AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0571610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0571610 MtrunA17_Chr8g0386951 97.463 749 19 0 1 749 1 749 0.0 1494
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0571610 AT1G63680.1 68.846 780 194 12 1 749 1 762 0.0 1010
Msa0571610 AT1G63680.3 68.846 780 194 12 1 749 1 762 0.0 1010
Msa0571610 AT1G63680.2 68.846 780 194 12 1 749 1 762 0.0 1010

Find 255 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGAATTCAACATGATTCT+AGG 0.209520 4_1:+74300587 Msa0571610:CDS
AATCAGTTGGATTCGTCTTA+TGG 0.216741 4_1:+74300961 Msa0571610:CDS
TGGGGTTCTGGATGCTGTTT+TGG 0.247514 4_1:+74300981 Msa0571610:CDS
TACTTGAGAACAACATATTT+TGG 0.249300 4_1:+74304214 Msa0571610:three_prime_UTR
TTGTTCTCAAGTACACTTCT+AGG 0.250600 4_1:-74304204 None:intergenic
TGATAGGGGCCTTTCTTTGC+AGG 0.258876 4_1:+74303805 Msa0571610:three_prime_UTR
CTTCTATTTGATATGTTTCA+TGG 0.262320 4_1:-74303410 None:intergenic
AACAGCTTCAATTTCGGATT+TGG 0.263849 4_1:-74300290 None:intergenic
CTCTTCAACAGCTTCAATTT+CGG 0.267858 4_1:-74300296 None:intergenic
CATTGCTGTTGGGGCACCCT+TGG 0.269688 4_1:+74301452 Msa0571610:CDS
GATGAGTTTAGCTGAGCTTT+TGG 0.274198 4_1:+74300510 Msa0571610:CDS
GAGTTGGATTTGTTGGTATT+TGG 0.276747 4_1:-74300059 None:intergenic
GAAGAGGTTGATGCAGTTCC+TGG 0.277253 4_1:+74301495 Msa0571610:CDS
CTGTTGCTATCTTTGTCATC+AGG 0.281451 4_1:-74301878 None:intergenic
AATTTGGAAGTTGAAATTAA+TGG 0.284196 4_1:+74300568 Msa0571610:CDS
TGTTTCGGTTTACGGGAATT+TGG 0.293661 4_1:+74300552 Msa0571610:CDS
TCAAATAGAAGGTGAGAAAA+AGG 0.297061 4_1:+74303422 Msa0571610:CDS
TGGCAGTTGGCATTGCTGTT+GGG 0.297200 4_1:+74301442 Msa0571610:CDS
TCGGGTGGGTCGTCGTCAGC+TGG 0.315585 4_1:-74300007 None:intergenic
ATTGATATTGAAGATACTTT+AGG 0.316478 4_1:+74300724 Msa0571610:CDS
ATGCAAGAGTATCTGAAATA+TGG 0.320054 4_1:+74302144 Msa0571610:CDS
TGCGCCTTTGTTCGTTTCAA+TGG 0.326884 4_1:+74301239 Msa0571610:CDS
GTGGTTCCTGTTTCGGTTTA+CGG 0.327895 4_1:+74300544 Msa0571610:CDS
GATAATCTAGCCTGCTTGAT+TGG 0.330489 4_1:-74304097 None:intergenic
TACTTTAGGTTGTAAGGCTT+TGG 0.331424 4_1:+74300738 Msa0571610:CDS
CGGCTTGGAGTTGGATTTGT+TGG 0.335195 4_1:-74300066 None:intergenic
GATTCTAGGCTTGTTACTTC+TGG 0.335990 4_1:+74300601 Msa0571610:CDS
TAATACACCTGCTGGGATAC+TGG 0.337449 4_1:+74301365 Msa0571610:CDS
TGAAGATACTTTAGGTTGTA+AGG 0.337482 4_1:+74300732 Msa0571610:CDS
ACGGGCCTTTCGGTTATGAT+AGG 0.338458 4_1:+74303789 Msa0571610:three_prime_UTR
TGGTTCCTGTTTCGGTTTAC+GGG 0.342723 4_1:+74300545 Msa0571610:CDS
AAGTCTGGTGGTGGTTGAAT+TGG 0.344484 4_1:-74299876 None:intergenic
GCGCCTTTGTTCGTTTCAAT+GGG 0.352036 4_1:+74301240 Msa0571610:CDS
AGGTTCGTCGGGAGCGTCTT+GGG 0.352375 4_1:-74300161 None:intergenic
GAGTAAAGTGGTTCCTGTTT+CGG 0.355296 4_1:+74300537 Msa0571610:CDS
ATGGCTCTTATTGGGATAAC+GGG 0.357306 4_1:+74300832 Msa0571610:CDS
ATCAGTTGGATTCGTCTTAT+GGG 0.358561 4_1:+74300962 Msa0571610:CDS
GTGAGGTGAGGGGTTTGTAT+GGG 0.359546 4_1:-74299737 None:intergenic
GGATTCGTCTTATGGGGTTC+TGG 0.360276 4_1:+74300969 Msa0571610:CDS
TTCTTCGCGCGGATTGGCTC+AGG 0.360852 4_1:+74301062 Msa0571610:CDS
TTGACGAGGAACAAGCATTT+GGG 0.363745 4_1:+74301532 Msa0571610:CDS
ATTTCGGATTTGGCGGGATT+AGG 0.364946 4_1:-74300280 None:intergenic
AGTGAGGTGAGGGGTTTGTA+TGG 0.366586 4_1:-74299738 None:intergenic
ATTGGGATAACGGGGACTTA+TGG 0.366671 4_1:+74300841 Msa0571610:CDS
ATTGACGAGGAACAAGCATT+TGG 0.368221 4_1:+74301531 Msa0571610:CDS
GCTAAACTCATCTTAAACTT+AGG 0.371166 4_1:-74300499 None:intergenic
GGGAGGGCGGAGAGGAAGTA+AGG 0.374763 4_1:-74299948 None:intergenic
CCCTTGGAGGATATTGTTAG+AGG 0.378411 4_1:+74301468 Msa0571610:CDS
GTGGCAGTTGGCATTGCTGT+TGG 0.380126 4_1:+74301441 Msa0571610:CDS
TGAGGCTTCTTCGCGCGGAT+TGG 0.380295 4_1:+74301056 Msa0571610:CDS
AAGCCTCCCTGCACTCTTCT+CGG 0.384444 4_1:-74303458 None:intergenic
ATGGCTAAGATGCTTCATAA+TGG 0.390726 4_1:+74301015 Msa0571610:CDS
ATCTTCACCCTTGGGGTTGT+CGG 0.392594 4_1:-74301928 None:intergenic
GTGCGATGGCGGAGGGAGGG+CGG 0.392701 4_1:-74299961 None:intergenic
TCTACATCGTCGACTTCGTC+AGG 0.392959 4_1:-74300325 None:intergenic
GGGTCGTCGTCAGCTGGGTT+TGG 0.393648 4_1:-74300001 None:intergenic
AGTACACTTCTAGGAAATAT+AGG 0.394547 4_1:-74304195 None:intergenic
TGCTGTTGGGGCACCCTTGG+AGG 0.395991 4_1:+74301455 Msa0571610:CDS
CATGAAACATATCAAATAGA+AGG 0.403779 4_1:+74303411 Msa0571610:CDS
GAATTGGGTTTGATAGTTGT+AGG 0.404063 4_1:-74299860 None:intergenic
GTCAAAAGAAACGGGCCTTT+CGG 0.405006 4_1:+74303779 Msa0571610:three_prime_UTR
CGGAATCAATCTGGTGAAGA+TGG 0.407873 4_1:+74303833 Msa0571610:three_prime_UTR
ATCTAAATCAAAGGAAGATT+CGG 0.408810 4_1:-74300434 None:intergenic
AATGTCACAACAGGAACTTC+AGG 0.413089 4_1:-74301267 None:intergenic
GCGGAATCTTCGCCTACTTC+GGG 0.414843 4_1:-74300025 None:intergenic
AAATTCCCGTAAACCGAAAC+AGG 0.415050 4_1:-74300550 None:intergenic
AGGAAGTAAGGGATAAGATA+AGG 0.415514 4_1:-74299936 None:intergenic
AGCGGAATCTTCGCCTACTT+CGG 0.417036 4_1:-74300026 None:intergenic
GAAGGCGAGCGCGGTCGGCT+TGG 0.419138 4_1:-74300081 None:intergenic
ATTGTTAGCACAGCAACCTT+TGG 0.420664 4_1:-74303714 None:intergenic
ATTTGTGTACTCAGGTGAAC+AGG 0.423715 4_1:-74303749 None:intergenic
TCCGCCGAAGACGATTTATT+CGG 0.424928 4_1:+74300196 Msa0571610:CDS
CTTTGGTATCAGTGGCTCTC+TGG 0.425305 4_1:-74303697 None:intergenic
CAAAGAGAGTTCAAACTTCA+AGG 0.427492 4_1:-74301322 None:intergenic
CAACCTCGCAGGATTATAAC+TGG 0.428629 4_1:+74301621 Msa0571610:CDS
GAAATTTCGTCCGGTTTACT+AGG 0.429518 4_1:+74301387 Msa0571610:CDS
AGTCTGGTGGTGGTTGAATT+GGG 0.431946 4_1:-74299875 None:intergenic
AAATCCCTGCATGTGAAAGC+TGG 0.432388 4_1:-74304164 None:intergenic
TATATATTTGCCTAGGAAGC+AGG 0.435093 4_1:-74304040 None:intergenic
GGATGAGGAGGACGAGGAAG+AGG 0.435631 4_1:+74301134 Msa0571610:CDS
TCGATTGCTAGTTATGTTCA+TGG 0.437145 4_1:+74300934 Msa0571610:CDS
ACACGCTAGTCCTGCTTCCT+AGG 0.437326 4_1:+74304030 Msa0571610:three_prime_UTR
ATACATGGATCTTCACCCTT+GGG 0.437950 4_1:-74301936 None:intergenic
TGTTGCTATCTTTGTCATCA+GGG 0.440012 4_1:-74301877 None:intergenic
TGCATGGTGCAGGTGATTGC+TGG 0.441426 4_1:+74303381 Msa0571610:intron
GTGCGAGCTTCAGTTGCAAT+GGG 0.443311 4_1:+74302237 Msa0571610:CDS
AAGGTTCGTCGGGAGCGTCT+TGG 0.443705 4_1:-74300162 None:intergenic
GGAAGTAAGGGATAAGATAA+GGG 0.446717 4_1:-74299935 None:intergenic
ATTACAGTGGCATGTAAGCC+AGG 0.448898 4_1:-74303985 None:intergenic
TTATGTGAACTGAAGAAGAA+AGG 0.451052 4_1:-74299786 None:intergenic
AGCTTCAATTTCGGATTTGG+CGG 0.454097 4_1:-74300287 None:intergenic
CATGGCTCTTATTGGGATAA+CGG 0.454105 4_1:+74300831 Msa0571610:CDS
TACTCCCAGCTTTCACATGC+AGG 0.454876 4_1:+74304159 Msa0571610:three_prime_UTR
TTGTAAGGCTTTGGTTATTG+TGG 0.454945 4_1:+74300747 Msa0571610:CDS
CAGAATTCACAGTGAGTTCA+CGG 0.458201 4_1:-74300363 None:intergenic
TATGTGAACTGAAGAAGAAA+GGG 0.459740 4_1:-74299785 None:intergenic
AATTTGTTTGTGTGTTGTGT+TGG 0.460206 4_1:+74300625 Msa0571610:CDS
AGCGTCTTGGGAGTCGGCGA+TGG 0.463001 4_1:-74300149 None:intergenic
CCGTCGGGTGCGATGGCGGA+GGG 0.463995 4_1:-74299968 None:intergenic
ATTCTTGCTGCTGTGGCAGT+TGG 0.464613 4_1:+74301429 Msa0571610:CDS
TAAAAGTATGTATGAAGCGA+TGG 0.466444 4_1:+74300888 Msa0571610:CDS
ACAACTTTCCTATGCCGCTC+AGG 0.466784 4_1:-74301198 None:intergenic
CAGGAGCATCGGAATCAATC+TGG 0.467992 4_1:+74303824 Msa0571610:three_prime_UTR
GAATTGAAGAAGGAAGTGTT+TGG 0.469214 4_1:-74299903 None:intergenic
GAGCGCGGTCGGCTTGGAGT+TGG 0.470195 4_1:-74300075 None:intergenic
TCTTCGCGCGGATTGGCTCA+GGG 0.472077 4_1:+74301063 Msa0571610:CDS
CATAAAGTTATACATGGCAT+TGG 0.474995 4_1:-74304119 None:intergenic
GAAACGAACAAAGGCGCACT+TGG 0.476109 4_1:-74301234 None:intergenic
GGAGGGCGGAGAGGAAGTAA+GGG 0.477130 4_1:-74299947 None:intergenic
GGCAGTTGGCATTGCTGTTG+GGG 0.477281 4_1:+74301443 Msa0571610:CDS
ATGAAGTAGGTCAAAAGAAA+CGG 0.477936 4_1:+74303770 Msa0571610:exon
TCCGTCGGGTGCGATGGCGG+AGG 0.478458 4_1:-74299969 None:intergenic
TTGCTGTGGTGAGGACGAAA+GGG 0.479403 4_1:+74301845 Msa0571610:CDS
CGGGCCTTTCGGTTATGATA+GGG 0.479425 4_1:+74303790 Msa0571610:three_prime_UTR
CACATAATCTACAGTCTGAA+TGG 0.479971 4_1:+74299802 Msa0571610:exon
TGAGGTGAGGGGTTTGTATG+GGG 0.480467 4_1:-74299736 None:intergenic
CGATTGCTAGTTATGTTCAT+GGG 0.481862 4_1:+74300935 Msa0571610:CDS
TACTATCCTCCTCTTTCAAA+TGG 0.483577 4_1:+74302177 Msa0571610:CDS
GAAGTGTTTGGGTCTAAGTC+TGG 0.484204 4_1:-74299891 None:intergenic
GCCTTTCTTTGCAGGAGCAT+CGG 0.485689 4_1:+74303813 Msa0571610:three_prime_UTR
TCCAACGCAAATGTCACAAC+AGG 0.486132 4_1:-74301276 None:intergenic
TCCGATGCTCCTGCAAAGAA+AGG 0.486942 4_1:-74303814 None:intergenic
CGGGTGCGATGGCGGAGGGA+GGG 0.487167 4_1:-74299964 None:intergenic
TGAAGTAGGTCAAAAGAAAC+GGG 0.487177 4_1:+74303771 Msa0571610:exon
GACGGGAAGGGAATTGAAGA+AGG 0.487522 4_1:-74299913 None:intergenic
TCGGGTGCGATGGCGGAGGG+AGG 0.487907 4_1:-74299965 None:intergenic
TGAGTGAGTGAGTGAGGTGA+GGG 0.488611 4_1:-74299748 None:intergenic
TCGATGACCGAGAAGAGTGC+AGG 0.490095 4_1:+74303451 Msa0571610:CDS
GTCGGGAGCGTCTTGGGAGT+CGG 0.495128 4_1:-74300155 None:intergenic
TGGTGGATCCTGAGCGGCAT+AGG 0.495152 4_1:+74301190 Msa0571610:CDS
CTCCTCTTTCAAATGGTCAC+AGG 0.497529 4_1:+74302184 Msa0571610:CDS
CACTTCTAGGAAATATAGGC+TGG 0.498563 4_1:-74304191 None:intergenic
TTCACGAAGGCGAGCGCGGT+CGG 0.499086 4_1:-74300086 None:intergenic
AATTGAAGAAGGAAGTGTTT+GGG 0.501062 4_1:-74299902 None:intergenic
GTTGCTGTGGTGAGGACGAA+AGG 0.503031 4_1:+74301844 Msa0571610:CDS
TTGCAATTTATGTTGGACTC+TGG 0.504247 4_1:-74303883 None:intergenic
AAGCGATGGGTTTACGTACC+GGG 0.504543 4_1:+74300902 Msa0571610:CDS
TTTGTTTGAGACACAGGTGT+TGG 0.506074 4_1:+74301341 Msa0571610:CDS
AGTAATCTAGACAAGGCATC+AGG 0.506209 4_1:-74301579 None:intergenic
CCCTCTAACAATATCCTCCA+AGG 0.511090 4_1:-74301469 None:intergenic
ATTTCTCATAAAGTTATACA+TGG 0.511601 4_1:-74304125 None:intergenic
CCTACTTCATTTGTGTACTC+AGG 0.512817 4_1:-74303757 None:intergenic
TTTCGTCCGGTTTACTAGGA+AGG 0.513445 4_1:+74301391 Msa0571610:CDS
ATCAGTGGCGGAAGGTTCGT+CGG 0.513622 4_1:-74300173 None:intergenic
CATACATGGATCTTCACCCT+TGG 0.516195 4_1:-74301937 None:intergenic
TGTTCATGGGGATAATCAGT+TGG 0.516920 4_1:+74300948 Msa0571610:CDS
ATTGTGCCTTCCTAGTAAAC+CGG 0.517946 4_1:-74301397 None:intergenic
TTCGCCGAATAAATCGTCTT+CGG 0.522535 4_1:-74300200 None:intergenic
GTCTTGGGAGTCGGCGATGG+CGG 0.523882 4_1:-74300146 None:intergenic
GTGTTGGTTAATACACCTGC+TGG 0.525818 4_1:+74301357 Msa0571610:CDS
TGTGCGAGCTTCAGTTGCAA+TGG 0.526133 4_1:+74302236 Msa0571610:CDS
TCAGTGGCGGAAGGTTCGTC+GGG 0.527370 4_1:-74300172 None:intergenic
GGGATACTGGAAATTTCGTC+CGG 0.527829 4_1:+74301378 Msa0571610:CDS
ACTCTCTTTGTTTGAGACAC+AGG 0.527870 4_1:+74301335 Msa0571610:CDS
GTTGACGAGCTTCATCAAGC+TGG 0.530037 4_1:+74303489 Msa0571610:CDS
GAATCTTCGCCTACTTCGGG+TGG 0.530608 4_1:-74300022 None:intergenic
GGATAAGATAAGGGACGGGA+AGG 0.531341 4_1:-74299926 None:intergenic
ATGGAAGTTGCAATTTATGT+TGG 0.531347 4_1:-74303890 None:intergenic
AAGTGTGGAAGAGTAACAAA+TGG 0.536759 4_1:-74299830 None:intergenic
ATGTCACAACAGGAACTTCA+GGG 0.545053 4_1:-74301266 None:intergenic
GGCGATGGCGGCGAGATAAG+TGG 0.545762 4_1:-74300134 None:intergenic
ATATGTTGGCTGGGGTAGGA+TGG 0.546203 4_1:+74302118 Msa0571610:CDS
AAGAGGTTGATGCAGTTCCT+GGG 0.546388 4_1:+74301496 Msa0571610:CDS
AATCCCTGCATGTGAAAGCT+GGG 0.547200 4_1:-74304163 None:intergenic
GCTTCAATTTCGGATTTGGC+GGG 0.551169 4_1:-74300286 None:intergenic
GGGTCATAGTGGACTATGCT+CGG 0.551938 4_1:+74301553 Msa0571610:CDS
CTTCGCGCGGATTGGCTCAG+GGG 0.552284 4_1:+74301064 Msa0571610:CDS
CGGGTGGGTCGTCGTCAGCT+GGG 0.552775 4_1:-74300006 None:intergenic
AAAAGTATGTATGAAGCGAT+GGG 0.554179 4_1:+74300889 Msa0571610:CDS
TACGAATTTGATGGATGAGG+AGG 0.554797 4_1:+74301122 Msa0571610:CDS
GAAGCGATGGGTTTACGTAC+CGG 0.555215 4_1:+74300901 Msa0571610:CDS
TCCTGTTGTGACATTTGCGT+TGG 0.555371 4_1:+74301275 Msa0571610:CDS
GGAATCAATCTGGTGAAGAT+GGG 0.556201 4_1:+74303834 Msa0571610:three_prime_UTR
CCTTGGAGGATATTGTTAGA+GGG 0.557443 4_1:+74301469 Msa0571610:CDS
ACTATCAAAATCTAAATCAA+AGG 0.561397 4_1:-74300443 None:intergenic
TAAGAGAGCTTCAACCTCGC+AGG 0.561657 4_1:+74301610 Msa0571610:CDS
TCAATTAACTCACACCTCCC+AGG 0.561944 4_1:-74301513 None:intergenic
CAGCTACCCTCCTAATGTCA+TGG 0.562556 4_1:-74302215 None:intergenic
ATCGTCTTCGGCGGAATCAG+TGG 0.564284 4_1:-74300188 None:intergenic
ACAAGCATTTGGGGTCATAG+TGG 0.564472 4_1:+74301542 Msa0571610:CDS
TCAGTTGGATTCGTCTTATG+GGG 0.564527 4_1:+74300963 Msa0571610:CDS
ATGGCGGAGGGAGGGCGGAG+AGG 0.565355 4_1:-74299956 None:intergenic
GTGAATTCTGATGAATCTCA+AGG 0.565712 4_1:+74300376 Msa0571610:CDS
TTTGAAGTGATTGGTTGCTG+TGG 0.568006 4_1:+74301831 Msa0571610:intron
GGGCCTTTCGGTTATGATAG+GGG 0.568070 4_1:+74303791 Msa0571610:three_prime_UTR
AAATGCTGTTCTTGCTACGT+TGG 0.568754 4_1:+74300777 Msa0571610:CDS
GTTGTAGGAGAAATGAAGTG+TGG 0.569223 4_1:-74299845 None:intergenic
TTTGGGTCTAAGTCTGGTGG+TGG 0.569522 4_1:-74299885 None:intergenic
CGTAAAGAGTTCGTTAAGCA+AGG 0.569603 4_1:+74300247 Msa0571610:CDS
GTGCAGGTGATTGCTGGTAA+AGG 0.573284 4_1:+74303387 Msa0571610:intron
CTTCTTCACGAAGGCGAGCG+CGG 0.574199 4_1:-74300090 None:intergenic
CTGAACTTGTCCAATCAAGC+AGG 0.575216 4_1:+74304087 Msa0571610:three_prime_UTR
GTTGCTATCTTTGTCATCAG+GGG 0.577328 4_1:-74301876 None:intergenic
TTACAACATTCTTGCTGCTG+TGG 0.577487 4_1:+74301422 Msa0571610:CDS
GGAAGAGGATAGAGATGCGA+AGG 0.577527 4_1:+74301149 Msa0571610:CDS
CCCTCCGCCATCGCACCCGA+CGG 0.579629 4_1:+74299968 Msa0571610:CDS
GATAAGATAAGGGACGGGAA+GGG 0.580788 4_1:-74299925 None:intergenic
CCTGAGTACACAAATGAAGT+AGG 0.583539 4_1:+74303757 Msa0571610:CDS
TATTGTTAGAGGGATTGAAG+AGG 0.584456 4_1:+74301479 Msa0571610:CDS
CGATGACCGAGAAGAGTGCA+GGG 0.586317 4_1:+74303452 Msa0571610:CDS
AAAGAGAGTTCAAACTTCAA+GGG 0.587138 4_1:-74301321 None:intergenic
TAAGGGATAAGATAAGGGAC+GGG 0.588473 4_1:-74299930 None:intergenic
AATCTTCGCCTACTTCGGGT+GGG 0.589280 4_1:-74300021 None:intergenic
GACGATATGTTGGCTGGGGT+AGG 0.590280 4_1:+74302114 Msa0571610:CDS
TTTGATGGATGAGGAGGACG+AGG 0.591487 4_1:+74301128 Msa0571610:CDS
AGCCTGTGACCATTTGAAAG+AGG 0.592989 4_1:-74302186 None:intergenic
GGGGTTGTCGGATGTCAGCA+TGG 0.593109 4_1:-74301916 None:intergenic
GTAGGCGAAGATTCCGCTCA+CGG 0.594034 4_1:+74300031 Msa0571610:CDS
CGCCTTTGTTCGTTTCAATG+GGG 0.598646 4_1:+74301241 Msa0571610:CDS
TTACAGTGGCATGTAAGCCA+GGG 0.599521 4_1:-74303984 None:intergenic
GAGTGAGTGAGTGAGGTGAG+GGG 0.599607 4_1:-74299747 None:intergenic
GTGTTTGGGTCTAAGTCTGG+TGG 0.599929 4_1:-74299888 None:intergenic
GCGAGCTTCAGTTGCAATGG+GGG 0.600223 4_1:+74302239 Msa0571610:CDS
TTGAGTGAGGCTGATAAGAG+AGG 0.600487 4_1:+74300673 Msa0571610:CDS
GAAATTTCCAGTATCCCAGC+AGG 0.601448 4_1:-74301372 None:intergenic
TGAAATCTTCTTCTTCACGA+AGG 0.601474 4_1:-74300099 None:intergenic
TACATGGATCTTCACCCTTG+GGG 0.602061 4_1:-74301935 None:intergenic
TGACGAGGAACAAGCATTTG+GGG 0.607098 4_1:+74301533 Msa0571610:CDS
CTCCCCATTGAAACGAACAA+AGG 0.607522 4_1:-74301243 None:intergenic
TTGGATAAAAGCGTACTGCA+TGG 0.607669 4_1:-74303909 None:intergenic
ACTCCCAGCTTTCACATGCA+GGG 0.608356 4_1:+74304160 Msa0571610:three_prime_UTR
GACGACGACCCACCCGAAGT+AGG 0.608809 4_1:+74300013 Msa0571610:CDS
GTAAGGGATAAGATAAGGGA+CGG 0.611786 4_1:-74299931 None:intergenic
TTTGGACGATATGTTGGCTG+GGG 0.620608 4_1:+74302110 Msa0571610:CDS
AGCAATCGAGTTAAACATCC+CGG 0.622878 4_1:-74300920 None:intergenic
ACAGCAACCTTTGGTATCAG+TGG 0.623285 4_1:-74303705 None:intergenic
CTGTGACCATTTGAAAGAGG+AGG 0.627307 4_1:-74302183 None:intergenic
TCGGCGGAATCAGTGGCGGA+AGG 0.627428 4_1:-74300181 None:intergenic
AGTGATTGGTTGCTGTGGTG+AGG 0.627564 4_1:+74301836 Msa0571610:intron
CCTCTAACAATATCCTCCAA+GGG 0.631799 4_1:-74301468 None:intergenic
TGCGAGCTTCAGTTGCAATG+GGG 0.637029 4_1:+74302238 Msa0571610:CDS
GCTGTGGTGAGGACGAAAGG+GGG 0.640166 4_1:+74301847 Msa0571610:CDS
TCATAATGGAACTGAATCTG+TGG 0.641742 4_1:+74301029 Msa0571610:CDS
GCCGAATAAATCGTCTTCGG+CGG 0.645356 4_1:-74300197 None:intergenic
GATTGCTAGTTATGTTCATG+GGG 0.647011 4_1:+74300936 Msa0571610:CDS
TGTTGGTTAATACACCTGCT+GGG 0.653292 4_1:+74301358 Msa0571610:CDS
GTATTTGGTGAAGCCGTGAG+CGG 0.654753 4_1:-74300044 None:intergenic
TACAGTGGCATGTAAGCCAG+GGG 0.659302 4_1:-74303983 None:intergenic
GTCTTCGGCGGAATCAGTGG+CGG 0.659797 4_1:-74300185 None:intergenic
TGCTGTGGTGAGGACGAAAG+GGG 0.660888 4_1:+74301846 Msa0571610:CDS
GGCTCAGGGGAAATATGATG+AGG 0.665665 4_1:+74301077 Msa0571610:CDS
CAAGGATGGTGGATCCTGAG+CGG 0.668101 4_1:+74301184 Msa0571610:CDS
GCTGACATCCGACAACCCCA+AGG 0.672170 4_1:+74301920 Msa0571610:CDS
CAGAGAGCCACTGATACCAA+AGG 0.673622 4_1:+74303698 Msa0571610:CDS
AGGCCCCTATCATAACCGAA+AGG 0.683015 4_1:-74303794 None:intergenic
ACACAGAATTACAATTACAG+TGG 0.694053 4_1:-74303998 None:intergenic
CTGACATCCGACAACCCCAA+GGG 0.697527 4_1:+74301921 Msa0571610:CDS
AGAATCAAGTAATCTAGACA+AGG 0.699983 4_1:-74301586 None:intergenic
AGGTTGATGCAGTTCCTGGG+AGG 0.713356 4_1:+74301499 Msa0571610:CDS
TGGCTCTTATTGGGATAACG+GGG 0.726754 4_1:+74300833 Msa0571610:CDS
ATACCAGTTATAATCCTGCG+AGG 0.748233 4_1:-74301624 None:intergenic
TGACCGAGAAGAGTGCAGGG+AGG 0.749733 4_1:+74303455 Msa0571610:CDS
GAGGTGTGAGTTAATTGACG+AGG 0.756211 4_1:+74301518 Msa0571610:CDS
ACAGTGGCATGTAAGCCAGG+GGG 0.763423 4_1:-74303982 None:intergenic
TGTGTTGGAAGAGAAAACGA+TGG 0.775149 4_1:+74300640 Msa0571610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAGATTTTGATAGTTTA+GGG + chr4_1:74300449-74300468 Msa0571610:CDS 15.0%
!! TGAAATTCTGAATATTTATA+GGG - chr4_1:74302439-74302458 None:intergenic 15.0%
!! ATGAAATTCTGAATATTTAT+AGG - chr4_1:74302440-74302459 None:intergenic 15.0%
!!! AAAGTGTAATTTTATTTTGT+AGG + chr4_1:74302569-74302588 Msa0571610:intron 15.0%
!!! AAGTGTAATTTTATTTTGTA+GGG + chr4_1:74302570-74302589 Msa0571610:intron 15.0%
!! AACAAATTCTGAATATTTAT+AGG + chr4_1:74302599-74302618 Msa0571610:intron 15.0%
!! ACAAATTCTGAATATTTATA+GGG + chr4_1:74302600-74302619 Msa0571610:intron 15.0%
!!! AACTCATCTTTTTTTTTTTT+GGG + chr4_1:74303218-74303237 Msa0571610:intron 15.0%
!!! ATATTTTTATATATTTGCCT+AGG - chr4_1:74304050-74304069 None:intergenic 15.0%
!! ACTATCAAAATCTAAATCAA+AGG - chr4_1:74300446-74300465 None:intergenic 20.0%
!!! GATTTAGATTTTGATAGTTT+AGG + chr4_1:74300448-74300467 Msa0571610:CDS 20.0%
!! AATTTGGAAGTTGAAATTAA+TGG + chr4_1:74300568-74300587 Msa0571610:CDS 20.0%
!! ATTGATATTGAAGATACTTT+AGG + chr4_1:74300724-74300743 Msa0571610:CDS 20.0%
!!! TTTTTGGGTTACTAATTATA+AGG + chr4_1:74301712-74301731 Msa0571610:intron 20.0%
!! GCATAATTAATTATATCGTT+TGG + chr4_1:74301759-74301778 Msa0571610:intron 20.0%
!!! GTAAAAAGTATGAAAGAATT+AGG - chr4_1:74302072-74302091 None:intergenic 20.0%
!!! ACTTTTTACTTTTTATTCAG+TGG + chr4_1:74302083-74302102 Msa0571610:intron 20.0%
!!! TTTTTATTCAGTGGATATTT+TGG + chr4_1:74302092-74302111 Msa0571610:intron 20.0%
!!! TTGCTTAATTTAAACCATTT+TGG + chr4_1:74302355-74302374 Msa0571610:intron 20.0%
!! GGGTTAATTAAGTAAATAAA+TGG + chr4_1:74302412-74302431 Msa0571610:intron 20.0%
!!! TTTTACGTCAACATTTTTTT+TGG + chr4_1:74302509-74302528 Msa0571610:intron 20.0%
!!! TATTTTCCTTTAGCATTTTA+GGG - chr4_1:74302536-74302555 None:intergenic 20.0%
!!! ATATTTTCCTTTAGCATTTT+AGG - chr4_1:74302537-74302556 None:intergenic 20.0%
!! AACAAACATAGAATAACTAT+TGG + chr4_1:74302889-74302908 Msa0571610:intron 20.0%
!! ATTAAATCTTACTTAGTGAA+TGG + chr4_1:74303124-74303143 Msa0571610:intron 20.0%
!! CAAAAAAAAAAAAGATGAGT+TGG - chr4_1:74303219-74303238 None:intergenic 20.0%
!!! CAACTCATCTTTTTTTTTTT+TGG + chr4_1:74303217-74303236 Msa0571610:intron 20.0%
!! AATTATTCCGAAATGATTAA+GGG - chr4_1:74303286-74303305 None:intergenic 20.0%
!!! CTTCTTGCATATTAATATTT+TGG - chr4_1:74303311-74303330 None:intergenic 20.0%
!! CAAAATATTAATATGCAAGA+AGG + chr4_1:74303309-74303328 Msa0571610:intron 20.0%
!!! AAGAAGGAATTGTTTATTTT+TGG + chr4_1:74303325-74303344 Msa0571610:intron 20.0%
!! TATAGACAAAAATAAAAGGT+TGG - chr4_1:74303931-74303950 None:intergenic 20.0%
!! GCTATATAGACAAAAATAAA+AGG - chr4_1:74303935-74303954 None:intergenic 20.0%
!! ATTTCTCATAAAGTTATACA+TGG - chr4_1:74304128-74304147 None:intergenic 20.0%
! ATCTAAATCAAAGGAAGATT+CGG - chr4_1:74300437-74300456 None:intergenic 25.0%
! TGTATTTCTCTTAATTGATG+TGG + chr4_1:74301650-74301669 Msa0571610:intron 25.0%
! AGTTCAAAACAAAATTGAGA+AGG - chr4_1:74301683-74301702 None:intergenic 25.0%
!!! TCTCAATTTTGTTTTGAACT+TGG + chr4_1:74301683-74301702 Msa0571610:intron 25.0%
!!! TTGAACTTGGAGAAATTTTT+TGG + chr4_1:74301696-74301715 Msa0571610:intron 25.0%
!!! TGAACTTGGAGAAATTTTTT+GGG + chr4_1:74301697-74301716 Msa0571610:intron 25.0%
! CTTCAAAAGAAGAAAAAAGA+CGG - chr4_1:74301818-74301837 None:intergenic 25.0%
!!! TTTTCTTCTTTTGAAGTGAT+TGG + chr4_1:74301822-74301841 Msa0571610:intron 25.0%
! GTTAAGACATTGTGAAATTT+GGG - chr4_1:74302032-74302051 None:intergenic 25.0%
! AGTTAAGACATTGTGAAATT+TGG - chr4_1:74302033-74302052 None:intergenic 25.0%
!!! ATTTAAACCATTTTGGTTCT+TGG + chr4_1:74302362-74302381 Msa0571610:intron 25.0%
!! GTTGACGTAAAATTTTTACA+GGG - chr4_1:74302501-74302520 None:intergenic 25.0%
!! TGTTGACGTAAAATTTTTAC+AGG - chr4_1:74302502-74302521 None:intergenic 25.0%
! TCAAGGGTTAATTAAGTAAA+TGG - chr4_1:74302627-74302646 None:intergenic 25.0%
! CACATCTTAATATTGTTCAA+GGG - chr4_1:74302643-74302662 None:intergenic 25.0%
! ACACATCTTAATATTGTTCA+AGG - chr4_1:74302644-74302663 None:intergenic 25.0%
! TCAAAGTGATATTTCAACTA+AGG + chr4_1:74302665-74302684 Msa0571610:intron 25.0%
!!! TGTTGTTGCAACTTATTTTA+GGG - chr4_1:74302696-74302715 None:intergenic 25.0%
!!! TTGTTGTTGCAACTTATTTT+AGG - chr4_1:74302697-74302716 None:intergenic 25.0%
! TGGTTTATGATAGAACATTA+TGG - chr4_1:74302777-74302796 None:intergenic 25.0%
!! TTCCATTGCTACTTAATTTA+GGG - chr4_1:74302808-74302827 None:intergenic 25.0%
!! TTTCCATTGCTACTTAATTT+AGG - chr4_1:74302809-74302828 None:intergenic 25.0%
! GTTTGACGCATTTAAATTTA+AGG - chr4_1:74302872-74302891 None:intergenic 25.0%
! ATACGAATAATAATTGTGGA+TGG - chr4_1:74302915-74302934 None:intergenic 25.0%
! GTGAATACGAATAATAATTG+TGG - chr4_1:74302919-74302938 None:intergenic 25.0%
! AATTATTATTCGTATTCACG+TGG + chr4_1:74302920-74302939 Msa0571610:intron 25.0%
! ATTAGGATTCCAACATTTAA+GGG - chr4_1:74303041-74303060 None:intergenic 25.0%
! TCACTAAGTAAGATTTAATG+AGG - chr4_1:74303123-74303142 None:intergenic 25.0%
!!! TTTTTTTTTGGGTATGAACT+TGG + chr4_1:74303229-74303248 Msa0571610:intron 25.0%
! ATTATTCCGAAATGATTAAG+GGG - chr4_1:74303285-74303304 None:intergenic 25.0%
! GAATTATTCCGAAATGATTA+AGG - chr4_1:74303287-74303306 None:intergenic 25.0%
! CTTCTATTTGATATGTTTCA+TGG - chr4_1:74303413-74303432 None:intergenic 25.0%
! CATGAAACATATCAAATAGA+AGG + chr4_1:74303411-74303430 Msa0571610:CDS 25.0%
!!! TTTTGTTGTCTTTTTATGAC+TGG + chr4_1:74303560-74303579 Msa0571610:intron 25.0%
! GGAAGGAAAAAAAATAGAAT+TGG - chr4_1:74303957-74303976 None:intergenic 25.0%
!! TACTTGAGAACAACATATTT+TGG + chr4_1:74304214-74304233 Msa0571610:three_prime_UTR 25.0%
TATGTGAACTGAAGAAGAAA+GGG - chr4_1:74299788-74299807 None:intergenic 30.0%
TTATGTGAACTGAAGAAGAA+AGG - chr4_1:74299789-74299808 None:intergenic 30.0%
!! AATTGAAGAAGGAAGTGTTT+GGG - chr4_1:74299905-74299924 None:intergenic 30.0%
GCTAAACTCATCTTAAACTT+AGG - chr4_1:74300502-74300521 None:intergenic 30.0%
ATGGAATTCAACATGATTCT+AGG + chr4_1:74300587-74300606 Msa0571610:CDS 30.0%
! AATTTGTTTGTGTGTTGTGT+TGG + chr4_1:74300625-74300644 Msa0571610:CDS 30.0%
!! TGAAGATACTTTAGGTTGTA+AGG + chr4_1:74300732-74300751 Msa0571610:CDS 30.0%
TAAGTATCCTTCGAAAAACA+TGG + chr4_1:74300813-74300832 Msa0571610:CDS 30.0%
! TAAAAGTATGTATGAAGCGA+TGG + chr4_1:74300888-74300907 Msa0571610:CDS 30.0%
! AAAAGTATGTATGAAGCGAT+GGG + chr4_1:74300889-74300908 Msa0571610:CDS 30.0%
!!! TGTTTTGGTTCAGAATTTGA+TGG + chr4_1:74300996-74301015 Msa0571610:CDS 30.0%
!!! TGCTGTTTTTACGAATTTGA+TGG + chr4_1:74301113-74301132 Msa0571610:CDS 30.0%
!! TTTTACGAATTTGATGGATG+AGG + chr4_1:74301119-74301138 Msa0571610:CDS 30.0%
AAAGAGAGTTCAAACTTCAA+GGG - chr4_1:74301324-74301343 None:intergenic 30.0%
AGAATCAAGTAATCTAGACA+AGG - chr4_1:74301589-74301608 None:intergenic 30.0%
TTTCTCTTAATTGATGTGGA+AGG + chr4_1:74301654-74301673 Msa0571610:intron 30.0%
AAAAGAAGAAAAAAGACGGT+CGG - chr4_1:74301814-74301833 None:intergenic 30.0%
CCAATGTCAAAATACATACA+TGG - chr4_1:74301954-74301973 None:intergenic 30.0%
!!! CCATGTATGTATTTTGACAT+TGG + chr4_1:74301951-74301970 Msa0571610:intron 30.0%
TTCGTATATTGCTCTTAACA+AGG - chr4_1:74301991-74302010 None:intergenic 30.0%
!! ATGCAAGAGTATCTGAAATA+TGG + chr4_1:74302144-74302163 Msa0571610:CDS 30.0%
AGAAATACCAAGAACCAAAA+TGG - chr4_1:74302372-74302391 None:intergenic 30.0%
ATGCTAAAGGAAAATATCAC+AGG + chr4_1:74302540-74302559 Msa0571610:intron 30.0%
TGCTAAAGGAAAATATCACA+GGG + chr4_1:74302541-74302560 Msa0571610:intron 30.0%
CTTAATTTAGGGAAATGTGA+TGG - chr4_1:74302797-74302816 None:intergenic 30.0%
TTCCCTAAATTAAGTAGCAA+TGG + chr4_1:74302803-74302822 Msa0571610:intron 30.0%
TTCAAAGCTGTTGACAAATT+TGG + chr4_1:74302841-74302860 Msa0571610:intron 30.0%
TTAGGATTCCAACATTTAAG+GGG - chr4_1:74303040-74303059 None:intergenic 30.0%
GATTAGGATTCCAACATTTA+AGG - chr4_1:74303042-74303061 None:intergenic 30.0%
!! AGGATTAGTTAAAGCTTCAT+AGG - chr4_1:74303089-74303108 None:intergenic 30.0%
TTAATGAGGAAAAAATCGAC+AGG - chr4_1:74303109-74303128 None:intergenic 30.0%
ACTAATCCCCTTAATCATTT+CGG + chr4_1:74303276-74303295 Msa0571610:intron 30.0%
! TGGAATGTGATTTGTCAATA+AGG + chr4_1:74303345-74303364 Msa0571610:intron 30.0%
! GGAATGTGATTTGTCAATAA+GGG + chr4_1:74303346-74303365 Msa0571610:intron 30.0%
TCAAATAGAAGGTGAGAAAA+AGG + chr4_1:74303422-74303441 Msa0571610:CDS 30.0%
TAGATACAAGTGAATTTCCA+TGG + chr4_1:74303514-74303533 Msa0571610:intron 30.0%
ATGAAGTAGGTCAAAAGAAA+CGG + chr4_1:74303770-74303789 Msa0571610:exon 30.0%
ATGGAAGTTGCAATTTATGT+TGG - chr4_1:74303893-74303912 None:intergenic 30.0%
ACACAGAATTACAATTACAG+TGG - chr4_1:74304001-74304020 None:intergenic 30.0%
CATAAAGTTATACATGGCAT+TGG - chr4_1:74304122-74304141 None:intergenic 30.0%
! AGTACACTTCTAGGAAATAT+AGG - chr4_1:74304198-74304217 None:intergenic 30.0%
CACATAATCTACAGTCTGAA+TGG + chr4_1:74299802-74299821 Msa0571610:exon 35.0%
AAGTGTGGAAGAGTAACAAA+TGG - chr4_1:74299833-74299852 None:intergenic 35.0%
! GAATTGGGTTTGATAGTTGT+AGG - chr4_1:74299863-74299882 None:intergenic 35.0%
!! GAATTGAAGAAGGAAGTGTT+TGG - chr4_1:74299906-74299925 None:intergenic 35.0%
GGAAGTAAGGGATAAGATAA+GGG - chr4_1:74299938-74299957 None:intergenic 35.0%
AGGAAGTAAGGGATAAGATA+AGG - chr4_1:74299939-74299958 None:intergenic 35.0%
! TTTGGATAGAATTTTCCGTC+GGG - chr4_1:74299986-74300005 None:intergenic 35.0%
! GTTTGGATAGAATTTTCCGT+CGG - chr4_1:74299987-74300006 None:intergenic 35.0%
!! GAGTTGGATTTGTTGGTATT+TGG - chr4_1:74300062-74300081 None:intergenic 35.0%
TGAAATCTTCTTCTTCACGA+AGG - chr4_1:74300102-74300121 None:intergenic 35.0%
AACAGCTTCAATTTCGGATT+TGG - chr4_1:74300293-74300312 None:intergenic 35.0%
CTCTTCAACAGCTTCAATTT+CGG - chr4_1:74300299-74300318 None:intergenic 35.0%
GTGAATTCTGATGAATCTCA+AGG + chr4_1:74300376-74300395 Msa0571610:CDS 35.0%
!! CAAGGAGATTTTGAAGAAGA+TGG + chr4_1:74300394-74300413 Msa0571610:CDS 35.0%
!! TACTTTAGGTTGTAAGGCTT+TGG + chr4_1:74300738-74300757 Msa0571610:CDS 35.0%
! TTGTAAGGCTTTGGTTATTG+TGG + chr4_1:74300747-74300766 Msa0571610:CDS 35.0%
!! ATAAGAGCCATGTTTTTCGA+AGG - chr4_1:74300823-74300842 None:intergenic 35.0%
TCGAAAAACATGGCTCTTAT+TGG + chr4_1:74300823-74300842 Msa0571610:CDS 35.0%
CGAAAAACATGGCTCTTATT+GGG + chr4_1:74300824-74300843 Msa0571610:CDS 35.0%
TCGATTGCTAGTTATGTTCA+TGG + chr4_1:74300934-74300953 Msa0571610:CDS 35.0%
CGATTGCTAGTTATGTTCAT+GGG + chr4_1:74300935-74300954 Msa0571610:CDS 35.0%
GATTGCTAGTTATGTTCATG+GGG + chr4_1:74300936-74300955 Msa0571610:CDS 35.0%
AATCAGTTGGATTCGTCTTA+TGG + chr4_1:74300961-74300980 Msa0571610:CDS 35.0%
ATCAGTTGGATTCGTCTTAT+GGG + chr4_1:74300962-74300981 Msa0571610:CDS 35.0%
ATGGCTAAGATGCTTCATAA+TGG + chr4_1:74301015-74301034 Msa0571610:CDS 35.0%
! TCATAATGGAACTGAATCTG+TGG + chr4_1:74301029-74301048 Msa0571610:CDS 35.0%
! AACTGAATCTGTGGTTTTTG+AGG + chr4_1:74301038-74301057 Msa0571610:CDS 35.0%
CAAAGAGAGTTCAAACTTCA+AGG - chr4_1:74301325-74301344 None:intergenic 35.0%
TATTGTTAGAGGGATTGAAG+AGG + chr4_1:74301479-74301498 Msa0571610:CDS 35.0%
TGTTGCTATCTTTGTCATCA+GGG - chr4_1:74301880-74301899 None:intergenic 35.0%
TTCACAATGTCTTAACTAGC+AGG + chr4_1:74302036-74302055 Msa0571610:intron 35.0%
TCACAATGTCTTAACTAGCA+GGG + chr4_1:74302037-74302056 Msa0571610:intron 35.0%
!! GGATATTTTGGACGATATGT+TGG + chr4_1:74302104-74302123 Msa0571610:CDS 35.0%
TACTATCCTCCTCTTTCAAA+TGG + chr4_1:74302177-74302196 Msa0571610:CDS 35.0%
! TTTTTCTCCATGACATTAGG+AGG + chr4_1:74302208-74302227 Msa0571610:CDS 35.0%
! TTTTCTCCATGACATTAGGA+GGG + chr4_1:74302209-74302228 Msa0571610:CDS 35.0%
! TTGGTTCTTGGTATTTCTTG+TGG + chr4_1:74302374-74302393 Msa0571610:intron 35.0%
TTGTGGAAAAGCTGAACAAT+AGG + chr4_1:74302391-74302410 Msa0571610:intron 35.0%
TGTGGAAAAGCTGAACAATA+GGG + chr4_1:74302392-74302411 Msa0571610:intron 35.0%
! TGCTGACGAAAATTTTCACA+GGG - chr4_1:74302470-74302489 None:intergenic 35.0%
! ATGCTGACGAAAATTTTCAC+AGG - chr4_1:74302471-74302490 None:intergenic 35.0%
TTTGGTCCCTAAAATGCTAA+AGG + chr4_1:74302527-74302546 Msa0571610:intron 35.0%
!! TTTGTCAACAGCTTTGAATG+TGG - chr4_1:74302839-74302858 None:intergenic 35.0%
GATCTTATGAAGTCACAACT+TGG + chr4_1:74302987-74303006 Msa0571610:intron 35.0%
CTACTTAAACGAGACAGATT+AGG - chr4_1:74303058-74303077 None:intergenic 35.0%
TTAAAGCTTCATAGGAAGCA+AGG - chr4_1:74303081-74303100 None:intergenic 35.0%
ATACAAGTGAATTTCCATGG+CGG + chr4_1:74303517-74303536 Msa0571610:intron 35.0%
! TTGTCTTTTTATGACTGGCA+TGG + chr4_1:74303565-74303584 Msa0571610:intron 35.0%
TCTCTTGCATTTATTGTTGC+AGG + chr4_1:74303671-74303690 Msa0571610:intron 35.0%
TGAAGTAGGTCAAAAGAAAC+GGG + chr4_1:74303771-74303790 Msa0571610:exon 35.0%
TTGCAATTTATGTTGGACTC+TGG - chr4_1:74303886-74303905 None:intergenic 35.0%
TATATATTTGCCTAGGAAGC+AGG - chr4_1:74304043-74304062 None:intergenic 35.0%
TTGTTCTCAAGTACACTTCT+AGG - chr4_1:74304207-74304226 None:intergenic 35.0%
GTTGTAGGAGAAATGAAGTG+TGG - chr4_1:74299848-74299867 None:intergenic 40.0%
TAAGGGATAAGATAAGGGAC+GGG - chr4_1:74299933-74299952 None:intergenic 40.0%
GTAAGGGATAAGATAAGGGA+CGG - chr4_1:74299934-74299953 None:intergenic 40.0%
TTCGCCGAATAAATCGTCTT+CGG - chr4_1:74300203-74300222 None:intergenic 40.0%
CGTAAAGAGTTCGTTAAGCA+AGG + chr4_1:74300247-74300266 Msa0571610:CDS 40.0%
AGCTTCAATTTCGGATTTGG+CGG - chr4_1:74300290-74300309 None:intergenic 40.0%
CAGAATTCACAGTGAGTTCA+CGG - chr4_1:74300366-74300385 None:intergenic 40.0%
! GATGAGTTTAGCTGAGCTTT+TGG + chr4_1:74300510-74300529 Msa0571610:CDS 40.0%
! GCTTTTGGATGAGAGTAAAG+TGG + chr4_1:74300525-74300544 Msa0571610:CDS 40.0%
GAGTAAAGTGGTTCCTGTTT+CGG + chr4_1:74300537-74300556 Msa0571610:CDS 40.0%
AAATTCCCGTAAACCGAAAC+AGG - chr4_1:74300553-74300572 None:intergenic 40.0%
TGTTTCGGTTTACGGGAATT+TGG + chr4_1:74300552-74300571 Msa0571610:CDS 40.0%
!! GATTCTAGGCTTGTTACTTC+TGG + chr4_1:74300601-74300620 Msa0571610:CDS 40.0%
TGTGTTGGAAGAGAAAACGA+TGG + chr4_1:74300640-74300659 Msa0571610:CDS 40.0%
!!! TGGACATGTGTTTTTGAGTG+AGG + chr4_1:74300660-74300679 Msa0571610:CDS 40.0%
AAATGCTGTTCTTGCTACGT+TGG + chr4_1:74300777-74300796 Msa0571610:CDS 40.0%
CATGGCTCTTATTGGGATAA+CGG + chr4_1:74300831-74300850 Msa0571610:CDS 40.0%
ATGGCTCTTATTGGGATAAC+GGG + chr4_1:74300832-74300851 Msa0571610:CDS 40.0%
AGCAATCGAGTTAAACATCC+CGG - chr4_1:74300923-74300942 None:intergenic 40.0%
TGTTCATGGGGATAATCAGT+TGG + chr4_1:74300948-74300967 Msa0571610:CDS 40.0%
TCAGTTGGATTCGTCTTATG+GGG + chr4_1:74300963-74300982 Msa0571610:CDS 40.0%
! TACGAATTTGATGGATGAGG+AGG + chr4_1:74301122-74301141 Msa0571610:CDS 40.0%
!! TAAGCTGTTTTCAAGGATGG+TGG + chr4_1:74301173-74301192 Msa0571610:CDS 40.0%
ATGTCACAACAGGAACTTCA+GGG - chr4_1:74301269-74301288 None:intergenic 40.0%
AATGTCACAACAGGAACTTC+AGG - chr4_1:74301270-74301289 None:intergenic 40.0%
! ACTCTCTTTGTTTGAGACAC+AGG + chr4_1:74301335-74301354 Msa0571610:CDS 40.0%
! TTTGTTTGAGACACAGGTGT+TGG + chr4_1:74301341-74301360 Msa0571610:CDS 40.0%
! TGTTGGTTAATACACCTGCT+GGG + chr4_1:74301358-74301377 Msa0571610:CDS 40.0%
GAAATTTCGTCCGGTTTACT+AGG + chr4_1:74301387-74301406 Msa0571610:CDS 40.0%
ATTGTGCCTTCCTAGTAAAC+CGG - chr4_1:74301400-74301419 None:intergenic 40.0%
TTACAACATTCTTGCTGCTG+TGG + chr4_1:74301422-74301441 Msa0571610:CDS 40.0%
CCTCTAACAATATCCTCCAA+GGG - chr4_1:74301471-74301490 None:intergenic 40.0%
CCTTGGAGGATATTGTTAGA+GGG + chr4_1:74301469-74301488 Msa0571610:CDS 40.0%
ATTGACGAGGAACAAGCATT+TGG + chr4_1:74301531-74301550 Msa0571610:CDS 40.0%
TTGACGAGGAACAAGCATTT+GGG + chr4_1:74301532-74301551 Msa0571610:CDS 40.0%
! AGTAATCTAGACAAGGCATC+AGG - chr4_1:74301582-74301601 None:intergenic 40.0%
ATACCAGTTATAATCCTGCG+AGG - chr4_1:74301627-74301646 None:intergenic 40.0%
! TTTGAAGTGATTGGTTGCTG+TGG + chr4_1:74301831-74301850 Msa0571610:intron 40.0%
GTTGCTATCTTTGTCATCAG+GGG - chr4_1:74301879-74301898 None:intergenic 40.0%
CTGTTGCTATCTTTGTCATC+AGG - chr4_1:74301881-74301900 None:intergenic 40.0%
ATACATGGATCTTCACCCTT+GGG - chr4_1:74301939-74301958 None:intergenic 40.0%
! ATTTTGGACGATATGTTGGC+TGG + chr4_1:74302108-74302127 Msa0571610:CDS 40.0%
!! TTTTGGACGATATGTTGGCT+GGG + chr4_1:74302109-74302128 Msa0571610:CDS 40.0%
!! GGCTTTTTCTCCATGACATT+AGG + chr4_1:74302205-74302224 Msa0571610:CDS 40.0%
TCATGCATGAAACTGAACGT+TGG - chr4_1:74302958-74302977 None:intergenic 40.0%
! TCCAACATTTAAGGGGTACA+GGG - chr4_1:74303033-74303052 None:intergenic 40.0%
! TTCCAACATTTAAGGGGTAC+AGG - chr4_1:74303034-74303053 None:intergenic 40.0%
TTTGACTGTCAGTCTACACT+TGG + chr4_1:74303192-74303211 Msa0571610:intron 40.0%
! AGGGTACACTTTTATGTGCA+TGG + chr4_1:74303365-74303384 Msa0571610:intron 40.0%
AACATTTGACATTACCGCCA+TGG - chr4_1:74303534-74303553 None:intergenic 40.0%
ATTGTTAGCACAGCAACCTT+TGG - chr4_1:74303717-74303736 None:intergenic 40.0%
ATTTGTGTACTCAGGTGAAC+AGG - chr4_1:74303752-74303771 None:intergenic 40.0%
CCTACTTCATTTGTGTACTC+AGG - chr4_1:74303760-74303779 None:intergenic 40.0%
CCTGAGTACACAAATGAAGT+AGG + chr4_1:74303757-74303776 Msa0571610:CDS 40.0%
GGAATCAATCTGGTGAAGAT+GGG + chr4_1:74303834-74303853 Msa0571610:three_prime_UTR 40.0%
! TTGGATAAAAGCGTACTGCA+TGG - chr4_1:74303912-74303931 None:intergenic 40.0%
GATAATCTAGCCTGCTTGAT+TGG - chr4_1:74304100-74304119 None:intergenic 40.0%
! CACTTCTAGGAAATATAGGC+TGG - chr4_1:74304194-74304213 None:intergenic 40.0%
!! AGTCTGGTGGTGGTTGAATT+GGG - chr4_1:74299878-74299897 None:intergenic 45.0%
!! AAGTCTGGTGGTGGTTGAAT+TGG - chr4_1:74299879-74299898 None:intergenic 45.0%
! GAAGTGTTTGGGTCTAAGTC+TGG - chr4_1:74299894-74299913 None:intergenic 45.0%
GATAAGATAAGGGACGGGAA+GGG - chr4_1:74299928-74299947 None:intergenic 45.0%
TCCGCCGAAGACGATTTATT+CGG + chr4_1:74300196-74300215 Msa0571610:CDS 45.0%
ATTTCGGATTTGGCGGGATT+AGG - chr4_1:74300283-74300302 None:intergenic 45.0%
GCTTCAATTTCGGATTTGGC+GGG - chr4_1:74300289-74300308 None:intergenic 45.0%
GTGGTTCCTGTTTCGGTTTA+CGG + chr4_1:74300544-74300563 Msa0571610:CDS 45.0%
TGGTTCCTGTTTCGGTTTAC+GGG + chr4_1:74300545-74300564 Msa0571610:CDS 45.0%
TTGAGTGAGGCTGATAAGAG+AGG + chr4_1:74300673-74300692 Msa0571610:CDS 45.0%
TGGCTCTTATTGGGATAACG+GGG + chr4_1:74300833-74300852 Msa0571610:CDS 45.0%
!! ATTGGGATAACGGGGACTTA+TGG + chr4_1:74300841-74300860 Msa0571610:CDS 45.0%
!! CGAAGGCTAAGCTGTTTTCA+AGG + chr4_1:74301166-74301185 Msa0571610:CDS 45.0%
!! GGCTAAGCTGTTTTCAAGGA+TGG + chr4_1:74301170-74301189 Msa0571610:CDS 45.0%
TGCGCCTTTGTTCGTTTCAA+TGG + chr4_1:74301239-74301258 Msa0571610:CDS 45.0%
GCGCCTTTGTTCGTTTCAAT+GGG + chr4_1:74301240-74301259 Msa0571610:CDS 45.0%
CGCCTTTGTTCGTTTCAATG+GGG + chr4_1:74301241-74301260 Msa0571610:CDS 45.0%
CTCCCCATTGAAACGAACAA+AGG - chr4_1:74301246-74301265 None:intergenic 45.0%
TCCTGTTGTGACATTTGCGT+TGG + chr4_1:74301275-74301294 Msa0571610:CDS 45.0%
TCCAACGCAAATGTCACAAC+AGG - chr4_1:74301279-74301298 None:intergenic 45.0%
!! GTGTTGGTTAATACACCTGC+TGG + chr4_1:74301357-74301376 Msa0571610:CDS 45.0%
TAATACACCTGCTGGGATAC+TGG + chr4_1:74301365-74301384 Msa0571610:CDS 45.0%
GAAATTTCCAGTATCCCAGC+AGG - chr4_1:74301375-74301394 None:intergenic 45.0%
GGGATACTGGAAATTTCGTC+CGG + chr4_1:74301378-74301397 Msa0571610:CDS 45.0%
TTTCGTCCGGTTTACTAGGA+AGG + chr4_1:74301391-74301410 Msa0571610:CDS 45.0%
CCCTTGGAGGATATTGTTAG+AGG + chr4_1:74301468-74301487 Msa0571610:CDS 45.0%
CCCTCTAACAATATCCTCCA+AGG - chr4_1:74301472-74301491 None:intergenic 45.0%
!! AAGAGGTTGATGCAGTTCCT+GGG + chr4_1:74301496-74301515 Msa0571610:CDS 45.0%
TCAATTAACTCACACCTCCC+AGG - chr4_1:74301516-74301535 None:intergenic 45.0%
GAGGTGTGAGTTAATTGACG+AGG + chr4_1:74301518-74301537 Msa0571610:CDS 45.0%
TGACGAGGAACAAGCATTTG+GGG + chr4_1:74301533-74301552 Msa0571610:CDS 45.0%
! ACAAGCATTTGGGGTCATAG+TGG + chr4_1:74301542-74301561 Msa0571610:CDS 45.0%
CAACCTCGCAGGATTATAAC+TGG + chr4_1:74301621-74301640 Msa0571610:CDS 45.0%
TACATGGATCTTCACCCTTG+GGG - chr4_1:74301938-74301957 None:intergenic 45.0%
CATACATGGATCTTCACCCT+TGG - chr4_1:74301940-74301959 None:intergenic 45.0%
! TTTGGACGATATGTTGGCTG+GGG + chr4_1:74302110-74302129 Msa0571610:CDS 45.0%
CTGTGACCATTTGAAAGAGG+AGG - chr4_1:74302186-74302205 None:intergenic 45.0%
CTCCTCTTTCAAATGGTCAC+AGG + chr4_1:74302184-74302203 Msa0571610:CDS 45.0%
AGCCTGTGACCATTTGAAAG+AGG - chr4_1:74302189-74302208 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr4_1:74302727-74302746 Msa0571610:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr4_1:74302728-74302747 Msa0571610:intron 45.0%
TGCATGAAACTGAACGTTGG+TGG - chr4_1:74302955-74302974 None:intergenic 45.0%
ACAGGGAAGTCAGCTTATCA+TGG - chr4_1:74303016-74303035 None:intergenic 45.0%
TCCCTGTACCCCTTAAATGT+TGG + chr4_1:74303029-74303048 Msa0571610:intron 45.0%
! CACTTTTATGTGCATGGTGC+AGG + chr4_1:74303371-74303390 Msa0571610:intron 45.0%
ACAGCAACCTTTGGTATCAG+TGG - chr4_1:74303708-74303727 None:intergenic 45.0%
GTCAAAAGAAACGGGCCTTT+CGG + chr4_1:74303779-74303798 Msa0571610:three_prime_UTR 45.0%
CGGAATCAATCTGGTGAAGA+TGG + chr4_1:74303833-74303852 Msa0571610:three_prime_UTR 45.0%
! TTTTCCTTCCTTTTTCCCCC+TGG + chr4_1:74303967-74303986 Msa0571610:three_prime_UTR 45.0%
TTACAGTGGCATGTAAGCCA+GGG - chr4_1:74303987-74304006 None:intergenic 45.0%
ATTACAGTGGCATGTAAGCC+AGG - chr4_1:74303988-74304007 None:intergenic 45.0%
CTGAACTTGTCCAATCAAGC+AGG + chr4_1:74304087-74304106 Msa0571610:three_prime_UTR 45.0%
AATCCCTGCATGTGAAAGCT+GGG - chr4_1:74304166-74304185 None:intergenic 45.0%
AAATCCCTGCATGTGAAAGC+TGG - chr4_1:74304167-74304186 None:intergenic 45.0%
TGAGGTGAGGGGTTTGTATG+GGG - chr4_1:74299739-74299758 None:intergenic 50.0%
GTGAGGTGAGGGGTTTGTAT+GGG - chr4_1:74299740-74299759 None:intergenic 50.0%
AGTGAGGTGAGGGGTTTGTA+TGG - chr4_1:74299741-74299760 None:intergenic 50.0%
TGAGTGAGTGAGTGAGGTGA+GGG - chr4_1:74299751-74299770 None:intergenic 50.0%
AGTGAGTGAGTGAGTGAGTG+AGG - chr4_1:74299757-74299776 None:intergenic 50.0%
TTTGGGTCTAAGTCTGGTGG+TGG - chr4_1:74299888-74299907 None:intergenic 50.0%
GTGTTTGGGTCTAAGTCTGG+TGG - chr4_1:74299891-74299910 None:intergenic 50.0%
GACGGGAAGGGAATTGAAGA+AGG - chr4_1:74299916-74299935 None:intergenic 50.0%
GGATAAGATAAGGGACGGGA+AGG - chr4_1:74299929-74299948 None:intergenic 50.0%
AATCTTCGCCTACTTCGGGT+GGG - chr4_1:74300024-74300043 None:intergenic 50.0%
AGCGGAATCTTCGCCTACTT+CGG - chr4_1:74300029-74300048 None:intergenic 50.0%
! GTATTTGGTGAAGCCGTGAG+CGG - chr4_1:74300047-74300066 None:intergenic 50.0%
! CGGCTTGGAGTTGGATTTGT+TGG - chr4_1:74300069-74300088 None:intergenic 50.0%
GCCGAATAAATCGTCTTCGG+CGG - chr4_1:74300200-74300219 None:intergenic 50.0%
!! TCTACATCGTCGACTTCGTC+AGG - chr4_1:74300328-74300347 None:intergenic 50.0%
! GAAGCGATGGGTTTACGTAC+CGG + chr4_1:74300901-74300920 Msa0571610:CDS 50.0%
! AAGCGATGGGTTTACGTACC+GGG + chr4_1:74300902-74300921 Msa0571610:CDS 50.0%
GGATTCGTCTTATGGGGTTC+TGG + chr4_1:74300969-74300988 Msa0571610:CDS 50.0%
!!! TGGGGTTCTGGATGCTGTTT+TGG + chr4_1:74300981-74301000 Msa0571610:CDS 50.0%
!!! GTTTTTGAGGCTTCTTCGCG+CGG + chr4_1:74301051-74301070 Msa0571610:CDS 50.0%
GGCTCAGGGGAAATATGATG+AGG + chr4_1:74301077-74301096 Msa0571610:CDS 50.0%
! TTTGATGGATGAGGAGGACG+AGG + chr4_1:74301128-74301147 Msa0571610:CDS 50.0%
GGAAGAGGATAGAGATGCGA+AGG + chr4_1:74301149-74301168 Msa0571610:CDS 50.0%
ACAACTTTCCTATGCCGCTC+AGG - chr4_1:74301201-74301220 None:intergenic 50.0%
! GAAACGAACAAAGGCGCACT+TGG - chr4_1:74301237-74301256 None:intergenic 50.0%
ATTCTTGCTGCTGTGGCAGT+TGG + chr4_1:74301429-74301448 Msa0571610:CDS 50.0%
! TGGCAGTTGGCATTGCTGTT+GGG + chr4_1:74301442-74301461 Msa0571610:CDS 50.0%
!! GAAGAGGTTGATGCAGTTCC+TGG + chr4_1:74301495-74301514 Msa0571610:CDS 50.0%
!! GGGTCATAGTGGACTATGCT+CGG + chr4_1:74301553-74301572 Msa0571610:CDS 50.0%
TAAGAGAGCTTCAACCTCGC+AGG + chr4_1:74301610-74301629 Msa0571610:CDS 50.0%
! AGTGATTGGTTGCTGTGGTG+AGG + chr4_1:74301836-74301855 Msa0571610:intron 50.0%
TTGCTGTGGTGAGGACGAAA+GGG + chr4_1:74301845-74301864 Msa0571610:CDS 50.0%
ATCTTCACCCTTGGGGTTGT+CGG - chr4_1:74301931-74301950 None:intergenic 50.0%
! ATATGTTGGCTGGGGTAGGA+TGG + chr4_1:74302118-74302137 Msa0571610:CDS 50.0%
CAGCTACCCTCCTAATGTCA+TGG - chr4_1:74302218-74302237 None:intergenic 50.0%
TGTGCGAGCTTCAGTTGCAA+TGG + chr4_1:74302236-74302255 Msa0571610:CDS 50.0%
GTGCGAGCTTCAGTTGCAAT+GGG + chr4_1:74302237-74302256 Msa0571610:CDS 50.0%
TGCGAGCTTCAGTTGCAATG+GGG + chr4_1:74302238-74302257 Msa0571610:CDS 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr4_1:74302729-74302748 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr4_1:74302726-74302745 Msa0571610:intron 50.0%
TGACCCCACTTAGTGGGATA+AGG - chr4_1:74302734-74302753 None:intergenic 50.0%
TGAAGCTGACCCCACTTAGT+GGG - chr4_1:74302740-74302759 None:intergenic 50.0%
ATGAAGCTGACCCCACTTAG+TGG - chr4_1:74302741-74302760 None:intergenic 50.0%
ACTAAGTGGGGTCAGCTTCA+TGG + chr4_1:74302740-74302759 Msa0571610:intron 50.0%
GTGCAGGTGATTGCTGGTAA+AGG + chr4_1:74303387-74303406 Msa0571610:intron 50.0%
GTTGACGAGCTTCATCAAGC+TGG + chr4_1:74303489-74303508 Msa0571610:CDS 50.0%
CTTTGGTATCAGTGGCTCTC+TGG - chr4_1:74303700-74303719 None:intergenic 50.0%
CAGAGAGCCACTGATACCAA+AGG + chr4_1:74303698-74303717 Msa0571610:CDS 50.0%
ACGGGCCTTTCGGTTATGAT+AGG + chr4_1:74303789-74303808 Msa0571610:three_prime_UTR 50.0%
CGGGCCTTTCGGTTATGATA+GGG + chr4_1:74303790-74303809 Msa0571610:three_prime_UTR 50.0%
GGGCCTTTCGGTTATGATAG+GGG + chr4_1:74303791-74303810 Msa0571610:three_prime_UTR 50.0%
AGGCCCCTATCATAACCGAA+AGG - chr4_1:74303797-74303816 None:intergenic 50.0%
TGATAGGGGCCTTTCTTTGC+AGG + chr4_1:74303805-74303824 Msa0571610:three_prime_UTR 50.0%
! GCCTTTCTTTGCAGGAGCAT+CGG + chr4_1:74303813-74303832 Msa0571610:three_prime_UTR 50.0%
TCCGATGCTCCTGCAAAGAA+AGG - chr4_1:74303817-74303836 None:intergenic 50.0%
!! CAGGAGCATCGGAATCAATC+TGG + chr4_1:74303824-74303843 Msa0571610:three_prime_UTR 50.0%
TAAGCCAGGGGGAAAAAGGA+AGG - chr4_1:74303974-74303993 None:intergenic 50.0%
CATGTAAGCCAGGGGGAAAA+AGG - chr4_1:74303978-74303997 None:intergenic 50.0%
TACAGTGGCATGTAAGCCAG+GGG - chr4_1:74303986-74304005 None:intergenic 50.0%
TACTCCCAGCTTTCACATGC+AGG + chr4_1:74304159-74304178 Msa0571610:three_prime_UTR 50.0%
ACTCCCAGCTTTCACATGCA+GGG + chr4_1:74304160-74304179 Msa0571610:three_prime_UTR 50.0%
GAGTGAGTGAGTGAGGTGAG+GGG - chr4_1:74299750-74299769 None:intergenic 55.0%
GTGAGTGAGTGAGTGAGGTG+AGG - chr4_1:74299752-74299771 None:intergenic 55.0%
! GAATTTTCCGTCGGGTGCGA+TGG - chr4_1:74299978-74299997 None:intergenic 55.0%
GAATCTTCGCCTACTTCGGG+TGG - chr4_1:74300025-74300044 None:intergenic 55.0%
GCGGAATCTTCGCCTACTTC+GGG - chr4_1:74300028-74300047 None:intergenic 55.0%
GTAGGCGAAGATTCCGCTCA+CGG + chr4_1:74300031-74300050 Msa0571610:CDS 55.0%
! ATCAGTGGCGGAAGGTTCGT+CGG - chr4_1:74300176-74300195 None:intergenic 55.0%
ATCGTCTTCGGCGGAATCAG+TGG - chr4_1:74300191-74300210 None:intergenic 55.0%
!! CAAGGATGGTGGATCCTGAG+CGG + chr4_1:74301184-74301203 Msa0571610:CDS 55.0%
GTGGCAGTTGGCATTGCTGT+TGG + chr4_1:74301441-74301460 Msa0571610:CDS 55.0%
! GGCAGTTGGCATTGCTGTTG+GGG + chr4_1:74301443-74301462 Msa0571610:CDS 55.0%
!! AGGTTGATGCAGTTCCTGGG+AGG + chr4_1:74301499-74301518 Msa0571610:CDS 55.0%
GTTGCTGTGGTGAGGACGAA+AGG + chr4_1:74301844-74301863 Msa0571610:CDS 55.0%
TGCTGTGGTGAGGACGAAAG+GGG + chr4_1:74301846-74301865 Msa0571610:CDS 55.0%
CTGACATCCGACAACCCCAA+GGG + chr4_1:74301921-74301940 Msa0571610:CDS 55.0%
! GACGATATGTTGGCTGGGGT+AGG + chr4_1:74302114-74302133 Msa0571610:CDS 55.0%
GCGAGCTTCAGTTGCAATGG+GGG + chr4_1:74302239-74302258 Msa0571610:CDS 55.0%
AGCTTCAGTTGCAATGGGGG+AGG + chr4_1:74302242-74302261 Msa0571610:CDS 55.0%
TTCAGTTGCAATGGGGGAGG+AGG + chr4_1:74302245-74302264 Msa0571610:CDS 55.0%
TCAGTTGCAATGGGGGAGGA+GGG + chr4_1:74302246-74302265 Msa0571610:CDS 55.0%
GTCTCTACAGTTGCGCGCAA+AGG - chr4_1:74303258-74303277 None:intergenic 55.0%
TGCATGGTGCAGGTGATTGC+TGG + chr4_1:74303381-74303400 Msa0571610:intron 55.0%
! TCGATGACCGAGAAGAGTGC+AGG + chr4_1:74303451-74303470 Msa0571610:CDS 55.0%
! CGATGACCGAGAAGAGTGCA+GGG + chr4_1:74303452-74303471 Msa0571610:CDS 55.0%
AAGCCTCCCTGCACTCTTCT+CGG - chr4_1:74303461-74303480 None:intergenic 55.0%
ACAGTGGCATGTAAGCCAGG+GGG - chr4_1:74303985-74304004 None:intergenic 55.0%
ACACGCTAGTCCTGCTTCCT+AGG + chr4_1:74304030-74304049 Msa0571610:three_prime_UTR 55.0%
GGAGGGCGGAGAGGAAGTAA+GGG - chr4_1:74299950-74299969 None:intergenic 60.0%
! TTTTCCGTCGGGTGCGATGG+CGG - chr4_1:74299975-74299994 None:intergenic 60.0%
CTTCTTCACGAAGGCGAGCG+CGG - chr4_1:74300093-74300112 None:intergenic 60.0%
!! AGGTTCGTCGGGAGCGTCTT+GGG - chr4_1:74300164-74300183 None:intergenic 60.0%
!! AAGGTTCGTCGGGAGCGTCT+TGG - chr4_1:74300165-74300184 None:intergenic 60.0%
! TCAGTGGCGGAAGGTTCGTC+GGG - chr4_1:74300175-74300194 None:intergenic 60.0%
GTCTTCGGCGGAATCAGTGG+CGG - chr4_1:74300188-74300207 None:intergenic 60.0%
TGAGGCTTCTTCGCGCGGAT+TGG + chr4_1:74301056-74301075 Msa0571610:CDS 60.0%
!! TTCTTCGCGCGGATTGGCTC+AGG + chr4_1:74301062-74301081 Msa0571610:CDS 60.0%
!! TCTTCGCGCGGATTGGCTCA+GGG + chr4_1:74301063-74301082 Msa0571610:CDS 60.0%
GGATGAGGAGGACGAGGAAG+AGG + chr4_1:74301134-74301153 Msa0571610:CDS 60.0%
! TGGTGGATCCTGAGCGGCAT+AGG + chr4_1:74301190-74301209 Msa0571610:CDS 60.0%
! CATTGCTGTTGGGGCACCCT+TGG + chr4_1:74301452-74301471 Msa0571610:CDS 60.0%
GCTGTGGTGAGGACGAAAGG+GGG + chr4_1:74301847-74301866 Msa0571610:CDS 60.0%
GGGGTTGTCGGATGTCAGCA+TGG - chr4_1:74301919-74301938 None:intergenic 60.0%
GCTGACATCCGACAACCCCA+AGG + chr4_1:74301920-74301939 Msa0571610:CDS 60.0%
! TGACCGAGAAGAGTGCAGGG+AGG + chr4_1:74303455-74303474 Msa0571610:CDS 60.0%
GGGAGGGCGGAGAGGAAGTA+AGG - chr4_1:74299951-74299970 None:intergenic 65.0%
GGGTCGTCGTCAGCTGGGTT+TGG - chr4_1:74300004-74300023 None:intergenic 65.0%
GACGACGACCCACCCGAAGT+AGG + chr4_1:74300013-74300032 Msa0571610:CDS 65.0%
TTCACGAAGGCGAGCGCGGT+CGG - chr4_1:74300089-74300108 None:intergenic 65.0%
! GGCGATGGCGGCGAGATAAG+TGG - chr4_1:74300137-74300156 None:intergenic 65.0%
GTCTTGGGAGTCGGCGATGG+CGG - chr4_1:74300149-74300168 None:intergenic 65.0%
AGCGTCTTGGGAGTCGGCGA+TGG - chr4_1:74300152-74300171 None:intergenic 65.0%
!! GTCGGGAGCGTCTTGGGAGT+CGG - chr4_1:74300158-74300177 None:intergenic 65.0%
! TCGGCGGAATCAGTGGCGGA+AGG - chr4_1:74300184-74300203 None:intergenic 65.0%
!! CTTCGCGCGGATTGGCTCAG+GGG + chr4_1:74301064-74301083 Msa0571610:CDS 65.0%
! TGCTGTTGGGGCACCCTTGG+AGG + chr4_1:74301455-74301474 Msa0571610:CDS 65.0%
CGGGTGGGTCGTCGTCAGCT+GGG - chr4_1:74300009-74300028 None:intergenic 70.0%
TCGGGTGGGTCGTCGTCAGC+TGG - chr4_1:74300010-74300029 None:intergenic 70.0%
!! GAGCGCGGTCGGCTTGGAGT+TGG - chr4_1:74300078-74300097 None:intergenic 70.0%
! ATGGCGGAGGGAGGGCGGAG+AGG - chr4_1:74299959-74299978 None:intergenic 75.0%
!! GTGCGATGGCGGAGGGAGGG+CGG - chr4_1:74299964-74299983 None:intergenic 75.0%
!! CGGGTGCGATGGCGGAGGGA+GGG - chr4_1:74299967-74299986 None:intergenic 75.0%
!! TCGGGTGCGATGGCGGAGGG+AGG - chr4_1:74299968-74299987 None:intergenic 75.0%
!! CCGTCGGGTGCGATGGCGGA+GGG - chr4_1:74299971-74299990 None:intergenic 75.0%
CCCTCCGCCATCGCACCCGA+CGG + chr4_1:74299968-74299987 Msa0571610:CDS 75.0%
! TCCGTCGGGTGCGATGGCGG+AGG - chr4_1:74299972-74299991 None:intergenic 75.0%
GAAGGCGAGCGCGGTCGGCT+TGG - chr4_1:74300084-74300103 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 74299726 74304246 74299726 ID=Msa0571610;Name=Msa0571610
chr4_1 mRNA 74299726 74304246 74299726 ID=Msa0571610-mRNA-1;Parent=Msa0571610;Name=Msa0571610-mRNA-1;_AED=0.02;_eAED=0.02;_QI=67|0.8|0.83|1|0.8|0.66|6|468|776
chr4_1 exon 74299726 74299755 74299726 ID=Msa0571610-mRNA-1:exon:25607;Parent=Msa0571610-mRNA-1
chr4_1 exon 74299784 74301642 74299784 ID=Msa0571610-mRNA-1:exon:25608;Parent=Msa0571610-mRNA-1
chr4_1 exon 74301838 74301954 74301838 ID=Msa0571610-mRNA-1:exon:25609;Parent=Msa0571610-mRNA-1
chr4_1 exon 74302103 74302278 74302103 ID=Msa0571610-mRNA-1:exon:25610;Parent=Msa0571610-mRNA-1
chr4_1 exon 74303393 74303522 74303393 ID=Msa0571610-mRNA-1:exon:25611;Parent=Msa0571610-mRNA-1
chr4_1 exon 74303693 74304246 74303693 ID=Msa0571610-mRNA-1:exon:25612;Parent=Msa0571610-mRNA-1
chr4_1 five_prime_UTR 74299726 74299755 74299726 ID=Msa0571610-mRNA-1:five_prime_utr;Parent=Msa0571610-mRNA-1
chr4_1 five_prime_UTR 74299784 74299820 74299784 ID=Msa0571610-mRNA-1:five_prime_utr;Parent=Msa0571610-mRNA-1
chr4_1 CDS 74299821 74301642 74299821 ID=Msa0571610-mRNA-1:cds;Parent=Msa0571610-mRNA-1
chr4_1 CDS 74301838 74301954 74301838 ID=Msa0571610-mRNA-1:cds;Parent=Msa0571610-mRNA-1
chr4_1 CDS 74302103 74302278 74302103 ID=Msa0571610-mRNA-1:cds;Parent=Msa0571610-mRNA-1
chr4_1 CDS 74303393 74303522 74303393 ID=Msa0571610-mRNA-1:cds;Parent=Msa0571610-mRNA-1
chr4_1 CDS 74303693 74303778 74303693 ID=Msa0571610-mRNA-1:cds;Parent=Msa0571610-mRNA-1
chr4_1 three_prime_UTR 74303779 74304246 74303779 ID=Msa0571610-mRNA-1:three_prime_utr;Parent=Msa0571610-mRNA-1
Gene Sequence

>Msa0571610

ATGGCTTTGCCATTTGTTACTCTTCCACACTTCATTTCTCCTACAACTATCAAACCCAATTCAACCACCACCAGACTTAGACCCAAACACTTCCTTCTTCAATTCCCTTCCCGTCCCTTATCTTATCCCTTACTTCCTCTCCGCCCTCCCTCCGCCATCGCACCCGACGGAAAATTCTATCCAAACCCAGCTGACGACGACCCACCCGAAGTAGGCGAAGATTCCGCTCACGGCTTCACCAAATACCAACAAATCCAACTCCAAGCCGACCGCGCTCGCCTTCGTGAAGAAGAAGATTTCAAAAACAATCAAGCCACTTATCTCGCCGCCATCGCCGACTCCCAAGACGCTCCCGACGAACCTTCCGCCACTGATTCCGCCGAAGACGATTTATTCGGCGAAATAGATAAAGCTATCGCTCTTAAACGTAAAGAGTTCGTTAAGCAAGGTCTTCTTAAACCTAATCCCGCCAAATCCGAAATTGAAGCTGTTGAAGAGCTTCAACCTGACGAAGTCGACGATGTAGAAGAAATTGAACGTCTCCGTGAACTCACTGTGAATTCTGATGAATCTCAAGGAGATTTTGAAGAAGATGGTGATTTATCTTTGAAATCCGAATCTTCCTTTGATTTAGATTTTGATAGTTTAGGGAAAAGTAATAAAGCTAGAATTGTTGAACCTAAGTTTAAGATGAGTTTAGCTGAGCTTTTGGATGAGAGTAAAGTGGTTCCTGTTTCGGTTTACGGGAATTTGGAAGTTGAAATTAATGGAATTCAACATGATTCTAGGCTTGTTACTTCTGGTAATTTGTTTGTGTGTTGTGTTGGAAGAGAAAACGATGGACATGTGTTTTTGAGTGAGGCTGATAAGAGAGGTGCTATTGCTGTTGTAGCAAGTAAAGAGATTGATATTGAAGATACTTTAGGTTGTAAGGCTTTGGTTATTGTGGAAGATACAAATGCTGTTCTTGCTACGTTGGCTGCGTCGTTTTATAAGTATCCTTCGAAAAACATGGCTCTTATTGGGATAACGGGGACTTATGGTAAGACAACGACGACTTATTTGATTAAAAGTATGTATGAAGCGATGGGTTTACGTACCGGGATGTTTAACTCGATTGCTAGTTATGTTCATGGGGATAATCAGTTGGATTCGTCTTATGGGGTTCTGGATGCTGTTTTGGTTCAGAATTTGATGGCTAAGATGCTTCATAATGGAACTGAATCTGTGGTTTTTGAGGCTTCTTCGCGCGGATTGGCTCAGGGGAAATATGATGAGGTTGATTTTGATGTTGCTGTTTTTACGAATTTGATGGATGAGGAGGACGAGGAAGAGGATAGAGATGCGAAGGCTAAGCTGTTTTCAAGGATGGTGGATCCTGAGCGGCATAGGAAAGTTGTTAACATTGACGATCCAAGTGCGCCTTTGTTCGTTTCAATGGGGAGCCCTGAAGTTCCTGTTGTGACATTTGCGTTGGAGAATAAGAATGCAGATGTTCATCCCTTGAAGTTTGAACTCTCTTTGTTTGAGACACAGGTGTTGGTTAATACACCTGCTGGGATACTGGAAATTTCGTCCGGTTTACTAGGAAGGCACAATGTTTACAACATTCTTGCTGCTGTGGCAGTTGGCATTGCTGTTGGGGCACCCTTGGAGGATATTGTTAGAGGGATTGAAGAGGTTGATGCAGTTCCTGGGAGGTGTGAGTTAATTGACGAGGAACAAGCATTTGGGGTCATAGTGGACTATGCTCGGACTCCTGATGCCTTGTCTAGATTACTTGATTCTGTAAGAGAGCTTCAACCTCGCAGGATTATAACTGTGATTGGTTGCTGTGGTGAGGACGAAAGGGGGAAGAGACCCCTGATGACAAAGATAGCAACAGATAAAAGTGAAGTGACCATGCTGACATCCGACAACCCCAAGGGTGAAGATCCATTGGATATTTTGGACGATATGTTGGCTGGGGTAGGATGGACAATGCAAGAGTATCTGAAATATGGAGAGAATGACTACTATCCTCCTCTTTCAAATGGTCACAGGCTTTTTCTCCATGACATTAGGAGGGTAGCTGTGCGAGCTTCAGTTGCAATGGGGGAGGAGGGTGATGTTGTTGTGATTGCTGGTAAAGGCCATGAAACATATCAAATAGAAGGTGAGAAAAAGGATTTCTTCGATGACCGAGAAGAGTGCAGGGAGGCTTTGCAGTATGTTGACGAGCTTCATCAAGCTGGAATAGATACAAGTTACCAGAGAGCCACTGATACCAAAGGTTGCTGTGCTAACAATAGATCAGCTTCACCTGTTCACCTGAGTACACAAATGAAGTAG
Protein sequence

>Msa0571610

MALPFVTLPHFISPTTIKPNSTTTRLRPKHFLLQFPSRPLSYPLLPLRPPSAIAPDGKFYPNPADDDPPEVGEDSAHGFTKYQQIQLQADRARLREEEDFKNNQATYLAAIADSQDAPDEPSATDSAEDDLFGEIDKAIALKRKEFVKQGLLKPNPAKSEIEAVEELQPDEVDDVEEIERLRELTVNSDESQGDFEEDGDLSLKSESSFDLDFDSLGKSNKARIVEPKFKMSLAELLDESKVVPVSVYGNLEVEINGIQHDSRLVTSGNLFVCCVGRENDGHVFLSEADKRGAIAVVASKEIDIEDTLGCKALVIVEDTNAVLATLAASFYKYPSKNMALIGITGTYGKTTTTYLIKSMYEAMGLRTGMFNSIASYVHGDNQLDSSYGVLDAVLVQNLMAKMLHNGTESVVFEASSRGLAQGKYDEVDFDVAVFTNLMDEEDEEEDRDAKAKLFSRMVDPERHRKVVNIDDPSAPLFVSMGSPEVPVVTFALENKNADVHPLKFELSLFETQVLVNTPAGILEISSGLLGRHNVYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYARTPDALSRLLDSVRELQPRRIITVIGCCGEDERGKRPLMTKIATDKSEVTMLTSDNPKGEDPLDILDDMLAGVGWTMQEYLKYGENDYYPPLSNGHRLFLHDIRRVAVRASVAMGEEGDVVVIAGKGHETYQIEGEKKDFFDDREECREALQYVDELHQAGIDTSYQRATDTKGCCANNRSASPVHLSTQMK*