AlfalfaGEDB | Msa0657050

M. sativa cultivar zhongmu-4 / Msa0657050

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0657050	XP_003629744.1	96.307	352	12	1	1	351	1	352	0.0	696

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0657050	sp\|F4JLC1\|MRL7_ARATH	54.545	330	111	6	25	343	22	323	3.01e-116	343

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0657050	-0.803052	4.189547e-49	-8.615850e-47
Msa0000780	Msa0657050	0.841544	4.456389e-58	-8.615850e-47
Msa0001950	Msa0657050	0.838429	2.890595e-57	-8.615850e-47
Msa0006700	Msa0657050	0.821605	3.694466e-53	-8.615850e-47
Msa0008850	Msa0657050	0.810915	9.090587e-51	-8.615850e-47
Msa0013050	Msa0657050	-0.803230	3.849589e-49	-8.615850e-47
Msa0017120	Msa0657050	0.815525	8.839437e-52	-8.615850e-47
Msa0017940	Msa0657050	0.802371	5.792088e-49	-8.615850e-47
Msa0020630	Msa0657050	0.876188	1.703064e-68	-8.615850e-47
Msa0024680	Msa0657050	0.823412	1.404453e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0657050	MtrunA17_Chr8g0378941	96.307	352	12	1	1	351	1	352	0.0	696
Msa0657050	MtrunA17_Chr1g0212371	34.483	203	117	5	155	344	120	319	4.22e-30	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0657050	AT4G28590.1	54.545	330	111	6	25	343	22	323	3.06e-117	343
Msa0657050	AT2G31840.1	41.436	181	89	5	173	339	152	329	9.92e-33	125
Msa0657050	AT2G31840.2	41.436	181	89	5	173	339	152	329	9.92e-33	125

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Find 104 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTTCCAACGTGGAGA+TGG	0.538979	4_3:+66498736	Msa0657050:CDS
AAATAGTCACGGCTACAACA+AGG	0.660782	4_3:+66498349	Msa0657050:five_prime_UTR
AAGAAGCTTCTGAGAAGAGA+AGG	0.518975	4_3:-66498384	None:intergenic
AAGAATCTCGAATGAGAAAA+AGG	0.321782	4_3:-66498580	None:intergenic
AAGAATGTTGTAGGAGATGA+TGG	0.536484	4_3:+66499144	Msa0657050:CDS
AAGATGGTGTACAGGGAGAA+AGG	0.474258	4_3:+66500469	Msa0657050:CDS
AAGGCGCGGTCGTAAAAGTG+AGG	0.675835	4_3:+66498825	Msa0657050:CDS
AAGGGGAAAAGTTTCCAACG+TGG	0.792116	4_3:+66498730	Msa0657050:CDS
AAGGGGAGACTGAGGATAAC+TGG	0.300402	4_3:+66499184	Msa0657050:CDS
AATGTGATGAGTAGATAAAG+TGG	0.489173	4_3:-66498611	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTAGAACATTCAAATAGTCA+CGG	+	chr4_3:66498338-66498357	Msa0657050:five_prime_UTR	30.0%
AAGAATCTCGAATGAGAAAA+AGG	-	chr4_3:66498583-66498602	None:intergenic	30.0%
AATGTGATGAGTAGATAAAG+TGG	-	chr4_3:66498614-66498633	None:intergenic	30.0%
AATTTCCAACAACAATTCCA+AGG	+	chr4_3:66498797-66498816	Msa0657050:CDS	30.0%
TCTCCTACAACATTCTTAAT+CGG	-	chr4_3:66499141-66499160	None:intergenic	30.0%
CTTCTATGCTAAGTGTTTAA+TGG	+	chr4_3:66499375-66499394	Msa0657050:intron	30.0%
AACTCTAGACTCAGATTAAT+CGG	+	chr4_3:66499462-66499481	Msa0657050:intron	30.0%
AATTCCAACATAGGTAACTT+GGG	-	chr4_3:66499821-66499840	None:intergenic	30.0%
TAATTCCAACATAGGTAACT+TGG	-	chr4_3:66499822-66499841	None:intergenic	30.0%
TGAATAGTCTCACATTAGTT+AGG	+	chr4_3:66499851-66499870	Msa0657050:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	66498198	66500851	66498198	ID=Msa0657050;Name=Msa0657050
chr4_3	mRNA	66498198	66500851	66498198	ID=Msa0657050-mRNA-1;Parent=Msa0657050;Name=Msa0657050-mRNA-1;_AED=0.02;_eAED=0.02;_QI=340\|1\|1\|1\|1\|1\|4\|117\|351
chr4_3	exon	66498198	66499292	66498198	ID=Msa0657050-mRNA-1:exon:19130;Parent=Msa0657050-mRNA-1
chr4_3	exon	66500040	66500124	66500040	ID=Msa0657050-mRNA-1:exon:19131;Parent=Msa0657050-mRNA-1
chr4_3	exon	66500379	66500490	66500379	ID=Msa0657050-mRNA-1:exon:19132;Parent=Msa0657050-mRNA-1
chr4_3	exon	66500631	66500851	66500631	ID=Msa0657050-mRNA-1:exon:19133;Parent=Msa0657050-mRNA-1
chr4_3	five_prime_UTR	66498198	66498537	66498198	ID=Msa0657050-mRNA-1:five_prime_utr;Parent=Msa0657050-mRNA-1
chr4_3	CDS	66498538	66499292	66498538	ID=Msa0657050-mRNA-1:cds;Parent=Msa0657050-mRNA-1
chr4_3	CDS	66500040	66500124	66500040	ID=Msa0657050-mRNA-1:cds;Parent=Msa0657050-mRNA-1
chr4_3	CDS	66500379	66500490	66500379	ID=Msa0657050-mRNA-1:cds;Parent=Msa0657050-mRNA-1
chr4_3	CDS	66500631	66500734	66500631	ID=Msa0657050-mRNA-1:cds;Parent=Msa0657050-mRNA-1
chr4_3	three_prime_UTR	66500735	66500851	66500735	ID=Msa0657050-mRNA-1:three_prime_utr;Parent=Msa0657050-mRNA-1

Gene Sequence

>Msa0657050

ATGGTCATTCTCCAAACAGCTCTTATGCCTCCAACGTTCTCACCTTTTTCTCATTCGAGATTCTTATCTTATTCCACTTTATCTACTCATCACATTGTAAAGCCTATTTCAATATCATGTTCTGTTTCAACTAACTCTAGTTCAAAACCCGAACCCGAACCTAATCCTACATCCAAACAAAAACCGAAAAATAAGGGGAAAAGTTTCCAACGTGGAGATGGTGTGACCATTAATAAGGATGATAGAAACTCTGAGGATGAATTTCCAACAACAATTCCAAGGAAGCCAAGGCGCGGTCGTAAAAGTGAGGCTATGAAAGTTGAAGATTTTGTACGCGACAGACTGGAGAACACGTTTGCTGCAATTCGGCAACAAAATGCGGGTGCTTTGGAGAATCATAAAGATATAATGAAGGACAGTGTCGGTGATGATTCTGAATCAAAACCAAAACGCAGCAATGATGATAGTGATGAGGAGGAGGTGGAAGAAGAGGAAGATGGTGGTGGAGAGAAGGCGGTGATTGAGGAAGAGAGTGAGAGCTGGCCATTGGATACGGATGTCGGGTGGGGAATAAGAGCTTCTGAGTATTTTGAGAAGCATCCGATTAAGAATGTTGTAGGAGATGATGGTGCTGAAATTGATTGGGAAGGGGAGACTGAGGATAACTGGGTGCAGGAGATCAATTGTTTGGAGTGGGAGAGTTTTGCTTTCCATCCTAGCCCTTTAATCGTACTTGTTTTTGAACGCTATAACAGGGCAAATGATAACTGGAAAAATTTGAAAGAGCTGGAGAAAGCAATAAAGGTGTACTGGAGTGCTAAAGATCGGTTACCTCCCAGGGCGATTAAGATTGACATTAACATCGAGAAAGACTTGGCTTATGCCCTGAAAGTTCGAGAATGTCCTCAAATTTTGTTTCTACGAGGGAATAAGATGGTGTACAGGGAGAAAGAACTCAGAACTGCGGATGAGCTGGTTCAGATGATTGCATTTTTTTATTACAATGCAAAGAAGCCTGCATGGATTGATGATAAGGCCTTGTATTTACGTTATTAA

Protein sequence

>Msa0657050

MVILQTALMPPTFSPFSHSRFLSYSTLSTHHIVKPISISCSVSTNSSSKPEPEPNPTSKQKPKNKGKSFQRGDGVTINKDDRNSEDEFPTTIPRKPRRGRKSEAMKVEDFVRDRLENTFAAIRQQNAGALENHKDIMKDSVGDDSESKPKRSNDDSDEEEVEEEEDGGGEKAVIEEESESWPLDTDVGWGIRASEYFEKHPIKNVVGDDGAEIDWEGETEDNWVQEINCLEWESFAFHPSPLIVLVFERYNRANDNWKNLKELEKAIKVYWSAKDRLPPRAIKIDINIEKDLAYALKVRECPQILFLRGNKMVYREKELRTADELVQMIAFFYYNAKKPAWIDDKALYLRY*