AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0657050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0657050 MtrunA17_Chr8g0378941 96.307 352 12 1 1 351 1 352 0.0 696
Msa0657050 MtrunA17_Chr1g0212371 34.483 203 117 5 155 344 120 319 4.22e-30 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0657050 AT4G28590.1 54.545 330 111 6 25 343 22 323 3.06e-117 343
Msa0657050 AT2G31840.1 41.436 181 89 5 173 339 152 329 9.92e-33 125
Msa0657050 AT2G31840.2 41.436 181 89 5 173 339 152 329 9.92e-33 125

Find 104 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAACTACTTACTATAAT+TGG 0.049381 4_3:-66498428 None:intergenic
GAGGACATTCTCGAACTTTC+AGG 0.153863 4_3:-66500423 None:intergenic
GTTTCTATCATCCTTATTAA+TGG 0.262268 4_3:-66498764 None:intergenic
ATTAACTACTTACTATAATT+GGG 0.280895 4_3:-66498427 None:intergenic
ACAGAACATGATATTGAAAT+AGG 0.292782 4_3:-66498640 None:intergenic
AAGGGGAGACTGAGGATAAC+TGG 0.300402 4_3:+66499184 Msa0657050:CDS
CGACCGCGCCTTGGCTTCCT+TGG 0.304224 4_3:-66498814 None:intergenic
CTATCATCATTGCTGCGTTT+TGG 0.305949 4_3:-66498982 None:intergenic
TCAATTTCTATTCAACAAAA+TGG 0.319152 4_3:+66498519 Msa0657050:exon
AAGAATCTCGAATGAGAAAA+AGG 0.321782 4_3:-66498580 None:intergenic
TGTAGGATTAGGTTCGGGTT+CGG 0.333557 4_3:-66498686 None:intergenic
GTAGGATTAGGTTCGGGTTC+GGG 0.335867 4_3:-66498685 None:intergenic
GGCTTCCTTGGAATTGTTGT+TGG 0.353522 4_3:-66498802 None:intergenic
TGAATAGAAATTGAAAACTA+TGG 0.357982 4_3:-66498510 None:intergenic
GCAACAAAATGCGGGTGCTT+TGG 0.363915 4_3:+66498906 Msa0657050:CDS
TCCACAGGGCAAATGATAAC+TGG 0.371102 4_3:+66500033 Msa0657050:intron
GGCTACAACAAGGCATATAT+TGG 0.374840 4_3:+66498359 Msa0657050:five_prime_UTR
TTTGGATGTAGGATTAGGTT+CGG 0.375242 4_3:-66498692 None:intergenic
AGAAACGAGCTAGGAGAAAG+AGG 0.387324 4_3:+66498305 Msa0657050:five_prime_UTR
GGTGCAGGAGATCAATTGTT+TGG 0.409092 4_3:+66499206 Msa0657050:CDS
GCAAGTTATAACTACCGAAA+TGG 0.414933 4_3:+66498208 Msa0657050:five_prime_UTR
CATCCGATTAAGAATGTTGT+AGG 0.416816 4_3:+66499135 Msa0657050:CDS
TCTCCTACAACATTCTTAAT+CGG 0.423496 4_3:-66499138 None:intergenic
AGAGCTGGAGAAAGCAATAA+AGG 0.432889 4_3:+66500067 Msa0657050:CDS
TGGAGAGAAGGCGGTGATTG+AGG 0.436030 4_3:+66499041 Msa0657050:CDS
TTGGAGGCATAAGAGCTGTT+TGG 0.439142 4_3:-66498549 None:intergenic
GCCTGCATGGATTGATGATA+AGG 0.442007 4_3:+66500692 Msa0657050:CDS
TAGAAATTGAAAACTATGGT+TGG 0.446812 4_3:-66498506 None:intergenic
GGAAGATGGTGGTGGAGAGA+AGG 0.455976 4_3:+66499029 Msa0657050:CDS
CCTCGTAGAAACAAAATTTG+AGG 0.457143 4_3:-66500442 None:intergenic
AGGACATTCTCGAACTTTCA+GGG 0.462386 4_3:-66500422 None:intergenic
ATGATGGTGCTGAAATTGAT+TGG 0.468138 4_3:+66499160 Msa0657050:CDS
AGAAAGCAATAAAGGTGTAC+TGG 0.471230 4_3:+66500075 Msa0657050:CDS
AAGATGGTGTACAGGGAGAA+AGG 0.474258 4_3:+66500469 Msa0657050:CDS
TGAGGAGGAGGTGGAAGAAG+AGG 0.474972 4_3:+66499008 Msa0657050:CDS
AGATGGTGTGACCATTAATA+AGG 0.476275 4_3:+66498753 Msa0657050:CDS
AGAACACGTTTGCTGCAATT+CGG 0.476704 4_3:+66498884 Msa0657050:CDS
AGAAATTGAAAACTATGGTT+GGG 0.477543 4_3:-66498505 None:intergenic
AGAGAGTGAGAGCTGGCCAT+TGG 0.480727 4_3:+66499065 Msa0657050:CDS
AATGTGATGAGTAGATAAAG+TGG 0.489173 4_3:-66498611 None:intergenic
CTAAAGATCGGTTACCTCCC+AGG 0.492013 4_3:+66500102 Msa0657050:CDS
TTGGATGTAGGATTAGGTTC+GGG 0.492104 4_3:-66498691 None:intergenic
GAGGGAATAAGATGGTGTAC+AGG 0.495962 4_3:+66500461 Msa0657050:CDS
CATTGGATACGGATGTCGGG+TGG 0.496433 4_3:+66499082 Msa0657050:CDS
ACTCAGAACTGCGGATGAGC+TGG 0.496745 4_3:+66500632 Msa0657050:CDS
GAAGAAGAGGAAGATGGTGG+TGG 0.502013 4_3:+66499021 Msa0657050:CDS
TGATGGTGCTGAAATTGATT+GGG 0.506693 4_3:+66499161 Msa0657050:CDS
GCAATTCGGCAACAAAATGC+GGG 0.507031 4_3:+66498898 Msa0657050:CDS
TGGCCATTGGATACGGATGT+CGG 0.507521 4_3:+66499078 Msa0657050:CDS
TGAGAGCTGGCCATTGGATA+CGG 0.507959 4_3:+66499071 Msa0657050:CDS
GGCCATTGGATACGGATGTC+GGG 0.512837 4_3:+66499079 Msa0657050:CDS
AAGAAGCTTCTGAGAAGAGA+AGG 0.518975 4_3:-66498384 None:intergenic
GACTGAGGATAACTGGGTGC+AGG 0.519180 4_3:+66499191 Msa0657050:CDS
TGATAGTGATGAGGAGGAGG+TGG 0.520072 4_3:+66498999 Msa0657050:CDS
ACAAGTACGATTAAAGGGCT+AGG 0.524252 4_3:-66499252 None:intergenic
GGAGATCAATTGTTTGGAGT+GGG 0.524391 4_3:+66499212 Msa0657050:CDS
TTAACTACTTACTATAATTG+GGG 0.524499 4_3:-66498426 None:intergenic
CATTAACATCGAGAAAGACT+TGG 0.524986 4_3:+66500393 Msa0657050:CDS
GTACGATTAAAGGGCTAGGA+TGG 0.528482 4_3:-66499248 None:intergenic
GAAACGAGCTAGGAGAAAGA+GGG 0.529344 4_3:+66498306 Msa0657050:five_prime_UTR
GTGCTGAAATTGATTGGGAA+GGG 0.532847 4_3:+66499166 Msa0657050:CDS
AAGAATGTTGTAGGAGATGA+TGG 0.536484 4_3:+66499144 Msa0657050:CDS
AAAAGTTTCCAACGTGGAGA+TGG 0.538979 4_3:+66498736 Msa0657050:CDS
TGCTGAAATTGATTGGGAAG+GGG 0.540914 4_3:+66499167 Msa0657050:CDS
CAACAATTCCAAGGAAGCCA+AGG 0.541191 4_3:+66498806 Msa0657050:CDS
GAGGTGGAAGAAGAGGAAGA+TGG 0.541968 4_3:+66499015 Msa0657050:CDS
AGATGGTGGTGGAGAGAAGG+CGG 0.543685 4_3:+66499032 Msa0657050:CDS
ATTGGATACGGATGTCGGGT+GGG 0.544540 4_3:+66499083 Msa0657050:CDS
TGCAATTCGGCAACAAAATG+CGG 0.545718 4_3:+66498897 Msa0657050:CDS
TTGGATACGGATGTCGGGTG+GGG 0.546849 4_3:+66499084 Msa0657050:CDS
TGATTGGGAAGGGGAGACTG+AGG 0.550882 4_3:+66499176 Msa0657050:CDS
GTGGAAGAAGAGGAAGATGG+TGG 0.551552 4_3:+66499018 Msa0657050:CDS
TTAATGTCACATGGTCCTTG+TGG 0.558893 4_3:+66500743 Msa0657050:three_prime_UTR
GCCTTATCATCAATCCATGC+AGG 0.566180 4_3:-66500693 None:intergenic
GTTTCTACGAGGGAATAAGA+TGG 0.569954 4_3:+66500453 Msa0657050:CDS
GAATCATAAAGATATAATGA+AGG 0.574940 4_3:+66498930 Msa0657050:CDS
TGATGATAGTGATGAGGAGG+AGG 0.575455 4_3:+66498996 Msa0657050:CDS
AATTTCCAACAACAATTCCA+AGG 0.578397 4_3:+66498797 Msa0657050:CDS
TTGAGGAAGAGAGTGAGAGC+TGG 0.578485 4_3:+66499058 Msa0657050:CDS
AGGGGAGACTGAGGATAACT+GGG 0.579701 4_3:+66499185 Msa0657050:CDS
AGGAGATCAATTGTTTGGAG+TGG 0.582911 4_3:+66499211 Msa0657050:CDS
CAATTAATAACGTAAATACA+AGG 0.583174 4_3:-66500715 None:intergenic
CACCCGACATCCGTATCCAA+TGG 0.587765 4_3:-66499081 None:intergenic
GGTGCTGAAATTGATTGGGA+AGG 0.593647 4_3:+66499165 Msa0657050:CDS
ACAATGCAAAGAAGCCTGCA+TGG 0.600174 4_3:+66500679 Msa0657050:CDS
TAAAGATCGGTTACCTCCCA+GGG 0.600728 4_3:+66500103 Msa0657050:CDS
CAATGATGATAGTGATGAGG+AGG 0.605683 4_3:+66498993 Msa0657050:CDS
GATATAATGAAGGACAGTGT+CGG 0.611630 4_3:+66498940 Msa0657050:CDS
TGTACTGGAGTGCTAAAGAT+CGG 0.614574 4_3:+66500090 Msa0657050:CDS
AGGGAATAAGATGGTGTACA+GGG 0.616347 4_3:+66500462 Msa0657050:CDS
GTAGAACATTCAAATAGTCA+CGG 0.620983 4_3:+66498338 Msa0657050:five_prime_UTR
TATAGAATTGCAGTGCCACA+AGG 0.627861 4_3:-66500758 None:intergenic
CAGCAATGATGATAGTGATG+AGG 0.657518 4_3:+66498990 Msa0657050:CDS
ATTCCAAGGAAGCCAAGGCG+CGG 0.658601 4_3:+66498811 Msa0657050:CDS
CAGTTGGTGCTCAAAACACG+CGG 0.659680 4_3:-66498469 None:intergenic
AAATAGTCACGGCTACAACA+AGG 0.660782 4_3:+66498349 Msa0657050:five_prime_UTR
TAAATTGACCATACCCTGGG+AGG 0.668151 4_3:-66500116 None:intergenic
AAGGCGCGGTCGTAAAAGTG+AGG 0.675835 4_3:+66498825 Msa0657050:CDS
TAAGGATGATAGAAACTCTG+AGG 0.680715 4_3:+66498771 Msa0657050:CDS
TGGTCACACCATCTCCACGT+TGG 0.708792 4_3:-66498744 None:intergenic
CTTTGCAGAACTCAGAACTG+CGG 0.713652 4_3:+66500623 Msa0657050:intron
TAAAAGATCTTATACATACG+TGG 0.722750 4_3:+66498233 Msa0657050:five_prime_UTR
AGTTGGTGCTCAAAACACGC+GGG 0.733885 4_3:-66498468 None:intergenic
AAGGGGAAAAGTTTCCAACG+TGG 0.792116 4_3:+66498730 Msa0657050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAACTACTTACTATAATT+GGG - chr4_3:66498430-66498449 None:intergenic 15.0%
!! AATTAACTACTTACTATAAT+TGG - chr4_3:66498431-66498450 None:intergenic 15.0%
!! TACTAATTCATATTCTTATA+TGG + chr4_3:66499297-66499316 Msa0657050:intron 15.0%
!! TAGTTATATATACTTGAAAT+CGG + chr4_3:66499412-66499431 Msa0657050:intron 15.0%
!!! ATAAATTACAATCATCTTTT+GGG - chr4_3:66499615-66499634 None:intergenic 15.0%
!!! AATAAATTACAATCATCTTT+TGG - chr4_3:66499616-66499635 None:intergenic 15.0%
!!! ATCATTTTTTTTTTCATTTC+AGG - chr4_3:66500183-66500202 None:intergenic 15.0%
!!! TAAGATCTTTTAATCCATTT+CGG - chr4_3:66498225-66498244 None:intergenic 20.0%
!! TTAACTACTTACTATAATTG+GGG - chr4_3:66498429-66498448 None:intergenic 20.0%
!! TGAATAGAAATTGAAAACTA+TGG - chr4_3:66498513-66498532 None:intergenic 20.0%
!! TCAATTTCTATTCAACAAAA+TGG + chr4_3:66498519-66498538 Msa0657050:exon 20.0%
!! AAACAAAAACCGAAAAATAA+GGG + chr4_3:66498712-66498731 Msa0657050:CDS 20.0%
!! GAATCATAAAGATATAATGA+AGG + chr4_3:66498930-66498949 Msa0657050:CDS 20.0%
!! AGTTATATATACTTGAAATC+GGG + chr4_3:66499413-66499432 Msa0657050:intron 20.0%
!!! TTTAAAGTAATACGTGATTA+TGG - chr4_3:66500346-66500365 None:intergenic 20.0%
!! TACTTTAAATTTCCTATTGT+AGG + chr4_3:66500357-66500376 Msa0657050:intron 20.0%
!! CAATTAATAACGTAAATACA+AGG - chr4_3:66500718-66500737 None:intergenic 20.0%
!!! ATTGTTTTTTTAATGTCACA+TGG + chr4_3:66500734-66500753 Msa0657050:exon 20.0%
! TAAAAGATCTTATACATACG+TGG + chr4_3:66498233-66498252 Msa0657050:five_prime_UTR 25.0%
! AGAAATTGAAAACTATGGTT+GGG - chr4_3:66498508-66498527 None:intergenic 25.0%
! TAGAAATTGAAAACTATGGT+TGG - chr4_3:66498509-66498528 None:intergenic 25.0%
! ACAGAACATGATATTGAAAT+AGG - chr4_3:66498643-66498662 None:intergenic 25.0%
!!! CTTATTTTTCGGTTTTTGTT+TGG - chr4_3:66498713-66498732 None:intergenic 25.0%
! CAAACAAAAACCGAAAAATA+AGG + chr4_3:66498711-66498730 Msa0657050:CDS 25.0%
! AACAAAAACCGAAAAATAAG+GGG + chr4_3:66498713-66498732 Msa0657050:CDS 25.0%
!!! AAACTTTTCCCCTTATTTTT+CGG - chr4_3:66498724-66498743 None:intergenic 25.0%
! GTTTCTATCATCCTTATTAA+TGG - chr4_3:66498767-66498786 None:intergenic 25.0%
! CAAAAACAAGTACGATTAAA+GGG - chr4_3:66499260-66499279 None:intergenic 25.0%
! TCAAAAACAAGTACGATTAA+AGG - chr4_3:66499261-66499280 None:intergenic 25.0%
! AAAGACATCTTAAAAGCAAA+AGG - chr4_3:66499588-66499607 None:intergenic 25.0%
! GATGATTGTAATTTATTCGT+AGG + chr4_3:66499619-66499638 Msa0657050:intron 25.0%
! TTATAACGCAAAAAACCAAT+AGG + chr4_3:66499651-66499670 Msa0657050:intron 25.0%
!! GATTTAGCTATAAGTTTTTG+GGG - chr4_3:66499987-66500006 None:intergenic 25.0%
!! GGATTTAGCTATAAGTTTTT+GGG - chr4_3:66499988-66500007 None:intergenic 25.0%
!! TGGATTTAGCTATAAGTTTT+TGG - chr4_3:66499989-66500008 None:intergenic 25.0%
! ATAACAAAATCAAACACCAA+AGG - chr4_3:66500013-66500032 None:intergenic 25.0%
!!! TTTGATTTTGTTATTCCACA+GGG + chr4_3:66500019-66500038 Msa0657050:intron 25.0%
! CTGATAAATAACAGAAAAGA+TGG - chr4_3:66500265-66500284 None:intergenic 25.0%
!!! AAGCATAGTTTTGTTTGTTT+TGG + chr4_3:66500535-66500554 Msa0657050:intron 25.0%
GTAGAACATTCAAATAGTCA+CGG + chr4_3:66498338-66498357 Msa0657050:five_prime_UTR 30.0%
!! GGGTAATTTTAACAAACAGT+TGG - chr4_3:66498488-66498507 None:intergenic 30.0%
AAGAATCTCGAATGAGAAAA+AGG - chr4_3:66498583-66498602 None:intergenic 30.0%
AATGTGATGAGTAGATAAAG+TGG - chr4_3:66498614-66498633 None:intergenic 30.0%
!! TTTTGTTTGGATGTAGGATT+AGG - chr4_3:66498700-66498719 None:intergenic 30.0%
AATTTCCAACAACAATTCCA+AGG + chr4_3:66498797-66498816 Msa0657050:CDS 30.0%
TCTCCTACAACATTCTTAAT+CGG - chr4_3:66499141-66499160 None:intergenic 30.0%
!!! TTGTTTTTGAACGCTATAAC+AGG + chr4_3:66499271-66499290 Msa0657050:CDS 30.0%
CTTCTATGCTAAGTGTTTAA+TGG + chr4_3:66499375-66499394 Msa0657050:intron 30.0%
AACTCTAGACTCAGATTAAT+CGG + chr4_3:66499462-66499481 Msa0657050:intron 30.0%
AATTCCAACATAGGTAACTT+GGG - chr4_3:66499821-66499840 None:intergenic 30.0%
TAATTCCAACATAGGTAACT+TGG - chr4_3:66499822-66499841 None:intergenic 30.0%
!!! TCGCATTTTAATTCCAACAT+AGG - chr4_3:66499830-66499849 None:intergenic 30.0%
TGAATAGTCTCACATTAGTT+AGG + chr4_3:66499851-66499870 Msa0657050:intron 30.0%
!!! GTTTGATTTTGTTATTCCAC+AGG + chr4_3:66500018-66500037 Msa0657050:intron 30.0%
AAATAAATTGACCATACCCT+GGG - chr4_3:66500122-66500141 None:intergenic 30.0%
AAAATAAATTGACCATACCC+TGG - chr4_3:66500123-66500142 None:intergenic 30.0%
!!! CTCAAATTTTGTTTCTACGA+GGG + chr4_3:66500443-66500462 Msa0657050:CDS 30.0%
!!! TTTTGTTTGTTTTGGCAACA+AGG + chr4_3:66500543-66500562 Msa0657050:intron 30.0%
GCAAGTTATAACTACCGAAA+TGG + chr4_3:66498208-66498227 Msa0657050:five_prime_UTR 35.0%
!! TAGCTCGTTTCTTTTTGGTA+AGG - chr4_3:66498297-66498316 None:intergenic 35.0%
TTACCAAAAAGAAACGAGCT+AGG + chr4_3:66498296-66498315 Msa0657050:five_prime_UTR 35.0%
TTTGGATGTAGGATTAGGTT+CGG - chr4_3:66498695-66498714 None:intergenic 35.0%
!! TTCGGTTTTTGTTTGGATGT+AGG - chr4_3:66498706-66498725 None:intergenic 35.0%
AGATGGTGTGACCATTAATA+AGG + chr4_3:66498753-66498772 Msa0657050:CDS 35.0%
TAAGGATGATAGAAACTCTG+AGG + chr4_3:66498771-66498790 Msa0657050:CDS 35.0%
GATATAATGAAGGACAGTGT+CGG + chr4_3:66498940-66498959 Msa0657050:CDS 35.0%
CATCCGATTAAGAATGTTGT+AGG + chr4_3:66499135-66499154 Msa0657050:CDS 35.0%
AAGAATGTTGTAGGAGATGA+TGG + chr4_3:66499144-66499163 Msa0657050:CDS 35.0%
! ATGATGGTGCTGAAATTGAT+TGG + chr4_3:66499160-66499179 Msa0657050:CDS 35.0%
! TGATGGTGCTGAAATTGATT+GGG + chr4_3:66499161-66499180 Msa0657050:CDS 35.0%
AAAACCAATAGGTCGAATGT+AGG + chr4_3:66499662-66499681 Msa0657050:intron 35.0%
TATTCCTACATTCGACCTAT+TGG - chr4_3:66499669-66499688 None:intergenic 35.0%
AATTCCCAAGTTACCTATGT+TGG + chr4_3:66499814-66499833 Msa0657050:intron 35.0%
AGTCTCACATTAGTTAGGAT+TGG + chr4_3:66499856-66499875 Msa0657050:intron 35.0%
GTCTCACATTAGTTAGGATT+GGG + chr4_3:66499857-66499876 Msa0657050:intron 35.0%
TTATAGCTAAATCCAGCCTT+TGG + chr4_3:66499994-66500013 Msa0657050:intron 35.0%
CTGGAAAAATTTGAAAGAGC+TGG + chr4_3:66500052-66500071 Msa0657050:CDS 35.0%
! AGAAAGCAATAAAGGTGTAC+TGG + chr4_3:66500075-66500094 Msa0657050:CDS 35.0%
TAGTGAGTGATCATGAAGTA+AGG - chr4_3:66500228-66500247 None:intergenic 35.0%
CAATCTTAATCGCCTACAAT+AGG - chr4_3:66500372-66500391 None:intergenic 35.0%
CATTAACATCGAGAAAGACT+TGG + chr4_3:66500393-66500412 Msa0657050:CDS 35.0%
CCTCGTAGAAACAAAATTTG+AGG - chr4_3:66500445-66500464 None:intergenic 35.0%
!!! CCTCAAATTTTGTTTCTACG+AGG + chr4_3:66500442-66500461 Msa0657050:CDS 35.0%
GCTTATTGTACACACATTGA+AGG - chr4_3:66500519-66500538 None:intergenic 35.0%
! TCTCCTAGCTCGTTTCTTTT+TGG - chr4_3:66498302-66498321 None:intergenic 40.0%
AAATAGTCACGGCTACAACA+AGG + chr4_3:66498349-66498368 Msa0657050:five_prime_UTR 40.0%
GGCTACAACAAGGCATATAT+TGG + chr4_3:66498359-66498378 Msa0657050:five_prime_UTR 40.0%
! AAGAAGCTTCTGAGAAGAGA+AGG - chr4_3:66498387-66498406 None:intergenic 40.0%
TGAGAAAAAGGTGAGAACGT+TGG - chr4_3:66498571-66498590 None:intergenic 40.0%
TTGGATGTAGGATTAGGTTC+GGG - chr4_3:66498694-66498713 None:intergenic 40.0%
AAAAGTTTCCAACGTGGAGA+TGG + chr4_3:66498736-66498755 Msa0657050:CDS 40.0%
! AGAACACGTTTGCTGCAATT+CGG + chr4_3:66498884-66498903 Msa0657050:CDS 40.0%
TGCAATTCGGCAACAAAATG+CGG + chr4_3:66498897-66498916 Msa0657050:CDS 40.0%
! CTATCATCATTGCTGCGTTT+TGG - chr4_3:66498985-66499004 None:intergenic 40.0%
! CAGCAATGATGATAGTGATG+AGG + chr4_3:66498990-66499009 Msa0657050:CDS 40.0%
! CAATGATGATAGTGATGAGG+AGG + chr4_3:66498993-66499012 Msa0657050:CDS 40.0%
GTGCTGAAATTGATTGGGAA+GGG + chr4_3:66499166-66499185 Msa0657050:CDS 40.0%
TGCTGAAATTGATTGGGAAG+GGG + chr4_3:66499167-66499186 Msa0657050:CDS 40.0%
AGGAGATCAATTGTTTGGAG+TGG + chr4_3:66499211-66499230 Msa0657050:CDS 40.0%
! GGAGATCAATTGTTTGGAGT+GGG + chr4_3:66499212-66499231 Msa0657050:CDS 40.0%
ACAAGTACGATTAAAGGGCT+AGG - chr4_3:66499255-66499274 None:intergenic 40.0%
CAAAATCAAACACCAAAGGC+TGG - chr4_3:66500009-66500028 None:intergenic 40.0%
AGAGCTGGAGAAAGCAATAA+AGG + chr4_3:66500067-66500086 Msa0657050:CDS 40.0%
! TGTACTGGAGTGCTAAAGAT+CGG + chr4_3:66500090-66500109 Msa0657050:CDS 40.0%
CAGTACACAAGTGTTACAAG+CGG + chr4_3:66500282-66500301 Msa0657050:intron 40.0%
! AAGAGACTCCAGGTGTTATA+TGG - chr4_3:66500316-66500335 None:intergenic 40.0%
AGGACATTCTCGAACTTTCA+GGG - chr4_3:66500425-66500444 None:intergenic 40.0%
GTTTCTACGAGGGAATAAGA+TGG + chr4_3:66500453-66500472 Msa0657050:CDS 40.0%
AGGGAATAAGATGGTGTACA+GGG + chr4_3:66500462-66500481 Msa0657050:CDS 40.0%
AGCAACAGTGCATCATTATG+AGG - chr4_3:66500598-66500617 None:intergenic 40.0%
TTAATGTCACATGGTCCTTG+TGG + chr4_3:66500743-66500762 Msa0657050:three_prime_UTR 40.0%
TATAGAATTGCAGTGCCACA+AGG - chr4_3:66500761-66500780 None:intergenic 40.0%
AGAAACGAGCTAGGAGAAAG+AGG + chr4_3:66498305-66498324 Msa0657050:five_prime_UTR 45.0%
GAAACGAGCTAGGAGAAAGA+GGG + chr4_3:66498306-66498325 Msa0657050:five_prime_UTR 45.0%
! TTGGAGGCATAAGAGCTGTT+TGG - chr4_3:66498552-66498571 None:intergenic 45.0%
GAAAAAGGTGAGAACGTTGG+AGG - chr4_3:66498568-66498587 None:intergenic 45.0%
! TGTAGGATTAGGTTCGGGTT+CGG - chr4_3:66498689-66498708 None:intergenic 45.0%
AAGGGGAAAAGTTTCCAACG+TGG + chr4_3:66498730-66498749 Msa0657050:CDS 45.0%
GGCTTCCTTGGAATTGTTGT+TGG - chr4_3:66498805-66498824 None:intergenic 45.0%
CAACAATTCCAAGGAAGCCA+AGG + chr4_3:66498806-66498825 Msa0657050:CDS 45.0%
! AGATTTTGTACGCGACAGAC+TGG + chr4_3:66498861-66498880 Msa0657050:CDS 45.0%
GCAATTCGGCAACAAAATGC+GGG + chr4_3:66498898-66498917 Msa0657050:CDS 45.0%
! TGATGATAGTGATGAGGAGG+AGG + chr4_3:66498996-66499015 Msa0657050:CDS 45.0%
! GGTGCTGAAATTGATTGGGA+AGG + chr4_3:66499165-66499184 Msa0657050:CDS 45.0%
GGTGCAGGAGATCAATTGTT+TGG + chr4_3:66499206-66499225 Msa0657050:CDS 45.0%
GTACGATTAAAGGGCTAGGA+TGG - chr4_3:66499251-66499270 None:intergenic 45.0%
TTGGGGAGTCTAGAAACATC+AGG - chr4_3:66499970-66499989 None:intergenic 45.0%
TCCACAGGGCAAATGATAAC+TGG + chr4_3:66500033-66500052 Msa0657050:intron 45.0%
TCCAGTTATCATTTGCCCTG+TGG - chr4_3:66500037-66500056 None:intergenic 45.0%
TAAAGATCGGTTACCTCCCA+GGG + chr4_3:66500103-66500122 Msa0657050:CDS 45.0%
TAAATTGACCATACCCTGGG+AGG - chr4_3:66500119-66500138 None:intergenic 45.0%
TAACCTCGCCATATAACACC+TGG + chr4_3:66500305-66500324 Msa0657050:intron 45.0%
TGGAAAACGTAAGAGACTCC+AGG - chr4_3:66500326-66500345 None:intergenic 45.0%
GAGGACATTCTCGAACTTTC+AGG - chr4_3:66500426-66500445 None:intergenic 45.0%
GAGGGAATAAGATGGTGTAC+AGG + chr4_3:66500461-66500480 Msa0657050:CDS 45.0%
AAGATGGTGTACAGGGAGAA+AGG + chr4_3:66500469-66500488 Msa0657050:CDS 45.0%
CTTTGCAGAACTCAGAACTG+CGG + chr4_3:66500623-66500642 Msa0657050:intron 45.0%
ACAATGCAAAGAAGCCTGCA+TGG + chr4_3:66500679-66500698 Msa0657050:CDS 45.0%
! GCCTGCATGGATTGATGATA+AGG + chr4_3:66500692-66500711 Msa0657050:CDS 45.0%
GCCTTATCATCAATCCATGC+AGG - chr4_3:66500696-66500715 None:intergenic 45.0%
!! TAAATAAATGATATATAAAA+AGG + chr4_3:66499881-66499900 Msa0657050:intron 5.0%
! AGTTGGTGCTCAAAACACGC+GGG - chr4_3:66498471-66498490 None:intergenic 50.0%
! CAGTTGGTGCTCAAAACACG+CGG - chr4_3:66498472-66498491 None:intergenic 50.0%
! GTAGGATTAGGTTCGGGTTC+GGG - chr4_3:66498688-66498707 None:intergenic 50.0%
GCAACAAAATGCGGGTGCTT+TGG + chr4_3:66498906-66498925 Msa0657050:CDS 50.0%
! TGATAGTGATGAGGAGGAGG+TGG + chr4_3:66498999-66499018 Msa0657050:CDS 50.0%
GAGGTGGAAGAAGAGGAAGA+TGG + chr4_3:66499015-66499034 Msa0657050:CDS 50.0%
GTGGAAGAAGAGGAAGATGG+TGG + chr4_3:66499018-66499037 Msa0657050:CDS 50.0%
! GAAGAAGAGGAAGATGGTGG+TGG + chr4_3:66499021-66499040 Msa0657050:CDS 50.0%
TTGAGGAAGAGAGTGAGAGC+TGG + chr4_3:66499058-66499077 Msa0657050:CDS 50.0%
TGAGAGCTGGCCATTGGATA+CGG + chr4_3:66499071-66499090 Msa0657050:CDS 50.0%
TGGCCATTGGATACGGATGT+CGG + chr4_3:66499078-66499097 Msa0657050:CDS 50.0%
ATTGGATACGGATGTCGGGT+GGG + chr4_3:66499083-66499102 Msa0657050:CDS 50.0%
AAGGGGAGACTGAGGATAAC+TGG + chr4_3:66499184-66499203 Msa0657050:CDS 50.0%
AGGGGAGACTGAGGATAACT+GGG + chr4_3:66499185-66499204 Msa0657050:CDS 50.0%
CTAAAGATCGGTTACCTCCC+AGG + chr4_3:66500102-66500121 Msa0657050:CDS 50.0%
! ACTCCAGGTGTTATATGGCG+AGG - chr4_3:66500311-66500330 None:intergenic 50.0%
TGGTCACACCATCTCCACGT+TGG - chr4_3:66498747-66498766 None:intergenic 55.0%
ATTCCAAGGAAGCCAAGGCG+CGG + chr4_3:66498811-66498830 Msa0657050:CDS 55.0%
!! TCACTTTTACGACCGCGCCT+TGG - chr4_3:66498826-66498845 None:intergenic 55.0%
AAGGCGCGGTCGTAAAAGTG+AGG + chr4_3:66498825-66498844 Msa0657050:CDS 55.0%
TGAGGAGGAGGTGGAAGAAG+AGG + chr4_3:66499008-66499027 Msa0657050:CDS 55.0%
!! GGAAGATGGTGGTGGAGAGA+AGG + chr4_3:66499029-66499048 Msa0657050:CDS 55.0%
!! AGATGGTGGTGGAGAGAAGG+CGG + chr4_3:66499032-66499051 Msa0657050:CDS 55.0%
TGGAGAGAAGGCGGTGATTG+AGG + chr4_3:66499041-66499060 Msa0657050:CDS 55.0%
AGAGAGTGAGAGCTGGCCAT+TGG + chr4_3:66499065-66499084 Msa0657050:CDS 55.0%
GGCCATTGGATACGGATGTC+GGG + chr4_3:66499079-66499098 Msa0657050:CDS 55.0%
CACCCGACATCCGTATCCAA+TGG - chr4_3:66499084-66499103 None:intergenic 55.0%
CATTGGATACGGATGTCGGG+TGG + chr4_3:66499082-66499101 Msa0657050:CDS 55.0%
TTGGATACGGATGTCGGGTG+GGG + chr4_3:66499084-66499103 Msa0657050:CDS 55.0%
TGATTGGGAAGGGGAGACTG+AGG + chr4_3:66499176-66499195 Msa0657050:CDS 55.0%
GACTGAGGATAACTGGGTGC+AGG + chr4_3:66499191-66499210 Msa0657050:CDS 55.0%
! CTGAGTCTAGAGTTGCACGC+AGG - chr4_3:66499456-66499475 None:intergenic 55.0%
ATCGGTTACCTCCCAGGGTA+TGG + chr4_3:66500108-66500127 Msa0657050:intron 55.0%
ACTCAGAACTGCGGATGAGC+TGG + chr4_3:66500632-66500651 Msa0657050:CDS 55.0%
CGACCGCGCCTTGGCTTCCT+TGG - chr4_3:66498817-66498836 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 66498198 66500851 66498198 ID=Msa0657050;Name=Msa0657050
chr4_3 mRNA 66498198 66500851 66498198 ID=Msa0657050-mRNA-1;Parent=Msa0657050;Name=Msa0657050-mRNA-1;_AED=0.02;_eAED=0.02;_QI=340|1|1|1|1|1|4|117|351
chr4_3 exon 66498198 66499292 66498198 ID=Msa0657050-mRNA-1:exon:19130;Parent=Msa0657050-mRNA-1
chr4_3 exon 66500040 66500124 66500040 ID=Msa0657050-mRNA-1:exon:19131;Parent=Msa0657050-mRNA-1
chr4_3 exon 66500379 66500490 66500379 ID=Msa0657050-mRNA-1:exon:19132;Parent=Msa0657050-mRNA-1
chr4_3 exon 66500631 66500851 66500631 ID=Msa0657050-mRNA-1:exon:19133;Parent=Msa0657050-mRNA-1
chr4_3 five_prime_UTR 66498198 66498537 66498198 ID=Msa0657050-mRNA-1:five_prime_utr;Parent=Msa0657050-mRNA-1
chr4_3 CDS 66498538 66499292 66498538 ID=Msa0657050-mRNA-1:cds;Parent=Msa0657050-mRNA-1
chr4_3 CDS 66500040 66500124 66500040 ID=Msa0657050-mRNA-1:cds;Parent=Msa0657050-mRNA-1
chr4_3 CDS 66500379 66500490 66500379 ID=Msa0657050-mRNA-1:cds;Parent=Msa0657050-mRNA-1
chr4_3 CDS 66500631 66500734 66500631 ID=Msa0657050-mRNA-1:cds;Parent=Msa0657050-mRNA-1
chr4_3 three_prime_UTR 66500735 66500851 66500735 ID=Msa0657050-mRNA-1:three_prime_utr;Parent=Msa0657050-mRNA-1
Gene Sequence

>Msa0657050

ATGGTCATTCTCCAAACAGCTCTTATGCCTCCAACGTTCTCACCTTTTTCTCATTCGAGATTCTTATCTTATTCCACTTTATCTACTCATCACATTGTAAAGCCTATTTCAATATCATGTTCTGTTTCAACTAACTCTAGTTCAAAACCCGAACCCGAACCTAATCCTACATCCAAACAAAAACCGAAAAATAAGGGGAAAAGTTTCCAACGTGGAGATGGTGTGACCATTAATAAGGATGATAGAAACTCTGAGGATGAATTTCCAACAACAATTCCAAGGAAGCCAAGGCGCGGTCGTAAAAGTGAGGCTATGAAAGTTGAAGATTTTGTACGCGACAGACTGGAGAACACGTTTGCTGCAATTCGGCAACAAAATGCGGGTGCTTTGGAGAATCATAAAGATATAATGAAGGACAGTGTCGGTGATGATTCTGAATCAAAACCAAAACGCAGCAATGATGATAGTGATGAGGAGGAGGTGGAAGAAGAGGAAGATGGTGGTGGAGAGAAGGCGGTGATTGAGGAAGAGAGTGAGAGCTGGCCATTGGATACGGATGTCGGGTGGGGAATAAGAGCTTCTGAGTATTTTGAGAAGCATCCGATTAAGAATGTTGTAGGAGATGATGGTGCTGAAATTGATTGGGAAGGGGAGACTGAGGATAACTGGGTGCAGGAGATCAATTGTTTGGAGTGGGAGAGTTTTGCTTTCCATCCTAGCCCTTTAATCGTACTTGTTTTTGAACGCTATAACAGGGCAAATGATAACTGGAAAAATTTGAAAGAGCTGGAGAAAGCAATAAAGGTGTACTGGAGTGCTAAAGATCGGTTACCTCCCAGGGCGATTAAGATTGACATTAACATCGAGAAAGACTTGGCTTATGCCCTGAAAGTTCGAGAATGTCCTCAAATTTTGTTTCTACGAGGGAATAAGATGGTGTACAGGGAGAAAGAACTCAGAACTGCGGATGAGCTGGTTCAGATGATTGCATTTTTTTATTACAATGCAAAGAAGCCTGCATGGATTGATGATAAGGCCTTGTATTTACGTTATTAA

Protein sequence

>Msa0657050

MVILQTALMPPTFSPFSHSRFLSYSTLSTHHIVKPISISCSVSTNSSSKPEPEPNPTSKQKPKNKGKSFQRGDGVTINKDDRNSEDEFPTTIPRKPRRGRKSEAMKVEDFVRDRLENTFAAIRQQNAGALENHKDIMKDSVGDDSESKPKRSNDDSDEEEVEEEEDGGGEKAVIEEESESWPLDTDVGWGIRASEYFEKHPIKNVVGDDGAEIDWEGETEDNWVQEINCLEWESFAFHPSPLIVLVFERYNRANDNWKNLKELEKAIKVYWSAKDRLPPRAIKIDINIEKDLAYALKVRECPQILFLRGNKMVYREKELRTADELVQMIAFFYYNAKKPAWIDDKALYLRY*