13491426 Msa0630990:CDS 65.0%
GCCACCGTCAAATGTGGCGG+TGG + chr4_3:13491429-13491448 Msa0630990:CDS 65.0%
GCCACCGCCACATTTGACGG+TGG - chr4_3:13491433-13491452 None:intergenic 65.0%
ATGTGGCGGTGGCCCATGTG+CGG + chr4_3:13491440-13491459 Msa0630990:CDS 65.0%
CCAGGTGCTCGCGCGAACTC+CGG - chr4_3:13491406-13491425 None:intergenic 70.0%
GAGTTCGCGCGAGCACCTGG+TGG + chr4_3:13491406-13491425 Msa0630990:CDS 70.0%
GCGGTGGCCCATGTGCGGTT+GGG + chr4_3:13491445-13491464 Msa0630990:CDS 70.0%
GTGGCCCATGTGCGGTTGGG+CGG + chr4_3:13491448-13491467 Msa0630990:CDS 70.0%
CCGTCCGCCCAACCGCACAT+GGG - chr4_3:13491455-13491474 None:intergenic 70.0%
CCCATGTGCGGTTGGGCGGA+CGG + chr4_3:13491452-13491471 Msa0630990:CDS 70.0%
CCATGTGCGGTTGGGCGGAC+GGG + chr4_3:13491453-13491472 Msa0630990:CDS 70.0%
!! GGCGGACGGGCGGCTTTGTT+GGG + chr4_3:13491466-13491485 Msa0630990:CDS 70.0%
!! GCGGACGGGCGGCTTTGTTG+GGG + chr4_3:13491467-13491486 Msa0630990:CDS 70.0%
GGTGCTCGCGCGAACTCCGG+CGG - chr4_3:13491403-13491422 None:intergenic 75.0%
CCGGAGTTCGCGCGAGCACC+TGG + chr4_3:13491403-13491422 Msa0630990:CDS 75.0%
GGCGGTGGCCCATGTGCGGT+TGG + chr4_3:13491444-13491463 Msa0630990:CDS 75.0%
CCCGTCCGCCCAACCGCACA+TGG - chr4_3:13491456-13491475 None:intergenic 75.0%
TGTGCGGTTGGGCGGACGGG+CGG + chr4_3:13491456-13491475 Msa0630990:CDS 75.0%
! GGGCGGACGGGCGGCTTTGT+TGG + chr4_3:13491465-13491484 Msa0630990:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 13490830 13494460 13490830 ID=Msa0630990;Name=Msa0630990
chr4_3 mRNA 13490830 13494460 13490830 ID=Msa0630990-mRNA-1;Parent=Msa0630990;Name=Msa0630990-mRNA-1;_AED=0.01;_eAED=0.01;_QI=165|1|1|1|1|1|2|268|468
chr4_3 exon 13490830 13491708 13490830 ID=Msa0630990-mRNA-1:exon:3806;Parent=Msa0630990-mRNA-1
chr4_3 exon 13493500 13494460 13493500 ID=Msa0630990-mRNA-1:exon:3807;Parent=Msa0630990-mRNA-1
chr4_3 five_prime_UTR 13490830 13490994 13490830 ID=Msa0630990-mRNA-1:five_prime_utr;Parent=Msa0630990-mRNA-1
chr4_3 CDS 13490995 13491708 13490995 ID=Msa0630990-mRNA-1:cds;Parent=Msa0630990-mRNA-1
chr4_3 CDS 13493500 13494192 13493500 ID=Msa0630990-mRNA-1:cds;Parent=Msa0630990-mRNA-1
chr4_3 three_prime_UTR 13494193 13494460 13494193 ID=Msa0630990-mRNA-1:three_prime_utr;Parent=Msa0630990-mRNA-1
Gene Sequence

>Msa0630990

ATGTCCTCCTCAATTCTCCATCACCATAATCTTCTCCTTCTTCCTCTCTTTCACTCTCCAAAAACAACCTCACTTCAAAAACCTCAAACAACCCTTTCTAAATTAAACACAACAACCTCAAAACGACATATAAAAACTCCTAAAGCTTCCACAACAGAAACACAATCCCAAACCTTAAAACGACGCAACAAAAAAAACAACACACCTCAAAACGACACAACAAAAGAACAAGAACAGCAAGAAGAATTTGAAGATTACGACGACGGAATTGATTTCCCATACGATGACCCACCATTAGTATGTTGTTTCGGAGCAGCACAGAGGGAGTTTCTCCCTACGGTGCGTGTGCAGGAGTTTCCCATGGACCCAGATATATACACAGAATGGAAGATGTTACAATGGAAGCCGCCGGAGTTCGCGCGAGCACCTGGTGGGCCACCGTCAAATGTGGCGGTGGCCCATGTGCGGTTGGGCGGACGGGCGGCTTTGTTGGGGAAAGTTGGGGAAGATGAGTTTGGGGAGGAGATGGTTTTGGGGATGAATAAGGAGAAGGTGCAGACTAGAGGGGTGAAGTTTGATTCGGGGTTTCGGACTGGGTGTAGTTATATGAAGGTGAAGTTTGATGATGATGGGAAGATGGGGATGGAGATTGTTAAGGAATGTGCTGAGGATTCTCTTAGGAGTGACGAGTTGAATCTTGCTGTTTTGAAAGAGGCTAGGATTTTCCATTTCAATTCAGAAGTTCTAACATCCCCTTCTATGGAATCAACTCTGTTCAAAGCAATAAAGTGGTCGAAGAAGTTTGGTGGCCTTGTGTTTTTCGATTTAAACTTGCCATTACCTCTGTGGAGATCACGCGATGAAACTCGAGAAATAATAAAAAAAGCATGGCAGGAAGCAGACATCATTGAAGTTTCAAGAACCGAGCTGGAATTCCTTCTAGACGAAGAACATTATGAGAGGAAGAGAAATTATAAACCACAATACTACGCTGAAGATTACGAACAAACCAAGAATCGTCAAGAGTATTACCATTACACTGCCGAGGAAATCTCGCCTTTGTGGCATGATGGACTTAAGTTCCTTTTTGTGACCGATGGAACAATTAGAATTCACTATTATACCCCTTCTTTTGACGGGGTTGTGGTTGGAACAGAAGACGTGCTCATAACTCCTTATACTTGCGATAGAACTGGCTCTGGTGATGCTATTGTGGCTGCTATTATAAGAAAACTAACCACTTGTCCAGAAATGTTTGAAGACCAAGATGTTTTGGAGAGACAGCTACGTTTCGCTATTGCAGCCGGAATTATATCGCAATGGACTATTGGTGGAGTTAGAGGTTTTCCTACCGAAAGTGCTACTCAGAATCTGAAAGAGCAAGTTTATGTACCTTCAATGTGGTGA

Protein sequence

>Msa0630990

MSSSILHHHNLLLLPLFHSPKTTSLQKPQTTLSKLNTTTSKRHIKTPKASTTETQSQTLKRRNKKNNTPQNDTTKEQEQQEEFEDYDDGIDFPYDDPPLVCCFGAAQREFLPTVRVQEFPMDPDIYTEWKMLQWKPPEFARAPGGPPSNVAVAHVRLGGRAALLGKVGEDEFGEEMVLGMNKEKVQTRGVKFDSGFRTGCSYMKVKFDDDGKMGMEIVKECAEDSLRSDELNLAVLKEARIFHFNSEVLTSPSMESTLFKAIKWSKKFGGLVFFDLNLPLPLWRSRDETREIIKKAWQEADIIEVSRTELEFLLDEEHYERKRNYKPQYYAEDYEQTKNRQEYYHYTAEEISPLWHDGLKFLFVTDGTIRIHYYTPSFDGVVVGTEDVLITPYTCDRTGSGDAIVAAIIRKLTTCPEMFEDQDVLERQLRFAIAAGIISQWTIGGVRGFPTESATQNLKEQVYVPSMW*